AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1009940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009940 MtrunA17_Chr7g0220721 95.533 403 9 4 1 401 1 396 0.0 787
Msa1009940 MtrunA17_Chr4g0072871 40.587 409 159 13 24 401 20 375 1.19e-80 252
Msa1009940 MtrunA17_Chr1g0150471 39.433 388 148 15 24 400 4 315 1.67e-74 234
Msa1009940 MtrunA17_Chr3g0136701 39.948 388 122 12 23 400 3 289 1.03e-69 221
Msa1009940 MtrunA17_Chr4g0033641 43.478 92 43 1 26 108 5 96 1.42e-18 84.3
Msa1009940 MtrunA17_Chr4g0033641 39.474 76 40 1 69 138 5 80 2.52e-11 63.5
Msa1009940 MtrunA17_Chr1g0155811 41.935 93 44 1 26 108 5 97 5.33e-18 83.6
Msa1009940 MtrunA17_Chr5g0405151 48.750 80 33 1 26 97 5 84 6.59e-18 81.3
Msa1009940 MtrunA17_Chr2g0314671 43.011 93 44 1 26 109 5 97 2.24e-17 82.0
Msa1009940 MtrunA17_Chr5g0429341 42.857 91 52 0 26 116 5 95 2.44e-17 83.2
Msa1009940 MtrunA17_Chr7g0268691 35.088 114 66 3 23 132 17 126 3.97e-17 82.4
Msa1009940 MtrunA17_Chr2g0329511 40.217 92 46 1 26 108 5 96 1.34e-16 79.0
Msa1009940 MtrunA17_Chr2g0329511 50.000 50 25 0 69 118 5 54 5.43e-11 62.4
Msa1009940 MtrunA17_Chr3g0142221 33.333 111 63 1 26 125 5 115 2.46e-15 74.7
Msa1009940 MtrunA17_Chr4g0035651 38.710 93 47 1 26 108 5 97 1.37e-14 72.8
Msa1009940 MtrunA17_Chr3g0120711 41.758 91 52 1 26 116 5 94 2.15e-14 74.3
Msa1009940 MtrunA17_Chr3g0145061 35.417 96 52 1 26 111 5 100 1.48e-13 69.7
Msa1009940 MtrunA17_Chr8g0390971 32.275 189 92 5 204 375 232 401 2.84e-12 67.8
Msa1009940 MtrunA17_Chr1g0209071 37.838 74 46 0 24 97 3 76 1.17e-11 65.5
Msa1009940 MtrunA17_Chr2g0322951 64.444 45 16 0 329 373 89 133 1.84e-11 61.6
Msa1009940 MtrunA17_Chr1g0209861 69.767 43 13 0 332 374 382 424 3.39e-11 64.7
Msa1009940 MtrunA17_Chr7g0251781 68.293 41 13 0 336 376 345 385 3.93e-11 64.3
Msa1009940 MtrunA17_Chr2g0322941 35.165 91 59 0 16 106 34 124 4.81e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009940 AT3G02380.1 54.637 399 105 11 19 401 9 347 1.66e-129 376
Msa1009940 AT5G15840.1 52.405 395 134 13 23 401 17 373 2.45e-116 344
Msa1009940 AT5G15850.1 52.357 403 126 10 16 401 2 355 4.25e-115 340
Msa1009940 AT5G57660.1 43.333 390 157 14 23 401 19 355 2.05e-76 241
Msa1009940 AT5G24930.1 40.150 401 177 11 23 401 3 362 2.74e-75 238
Msa1009940 AT2G24790.1 40.000 360 125 12 20 376 2 273 4.13e-71 225
Msa1009940 AT5G15840.2 47.653 277 100 9 23 290 17 257 8.35e-63 203
Msa1009940 AT2G24790.2 42.857 182 78 5 20 198 2 160 6.65e-41 144
Msa1009940 AT5G48250.1 29.737 380 208 16 26 373 5 357 1.79e-24 103
Msa1009940 AT1G78600.1 44.565 92 42 1 26 108 5 96 1.82e-18 85.5
Msa1009940 AT1G78600.2 44.565 92 42 1 26 108 5 96 1.85e-18 85.9
Msa1009940 AT1G06040.1 43.478 92 43 1 26 108 5 96 2.76e-17 81.3
Msa1009940 AT2G21320.1 47.500 80 34 1 26 97 5 84 4.54e-17 79.0
Msa1009940 AT2G47890.3 38.710 93 55 1 24 116 11 101 6.31e-17 81.3
Msa1009940 AT1G06040.2 43.478 92 43 1 26 108 5 96 9.23e-17 78.2
Msa1009940 AT2G47890.2 38.710 93 55 1 24 116 11 101 1.12e-16 79.3
Msa1009940 AT2G47890.1 38.710 93 55 1 24 116 11 101 1.12e-16 80.9
Msa1009940 AT4G38960.1 45.000 80 36 1 26 97 5 84 1.44e-16 77.8
Msa1009940 AT4G38960.6 45.000 80 36 1 26 97 5 84 1.44e-16 77.8
Msa1009940 AT2G33500.2 34.127 126 75 2 25 150 11 128 4.34e-16 79.7
Msa1009940 AT2G33500.2 63.043 46 17 0 331 376 355 400 1.42e-11 66.2
Msa1009940 AT2G33500.1 34.127 126 75 2 25 150 11 128 4.45e-16 79.7
Msa1009940 AT2G33500.1 63.043 46 17 0 331 376 356 401 1.44e-11 66.2
Msa1009940 AT2G31380.1 40.217 92 46 1 26 108 5 96 6.77e-16 77.0
Msa1009940 AT1G75540.1 37.895 95 47 1 26 108 5 99 9.18e-16 78.2
Msa1009940 AT3G21880.1 25.840 387 211 13 26 376 5 351 2.02e-15 77.4
Msa1009940 AT3G21880.3 25.840 387 211 13 26 376 9 355 2.26e-15 77.4
Msa1009940 AT3G21880.2 25.840 387 211 13 26 376 9 355 2.26e-15 77.4
Msa1009940 AT1G28050.1 35.922 103 63 1 26 128 9 108 1.30e-14 75.5
Msa1009940 AT1G68520.1 36.290 124 73 3 257 377 282 402 7.21e-13 70.1
Msa1009940 AT1G73870.1 68.085 47 15 0 331 377 344 390 9.61e-13 69.7
Msa1009940 AT3G07650.3 43.056 72 41 0 26 97 5 76 1.05e-12 69.3
Msa1009940 AT3G07650.2 43.056 72 41 0 26 97 5 76 1.05e-12 69.3
Msa1009940 AT3G07650.4 43.056 72 41 0 26 97 5 76 1.05e-12 69.3
Msa1009940 AT3G07650.1 43.056 72 41 0 26 97 5 76 1.05e-12 69.3
Msa1009940 AT1G68190.2 34.000 100 61 2 24 123 41 135 1.08e-12 69.3
Msa1009940 AT1G68190.1 34.000 100 61 2 24 123 12 106 1.34e-12 68.9
Msa1009940 AT1G68190.3 34.000 100 61 2 24 123 12 106 1.34e-12 68.9
Msa1009940 AT1G25440.1 37.778 135 65 3 250 374 278 403 1.97e-12 68.9
Msa1009940 AT4G15250.1 35.714 84 54 0 26 109 5 88 2.81e-12 67.8
Msa1009940 AT4G10240.1 34.694 98 45 2 26 108 5 98 5.93e-12 63.9
Msa1009940 AT4G39070.1 35.417 96 52 1 26 111 5 100 3.77e-11 63.2
Msa1009940 AT5G14370.1 47.619 63 33 0 314 376 276 338 5.65e-11 63.9

Find 120 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGTTTGTTTGTCAATTT+TGG 0.123201 7_1:+12348955 None:intergenic
TTGACGAAATTACAGTAATT+TGG 0.192997 7_1:+12345680 None:intergenic
GTCCCGATTCTTCCAATTTC+CGG 0.213967 7_1:-12348587 Msa1009940:CDS
CTCATCATGATGAGTATTAT+TGG 0.214592 7_1:+12348241 None:intergenic
CTTCATCTTCGGCACCTAAA+AGG 0.221370 7_1:+12348540 None:intergenic
CCAATTTCCGGTTACCTTTA+CGG 0.243807 7_1:-12348575 Msa1009940:CDS
AATAGGTCAATTGTTCCTTT+TGG 0.257022 7_1:+12346078 None:intergenic
TGAAACGATGTTAAACAAAA+TGG 0.277120 7_1:-12345799 Msa1009940:three_prime_UTR
GAATAGGTCATGGTTGATTC+TGG 0.297791 7_1:+12346108 None:intergenic
GAAACTCGGCCGCGTATAAA+AGG 0.298232 7_1:-12345919 Msa1009940:CDS
ATATATTGACACAATATAAA+AGG 0.303540 7_1:-12345358 Msa1009940:three_prime_UTR
CCACGTTGCCGCAGACCTTA+TGG 0.314996 7_1:+12348868 None:intergenic
TTGTTATTGATGTTCTTTAG+AGG 0.325161 7_1:+12348404 None:intergenic
TAAGTGCATGTTTGAATTGA+TGG 0.328168 7_1:-12345767 Msa1009940:three_prime_UTR
ATGAAAATGAAGCTGCTTCA+TGG 0.340820 7_1:-12348439 Msa1009940:CDS
CTCTATCCATTGGAGAGAAA+TGG 0.342666 7_1:+12346028 None:intergenic
GAAAATTTGAGAAAACAATT+AGG 0.345101 7_1:-12345966 Msa1009940:CDS
TGGTAATAGTAAAAGATAAA+TGG 0.346877 7_1:+12345591 None:intergenic
GGCTTTGTCGGCGGTGGTTG+TGG 0.350451 7_1:-12348518 Msa1009940:CDS
CATAATCAAGAGGGTAATAA+TGG 0.353323 7_1:-12348347 Msa1009940:CDS
CCGTAAAGGTAACCGGAAAT+TGG 0.358200 7_1:+12348575 None:intergenic
CAACAACAACAAGATCATTA+TGG 0.359775 7_1:-12348209 Msa1009940:CDS
AATAATGGATATTTGTTTAG+TGG 0.365221 7_1:-12348332 Msa1009940:CDS
CTAATTACAGAAGTTGGATA+TGG 0.366492 7_1:-12345838 Msa1009940:CDS
TTTAACATCGTTTCAGAAAG+AGG 0.368123 7_1:+12345807 None:intergenic
TGGGAAGACATTTGAATAGA+AGG 0.383605 7_1:+12346048 None:intergenic
GACACAATATAAAAGGATAA+TGG 0.398986 7_1:-12345351 Msa1009940:three_prime_UTR
GAATAGAAGGACCTGAAAAT+AGG 0.406008 7_1:+12346061 None:intergenic
TAACCGGAAATTGGAAGAAT+CGG 0.415877 7_1:+12348584 None:intergenic
GAGTTTGAGTCTTCCAAAGC+TGG 0.426808 7_1:-12348107 Msa1009940:CDS
GGTGGCTGTGGCTGAGGTGG+TGG 0.428121 7_1:+12348889 None:intergenic
GTCGGCGGTGGTTGTGGTGG+CGG 0.428147 7_1:-12348512 Msa1009940:CDS
GAAGAATCGGGACACGTTGA+TGG 0.431550 7_1:+12348597 None:intergenic
TCAGGTTTCAGTTTCATCAA+TGG 0.434568 7_1:-12346145 Msa1009940:intron
CAAACATGCACTTAGTTCTC+TGG 0.436340 7_1:+12345776 None:intergenic
CCTTATGGTGGCTGTGGCTG+AGG 0.436720 7_1:+12348883 None:intergenic
TATCCATGAGTGTATTACTT+TGG 0.436981 7_1:-12345306 Msa1009940:three_prime_UTR
AAATCTTGCTCCAACATTTG+TGG 0.438282 7_1:+12348917 None:intergenic
ATTGTAACTGAATCCAGCTT+TGG 0.441148 7_1:+12348094 None:intergenic
TGTACCTGCTGTTGTTGAAC+AGG 0.442029 7_1:+12348149 None:intergenic
TGAAGGTGTTGATCATGATA+TGG 0.443702 7_1:-12348465 Msa1009940:CDS
GATGAAGGCTTTGTCGGCGG+TGG 0.445280 7_1:-12348524 Msa1009940:CDS
ATTACTGTAATTTCGTCAAA+CGG 0.446563 7_1:-12345676 Msa1009940:three_prime_UTR
TCTATCCATTGGAGAGAAAT+GGG 0.447374 7_1:+12346029 None:intergenic
GTCTTCCCATTTCTCTCCAA+TGG 0.450964 7_1:-12346034 Msa1009940:CDS
ACATCACTAATTACAGAAGT+TGG 0.453991 7_1:-12345844 Msa1009940:CDS
TTCATCTTCGGCACCTAAAA+GGG 0.458034 7_1:+12348541 None:intergenic
GCCGACAAAGCCTTCATCTT+CGG 0.465052 7_1:+12348529 None:intergenic
TGAGGCCTGCGAGCGTGCCC+CGG 0.465827 7_1:-12348705 Msa1009940:CDS
TGGAGAAGTTGATGAGTACT+TGG 0.471287 7_1:-12348312 Msa1009940:CDS
TGCTCCAACATTTGTGGAGA+GGG 0.475498 7_1:+12348923 None:intergenic
GCCGAAGATGAAGGCTTTGT+CGG 0.477058 7_1:-12348530 Msa1009940:CDS
CGGAGGACCGTAAAGGTAAC+CGG 0.478457 7_1:+12348568 None:intergenic
ACTCTTGCTTCTCTATCCAT+TGG 0.478486 7_1:+12346018 None:intergenic
GTGGAAGAAGAGGAGGATGA+AGG 0.479258 7_1:-12348482 Msa1009940:CDS
TCAGTTTCATCAATGGATGT+TGG 0.481745 7_1:-12346138 Msa1009940:CDS
AGTGTTAAGGAAGTTCAAAT+AGG 0.491879 7_1:+12348984 None:intergenic
TGGAGGTCTTGAATAGGTCA+TGG 0.494897 7_1:+12346098 None:intergenic
TTGTGGTGGCGGCTGTGAGG+TGG 0.496832 7_1:-12348501 Msa1009940:CDS
CGCAGACCTTATGGTGGCTG+TGG 0.501654 7_1:+12348877 None:intergenic
TTACTGTAATTTCGTCAAAC+GGG 0.504207 7_1:-12345675 Msa1009940:three_prime_UTR
AAAATACAAAAGCTATATGA+TGG 0.510161 7_1:+12345328 None:intergenic
AAACAATTAGGTATGCTTCA+AGG 0.513566 7_1:-12345954 Msa1009940:CDS
CCTCAGCCACAGCCACCATA+AGG 0.513892 7_1:-12348883 Msa1009940:CDS
AACCGGAAATTGGAAGAATC+GGG 0.527364 7_1:+12348585 None:intergenic
CTTTACAAAGAAAAGCCGCC+GGG 0.532716 7_1:+12348687 None:intergenic
TATGGTGGCTGTGGCTGAGG+TGG 0.539082 7_1:+12348886 None:intergenic
TTAACATCGTTTCAGAAAGA+GGG 0.540903 7_1:+12345808 None:intergenic
TGGTTGTGGTGGCGGCTGTG+AGG 0.542306 7_1:-12348504 Msa1009940:CDS
CTGTGGCTGAGGTGGTGGTG+AGG 0.545540 7_1:+12348894 None:intergenic
ACCTATTCAAGACCTCCAAA+AGG 0.546280 7_1:-12346093 Msa1009940:CDS
GCGCGGCAGAAAACCGCGCA+TGG 0.548669 7_1:+12348815 None:intergenic
CGTTGATGGCGGCTTGCAAG+AGG 0.550196 7_1:+12348611 None:intergenic
TTTGTCGGCGGTGGTTGTGG+TGG 0.554712 7_1:-12348515 Msa1009940:CDS
TCAAATATACACTAAGGAGA+AGG 0.556269 7_1:-12345644 Msa1009940:three_prime_UTR
AACTTCTGTAATTAGTGATG+TGG 0.558143 7_1:+12345846 None:intergenic
TTAGTGTATATTTGAAAGCA+CGG 0.559419 7_1:+12345652 None:intergenic
CTTGTTGATTGCAATTCTTG+TGG 0.560089 7_1:-12348287 Msa1009940:CDS
CGGCTGTGAGGTGGAAGAAG+AGG 0.566525 7_1:-12348492 Msa1009940:CDS
GTTGATTGCAATTCTTGTGG+TGG 0.567048 7_1:-12348284 Msa1009940:CDS
CTCCAACATTTGTGGAGAGG+GGG 0.567790 7_1:+12348925 None:intergenic
TCACCAAAGTAATACACTCA+TGG 0.568692 7_1:+12345303 None:intergenic
CATAAGGTCTGCGGCAACGT+GGG 0.569294 7_1:-12348867 Msa1009940:CDS
TGTTCCTGTTCAACAACAGC+AGG 0.577069 7_1:-12348153 Msa1009940:CDS
AGCATGTGACACGTGCCGCT+CGG 0.577146 7_1:-12348840 Msa1009940:CDS
ATAGAGAAGCAAGAGTCCTA+AGG 0.578755 7_1:-12346011 Msa1009940:CDS
GTGCTTTCAAATATACACTA+AGG 0.578909 7_1:-12345650 Msa1009940:three_prime_UTR
GTTCGTGCCTCGAGGCTACA+CGG 0.579119 7_1:+12348741 None:intergenic
GCGGCAGAAAACCGCGCATG+GGG 0.588981 7_1:+12348817 None:intergenic
GCTTTACAAAGAAAAGCCGC+CGG 0.590036 7_1:+12348686 None:intergenic
AATAACAACAACATTAGCAA+TGG 0.607541 7_1:-12348371 Msa1009940:CDS
AAACCGCGCATGGGGCCGAG+CGG 0.610346 7_1:+12348825 None:intergenic
CTGTGAGGTGGAAGAAGAGG+AGG 0.610586 7_1:-12348489 Msa1009940:CDS
GCTCCAACATTTGTGGAGAG+GGG 0.610704 7_1:+12348924 None:intergenic
TTGCTCCAACATTTGTGGAG+AGG 0.611435 7_1:+12348922 None:intergenic
TAGCAATGGTCATAATCAAG+AGG 0.613653 7_1:-12348357 Msa1009940:CDS
GGGTGGCCGGAGGACCGTAA+AGG 0.615076 7_1:+12348561 None:intergenic
ACGCGGCCGAGTTTCAGCAT+AGG 0.616320 7_1:+12345927 None:intergenic
CCATAAGGTCTGCGGCAACG+TGG 0.618452 7_1:-12348868 Msa1009940:CDS
GGAAAGCCTATGCTGAAACT+CGG 0.623923 7_1:-12345933 Msa1009940:CDS
AAAGCTGGATTCAGTTACAA+TGG 0.625769 7_1:-12348092 Msa1009940:CDS
AGCAATGGTCATAATCAAGA+GGG 0.627143 7_1:-12348356 Msa1009940:CDS
CACAGCCACCATAAGGTCTG+CGG 0.627512 7_1:-12348876 Msa1009940:CDS
GTTGATGGCGGCTTGCAAGA+GGG 0.631032 7_1:+12348612 None:intergenic
GTGGATATCAGCATCACAAG+TGG 0.632088 7_1:+12348643 None:intergenic
AGGCTACACGGTTTGCCGCG+TGG 0.644154 7_1:+12348753 None:intergenic
ATCTTCGGCACCTAAAAGGG+TGG 0.644787 7_1:+12348544 None:intergenic
GTGGATGCGTGCATCACACG+CGG 0.646833 7_1:+12348772 None:intergenic
TTGCAAGAGGGTTAGCAGAG+TGG 0.655218 7_1:+12348624 None:intergenic
GAAGATGAAGGCTTTGTCGG+CGG 0.655301 7_1:-12348527 Msa1009940:CDS
CACAAGAATTGCAATCAACA+AGG 0.655647 7_1:+12348288 None:intergenic
GCTGGATTCAGTTACAATGG+TGG 0.656212 7_1:-12348089 Msa1009940:CDS
GAATCGGGACACGTTGATGG+CGG 0.662257 7_1:+12348600 None:intergenic
ACAGTATTAGTAGAAAGACT+TGG 0.669242 7_1:+12345571 None:intergenic
CGTTGCCGCAGACCTTATGG+TGG 0.670034 7_1:+12348871 None:intergenic
GTGTGATGCACGCATCCACG+CGG 0.684344 7_1:-12348768 Msa1009940:CDS
CGGCAAACCGTGTAGCCTCG+AGG 0.686538 7_1:-12348748 Msa1009940:CDS
ATAAATATGCCGAATCTGCG+CGG 0.687353 7_1:+12348798 None:intergenic
TTTACAAAGAAAAGCCGCCG+GGG 0.712447 7_1:+12348688 None:intergenic
CCAGACGCGTTCGTGCCTCG+AGG 0.721870 7_1:+12348733 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATAAATTATAATCTAAA+AGG + chr7_1:12346544-12346563 None:intergenic 10.0%
!!! TTTATTTTATTTTTTGTCTT+GGG + chr7_1:12346676-12346695 None:intergenic 10.0%
!!! TTTTATTTTATTTTTTGTCT+TGG + chr7_1:12346677-12346696 None:intergenic 10.0%
!!! TGATTTTTTCAAATTATTAA+CGG - chr7_1:12347378-12347397 Msa1009940:intron 10.0%
!! AAGCAAAAAATTTATTATAT+TGG + chr7_1:12347555-12347574 None:intergenic 10.0%
!! TATTGAAATATTTATCTTTA+AGG - chr7_1:12347714-12347733 Msa1009940:intron 10.0%
!! ATTGAAATATTTATCTTTAA+GGG - chr7_1:12347715-12347734 Msa1009940:intron 10.0%
!!! TTTGTAGTTTTTTTTCTTAA+GGG + chr7_1:12346616-12346635 None:intergenic 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+AGG + chr7_1:12346617-12346636 None:intergenic 15.0%
!!! TTATTTTATTTTTTGTCTTG+GGG + chr7_1:12346675-12346694 None:intergenic 15.0%
!! AGAGTTTGATATTATAAATT+AGG + chr7_1:12346872-12346891 None:intergenic 15.0%
!!! TTTTATGAAATTGTTGAAAA+TGG + chr7_1:12347217-12347236 None:intergenic 15.0%
!!! AAAAAAGTGTAAAGAAAAAA+GGG + chr7_1:12347460-12347479 None:intergenic 15.0%
!! ATATTAGTGATAAAAAAAGT+AGG + chr7_1:12348136-12348155 None:intergenic 15.0%
!! ATATATTGACACAATATAAA+AGG - chr7_1:12348964-12348983 Msa1009940:five_prime_UTR 15.0%
!!! AATAATGGATATTTGTTTAG+TGG - chr7_1:12345990-12346009 Msa1009940:CDS 20.0%
!!! TTGTAGTTTTTTTTCTTAAG+GGG + chr7_1:12346615-12346634 None:intergenic 20.0%
!!! TATTTTATTTTTTGTCTTGG+GGG + chr7_1:12346674-12346693 None:intergenic 20.0%
!! AAAATAAAAAAAAAGACACG+TGG - chr7_1:12346688-12346707 Msa1009940:intron 20.0%
!! TATCAGCATTAAAATTCATA+AGG + chr7_1:12346957-12346976 None:intergenic 20.0%
!!! AAAAGTTGTTAATTTGCATT+TGG - chr7_1:12347147-12347166 Msa1009940:intron 20.0%
!! TCAACAATTTCATAAAAACA+TGG - chr7_1:12347220-12347239 Msa1009940:intron 20.0%
!! TTCAGTGTAATTATATGAAT+CGG + chr7_1:12347353-12347372 None:intergenic 20.0%
!!! GAAAAAAGTGTAAAGAAAAA+AGG + chr7_1:12347461-12347480 None:intergenic 20.0%
!!! TATTCTAGAAAATTGATACT+TGG + chr7_1:12347592-12347611 None:intergenic 20.0%
!!! TTTCATTTTCTTTTCTTATC+AGG - chr7_1:12348159-12348178 Msa1009940:CDS 20.0%
!! GAAAATTTGAGAAAACAATT+AGG - chr7_1:12348356-12348375 Msa1009940:CDS 20.0%
!! TGGTAATAGTAAAAGATAAA+TGG + chr7_1:12348734-12348753 None:intergenic 20.0%
!!! ATTTTTCTCAATTTGTATTG+TGG - chr7_1:12348922-12348941 Msa1009940:exon 20.0%
!! AAAATACAAAAGCTATATGA+TGG + chr7_1:12348997-12349016 None:intergenic 20.0%
!!! AATGGTTTGTTTGTCAATTT+TGG + chr7_1:12345370-12345389 None:intergenic 25.0%
!! TTGTTATTGATGTTCTTTAG+AGG + chr7_1:12345921-12345940 None:intergenic 25.0%
! AATAACAACAACATTAGCAA+TGG - chr7_1:12345951-12345970 Msa1009940:CDS 25.0%
!!! TTGTTTTGTTTGCAATTGTT+TGG - chr7_1:12346338-12346357 Msa1009940:intron 25.0%
!! CTTTTCCAAATTTGTGATTT+TGG + chr7_1:12346825-12346844 None:intergenic 25.0%
! TTAAAATTCATAAGGTTCGA+TGG + chr7_1:12346949-12346968 None:intergenic 25.0%
! TTTGAATTTGATATGCTTTG+TGG - chr7_1:12347049-12347068 Msa1009940:intron 25.0%
! TTTCAAATTATTAACGGTGT+CGG - chr7_1:12347384-12347403 Msa1009940:intron 25.0%
! AAAAAGGGTAAAGAGTTATA+CGG + chr7_1:12347445-12347464 None:intergenic 25.0%
!!! CTTTACACTTTTTTCTTTAG+TGG - chr7_1:12347466-12347485 Msa1009940:intron 25.0%
!! AATCTACAGAAGTCAATTTT+GGG + chr7_1:12347779-12347798 None:intergenic 25.0%
! TCAGGTCTAATATTGTAAAT+TGG - chr7_1:12347862-12347881 Msa1009940:intron 25.0%
! CCAATAATTGTCATTCTTAT+CGG + chr7_1:12348042-12348061 None:intergenic 25.0%
! AAAAAAGTAGGAGATATCAA+AGG + chr7_1:12348124-12348143 None:intergenic 25.0%
! TGAAACGATGTTAAACAAAA+TGG - chr7_1:12348523-12348542 Msa1009940:CDS 25.0%
!!! TGTAGCTTTTAGAAAAATGA+CGG + chr7_1:12348608-12348627 None:intergenic 25.0%
!!! TTTTTCTAAAAGCTACACTT+TGG - chr7_1:12348611-12348630 Msa1009940:CDS 25.0%
! TTGACGAAATTACAGTAATT+TGG + chr7_1:12348645-12348664 None:intergenic 25.0%
! ATTACTGTAATTTCGTCAAA+CGG - chr7_1:12348646-12348665 Msa1009940:CDS 25.0%
! TTAGTGTATATTTGAAAGCA+CGG + chr7_1:12348673-12348692 None:intergenic 25.0%
! GACACAATATAAAAGGATAA+TGG - chr7_1:12348971-12348990 Msa1009940:five_prime_UTR 25.0%
AGTGTTAAGGAAGTTCAAAT+AGG + chr7_1:12345341-12345360 None:intergenic 30.0%
CATAATCAAGAGGGTAATAA+TGG - chr7_1:12345975-12345994 Msa1009940:CDS 30.0%
CTCATCATGATGAGTATTAT+TGG + chr7_1:12346084-12346103 None:intergenic 30.0%
CAACAACAACAAGATCATTA+TGG - chr7_1:12346113-12346132 Msa1009940:CDS 30.0%
! AGGTACAGAATTTTCAACTT+GGG - chr7_1:12346189-12346208 Msa1009940:intron 30.0%
TTGTTTGCAATTGTTTGGAA+AGG - chr7_1:12346343-12346362 Msa1009940:intron 30.0%
TGTTTGCAATTGTTTGGAAA+GGG - chr7_1:12346344-12346363 Msa1009940:intron 30.0%
GGACAAATTTCAAATCATGT+CGG + chr7_1:12346523-12346542 None:intergenic 30.0%
TCAAACTCTTACTACTAAAG+TGG - chr7_1:12346883-12346902 Msa1009940:intron 30.0%
TACTACTAAAGTGGACAAAT+CGG - chr7_1:12346892-12346911 Msa1009940:intron 30.0%
!!! AAATACCGATTTTCAAACCA+AGG + chr7_1:12347009-12347028 None:intergenic 30.0%
!!! ACACTTTTTTCTTTAGTGGA+AGG - chr7_1:12347470-12347489 Msa1009940:intron 30.0%
! ATCTACAGAAGTCAATTTTG+GGG + chr7_1:12347778-12347797 None:intergenic 30.0%
! GAATCTACAGAAGTCAATTT+TGG + chr7_1:12347780-12347799 None:intergenic 30.0%
GGATCGCAATATTTAAACAA+AGG - chr7_1:12347883-12347902 Msa1009940:intron 30.0%
TACTACAATCACTTTGCAAT+AGG - chr7_1:12347921-12347940 Msa1009940:intron 30.0%
ATCGGTAAGAACATAAATCT+TGG + chr7_1:12348024-12348043 None:intergenic 30.0%
CCGATAAGAATGACAATTAT+TGG - chr7_1:12348039-12348058 Msa1009940:intron 30.0%
! AATAGGTCAATTGTTCCTTT+TGG + chr7_1:12348247-12348266 None:intergenic 30.0%
AAACAATTAGGTATGCTTCA+AGG - chr7_1:12348368-12348387 Msa1009940:CDS 30.0%
AACTTCTGTAATTAGTGATG+TGG + chr7_1:12348479-12348498 None:intergenic 30.0%
ACATCACTAATTACAGAAGT+TGG - chr7_1:12348478-12348497 Msa1009940:CDS 30.0%
CTAATTACAGAAGTTGGATA+TGG - chr7_1:12348484-12348503 Msa1009940:CDS 30.0%
TTAACATCGTTTCAGAAAGA+GGG + chr7_1:12348517-12348536 None:intergenic 30.0%
TTTAACATCGTTTCAGAAAG+AGG + chr7_1:12348518-12348537 None:intergenic 30.0%
TAAGTGCATGTTTGAATTGA+TGG - chr7_1:12348555-12348574 Msa1009940:CDS 30.0%
TTACTGTAATTTCGTCAAAC+GGG - chr7_1:12348647-12348666 Msa1009940:CDS 30.0%
GTGCTTTCAAATATACACTA+AGG - chr7_1:12348672-12348691 Msa1009940:CDS 30.0%
TCAAATATACACTAAGGAGA+AGG - chr7_1:12348678-12348697 Msa1009940:CDS 30.0%
! AAATGGTTGCAATTTTCTGT+TGG + chr7_1:12348717-12348736 None:intergenic 30.0%
ACAGTATTAGTAGAAAGACT+TGG + chr7_1:12348754-12348773 None:intergenic 30.0%
TATCCATGAGTGTATTACTT+TGG - chr7_1:12349016-12349035 Msa1009940:five_prime_UTR 30.0%
! ATTTTGGACAGACAGTGTTA+AGG + chr7_1:12345354-12345373 None:intergenic 35.0%
AAATCTTGCTCCAACATTTG+TGG + chr7_1:12345408-12345427 None:intergenic 35.0%
TAACCGGAAATTGGAAGAAT+CGG + chr7_1:12345741-12345760 None:intergenic 35.0%
!! TGAAGGTGTTGATCATGATA+TGG - chr7_1:12345857-12345876 Msa1009940:CDS 35.0%
ATGAAAATGAAGCTGCTTCA+TGG - chr7_1:12345883-12345902 Msa1009940:CDS 35.0%
TAGCAATGGTCATAATCAAG+AGG - chr7_1:12345965-12345984 Msa1009940:CDS 35.0%
AGCAATGGTCATAATCAAGA+GGG - chr7_1:12345966-12345985 Msa1009940:CDS 35.0%
CACAAGAATTGCAATCAACA+AGG + chr7_1:12346037-12346056 None:intergenic 35.0%
! CTTGTTGATTGCAATTCTTG+TGG - chr7_1:12346035-12346054 Msa1009940:CDS 35.0%
TGTTCCTCAAAAAAGCTATG+TGG - chr7_1:12346136-12346155 Msa1009940:CDS 35.0%
GTTCCTCAAAAAAGCTATGT+GGG - chr7_1:12346137-12346156 Msa1009940:CDS 35.0%
! CAGGTACAGAATTTTCAACT+TGG - chr7_1:12346188-12346207 Msa1009940:intron 35.0%
! ACAGAATTTTCAACTTGGGT+TGG - chr7_1:12346193-12346212 Msa1009940:intron 35.0%
ATTGTAACTGAATCCAGCTT+TGG + chr7_1:12346231-12346250 None:intergenic 35.0%
AAAGCTGGATTCAGTTACAA+TGG - chr7_1:12346230-12346249 Msa1009940:intron 35.0%
TGTTTGGAAAGGGTTGAAAT+TGG - chr7_1:12346354-12346373 Msa1009940:intron 35.0%
TTCCTCAATACCAATTCAAG+AGG + chr7_1:12346446-12346465 None:intergenic 35.0%
! TCTTGAATTGGTATTGAGGA+AGG - chr7_1:12346445-12346464 Msa1009940:intron 35.0%
! CTTGAATTGGTATTGAGGAA+GGG - chr7_1:12346446-12346465 Msa1009940:intron 35.0%
! TCACAACTTTGGGAAAGTTA+GGG + chr7_1:12346586-12346605 None:intergenic 35.0%
! ATCACAACTTTGGGAAAGTT+AGG + chr7_1:12346587-12346606 None:intergenic 35.0%
GCTACAGTTGCAAAACTTAT+GGG + chr7_1:12346643-12346662 None:intergenic 35.0%
TGCTACAGTTGCAAAACTTA+TGG + chr7_1:12346644-12346663 None:intergenic 35.0%
! TTTTGCAACTGTAGCAGTTT+TGG - chr7_1:12346648-12346667 Msa1009940:intron 35.0%
! TTTTGCAACTGTGGTAGTTT+TGG + chr7_1:12346768-12346787 None:intergenic 35.0%
TACCACAGTTGCAAAACTTA+GGG - chr7_1:12346772-12346791 Msa1009940:intron 35.0%
!! CGCGGTTTTGTAGTTTTTTT+GGG - chr7_1:12346797-12346816 Msa1009940:intron 35.0%
!!! GCGGTTTTGTAGTTTTTTTG+GGG - chr7_1:12346798-12346817 Msa1009940:intron 35.0%
!!! CGGTTTTGTAGTTTTTTTGG+GGG - chr7_1:12346799-12346818 Msa1009940:intron 35.0%
! AGTGGACAAATCGGTATTTT+TGG - chr7_1:12346901-12346920 Msa1009940:intron 35.0%
!!! TCGGTATTTTTGGTGTAAAC+CGG - chr7_1:12346911-12346930 Msa1009940:intron 35.0%
! GATTTTCAAACCAAGGTTCT+GGG + chr7_1:12347002-12347021 None:intergenic 35.0%
! CAGAACCTTGGTTTGAAAAT+CGG - chr7_1:12347001-12347020 Msa1009940:intron 35.0%
!! ACAACTTTTGAGTCCAACTA+TGG + chr7_1:12347136-12347155 None:intergenic 35.0%
ATGAAACACGAAACACTCTT+CGG - chr7_1:12347286-12347305 Msa1009940:intron 35.0%
TCTTTAGTGGAAGGAATCTA+AGG - chr7_1:12347479-12347498 Msa1009940:intron 35.0%
! TAGCAAGAAAGCATGATACT+TGG + chr7_1:12347506-12347525 None:intergenic 35.0%
AAGTATCATGCTTTCTTGCT+AGG - chr7_1:12347505-12347524 Msa1009940:intron 35.0%
CTTGAAGCCATTTACTAGTA+CGG - chr7_1:12347614-12347633 Msa1009940:intron 35.0%
TGTTGTTCCGTACTAGTAAA+TGG + chr7_1:12347624-12347643 None:intergenic 35.0%
! ACAAGTACAAGTAGTGTTGA+AGG - chr7_1:12347641-12347660 Msa1009940:intron 35.0%
!! ATTTTGGGGGAATTAGATTC+TGG + chr7_1:12347764-12347783 None:intergenic 35.0%
! TCTACAGAAGTCAATTTTGG+GGG + chr7_1:12347777-12347796 None:intergenic 35.0%
ACTCAGAGTTTACTGATAAG+TGG - chr7_1:12347826-12347845 Msa1009940:intron 35.0%
CAGTTTCAATTAGTGCTACA+TGG - chr7_1:12348068-12348087 Msa1009940:intron 35.0%
TCAGGTTTCAGTTTCATCAA+TGG - chr7_1:12348177-12348196 Msa1009940:CDS 35.0%
TCAGTTTCATCAATGGATGT+TGG - chr7_1:12348184-12348203 Msa1009940:CDS 35.0%
! GGAACAATTGACCTATTTTC+AGG - chr7_1:12348250-12348269 Msa1009940:CDS 35.0%
GAATAGAAGGACCTGAAAAT+AGG + chr7_1:12348264-12348283 None:intergenic 35.0%
TGGGAAGACATTTGAATAGA+AGG + chr7_1:12348277-12348296 None:intergenic 35.0%
TCTATCCATTGGAGAGAAAT+GGG + chr7_1:12348296-12348315 None:intergenic 35.0%
! TCTTTTTCTCTCTGTACCTT+AGG + chr7_1:12348330-12348349 None:intergenic 35.0%
ATAAATATGCCGAATCTGCG+CGG + chr7_1:12345527-12345546 None:intergenic 40.0%
AACCGGAAATTGGAAGAATC+GGG + chr7_1:12345740-12345759 None:intergenic 40.0%
CCAATTTCCGGTTACCTTTA+CGG - chr7_1:12345747-12345766 Msa1009940:three_prime_UTR 40.0%
TTCATCTTCGGCACCTAAAA+GGG + chr7_1:12345784-12345803 None:intergenic 40.0%
!! TGGAGAAGTTGATGAGTACT+TGG - chr7_1:12346010-12346029 Msa1009940:CDS 40.0%
GTTGATTGCAATTCTTGTGG+TGG - chr7_1:12346038-12346057 Msa1009940:CDS 40.0%
!!! TCACCCACATAGCTTTTTTG+AGG + chr7_1:12346143-12346162 None:intergenic 40.0%
TTGGAAAGGGTTGAAATTGG+TGG - chr7_1:12346357-12346376 Msa1009940:intron 40.0%
AGAGGCTCAAGATCTTGAAT+TGG + chr7_1:12346428-12346447 None:intergenic 40.0%
AGATCTTGAGCCTCTTGAAT+TGG - chr7_1:12346433-12346452 Msa1009940:intron 40.0%
AGCCTCTTGAATTGGTATTG+AGG - chr7_1:12346441-12346460 Msa1009940:intron 40.0%
! ACAACTTTGGGAAAGTTAGG+GGG + chr7_1:12346584-12346603 None:intergenic 40.0%
! CACAACTTTGGGAAAGTTAG+GGG + chr7_1:12346585-12346604 None:intergenic 40.0%
GGGGTCAAAATCACAACTTT+GGG + chr7_1:12346596-12346615 None:intergenic 40.0%
AGGGGTCAAAATCACAACTT+TGG + chr7_1:12346597-12346616 None:intergenic 40.0%
ACAGTTGCAAAACTTATGGG+AGG + chr7_1:12346640-12346659 None:intergenic 40.0%
CTACCACAGTTGCAAAACTT+AGG - chr7_1:12346771-12346790 Msa1009940:intron 40.0%
ACCACAGTTGCAAAACTTAG+GGG - chr7_1:12346773-12346792 Msa1009940:intron 40.0%
!! GCGCGGTTTTGTAGTTTTTT+TGG - chr7_1:12346796-12346815 Msa1009940:intron 40.0%
!!! CGGTATTTTTGGTGTAAACC+GGG - chr7_1:12346912-12346931 Msa1009940:intron 40.0%
!!! TATTTTTGGTGTAAACCGGG+TGG - chr7_1:12346915-12346934 Msa1009940:intron 40.0%
! CGATTTTCAAACCAAGGTTC+TGG + chr7_1:12347003-12347022 None:intergenic 40.0%
AAAACAGCATGTCAGTCATG+TGG + chr7_1:12347111-12347130 None:intergenic 40.0%
!!! CATGCTGTTTTTGCCATAGT+TGG - chr7_1:12347120-12347139 Msa1009940:intron 40.0%
GGTAAAGAGTTATACGGACA+TGG + chr7_1:12347439-12347458 None:intergenic 40.0%
CATGCTTTCTTGCTAGGAAA+CGG - chr7_1:12347511-12347530 Msa1009940:intron 40.0%
! GAATAGGTCATGGTTGATTC+TGG + chr7_1:12348217-12348236 None:intergenic 40.0%
ACCTATTCAAGACCTCCAAA+AGG - chr7_1:12348229-12348248 Msa1009940:CDS 40.0%
!! TCCTTTTGGAGGTCTTGAAT+AGG + chr7_1:12348233-12348252 None:intergenic 40.0%
! AGGTCAATTGTTCCTTTTGG+AGG + chr7_1:12348244-12348263 None:intergenic 40.0%
CTCTATCCATTGGAGAGAAA+TGG + chr7_1:12348297-12348316 None:intergenic 40.0%
ACTCTTGCTTCTCTATCCAT+TGG + chr7_1:12348307-12348326 None:intergenic 40.0%
ATAGAGAAGCAAGAGTCCTA+AGG - chr7_1:12348311-12348330 Msa1009940:CDS 40.0%
! GCAAATCGACCTTTTATACG+CGG + chr7_1:12348415-12348434 None:intergenic 40.0%
! CAAACATGCACTTAGTTCTC+TGG + chr7_1:12348549-12348568 None:intergenic 40.0%
TGCTCCAACATTTGTGGAGA+GGG + chr7_1:12345402-12345421 None:intergenic 45.0%
TTGCTCCAACATTTGTGGAG+AGG + chr7_1:12345403-12345422 None:intergenic 45.0%
TTTACAAAGAAAAGCCGCCG+GGG + chr7_1:12345637-12345656 None:intergenic 45.0%
CTTTACAAAGAAAAGCCGCC+GGG + chr7_1:12345638-12345657 None:intergenic 45.0%
GCTTTACAAAGAAAAGCCGC+CGG + chr7_1:12345639-12345658 None:intergenic 45.0%
GTGGATATCAGCATCACAAG+TGG + chr7_1:12345682-12345701 None:intergenic 45.0%
GTCCCGATTCTTCCAATTTC+CGG - chr7_1:12345735-12345754 Msa1009940:three_prime_UTR 45.0%
CCGTAAAGGTAACCGGAAAT+TGG + chr7_1:12345750-12345769 None:intergenic 45.0%
CTTCATCTTCGGCACCTAAA+AGG + chr7_1:12345785-12345804 None:intergenic 45.0%
!!! CTTTTAGGTGCCGAAGATGA+AGG - chr7_1:12345783-12345802 Msa1009940:three_prime_UTR 45.0%
TGTTCCTGTTCAACAACAGC+AGG - chr7_1:12346169-12346188 Msa1009940:intron 45.0%
TGTACCTGCTGTTGTTGAAC+AGG + chr7_1:12346176-12346195 None:intergenic 45.0%
GAGTTTGAGTCTTCCAAAGC+TGG - chr7_1:12346215-12346234 Msa1009940:intron 45.0%
GCTGGATTCAGTTACAATGG+TGG - chr7_1:12346233-12346252 Msa1009940:intron 45.0%
AGCGTAGACCGAGTCAAAAT+TGG - chr7_1:12346734-12346753 Msa1009940:intron 45.0%
!! ACCGAGTCAAAATTGGCCTT+GGG - chr7_1:12346741-12346760 Msa1009940:intron 45.0%
CCACAGTTGCAAAACTTAGG+GGG - chr7_1:12346774-12346793 Msa1009940:intron 45.0%
GGGGGCCAAAATCACAAATT+TGG - chr7_1:12346817-12346836 Msa1009940:intron 45.0%
TAGATTCGAACCCAGAACCT+TGG - chr7_1:12346989-12347008 Msa1009940:intron 45.0%
AGCATGTCAGTCATGTGGAA+AGG + chr7_1:12347106-12347125 None:intergenic 45.0%
CACGAAACACTCTTCGGATT+AGG - chr7_1:12347292-12347311 Msa1009940:intron 45.0%
! GTCAGTGTTCGAGTTCTATC+TGG - chr7_1:12347410-12347429 Msa1009940:intron 45.0%
TTGGGGGAATTAGATTCTGG+AGG + chr7_1:12347761-12347780 None:intergenic 45.0%
AGTGGACAAGTCACTTGTTC+AGG - chr7_1:12347844-12347863 Msa1009940:intron 45.0%
TGGAGGTCTTGAATAGGTCA+TGG + chr7_1:12348227-12348246 None:intergenic 45.0%
GTCTTCCCATTTCTCTCCAA+TGG - chr7_1:12348288-12348307 Msa1009940:CDS 45.0%
GGAAAGCCTATGCTGAAACT+CGG - chr7_1:12348389-12348408 Msa1009940:CDS 45.0%
AGAAAAATGACGGTGACACG+AGG + chr7_1:12348598-12348617 None:intergenic 45.0%
CTCCAACATTTGTGGAGAGG+GGG + chr7_1:12345400-12345419 None:intergenic 50.0%
GCTCCAACATTTGTGGAGAG+GGG + chr7_1:12345401-12345420 None:intergenic 50.0%
! TTGCAAGAGGGTTAGCAGAG+TGG + chr7_1:12345701-12345720 None:intergenic 50.0%
GAAGAATCGGGACACGTTGA+TGG + chr7_1:12345728-12345747 None:intergenic 50.0%
ATCTTCGGCACCTAAAAGGG+TGG + chr7_1:12345781-12345800 None:intergenic 50.0%
! GCCGAAGATGAAGGCTTTGT+CGG - chr7_1:12345792-12345811 Msa1009940:three_prime_UTR 50.0%
GCCGACAAAGCCTTCATCTT+CGG + chr7_1:12345796-12345815 None:intergenic 50.0%
! GAAGATGAAGGCTTTGTCGG+CGG - chr7_1:12345795-12345814 Msa1009940:three_prime_UTR 50.0%
GTGGAAGAAGAGGAGGATGA+AGG - chr7_1:12345840-12345859 Msa1009940:CDS 50.0%
! GACCGAGTCAAAATTGGCCT+TGG - chr7_1:12346740-12346759 Msa1009940:intron 50.0%
!!! CCCCAAGGCCAATTTTGACT+CGG + chr7_1:12346745-12346764 None:intergenic 50.0%
!! CCGAGTCAAAATTGGCCTTG+GGG - chr7_1:12346742-12346761 Msa1009940:intron 50.0%
! CCCCCTAAGTTTTGCAACTG+TGG + chr7_1:12346777-12346796 None:intergenic 50.0%
!! TCGATGGATTAGTCTCCACC+CGG + chr7_1:12346933-12346952 None:intergenic 50.0%
! TCTTCGGATTAGGCGTGTCT+TGG - chr7_1:12347302-12347321 Msa1009940:intron 50.0%
GTGTCAGACACGAGATCTGT+CGG + chr7_1:12347331-12347350 None:intergenic 50.0%
! GGGGAATTAGATTCTGGAGG+TGG + chr7_1:12347758-12347777 None:intergenic 50.0%
GAAACTCGGCCGCGTATAAA+AGG - chr7_1:12348403-12348422 Msa1009940:CDS 50.0%
TGGAGAGGGGGAGTGATGAA+TGG + chr7_1:12345388-12345407 None:intergenic 55.0%
CTCCCCCTCTCCACAAATGT+TGG - chr7_1:12345395-12345414 Msa1009940:three_prime_UTR 55.0%
CACAGCCACCATAAGGTCTG+CGG - chr7_1:12345446-12345465 Msa1009940:three_prime_UTR 55.0%
CATAAGGTCTGCGGCAACGT+GGG - chr7_1:12345455-12345474 Msa1009940:three_prime_UTR 55.0%
! GGTTTTCTGCCGCGCAGATT+CGG - chr7_1:12345515-12345534 Msa1009940:three_prime_UTR 55.0%
!! GTTGATGGCGGCTTGCAAGA+GGG + chr7_1:12345713-12345732 None:intergenic 55.0%
! GAATCGGGACACGTTGATGG+CGG + chr7_1:12345725-12345744 None:intergenic 55.0%
CGGAGGACCGTAAAGGTAAC+CGG + chr7_1:12345757-12345776 None:intergenic 55.0%
CGGTTACCTTTACGGTCCTC+CGG - chr7_1:12345755-12345774 Msa1009940:three_prime_UTR 55.0%
CTGTGAGGTGGAAGAAGAGG+AGG - chr7_1:12345833-12345852 Msa1009940:CDS 55.0%
AGACACGTGGCACCTCACTT+AGG - chr7_1:12346701-12346720 Msa1009940:intron 55.0%
GACACGTGGCACCTCACTTA+GGG - chr7_1:12346702-12346721 Msa1009940:intron 55.0%
!!! CTGTGGTAGTTTTGGCCCCA+AGG + chr7_1:12346760-12346779 None:intergenic 55.0%
GTTGCAAAACTTAGGGGGCG+CGG - chr7_1:12346779-12346798 Msa1009940:intron 55.0%
TATGGTGGCTGTGGCTGAGG+TGG + chr7_1:12345439-12345458 None:intergenic 60.0%
CCTTATGGTGGCTGTGGCTG+AGG + chr7_1:12345442-12345461 None:intergenic 60.0%
CCTCAGCCACAGCCACCATA+AGG - chr7_1:12345439-12345458 Msa1009940:three_prime_UTR 60.0%
CGCAGACCTTATGGTGGCTG+TGG + chr7_1:12345448-12345467 None:intergenic 60.0%
CGTTGCCGCAGACCTTATGG+TGG + chr7_1:12345454-12345473 None:intergenic 60.0%
CCACGTTGCCGCAGACCTTA+TGG + chr7_1:12345457-12345476 None:intergenic 60.0%
CCATAAGGTCTGCGGCAACG+TGG - chr7_1:12345454-12345473 Msa1009940:three_prime_UTR 60.0%
! AGCATGTGACACGTGCCGCT+CGG - chr7_1:12345482-12345501 Msa1009940:three_prime_UTR 60.0%
GTGGATGCGTGCATCACACG+CGG + chr7_1:12345553-12345572 None:intergenic 60.0%
GTGTGATGCACGCATCCACG+CGG - chr7_1:12345554-12345573 Msa1009940:three_prime_UTR 60.0%
GTTCGTGCCTCGAGGCTACA+CGG + chr7_1:12345584-12345603 None:intergenic 60.0%
!! CGTTGATGGCGGCTTGCAAG+AGG + chr7_1:12345714-12345733 None:intergenic 60.0%
TCGGCACCTAAAAGGGTGGC+CGG + chr7_1:12345777-12345796 None:intergenic 60.0%
! GATGAAGGCTTTGTCGGCGG+TGG - chr7_1:12345798-12345817 Msa1009940:three_prime_UTR 60.0%
TTTGTCGGCGGTGGTTGTGG+TGG - chr7_1:12345807-12345826 Msa1009940:exon 60.0%
CGGCTGTGAGGTGGAAGAAG+AGG - chr7_1:12345830-12345849 Msa1009940:CDS 60.0%
CTGACGTGGCACCCTAAGTG+AGG + chr7_1:12346716-12346735 None:intergenic 60.0%
!! TGACTCGGTCTACGCTGACG+TGG + chr7_1:12346730-12346749 None:intergenic 60.0%
ACGCGGCCGAGTTTCAGCAT+AGG + chr7_1:12348398-12348417 None:intergenic 60.0%
! CTGTGGCTGAGGTGGTGGTG+AGG + chr7_1:12345431-12345450 None:intergenic 65.0%
GCGGCAGAAAACCGCGCATG+GGG + chr7_1:12345508-12345527 None:intergenic 65.0%
CGCGGCAGAAAACCGCGCAT+GGG + chr7_1:12345509-12345528 None:intergenic 65.0%
AGGCTACACGGTTTGCCGCG+TGG + chr7_1:12345572-12345591 None:intergenic 65.0%
CGGCAAACCGTGTAGCCTCG+AGG - chr7_1:12345574-12345593 Msa1009940:three_prime_UTR 65.0%
CTCGAGGCACGAACGCGTCT+GGG - chr7_1:12345590-12345609 Msa1009940:three_prime_UTR 65.0%
CGAACGCGTCTGGGTCTGTG+AGG - chr7_1:12345599-12345618 Msa1009940:three_prime_UTR 65.0%
! GGTCCTCCGGCCACCCTTTT+AGG - chr7_1:12345768-12345787 Msa1009940:three_prime_UTR 65.0%
GCACCTAAAAGGGTGGCCGG+AGG + chr7_1:12345774-12345793 None:intergenic 65.0%
! GGCTTTGTCGGCGGTGGTTG+TGG - chr7_1:12345804-12345823 Msa1009940:exon 65.0%
!! TGGTTGTGGTGGCGGCTGTG+AGG - chr7_1:12345818-12345837 Msa1009940:exon 65.0%
!! TTGTGGTGGCGGCTGTGAGG+TGG - chr7_1:12345821-12345840 Msa1009940:CDS 65.0%
GGTGGCTGTGGCTGAGGTGG+TGG + chr7_1:12345436-12345455 None:intergenic 70.0%
AAACCGCGCATGGGGCCGAG+CGG + chr7_1:12345500-12345519 None:intergenic 70.0%
GCGCGGCAGAAAACCGCGCA+TGG + chr7_1:12345510-12345529 None:intergenic 70.0%
CCAGACGCGTTCGTGCCTCG+AGG + chr7_1:12345592-12345611 None:intergenic 70.0%
CCTCGAGGCACGAACGCGTC+TGG - chr7_1:12345589-12345608 Msa1009940:three_prime_UTR 70.0%
GGGTGGCCGGAGGACCGTAA+AGG + chr7_1:12345764-12345783 None:intergenic 70.0%
GTCGGCGGTGGTTGTGGTGG+CGG - chr7_1:12345810-12345829 Msa1009940:exon 70.0%
TGAGGCCTGCGAGCGTGCCC+CGG - chr7_1:12345617-12345636 Msa1009940:three_prime_UTR 75.0%
!! GTGCCGCTCGGCCCCATGCG+CGG - chr7_1:12345494-12345513 Msa1009940:three_prime_UTR 80.0%
! GGCCTGCGAGCGTGCCCCGG+CGG - chr7_1:12345620-12345639 Msa1009940:three_prime_UTR 85.0%
! AGCCGCCGGGGCACGCTCGC+AGG + chr7_1:12345625-12345644 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 12345305 12349039 12345305 ID=Msa1009940;Name=Msa1009940
chr7_1 mRNA 12345305 12349039 12345305 ID=Msa1009940-mRNA-1;Parent=Msa1009940;Name=Msa1009940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=106|1|1|1|1|1|2|514|401
chr7_1 exon 12345305 12346163 12345305 ID=Msa1009940-mRNA-1:exon:3200;Parent=Msa1009940-mRNA-1
chr7_1 exon 12348073 12349039 12348073 ID=Msa1009940-mRNA-1:exon:3199;Parent=Msa1009940-mRNA-1
chr7_1 five_prime_UTR 12348934 12349039 12348934 ID=Msa1009940-mRNA-1:five_prime_utr;Parent=Msa1009940-mRNA-1
chr7_1 CDS 12348073 12348933 12348073 ID=Msa1009940-mRNA-1:cds;Parent=Msa1009940-mRNA-1
chr7_1 CDS 12345819 12346163 12345819 ID=Msa1009940-mRNA-1:cds;Parent=Msa1009940-mRNA-1
chr7_1 three_prime_UTR 12345305 12345818 12345305 ID=Msa1009940-mRNA-1:three_prime_utr;Parent=Msa1009940-mRNA-1
Gene Sequence

>Msa1009940

ATGTTGGAGCAAGATTTCCTCACCACCACCTCAGCCACAGCCACCATAAGGTCTGCGGCAACGTGGGCACGAGCATGTGACACGTGCCGCTCGGCCCCATGCGCGGTTTTCTGCCGCGCAGATTCGGCATATTTATGTGCCGCGTGTGATGCACGCATCCACGCGGCAAACCGTGTAGCCTCGAGGCACGAACGCGTCTGGGTCTGTGAGGCCTGCGAGCGTGCCCCGGCGGCTTTTCTTTGTAAAGCTGATGCTGCTTCTCTTTGCTCCACTTGTGATGCTGATATCCACTCTGCTAACCCTCTTGCAAGCCGCCATCAACGTGTCCCGATTCTTCCAATTTCCGGTTACCTTTACGGTCCTCCGGCCACCCTTTTAGGTGCCGAAGATGAAGGCTTTGTCGGCGGTGGTTGTGGTGGCGGCTGTGAGGTGGAAGAAGAGGAGGATGAAGGTGTTGATCATGATATGGAAGATGAAAATGAAGCTGCTTCATGGCTTTTGTTGAATCCTCTAAAGAACATCAATAACAATAGTAACAACAATAACAACAACATTAGCAATGGTCATAATCAAGAGGGTAATAATGGATATTTGTTTAGTGGAGAAGTTGATGAGTACTTGGACCTTGTTGATTGCAATTCTTGTGGTGGTGATGAAAACACTTTCAATACCAATAATACTCATCATGATGAGTATAGTCAACAACAACAACAAGATCATTATGGTGTTCCTCAAAAAAGCTATGTGGGTGATAGTGTTGTTCCTGTTCAACAACAGCAGGTACAGAATTTTCAACTTGGGTTGGAGTTTGAGTCTTCCAAAGCTGGATTCAGTTACAATGGTGGTTCTATTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCAGAATCAACCATGACCTATTCAAGACCTCCAAAAGGAACAATTGACCTATTTTCAGGTCCTTCTATTCAAATGTCTTCCCATTTCTCTCCAATGGATAGAGAAGCAAGAGTCCTAAGGTACAGAGAGAAAAAGAAGACAAGAAAATTTGAGAAAACAATTAGGTATGCTTCAAGGAAAGCCTATGCTGAAACTCGGCCGCGTATAAAAGGTCGATTTGCGAAGAGAACAGATGTAGAAGCTGAAGTTGATCAAATGTTTTCCACATCACTAATTACAGAAGTTGGATATGGAATTGTTCCCTCTTTCTGA

Protein sequence

>Msa1009940

MLEQDFLTTTSATATIRSAATWARACDTCRSAPCAVFCRADSAYLCAACDARIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSTCDADIHSANPLASRHQRVPILPISGYLYGPPATLLGAEDEGFVGGGCGGGCEVEEEEDEGVDHDMEDENEAASWLLLNPLKNINNNSNNNNNNISNGHNQEGNNGYLFSGEVDEYLDLVDCNSCGGDENTFNTNNTHHDEYSQQQQQDHYGVPQKSYVGDSVVPVQQQQVQNFQLGLEFESSKAGFSYNGGSISQSVSVSSMDVGVVPESTMTYSRPPKGTIDLFSGPSIQMSSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTSLITEVGYGIVPSF*