AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0111110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0111110 MtrunA17_Chr1g0169361 92.132 788 8 2 1 738 1 784 0.0 1443
Msa0111110 MtrunA17_Chr6g0465161 37.026 686 349 17 83 738 78 710 9.81e-134 412
Msa0111110 MtrunA17_Chr4g0012061 43.041 467 255 5 82 543 100 560 1.89e-131 406
Msa0111110 MtrunA17_Chr7g0230671 37.000 600 331 10 82 662 88 659 2.44e-124 387
Msa0111110 MtrunA17_Chr3g0136721 36.609 519 293 8 128 631 129 626 9.05e-103 331
Msa0111110 MtrunA17_Chr1g0148121 36.900 542 306 12 31 556 25 546 2.11e-101 325
Msa0111110 MtrunA17_Chr1g0199921 32.317 492 299 8 76 539 132 617 4.10e-78 267
Msa0111110 MtrunA17_Chr3g0120791 33.333 492 288 10 39 512 111 580 3.61e-66 232
Msa0111110 MtrunA17_Chr8g0382921 32.754 403 235 9 137 506 198 597 8.18e-56 204
Msa0111110 MtrunA17_Chr3g0129101 32.374 417 244 9 123 506 195 606 1.95e-55 202
Msa0111110 MtrunA17_Chr5g0428451 26.053 380 242 6 137 483 128 501 8.01e-34 136
Msa0111110 MtrunA17_Chr4g0057941 28.912 294 168 9 127 397 62 337 2.37e-28 119
Msa0111110 MtrunA17_Chr1g0147481 26.211 351 226 10 94 422 82 421 3.74e-23 105
Msa0111110 MtrunA17_Chr3g0113361 25.183 409 245 11 124 489 76 466 3.41e-22 101
Msa0111110 MtrunA17_Chr4g0048521 27.551 294 176 8 145 409 229 514 7.74e-22 100
Msa0111110 MtrunA17_Chr2g0281061 26.102 295 192 7 137 409 218 508 2.73e-20 95.9
Msa0111110 MtrunA17_Chr8g0360981 25.430 291 186 6 137 400 210 496 6.76e-19 91.3
Msa0111110 MtrunA17_Chr5g0433911 26.071 280 172 9 148 409 77 339 2.09e-17 86.3
Msa0111110 MtrunA17_Chr1g0193751 25.694 288 190 9 147 423 240 514 2.39e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0111110 AT3G24190.1 74.780 797 138 6 1 738 1 793 0.0 1156
Msa0111110 AT1G79600.1 42.308 468 259 5 82 544 95 556 2.17e-129 401
Msa0111110 AT1G71810.1 35.286 683 356 17 83 738 69 692 1.47e-124 387
Msa0111110 AT4G31390.1 34.974 569 326 10 14 556 32 582 1.52e-101 327
Msa0111110 AT5G24970.3 36.486 518 277 9 133 623 136 628 2.80e-100 325
Msa0111110 AT5G24970.2 36.486 518 277 9 133 623 175 667 1.54e-99 324
Msa0111110 AT5G24970.1 35.907 518 277 10 133 623 136 625 5.70e-96 313
Msa0111110 AT4G31390.2 33.040 569 312 10 14 556 32 557 2.28e-91 299
Msa0111110 AT4G31390.3 39.494 395 222 6 167 556 1 383 2.14e-88 286
Msa0111110 AT2G39190.2 33.678 484 290 8 79 538 142 618 4.62e-81 276
Msa0111110 AT3G07700.1 34.867 413 253 7 119 522 171 576 3.29e-66 233
Msa0111110 AT3G07700.2 34.867 413 253 7 119 522 171 576 3.29e-66 233
Msa0111110 AT3G07700.4 34.867 413 253 7 119 522 171 576 3.29e-66 233
Msa0111110 AT3G07700.3 33.784 444 245 10 119 522 171 605 8.60e-62 221
Msa0111110 AT5G64940.1 33.333 405 232 8 137 506 222 623 2.12e-54 200
Msa0111110 AT5G64940.2 33.333 405 232 8 137 506 222 623 2.12e-54 200
Msa0111110 AT5G05200.1 26.579 380 240 6 137 483 129 502 5.40e-33 134
Msa0111110 AT2G39190.1 35.931 231 137 6 79 306 142 364 4.89e-31 125
Msa0111110 AT4G24810.6 25.907 386 253 11 127 491 16 389 5.73e-31 127
Msa0111110 AT4G24810.1 25.907 386 253 11 127 491 16 389 5.73e-31 127
Msa0111110 AT4G24810.4 28.028 289 182 7 127 397 16 296 1.00e-30 123
Msa0111110 AT4G24810.5 28.028 289 182 7 127 397 16 296 1.46e-30 122
Msa0111110 AT4G24810.2 25.907 386 253 11 127 491 59 432 1.86e-30 126
Msa0111110 AT4G24810.3 25.700 393 252 12 127 491 16 396 3.46e-29 122
Msa0111110 AT5G50330.1 25.949 316 204 7 127 422 59 364 8.58e-27 115
Msa0111110 AT1G65950.1 27.570 428 252 18 124 529 89 480 3.54e-24 107
Msa0111110 AT1G65950.2 31.884 276 161 12 124 385 89 351 5.54e-24 106
Msa0111110 AT5G24810.1 26.748 329 193 9 119 422 90 395 1.94e-21 100
Msa0111110 AT1G61640.3 27.055 292 170 10 145 403 221 502 1.96e-21 99.8
Msa0111110 AT1G61640.1 27.055 292 170 10 145 403 221 502 4.23e-21 98.6
Msa0111110 AT5G50330.2 24.051 316 194 8 127 422 59 348 6.77e-21 97.1
Msa0111110 AT1G11390.1 25.260 289 188 6 145 409 224 508 9.46e-21 97.4
Msa0111110 AT2G40090.1 28.882 322 196 11 125 421 79 392 1.15e-20 97.1
Msa0111110 AT5G24810.2 25.797 345 184 10 134 422 98 426 3.09e-18 90.1
Msa0111110 AT4G01660.1 27.397 292 180 11 147 423 238 512 2.00e-16 84.0
Msa0111110 AT1G61640.2 28.750 160 104 3 145 297 221 377 1.11e-12 71.6

Find 236 sgRNAs with CRISPR-Local

Find 613 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACTTTGCCCTTATAATT+AGG 0.089687 1_3:-24591498 Msa0111110:CDS
GCTTTACGTTACACTATATA+TGG 0.194317 1_3:-24590748 Msa0111110:CDS
TCAAGAACTCCAGCACTTTC+TGG 0.201641 1_3:+24589533 None:intergenic
CCCCGATAGCCCTAATTATA+AGG 0.235389 1_3:+24591488 None:intergenic
AGCTAGTATTACTGCATATT+GGG 0.247428 1_3:-24597411 Msa0111110:CDS
ATCCTCTCCACCTCCACTTT+TGG 0.254419 1_3:+24590654 None:intergenic
ATACTTTGCCCTTATAATTA+GGG 0.262467 1_3:-24591497 Msa0111110:CDS
ATCTCTCGGACAGGTATATA+AGG 0.270512 1_3:-24595526 Msa0111110:CDS
ATTAATGAACAAGGGTAAAA+TGG 0.273780 1_3:+24589099 None:intergenic
AAACCTGTCAACGGTGTCTC+TGG 0.278838 1_3:-24598231 Msa0111110:CDS
AATTAGGGCTATCGGGGTTT+TGG 0.280919 1_3:-24591482 Msa0111110:CDS
AAGGGCCGCCTGAAGGAAAA+TGG 0.288141 1_3:-24595507 Msa0111110:CDS
TATATTATATTTATATATAC+TGG 0.288472 1_3:+24589123 None:intergenic
AATAGCCAGCATAATTGATT+TGG 0.293002 1_3:+24589020 None:intergenic
GTAGGTACCATACCGAAAAT+AGG 0.294048 1_3:+24589628 None:intergenic
CAGCTAGTATTACTGCATAT+TGG 0.297042 1_3:-24597412 Msa0111110:CDS
AATTATACCTGTGCAATATA+TGG 0.302271 1_3:+24591406 None:intergenic
ACGTGAAATTGTGACATCTT+TGG 0.305343 1_3:-24596353 Msa0111110:CDS
AGAACTTCTGCCAGTGTTGC+CGG 0.306484 1_3:-24589304 Msa0111110:CDS
GTATACTTGCTGTAAGTTCT+TGG 0.331390 1_3:+24593960 None:intergenic
CCCTTATAATTAGGGCTATC+GGG 0.332300 1_3:-24591489 Msa0111110:CDS
CGTGAAATTGTGACATCTTT+GGG 0.332945 1_3:-24596352 Msa0111110:CDS
GGATCTAAATTGACTCCATC+TGG 0.344181 1_3:+24591649 None:intergenic
TTATTTCAGCTGCTTGATAC+TGG 0.344397 1_3:-24593075 Msa0111110:intron
TTCTTAGCAGATTATCTTCT+CGG 0.345784 1_3:-24589254 Msa0111110:CDS
AACTTTATCCTCTTCAGTTA+TGG 0.348424 1_3:+24589570 None:intergenic
CTAATTATAAGGGCAAAGTA+TGG 0.349214 1_3:+24591499 None:intergenic
TTTAACGAAGTCTTTCACTA+TGG 0.351984 1_3:+24591684 None:intergenic
GTCTTTGACCAGGCTTTAGA+AGG 0.356423 1_3:-24591604 Msa0111110:CDS
TGTGGGTGGATTAAGCATTA+AGG 0.366442 1_3:+24589182 None:intergenic
TTGACCGACGATCAAAAGTA+TGG 0.371660 1_3:-24591751 Msa0111110:CDS
GAGAGAAGGTTTGGAGGGAG+TGG 0.374407 1_3:+24598518 None:intergenic
GTTGTTGTGACGTTGGGAAT+GGG 0.376840 1_3:+24598362 None:intergenic
GGTTGTTGTGACGTTGGGAA+TGG 0.377307 1_3:+24598361 None:intergenic
GCCCTTATAATTAGGGCTAT+CGG 0.378622 1_3:-24591490 Msa0111110:CDS
CAGGTCTTTCTTCATCATTT+CGG 0.380540 1_3:+24595124 None:intergenic
CCGGTCAGAATATCTCTTGC+CGG 0.382765 1_3:-24590593 Msa0111110:CDS
CCTGAAGGAAAATGGGGATA+TGG 0.382827 1_3:-24595499 Msa0111110:CDS
GTTGTAACCGGAGCAGGTTT+AGG 0.383753 1_3:+24598288 None:intergenic
CCATTGATTTATTCATTATC+CGG 0.385394 1_3:-24595434 Msa0111110:CDS
TACACTATATATGGGAAATC+TGG 0.386187 1_3:-24590739 Msa0111110:CDS
GCAACACTGGCAGAAGTTCT+TGG 0.389343 1_3:+24589307 None:intergenic
AGGTCTCCATTGACGTGGTT+GGG 0.391236 1_3:-24595223 Msa0111110:CDS
ACGAAGTCTTTCACTATGGC+TGG 0.396425 1_3:+24591688 None:intergenic
GTGCAGTTATTATCTGTTGC+TGG 0.398582 1_3:-24597356 Msa0111110:CDS
TTTGCAAGCACTGGCAAGAT+AGG 0.409252 1_3:+24591628 None:intergenic
CATTATCCGGAACCTTGGTT+TGG 0.410931 1_3:-24595421 Msa0111110:CDS
CCGTCAACGGTTCTTCTTCA+AGG 0.412132 1_3:-24598266 Msa0111110:CDS
AGAGACACCGTTGACAGGTT+TGG 0.413955 1_3:+24598233 None:intergenic
TATGTGAATGAAGGTGAAAA+TGG 0.419960 1_3:-24595158 Msa0111110:CDS
AGGGAGGTTGTTGTGACGTT+GGG 0.420450 1_3:+24598356 None:intergenic
TTGGAAGGGATAGCTTTAGT+AGG 0.425825 1_3:-24591463 Msa0111110:CDS
TAGGTCTCCATTGACGTGGT+TGG 0.426485 1_3:-24595224 Msa0111110:CDS
GAACCGTTGACGGTTGTAAC+CGG 0.426598 1_3:+24598276 None:intergenic
CCCCTCCACCTTCTAAAGCC+TGG 0.432654 1_3:+24591596 None:intergenic
AGCTTGGGCTTATTACTAAC+CGG 0.433633 1_3:-24590612 Msa0111110:CDS
TGGAAAGCTACCGGCGGCAA+TGG 0.437249 1_3:+24595657 None:intergenic
GGTCCAGCATACATAAAACT+TGG 0.438925 1_3:-24596331 Msa0111110:CDS
GGCTCTTCGAAAATTTCCTC+AGG 0.440365 1_3:-24595400 Msa0111110:CDS
CCCGATAGCCCTAATTATAA+GGG 0.441218 1_3:+24591489 None:intergenic
GATAATCTGCTAAGAACATC+AGG 0.444598 1_3:+24589261 None:intergenic
GCCCGTGTTTCCACTGGCTG+CGG 0.444691 1_3:+24590544 None:intergenic
TCATCAACAATGGCAAAATC+AGG 0.448007 1_3:+24591436 None:intergenic
AGAGGATCTGAAAGGGAGTA+TGG 0.453042 1_3:-24590638 Msa0111110:CDS
GCTGCAGGTGACAGTATATC+AGG 0.453190 1_3:+24596289 None:intergenic
AAACTTGCAATACTTGACTT+TGG 0.456974 1_3:-24593000 Msa0111110:intron
GAAGAGCCAAACCAAGGTTC+CGG 0.457788 1_3:+24595415 None:intergenic
TTCTCGGGTTGCGTGGGATG+TGG 0.458420 1_3:-24597324 Msa0111110:CDS
GAGGTGGAGAGGATCTGAAA+GGG 0.458984 1_3:-24590645 Msa0111110:CDS
TGCAACTCTGTCATTGCTGC+AGG 0.460173 1_3:+24596274 None:intergenic
ATAACCAGAATGAGGTTGCC+AGG 0.461543 1_3:-24596387 Msa0111110:intron
TCTGTCAAGCACATCTAGTC+AGG 0.463598 1_3:-24589497 Msa0111110:intron
ATTGTGTATATTTGACAGAA+TGG 0.465438 1_3:-24589159 Msa0111110:three_prime_UTR
CTTTACGTTACACTATATAT+GGG 0.466517 1_3:-24590747 Msa0111110:CDS
CCTCGTCCAAAAGAAATTCT+CGG 0.466532 1_3:+24590482 None:intergenic
GTCGGAGAATTAGTTAATGT+TGG 0.469559 1_3:-24593870 Msa0111110:CDS
ATTTGCAGATGATGTGGCTA+TGG 0.471517 1_3:-24595743 Msa0111110:CDS
AGTCATCTGCTACCTAAAAC+AGG 0.471762 1_3:-24593847 Msa0111110:intron
AGGGCTGCCCGTGTTTCCAC+TGG 0.474496 1_3:+24590538 None:intergenic
GTGAAAGACTTCGTTAAACT+TGG 0.475881 1_3:-24591679 Msa0111110:CDS
TATTTATATATACTGGTATG+TGG 0.478038 1_3:+24589130 None:intergenic
TTCGGTATGGTACCTACCAT+TGG 0.478269 1_3:-24589622 Msa0111110:CDS
CTCCATTGACGTGGTTGGGT+TGG 0.481448 1_3:-24595219 Msa0111110:CDS
AGGGCCGCCTGAAGGAAAAT+GGG 0.482279 1_3:-24595506 Msa0111110:CDS
AACCAACCCAACCACGTCAA+TGG 0.482943 1_3:+24595217 None:intergenic
CCTTGAAGAAGAACCGTTGA+CGG 0.483993 1_3:+24598266 None:intergenic
TTGACGGTTGTAACCGGAGC+AGG 0.484211 1_3:+24598282 None:intergenic
AGAGAGAGAGAAGGTTTGGA+GGG 0.485460 1_3:+24598513 None:intergenic
GTAACTGTCTCGAGAACAAA+AGG 0.487145 1_3:+24595456 None:intergenic
AACCTGTCAACGGTGTCTCT+GGG 0.487214 1_3:-24598230 Msa0111110:CDS
ACACCGTTGACAGGTTTGGC+AGG 0.488797 1_3:+24598237 None:intergenic
TTTCATGCTGACCCTCACCC+GGG 0.493387 1_3:-24593048 Msa0111110:CDS
CCGGATAATGAATAAATCAA+TGG 0.495772 1_3:+24595434 None:intergenic
TTTATTACAGCTGCCAAAAG+TGG 0.497079 1_3:-24590667 Msa0111110:CDS
CACCGATCCTAAACCTGCTC+CGG 0.497252 1_3:-24598295 Msa0111110:CDS
GACCAGGCTTTAGAAGGTGG+AGG 0.497384 1_3:-24591598 Msa0111110:CDS
TGCATTCTGAACTCCTAGTA+AGG 0.499806 1_3:+24589654 None:intergenic
GTAAGAATTATGTCCTTACT+AGG 0.500477 1_3:-24589667 Msa0111110:CDS
AAAGGGAGTATGGCTGAGCT+TGG 0.501167 1_3:-24590628 Msa0111110:CDS
TAGGTACCATACCGAAAATA+GGG 0.501824 1_3:+24589629 None:intergenic
GGTTGGGTTGGTTGACGAGT+GGG 0.502534 1_3:-24595207 Msa0111110:CDS
TCTTAGCAGATTATCTTCTC+GGG 0.503708 1_3:-24589253 Msa0111110:CDS
TAATTATAAGGGCAAAGTAT+GGG 0.504028 1_3:+24591500 None:intergenic
CGGTGGCGACAGCGGAGATA+CGG 0.504988 1_3:+24598313 None:intergenic
GCAGAGATGCCCGGCAACAC+TGG 0.505198 1_3:+24589294 None:intergenic
CGGTCAGAATATCTCTTGCC+GGG 0.507660 1_3:-24590592 Msa0111110:CDS
TTTATCCTCTTCAGTTATGG+TGG 0.508378 1_3:+24589573 None:intergenic
GGAAAGCTACCGGCGGCAAT+GGG 0.509268 1_3:+24595658 None:intergenic
GTGCTGGAGTTCTTGACTGC+AGG 0.510421 1_3:-24589526 Msa0111110:CDS
GGAGGGTTCTTACAACAGAA+TGG 0.511423 1_3:-24593932 Msa0111110:CDS
GGAGGTGGAGAGGATCTGAA+AGG 0.512007 1_3:-24590646 Msa0111110:CDS
TTCACGTATTTCAATAGCCC+TGG 0.512127 1_3:+24596369 None:intergenic
AAGAACGGCGGCGACGGAGA+GGG 0.512533 1_3:+24598337 None:intergenic
TGCTGTGACAAGGGAACAAA+TGG 0.515122 1_3:-24589689 Msa0111110:CDS
AACCGCAGCCAGTGGAAACA+CGG 0.515912 1_3:-24590546 Msa0111110:CDS
ATAAGCCAAATCAATTATGC+TGG 0.516259 1_3:-24589025 Msa0111110:three_prime_UTR
CAATATGCAGTAATACTAGC+TGG 0.516377 1_3:+24597413 None:intergenic
AATATGATCCGCACTCCTGA+TGG 0.516841 1_3:-24593024 Msa0111110:CDS
TGTCAAATATACACAATTGT+GGG 0.517727 1_3:+24589165 None:intergenic
GCTCTAATTGAAGAGGAACT+TGG 0.518860 1_3:-24595721 Msa0111110:CDS
TTACTGATAGAGACTCTTGA+CGG 0.519048 1_3:-24590794 Msa0111110:intron
GAACTTCTGCCAGTGTTGCC+GGG 0.520134 1_3:-24589303 Msa0111110:CDS
CTGTCAAATATACACAATTG+TGG 0.521036 1_3:+24589164 None:intergenic
GCTTGCAAAGGTCTTTGACC+AGG 0.523145 1_3:-24591614 Msa0111110:CDS
ACCCCAGAGACACCGTTGAC+AGG 0.523907 1_3:+24598228 None:intergenic
CGGATCATATTCCCCGGGTG+AGG 0.524430 1_3:+24593036 None:intergenic
TCAAAGACCTTTGCAAGCAC+TGG 0.524525 1_3:+24591619 None:intergenic
GAATGGGAGGAGCGGAGTAA+AGG 0.525012 1_3:+24598378 None:intergenic
TCTCTCGGACAGGTATATAA+GGG 0.528745 1_3:-24595525 Msa0111110:CDS
TTATTCATTATCCGGAACCT+TGG 0.531153 1_3:-24595426 Msa0111110:CDS
TCCTTCATTTGCAGATGATG+TGG 0.531156 1_3:-24595749 Msa0111110:CDS
GATGTTACAGACTGGAATCC+CGG 0.531571 1_3:+24590574 None:intergenic
CGGATGAATCCCCTCGGCTA+AGG 0.532282 1_3:-24590774 Msa0111110:CDS
TTTGACCAGGCTTTAGAAGG+TGG 0.532307 1_3:-24591601 Msa0111110:CDS
AATTGCTCATCTCATCCATC+GGG 0.532594 1_3:-24591716 Msa0111110:CDS
AAACATCAACTTTCAGGAGC+TGG 0.534626 1_3:-24591569 Msa0111110:CDS
ACCAGGCTTTAGAAGGTGGA+GGG 0.538065 1_3:-24591597 Msa0111110:CDS
GTGGGATGTGGTTAACAAGA+AGG 0.539335 1_3:-24597312 Msa0111110:CDS
GCTACCGGCGGCAATGGGAG+AGG 0.540075 1_3:+24595663 None:intergenic
AAACTTGGTTTCATCCCAGA+TGG 0.540981 1_3:-24591664 Msa0111110:CDS
TACGGTAAGAACGGCGGCGA+CGG 0.541492 1_3:+24598331 None:intergenic
GCCACATCATCTGCAAATGA+AGG 0.542980 1_3:+24595748 None:intergenic
AAGGGAGTATGGCTGAGCTT+GGG 0.543384 1_3:-24590627 Msa0111110:CDS
GTATTGGACTCACCTGTGGC+AGG 0.546086 1_3:+24595105 None:intergenic
TTATCCTCTTCAGTTATGGT+GGG 0.547564 1_3:+24589574 None:intergenic
CCGCCTGCCAAACCTGTCAA+CGG 0.550645 1_3:-24598240 Msa0111110:CDS
TGGTTGGGTTGGTTGACGAG+TGG 0.551378 1_3:-24595208 Msa0111110:CDS
TCTTCATCATTTCGGCGAAG+CGG 0.553476 1_3:+24595132 None:intergenic
ATATGCAGCATCTCTCGGAC+AGG 0.554501 1_3:-24595535 Msa0111110:intron
AAGTAGTGAATTTCTACCAT+TGG 0.554621 1_3:-24597444 Msa0111110:CDS
CAATTGCTCATCTCATCCAT+CGG 0.555375 1_3:-24591717 Msa0111110:CDS
AATTATAAGGGCAAAGTATG+GGG 0.557155 1_3:+24591501 None:intergenic
GGTATATAAGGGCCGCCTGA+AGG 0.559240 1_3:-24595514 Msa0111110:CDS
CAGAGCAAAGAAAGCAATGT+CGG 0.560609 1_3:-24593888 Msa0111110:CDS
GGGCATTGATGCTGTGACAA+GGG 0.561217 1_3:-24589698 Msa0111110:CDS
GAGGGAGGTTGTTGTGACGT+TGG 0.562689 1_3:+24598355 None:intergenic
ACCGCAGCCAGTGGAAACAC+GGG 0.564302 1_3:-24590545 Msa0111110:CDS
GGTTAACAAGAAGGTTAAAG+AGG 0.566410 1_3:-24597303 Msa0111110:intron
ATGCGAGTTGCAACGGAGCG+AGG 0.567245 1_3:+24597380 None:intergenic
CTGCACAATGCGAGTTGCAA+CGG 0.568797 1_3:+24597373 None:intergenic
ACAGCTGCCAAAAGTGGAGG+TGG 0.572452 1_3:-24590661 Msa0111110:CDS
GGATCATATTCCCCGGGTGA+GGG 0.572923 1_3:+24593037 None:intergenic
AACGGCGGCGACGGAGAGGG+AGG 0.573158 1_3:+24598340 None:intergenic
AAGAGGAACTTGGTCAGCCA+TGG 0.574058 1_3:-24595711 Msa0111110:CDS
GAAACATATGCAGCATCTCT+CGG 0.574141 1_3:-24595540 Msa0111110:intron
CCTTATAATTAGGGCTATCG+GGG 0.576502 1_3:-24591488 Msa0111110:CDS
GAACAATGTCCAGAAAGTGC+TGG 0.577732 1_3:-24589542 Msa0111110:CDS
AGCCTATCCATATATTGCAC+AGG 0.579392 1_3:-24591413 Msa0111110:intron
TGCCAAAAGTGGAGGTGGAG+AGG 0.579882 1_3:-24590656 Msa0111110:CDS
GGAGTGCGGATCATATTCCC+CGG 0.581565 1_3:+24593030 None:intergenic
CCGTTGACAGGTTTGGCAGG+CGG 0.583407 1_3:+24598240 None:intergenic
CTTACAACAGAATGGATTGA+CGG 0.585861 1_3:-24593924 Msa0111110:CDS
TATACCCACCATAACTGAAG+AGG 0.586389 1_3:-24589578 Msa0111110:CDS
ATTACAGCTGCCAAAAGTGG+AGG 0.587817 1_3:-24590664 Msa0111110:CDS
GATCTAAATTGACTCCATCT+GGG 0.588365 1_3:+24591650 None:intergenic
GTAAAGCACTCCTTAGCCGA+GGG 0.589316 1_3:+24590764 None:intergenic
TAAGAACGGCGGCGACGGAG+AGG 0.591910 1_3:+24598336 None:intergenic
GGCTTAAAGCGTCCAATGGT+AGG 0.593364 1_3:+24589610 None:intergenic
CCAGGCTTTAGAAGGTGGAG+GGG 0.593525 1_3:-24591596 Msa0111110:CDS
AGCACTTTAGCAGAGATGCC+CGG 0.594680 1_3:+24589285 None:intergenic
ATGGTGGGTATAAGAGCTGC+GGG 0.595967 1_3:+24589589 None:intergenic
GATTGACTGCAGATTGTCAA+GGG 0.597608 1_3:-24589718 Msa0111110:intron
AGGGCATTGATGCTGTGACA+AGG 0.597768 1_3:-24589699 Msa0111110:CDS
GCTATAATGATTAATGAACA+AGG 0.600527 1_3:+24589090 None:intergenic
GTTGTGACGTTGGGAATGGG+AGG 0.600686 1_3:+24598365 None:intergenic
GGCTATGGCTCTAATTGAAG+AGG 0.600972 1_3:-24595728 Msa0111110:CDS
TATCCTAAAAGGATAATCAA+AGG 0.601605 1_3:+24591525 None:intergenic
CCGGCAAGAGATATTCTGAC+CGG 0.601734 1_3:+24590593 None:intergenic
TCAACCTCTCCCATTGCCGC+CGG 0.601960 1_3:-24595667 Msa0111110:intron
ATCTCAACAACCGCAGCCAG+TGG 0.604477 1_3:-24590554 Msa0111110:CDS
TGTGGAAGTTGTTGTATGTG+TGG 0.606184 1_3:+24598555 None:intergenic
GTGGTTGTTGTAAAGAAGTG+TGG 0.608871 1_3:+24598537 None:intergenic
TACCTGTGCAATATATGGAT+AGG 0.609388 1_3:+24591411 None:intergenic
TAACCAGAATGAGGTTGCCA+GGG 0.609399 1_3:-24596386 Msa0111110:intron
TGGATAGGCTTCATCAACAA+TGG 0.610971 1_3:+24591426 None:intergenic
AACCGGAGCAGGTTTAGGAT+CGG 0.611732 1_3:+24598293 None:intergenic
TGCGGGCTTAAAGCGTCCAA+TGG 0.612041 1_3:+24589606 None:intergenic
CGGAGCAGGTTTAGGATCGG+TGG 0.613125 1_3:+24598296 None:intergenic
CTATGGCTGGATAATCCCGA+TGG 0.613934 1_3:+24591701 None:intergenic
GCTAGTATTACTGCATATTG+GGG 0.615592 1_3:-24597410 Msa0111110:CDS
CAGTTATTATCTGTTGCTGG+AGG 0.617050 1_3:-24597353 Msa0111110:CDS
TGATTGACTGCAGATTGTCA+AGG 0.617529 1_3:-24589719 Msa0111110:intron
CAGCGGAGATACGGTAAGAA+CGG 0.617745 1_3:+24598322 None:intergenic
TATCTTGCCAGTGCTTGCAA+AGG 0.619857 1_3:-24591626 Msa0111110:CDS
GAGTTAGACTATGTGAATGA+AGG 0.620549 1_3:-24595167 Msa0111110:CDS
TTTAGGATCGGTGGCGACAG+CGG 0.620973 1_3:+24598305 None:intergenic
TTCATGCTGACCCTCACCCG+GGG 0.621415 1_3:-24593047 Msa0111110:CDS
GCTCCGGTTACAACCGTCAA+CGG 0.622992 1_3:-24598279 Msa0111110:CDS
GTCCAGCATACATAAAACTT+GGG 0.627157 1_3:-24596330 Msa0111110:CDS
CAAATATACACAATTGTGGG+TGG 0.628614 1_3:+24589168 None:intergenic
TATGGTGGGTATAAGAGCTG+CGG 0.631457 1_3:+24589588 None:intergenic
GACGTTGGGAATGGGAGGAG+CGG 0.632408 1_3:+24598370 None:intergenic
ACCTGTCAACGGTGTCTCTG+GGG 0.632413 1_3:-24598229 Msa0111110:intron
ACAAGAATTTAACTTGCCTG+AGG 0.632804 1_3:+24595384 None:intergenic
CTTACAGCAAGTATACATCA+AGG 0.633014 1_3:-24593953 Msa0111110:CDS
CGTAAAGCACTCCTTAGCCG+AGG 0.633199 1_3:+24590763 None:intergenic
GTTGTTGAGATGTTACAGAC+TGG 0.636049 1_3:+24590566 None:intergenic
AGAAGTTCTTGGATAATCTG+AGG 0.636314 1_3:+24589318 None:intergenic
TGATGATGCTGTATCCATTG+TGG 0.636769 1_3:+24598425 None:intergenic
GAGTGCGGATCATATTCCCC+GGG 0.640776 1_3:+24593031 None:intergenic
GATGAAGAAAGACCTGCCAC+AGG 0.643598 1_3:-24595117 Msa0111110:intron
CTATAATGATTAATGAACAA+GGG 0.644603 1_3:+24589091 None:intergenic
CTAGCTGGATCATACACCAA+TGG 0.649269 1_3:+24597428 None:intergenic
GAGTAAACAGCATTCCACAA+TGG 0.649557 1_3:-24598439 Msa0111110:exon
TCTTGACGGATGAATCCCCT+CGG 0.651670 1_3:-24590780 Msa0111110:CDS
AGCTGTAATAAAATTCTCGA+AGG 0.654599 1_3:+24590678 None:intergenic
CAGCAAGTATACATCAAGGA+GGG 0.655370 1_3:-24593949 Msa0111110:CDS
ATTATAAGGGCAAAGTATGG+GGG 0.655388 1_3:+24591502 None:intergenic
GGGCCGCCTGAAGGAAAATG+GGG 0.673218 1_3:-24595505 Msa0111110:CDS
AAGAAGAAAACAGAACAGAG+AGG 0.677958 1_3:-24598463 Msa0111110:five_prime_UTR
GGAGTAAAGGATCGATTCCG+CGG 0.682638 1_3:+24598391 None:intergenic
ACAGCAAGTATACATCAAGG+AGG 0.696808 1_3:-24593950 Msa0111110:CDS
GTGTGGTGCGAAGTGTGACA+AGG 0.700349 1_3:+24598572 None:intergenic
CGGAGATACGGTAAGAACGG+CGG 0.702435 1_3:+24598325 None:intergenic
TAAAGCACTCCTTAGCCGAG+GGG 0.715422 1_3:+24590765 None:intergenic
TCATCACAACTCATCTACCG+CGG 0.718824 1_3:-24598408 Msa0111110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATAATTATTATAA+TGG + chr1_3:24593567-24593586 None:intergenic 0.0%
!!! AATATTTATTCAATGAATTT+TGG + chr1_3:24589953-24589972 None:intergenic 10.0%
!! AAAAAAAATAGAAATATCAT+AGG + chr1_3:24590004-24590023 None:intergenic 10.0%
!! ATAAATATTTAGATATTAGT+CGG - chr1_3:24590766-24590785 Msa0111110:CDS 10.0%
!! CAAACTAATAAATATAATTA+AGG - chr1_3:24593148-24593167 Msa0111110:intron 10.0%
!!! TGGTTTATTTTTAATTTTTT+TGG - chr1_3:24593266-24593285 Msa0111110:intron 10.0%
!!! TTTTTTTTTTTTTTTAGTGT+AGG - chr1_3:24594431-24594450 Msa0111110:intron 10.0%
!!! TTTTTTTTTTTTTTAGTGTA+GGG - chr1_3:24594432-24594451 Msa0111110:intron 10.0%
!!! GATTTTTTATTTATGAAAAT+AGG - chr1_3:24595223-24595242 Msa0111110:CDS 10.0%
!!! ATCCATATTTTTTAATTTTA+CGG + chr1_3:24595400-24595419 None:intergenic 10.0%
!! AAAAAATTATAACTATGATA+TGG + chr1_3:24595600-24595619 None:intergenic 10.0%
!! ATAAGTTTCAATTATCTAAA+AGG + chr1_3:24591149-24591168 None:intergenic 15.0%
!! AAGAAAGTAATATATCAAAA+TGG + chr1_3:24591971-24591990 None:intergenic 15.0%
!!! TATTAGTTTGTTTCTAAAAT+AGG + chr1_3:24593138-24593157 None:intergenic 15.0%
!! ACTAATAAATATAATTAAGG+AGG - chr1_3:24593151-24593170 Msa0111110:intron 15.0%
!!! AATAATAAATTACCTGTTTT+AGG + chr1_3:24593768-24593787 None:intergenic 15.0%
!!! AAAATAATTTTGACAAATTC+AGG - chr1_3:24594364-24594383 Msa0111110:intron 15.0%
!!! AAATAATTTTGACAAATTCA+GGG - chr1_3:24594365-24594384 Msa0111110:intron 15.0%
!! GTTTATAAAGAATTTACTTA+AGG + chr1_3:24594476-24594495 None:intergenic 15.0%
!! ATATTTATGAAATGTAATCT+TGG - chr1_3:24595091-24595110 Msa0111110:intron 15.0%
!! TACCGTAAAATTAAAAAATA+TGG - chr1_3:24595395-24595414 Msa0111110:intron 15.0%
!! TATACATTGTAAAACAAAAT+TGG - chr1_3:24595452-24595471 Msa0111110:CDS 15.0%
!! AAAATGAAGTTAAAAGAAAA+CGG + chr1_3:24595555-24595574 None:intergenic 15.0%
!!! AAATGGTTACTATTAAATTT+TGG - chr1_3:24596572-24596591 Msa0111110:intron 15.0%
!! AGTATAATAACTAAATTACT+TGG + chr1_3:24597200-24597219 None:intergenic 15.0%
!! TAGTATAAAAATATGATTGT+AGG + chr1_3:24597339-24597358 None:intergenic 15.0%
!! ATGGAAATGTCATATATTTA+TGG + chr1_3:24590028-24590047 None:intergenic 20.0%
!!! GATAAATTTGTTTTGATTTG+AGG - chr1_3:24590646-24590665 Msa0111110:CDS 20.0%
!!! TTTTTAATTTCCTGCATATT+TGG - chr1_3:24590831-24590850 Msa0111110:intron 20.0%
!! CGATATAGATTCATTTAAAA+AGG + chr1_3:24591428-24591447 None:intergenic 20.0%
!!! AAGTTATTAACTTTTTTCTC+TGG + chr1_3:24591474-24591493 None:intergenic 20.0%
!! GTTAATAACTTGATATTAGT+TGG - chr1_3:24591483-24591502 Msa0111110:CDS 20.0%
!!! TGCTTTTTACCTAATTTTTT+AGG - chr1_3:24592357-24592376 Msa0111110:intron 20.0%
!!! CATAAGAAATAAGAAAGTAT+TGG + chr1_3:24592514-24592533 None:intergenic 20.0%
!!! AAGGTTAAGTTTTTCATAAT+AGG - chr1_3:24592912-24592931 Msa0111110:intron 20.0%
!! ATTATAAAAATTGTCATGAG+AGG - chr1_3:24593575-24593594 Msa0111110:intron 20.0%
!!! TACATAAATTTTTGAAACAC+AGG + chr1_3:24593956-24593975 None:intergenic 20.0%
!! TGTGTTTCAAAAATTTATGT+AGG - chr1_3:24593955-24593974 Msa0111110:CDS 20.0%
!! AATACTAATGATTATACAAC+AGG + chr1_3:24593995-24594014 None:intergenic 20.0%
!! ATAATCTATCTAAATTACCA+GGG + chr1_3:24594125-24594144 None:intergenic 20.0%
!! TATAATCTATCTAAATTACC+AGG + chr1_3:24594126-24594145 None:intergenic 20.0%
!! AAATGTCTCTAAATAAGTAA+TGG + chr1_3:24594156-24594175 None:intergenic 20.0%
!!! AATTTCATAATGTCTTATTG+AGG + chr1_3:24594724-24594743 None:intergenic 20.0%
!!! TTCTGGTATTTAAAATCTAA+TGG + chr1_3:24595011-24595030 None:intergenic 20.0%
!!! AATTTCTTTTTTACTTGCAA+AGG + chr1_3:24595200-24595219 None:intergenic 20.0%
!!! TTAATTTTACGGTAAATATC+TGG + chr1_3:24595389-24595408 None:intergenic 20.0%
!! TAAAAGAACTTAAACATTAG+TGG + chr1_3:24595762-24595781 None:intergenic 20.0%
!! CATCATTTATCATAATGATT+AGG + chr1_3:24595794-24595813 None:intergenic 20.0%
!! CTAATCATTATGATAAATGA+TGG - chr1_3:24595792-24595811 Msa0111110:intron 20.0%
!! TTCATCAATTTCAAAAACAT+TGG + chr1_3:24596346-24596365 None:intergenic 20.0%
!!! TGATGTAGATATAACAATTT+TGG - chr1_3:24596533-24596552 Msa0111110:intron 20.0%
!!! AATTTTCCGATAAAGAATTT+TGG + chr1_3:24596634-24596653 None:intergenic 20.0%
!!! TTTTATACTAATTACAACAG+AGG - chr1_3:24597349-24597368 Msa0111110:CDS 20.0%
!! CTAAAATTGAATAAATCAGT+TGG - chr1_3:24597595-24597614 Msa0111110:intron 20.0%
!!! TGATTTATTTTAGCTTAACA+AGG - chr1_3:24598205-24598224 Msa0111110:intron 20.0%
!! TTATTTATCTATTTGTCTGT+GGG - chr1_3:24598238-24598257 Msa0111110:CDS 20.0%
!! TATTTATATATACTGGTATG+TGG + chr1_3:24598473-24598492 None:intergenic 20.0%
!! CTATAATGATTAATGAACAA+GGG + chr1_3:24598512-24598531 None:intergenic 20.0%
! TTTATTTGCATTCAGAGAAT+TGG - chr1_3:24589461-24589480 Msa0111110:intron 25.0%
!!! TAAGTTTTGTGAGTTTGTTT+GGG + chr1_3:24589895-24589914 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGTTTGTT+TGG + chr1_3:24589896-24589915 None:intergenic 25.0%
!! TTCAATGAATTTTGGATTGA+GGG + chr1_3:24589945-24589964 None:intergenic 25.0%
!! ATTCAATGAATTTTGGATTG+AGG + chr1_3:24589946-24589965 None:intergenic 25.0%
! GTATATTCAAGCATCATAAA+TGG + chr1_3:24590047-24590066 None:intergenic 25.0%
!!! GGATTTTATGTTATTTGATG+TGG - chr1_3:24590101-24590120 Msa0111110:intron 25.0%
!!! GTGTATTTTTTCAATTGTGT+AGG - chr1_3:24590126-24590145 Msa0111110:intron 25.0%
! TCTTGTCGATAACTAATATT+AGG - chr1_3:24590421-24590440 Msa0111110:intron 25.0%
! AAACTAAAGATAGTTTCTGA+CGG + chr1_3:24590504-24590523 None:intergenic 25.0%
!! AGAAACTATCTTTAGTTTCT+AGG - chr1_3:24590506-24590525 Msa0111110:CDS 25.0%
!! TTCTTTTGTCTATGACTTAA+AGG + chr1_3:24590610-24590629 None:intergenic 25.0%
!! TTATAATTTGCCAAATATGC+AGG + chr1_3:24590844-24590863 None:intergenic 25.0%
! TATCTAAAAGGATTGATACA+GGG + chr1_3:24591137-24591156 None:intergenic 25.0%
! TTATCTAAAAGGATTGATAC+AGG + chr1_3:24591138-24591157 None:intergenic 25.0%
!! ATATTTTCATAACCAGAATG+AGG - chr1_3:24591205-24591224 Msa0111110:intron 25.0%
! TTCATTTAAAAAGGACACAA+TGG + chr1_3:24591419-24591438 None:intergenic 25.0%
! AATCTATATCGTCATACATA+GGG - chr1_3:24591437-24591456 Msa0111110:CDS 25.0%
!!! GTTTCATTATTCTGAAATGA+AGG + chr1_3:24591565-24591584 None:intergenic 25.0%
! AATAATGAAACACAATTGTC+TGG - chr1_3:24591574-24591593 Msa0111110:CDS 25.0%
! AGTAATATATCAAAATGGTC+TGG + chr1_3:24591966-24591985 None:intergenic 25.0%
!! TTTTGAATTAACTAACCAAC+AGG - chr1_3:24592022-24592041 Msa0111110:intron 25.0%
!!! CCATTGATTTATTCATTATC+CGG - chr1_3:24592166-24592185 Msa0111110:intron 25.0%
! AAATTAGGTAAAAAGCAGTT+GGG + chr1_3:24592354-24592373 None:intergenic 25.0%
! AAAATTAGGTAAAAAGCAGT+TGG + chr1_3:24592355-24592374 None:intergenic 25.0%
! AACGATAAAATACTCTATCA+AGG - chr1_3:24592644-24592663 Msa0111110:intron 25.0%
! TTATAACTTCGAATACATAG+AGG + chr1_3:24592712-24592731 None:intergenic 25.0%
! GATGAAAGAATAAAGAAACA+AGG - chr1_3:24592893-24592912 Msa0111110:intron 25.0%
! GTTATCCTTTGTATATATAG+AGG - chr1_3:24593041-24593060 Msa0111110:CDS 25.0%
! TGTAACCTCTATATATACAA+AGG + chr1_3:24593049-24593068 None:intergenic 25.0%
!! TTTGTTGTAATTACTTGTAC+AGG + chr1_3:24593073-24593092 None:intergenic 25.0%
! AAAGAGAAGATATATAGAGT+GGG + chr1_3:24593452-24593471 None:intergenic 25.0%
! TAAAGAGAAGATATATAGAG+TGG + chr1_3:24593453-24593472 None:intergenic 25.0%
! ATATGTATTGTGTAGAGAAA+CGG + chr1_3:24593496-24593515 None:intergenic 25.0%
! AGATGATTAACATTAAACCA+TGG + chr1_3:24593532-24593551 None:intergenic 25.0%
!!! ATTATTTTAATGCTTTCAGC+TGG - chr1_3:24593782-24593801 Msa0111110:intron 25.0%
! ATTTCAATTTATACAGCGTA+GGG - chr1_3:24593861-24593880 Msa0111110:CDS 25.0%
! AAAAGTTAACAATCCATTGT+CGG + chr1_3:24594047-24594066 None:intergenic 25.0%
! CAAGAAATATTATCTACTTC+AGG + chr1_3:24594813-24594832 None:intergenic 25.0%
! CTGAAGTAGATAATATTTCT+TGG - chr1_3:24594811-24594830 Msa0111110:intron 25.0%
!!! GAATGTTTTAATGTTTGAAC+TGG - chr1_3:24595039-24595058 Msa0111110:intron 25.0%
! TTCTTATTCTTCATAAAGCA+TGG - chr1_3:24595144-24595163 Msa0111110:CDS 25.0%
! TCTTATTCTTCATAAAGCAT+GGG - chr1_3:24595145-24595164 Msa0111110:CDS 25.0%
!! AAAACAAAATTGGTTTCAGT+AGG - chr1_3:24595462-24595481 Msa0111110:CDS 25.0%
!! TTTTAAATGAACCACAAATC+AGG + chr1_3:24595504-24595523 None:intergenic 25.0%
!!! ATTTTTTCTTTGCTTTTGCA+TGG - chr1_3:24595613-24595632 Msa0111110:intron 25.0%
! ACACTTGTCTTAATGTTTAA+AGG + chr1_3:24595652-24595671 None:intergenic 25.0%
!!! TGTTTTGTTATTTGCAATTG+TGG - chr1_3:24595671-24595690 Msa0111110:CDS 25.0%
! TATCATAATGATTAGGATAG+TGG + chr1_3:24595787-24595806 None:intergenic 25.0%
!! TTACCTTTGATTATCCTTTT+AGG - chr1_3:24596072-24596091 Msa0111110:intron 25.0%
! TATCCTAAAAGGATAATCAA+AGG + chr1_3:24596078-24596097 None:intergenic 25.0%
! TAATTATAAGGGCAAAGTAT+GGG + chr1_3:24596103-24596122 None:intergenic 25.0%
! ATACTTTGCCCTTATAATTA+GGG - chr1_3:24596103-24596122 Msa0111110:intron 25.0%
! AATTATACCTGTGCAATATA+TGG + chr1_3:24596197-24596216 None:intergenic 25.0%
!! GATATCTATGTTTTACTTGA+AGG - chr1_3:24596308-24596327 Msa0111110:CDS 25.0%
! TACAGAAAAAATTAAGCCAA+TGG - chr1_3:24596429-24596448 Msa0111110:intron 25.0%
! ACAGAAAAAATTAAGCCAAT+GGG - chr1_3:24596430-24596449 Msa0111110:intron 25.0%
!! TAGATATAACAATTTTGGAC+AGG - chr1_3:24596538-24596557 Msa0111110:intron 25.0%
!!! TAGTCTTAGACTTAGTTTTA+TGG - chr1_3:24596602-24596621 Msa0111110:intron 25.0%
! AGTACACCAAAATTCTTTAT+CGG - chr1_3:24596625-24596644 Msa0111110:intron 25.0%
! TTCACAACTAATATTCATGA+CGG - chr1_3:24596654-24596673 Msa0111110:intron 25.0%
! CTTTACGTTACACTATATAT+GGG - chr1_3:24596853-24596872 Msa0111110:intron 25.0%
!!! TTTTTTCCGAGAATTTCTTT+TGG - chr1_3:24597112-24597131 Msa0111110:intron 25.0%
! CAATAAAGTAAAAGAAGTCA+AGG + chr1_3:24597256-24597275 None:intergenic 25.0%
!! ATTGTCGAAGTTTTCAAATT+TGG - chr1_3:24597313-24597332 Msa0111110:CDS 25.0%
!! GTTGGTAAAATTAACTGAAA+AGG - chr1_3:24597613-24597632 Msa0111110:intron 25.0%
!! TAACTGAAAAGGTTTGTTTA+TGG - chr1_3:24597624-24597643 Msa0111110:intron 25.0%
! CTTATTTATCTATTTGTCTG+TGG - chr1_3:24598237-24598256 Msa0111110:CDS 25.0%
! TGTCAAATATACACAATTGT+GGG + chr1_3:24598438-24598457 None:intergenic 25.0%
! ATTGTGTATATTTGACAGAA+TGG - chr1_3:24598441-24598460 Msa0111110:exon 25.0%
! ATTAATGAACAAGGGTAAAA+TGG + chr1_3:24598504-24598523 None:intergenic 25.0%
! GCTATAATGATTAATGAACA+AGG + chr1_3:24598513-24598532 None:intergenic 25.0%
AATGGAAGAAGATGAACAAT+TGG - chr1_3:24589520-24589539 Msa0111110:CDS 30.0%
!! AATATACATAAGCATTGAGC+TGG - chr1_3:24590060-24590079 Msa0111110:intron 30.0%
AAGTAGTGAATTTCTACCAT+TGG - chr1_3:24590156-24590175 Msa0111110:intron 30.0%
AGCTAGTATTACTGCATATT+GGG - chr1_3:24590189-24590208 Msa0111110:intron 30.0%
!! ATATTAGGCGTGTTGATTTA+AGG - chr1_3:24590436-24590455 Msa0111110:intron 30.0%
AACTAAAGATAGTTTCTGAC+GGG + chr1_3:24590503-24590522 None:intergenic 30.0%
! ATTTGAGGTGAATGATAGAT+CGG - chr1_3:24590661-24590680 Msa0111110:CDS 30.0%
ATATCACAAATAAGCAACCA+CGG + chr1_3:24591189-24591208 None:intergenic 30.0%
ACACAATGGCATATATAGAA+GGG + chr1_3:24591405-24591424 None:intergenic 30.0%
GAATCTATATCGTCATACAT+AGG - chr1_3:24591436-24591455 Msa0111110:CDS 30.0%
GACAACAATTCTTGTAAGAA+GGG + chr1_3:24591693-24591712 None:intergenic 30.0%
AGACAACAATTCTTGTAAGA+AGG + chr1_3:24591694-24591713 None:intergenic 30.0%
! AGAATTGTTGTCTGATGTTT+TGG - chr1_3:24591701-24591720 Msa0111110:CDS 30.0%
!!! TCTGAGGTTTTTTTTGTTCT+TGG - chr1_3:24591793-24591812 Msa0111110:intron 30.0%
!!! AGGTTTTTTTTGTTCTTGGT+GGG - chr1_3:24591797-24591816 Msa0111110:intron 30.0%
CCGGATAATGAATAAATCAA+TGG + chr1_3:24592169-24592188 None:intergenic 30.0%
CAATGGAGACCTAAAAAATT+AGG + chr1_3:24592369-24592388 None:intergenic 30.0%
TATGTGAATGAAGGTGAAAA+TGG - chr1_3:24592442-24592461 Msa0111110:intron 30.0%
TCTTTATCTTCCTAGGTATT+CGG + chr1_3:24592625-24592644 None:intergenic 30.0%
TTATCGTTCTTTATCTTCCT+AGG + chr1_3:24592632-24592651 None:intergenic 30.0%
TCTTCACACAACACATTAAT+CGG - chr1_3:24592683-24592702 Msa0111110:intron 30.0%
CAGTTAATTAGTTAGGACTT+AGG + chr1_3:24592738-24592757 None:intergenic 30.0%
GTTAGAGCAGTTAATTAGTT+AGG + chr1_3:24592745-24592764 None:intergenic 30.0%
! GATCATATTGCCTTTTATGA+GGG - chr1_3:24592934-24592953 Msa0111110:intron 30.0%
ATGATGAGACTAAGAACATT+AGG - chr1_3:24593197-24593216 Msa0111110:intron 30.0%
!! AATTTGTTGCAACTGATTGA+TGG - chr1_3:24593246-24593265 Msa0111110:intron 30.0%
CTAGTGAATGATTGTATGTA+TGG - chr1_3:24593312-24593331 Msa0111110:intron 30.0%
GAATTTGTAAAGAAACAGCA+TGG + chr1_3:24593430-24593449 None:intergenic 30.0%
TTAAACCATGGTAGTCAAAT+CGG + chr1_3:24593520-24593539 None:intergenic 30.0%
TCTTATCACAGTTCAATTTC+AGG - chr1_3:24593609-24593628 Msa0111110:intron 30.0%
CATTTCAATTTATACAGCGT+AGG - chr1_3:24593860-24593879 Msa0111110:CDS 30.0%
!!! AAAAGTGTTTTTACCGACAA+TGG - chr1_3:24594031-24594050 Msa0111110:intron 30.0%
!!! GACAATGGATTGTTAACTTT+TGG - chr1_3:24594046-24594065 Msa0111110:intron 30.0%
ATTAAAGATGTCAAGGATAG+TGG + chr1_3:24594093-24594112 None:intergenic 30.0%
GTGAAACATTAAAGATGTCA+AGG + chr1_3:24594100-24594119 None:intergenic 30.0%
TGATATTGTTTAGACTGGAA+AGG - chr1_3:24594242-24594261 Msa0111110:intron 30.0%
!!! TACAATTGTTTTGGGTTCAA+TGG - chr1_3:24594394-24594413 Msa0111110:intron 30.0%
!!! ACAATTGTTTTGGGTTCAAT+GGG - chr1_3:24594395-24594414 Msa0111110:intron 30.0%
AAACTTGCAATACTTGACTT+TGG - chr1_3:24594600-24594619 Msa0111110:intron 30.0%
AAAACATTCATTGCAAGTTC+TGG + chr1_3:24595028-24595047 None:intergenic 30.0%
CTTGGAAGATTCTTTGTATA+TGG - chr1_3:24595109-24595128 Msa0111110:intron 30.0%
TTTGTATATGGTATAAGCGT+AGG - chr1_3:24595121-24595140 Msa0111110:CDS 30.0%
! AAATTGGTTTCAGTAGGAAA+TGG - chr1_3:24595468-24595487 Msa0111110:CDS 30.0%
! GTGAAATTTAACCTGATTTG+TGG - chr1_3:24595490-24595509 Msa0111110:CDS 30.0%
!!! AACTTCATTTTTTCTCCTTC+AGG - chr1_3:24595564-24595583 Msa0111110:intron 30.0%
TTTAACGAAGTCTTTCACTA+TGG + chr1_3:24595919-24595938 None:intergenic 30.0%
AATTATAAGGGCAAAGTATG+GGG + chr1_3:24596102-24596121 None:intergenic 30.0%
CTAATTATAAGGGCAAAGTA+TGG + chr1_3:24596104-24596123 None:intergenic 30.0%
CATACTTTGCCCTTATAATT+AGG - chr1_3:24596102-24596121 Msa0111110:intron 30.0%
!!! AGACAGAAATTTTTTCCCAT+TGG + chr1_3:24596448-24596467 None:intergenic 30.0%
AAAAATTTCTGTCTAGTGTC+TGG - chr1_3:24596454-24596473 Msa0111110:intron 30.0%
TCTAGTGTCTGGAAATAAAA+GGG - chr1_3:24596465-24596484 Msa0111110:intron 30.0%
!!! ATATTCATGACGGATTTTGA+TGG - chr1_3:24596664-24596683 Msa0111110:intron 30.0%
GCTTTACGTTACACTATATA+TGG - chr1_3:24596852-24596871 Msa0111110:intron 30.0%
TACACTATATATGGGAAATC+TGG - chr1_3:24596861-24596880 Msa0111110:intron 30.0%
AGCTGTAATAAAATTCTCGA+AGG + chr1_3:24596925-24596944 None:intergenic 30.0%
GGAGTTATTGTACTTTCATA+TGG + chr1_3:24597227-24597246 None:intergenic 30.0%
AGTTAAATCTGAACAAGGTA+TGG - chr1_3:24597452-24597471 Msa0111110:CDS 30.0%
! TTTTGTCGTAAAATTCCACA+TGG - chr1_3:24597558-24597577 Msa0111110:intron 30.0%
ATGACTCCAAAAACAGTTTA+TGG + chr1_3:24597710-24597729 None:intergenic 30.0%
GTAAGAATTATGTCCTTACT+AGG - chr1_3:24597933-24597952 Msa0111110:intron 30.0%
AACTTTATCCTCTTCAGTTA+TGG + chr1_3:24598033-24598052 None:intergenic 30.0%
TTCTTAGCAGATTATCTTCT+CGG - chr1_3:24598346-24598365 Msa0111110:CDS 30.0%
CTGTCAAATATACACAATTG+TGG + chr1_3:24598439-24598458 None:intergenic 30.0%
ATAAGCCAAATCAATTATGC+TGG - chr1_3:24598575-24598594 Msa0111110:five_prime_UTR 30.0%
AATAGCCAGCATAATTGATT+TGG + chr1_3:24598583-24598602 None:intergenic 30.0%
AAGAAGAAAACAGAACAGAG+AGG - chr1_3:24589137-24589156 Msa0111110:three_prime_UTR 35.0%
CACGTTGAAATCAGTGAATT+CGG + chr1_3:24589437-24589456 None:intergenic 35.0%
TAATGATTCACTCTTTGCTG+AGG - chr1_3:24589577-24589596 Msa0111110:CDS 35.0%
!!! TGGTGAGCTACTTTTTTTCT+TGG - chr1_3:24590080-24590099 Msa0111110:intron 35.0%
CAATATGCAGTAATACTAGC+TGG + chr1_3:24590190-24590209 None:intergenic 35.0%
CAGCTAGTATTACTGCATAT+TGG - chr1_3:24590188-24590207 Msa0111110:intron 35.0%
GCTAGTATTACTGCATATTG+GGG - chr1_3:24590190-24590209 Msa0111110:intron 35.0%
GGTTAACAAGAAGGTTAAAG+AGG - chr1_3:24590297-24590316 Msa0111110:intron 35.0%
AGAGAAGAAACAGAAAGCAA+GGG + chr1_3:24590404-24590423 None:intergenic 35.0%
AAGAGAAGAAACAGAAAGCA+AGG + chr1_3:24590405-24590424 None:intergenic 35.0%
! TTTGAGGTGAATGATAGATC+GGG - chr1_3:24590662-24590681 Msa0111110:CDS 35.0%
TAGAAGTTTCCAGTTACGTA+TGG - chr1_3:24590713-24590732 Msa0111110:CDS 35.0%
TGTTATCATGTGTGTTGCAT+GGG + chr1_3:24590796-24590815 None:intergenic 35.0%
ATGTTATCATGTGTGTTGCA+TGG + chr1_3:24590797-24590816 None:intergenic 35.0%
TTTGCACAACAACATTGTGT+TGG - chr1_3:24590938-24590957 Msa0111110:intron 35.0%
GTTTACAAAACCAGCTTGTA+AGG + chr1_3:24591093-24591112 None:intergenic 35.0%
TTGTGCTATATATTTCACCG+TGG - chr1_3:24591169-24591188 Msa0111110:intron 35.0%
ACGTGAAATTGTGACATCTT+TGG - chr1_3:24591247-24591266 Msa0111110:intron 35.0%
CGTGAAATTGTGACATCTTT+GGG - chr1_3:24591248-24591267 Msa0111110:intron 35.0%
GTCCAGCATACATAAAACTT+GGG - chr1_3:24591270-24591289 Msa0111110:intron 35.0%
GACACAATGGCATATATAGA+AGG + chr1_3:24591406-24591425 None:intergenic 35.0%
!!! GAGGTTTTTTTTGTTCTTGG+TGG - chr1_3:24591796-24591815 Msa0111110:intron 35.0%
!!! GGTTTTTTTTGTTCTTGGTG+GGG - chr1_3:24591798-24591817 Msa0111110:intron 35.0%
!!! GTTTTTTTTGTTCTTGGTGG+GGG - chr1_3:24591799-24591818 Msa0111110:intron 35.0%
! GAAGGAACCTTCACATTTTA+TGG + chr1_3:24591837-24591856 None:intergenic 35.0%
! TCAGAATAGACATTTTGCCA+TGG + chr1_3:24591909-24591928 None:intergenic 35.0%
ACAAGAAAACAGATACCTGT+TGG + chr1_3:24592040-24592059 None:intergenic 35.0%
TTATTCATTATCCGGAACCT+TGG - chr1_3:24592174-24592193 Msa0111110:intron 35.0%
!! ACAAGAATTTAACTTGCCTG+AGG + chr1_3:24592219-24592238 None:intergenic 35.0%
GAGTTAGACTATGTGAATGA+AGG - chr1_3:24592433-24592452 Msa0111110:intron 35.0%
CAGGTCTTTCTTCATCATTT+CGG + chr1_3:24592479-24592498 None:intergenic 35.0%
TACTGACGTAAAACAGATAG+TGG + chr1_3:24592553-24592572 None:intergenic 35.0%
TTACACTAAGCAGAAGTTCT+TGG - chr1_3:24592574-24592593 Msa0111110:intron 35.0%
CTTTATCTTCCTAGGTATTC+GGG + chr1_3:24592624-24592643 None:intergenic 35.0%
AACTGCTCTAACAGTTTACA+TGG - chr1_3:24592753-24592772 Msa0111110:intron 35.0%
!! GATCGTCCATTTGATTTGTT+GGG - chr1_3:24592809-24592828 Msa0111110:intron 35.0%
GGAAAGAAAGTAACATCAGT+TGG + chr1_3:24592835-24592854 None:intergenic 35.0%
! GGATCATATTGCCTTTTATG+AGG - chr1_3:24592933-24592952 Msa0111110:intron 35.0%
AGATATGAAGCCCTCATAAA+AGG + chr1_3:24592947-24592966 None:intergenic 35.0%
CCTTGACACATATCATCAAT+AGG + chr1_3:24592999-24593018 None:intergenic 35.0%
! CCTATTGATGATATGTGTCA+AGG - chr1_3:24592996-24593015 Msa0111110:intron 35.0%
! TTGATGATATGTGTCAAGGT+TGG - chr1_3:24593000-24593019 Msa0111110:intron 35.0%
GTCTCATCATATTGTGAATC+AGG + chr1_3:24593187-24593206 None:intergenic 35.0%
TAGGCTAGACTTTCATTCAA+TGG - chr1_3:24593216-24593235 Msa0111110:intron 35.0%
TTTGTAAAGAAACAGCATGG+TGG + chr1_3:24593427-24593446 None:intergenic 35.0%
TAAACCATGGTAGTCAAATC+GGG + chr1_3:24593519-24593538 None:intergenic 35.0%
!! GTATACTTGCTGTAAGTTCT+TGG + chr1_3:24593643-24593662 None:intergenic 35.0%
CTTACAGCAAGTATACATCA+AGG - chr1_3:24593647-24593666 Msa0111110:intron 35.0%
!! CTTACAACAGAATGGATTGA+CGG - chr1_3:24593676-24593695 Msa0111110:intron 35.0%
GTCGGAGAATTAGTTAATGT+TGG - chr1_3:24593730-24593749 Msa0111110:intron 35.0%
AAGATGTAGCTTAAAGCTCA+CGG + chr1_3:24593827-24593846 None:intergenic 35.0%
TCTTTAATGTTTCACTTCCC+TGG - chr1_3:24594105-24594124 Msa0111110:intron 35.0%
CTCTAAATAAGTAATGGCAG+AGG + chr1_3:24594150-24594169 None:intergenic 35.0%
!! GAGATAATTGATAGCGTATG+TGG - chr1_3:24594218-24594237 Msa0111110:intron 35.0%
GTGGATGATATTGTTTAGAC+TGG - chr1_3:24594237-24594256 Msa0111110:intron 35.0%
TTGTTTAGACTGGAAAGGAT+TGG - chr1_3:24594247-24594266 Msa0111110:intron 35.0%
TATTTGGGTCCTCTAAATTC+AGG - chr1_3:24594311-24594330 Msa0111110:intron 35.0%
ATTTGGGTCCTCTAAATTCA+GGG - chr1_3:24594312-24594331 Msa0111110:intron 35.0%
! GGCTCGATTACAATTGTTTT+GGG - chr1_3:24594386-24594405 Msa0111110:intron 35.0%
TTATTTCAGCTGCTTGATAC+TGG - chr1_3:24594525-24594544 Msa0111110:intron 35.0%
! AGTATTGCAAGTTTTCCATC+AGG + chr1_3:24594594-24594613 None:intergenic 35.0%
TTGCAATACTTGACTTTGGT+AGG - chr1_3:24594604-24594623 Msa0111110:intron 35.0%
GCACACATTTGAATCAAACA+AGG + chr1_3:24594664-24594683 None:intergenic 35.0%
TTGATTCAAATGTGTGCATG+AGG - chr1_3:24594667-24594686 Msa0111110:intron 35.0%
TGATTCAAATGTGTGCATGA+GGG - chr1_3:24594668-24594687 Msa0111110:intron 35.0%
!! AAGACTTCGTGTGTTTTGTT+TGG - chr1_3:24594779-24594798 Msa0111110:intron 35.0%
TGTGGCTAGATATTGTTCAT+CGG - chr1_3:24595689-24595708 Msa0111110:CDS 35.0%
! ATGAAGTTGATCAAGACAAC+AGG + chr1_3:24595723-24595742 None:intergenic 35.0%
!!! TCAACTTCATTGCTTTTTCC+TGG - chr1_3:24595733-24595752 Msa0111110:CDS 35.0%
!! GAAATCTTTTGTTGTACCCA+GGG - chr1_3:24595814-24595833 Msa0111110:intron 35.0%
! TCAATTTTGTAACAAGCCCT+GGG + chr1_3:24595833-24595852 None:intergenic 35.0%
! CATTCCATACTTTTGATCGT+CGG + chr1_3:24595856-24595875 None:intergenic 35.0%
GTGAAAGACTTCGTTAAACT+TGG - chr1_3:24595921-24595940 Msa0111110:intron 35.0%
! GATCTAAATTGACTCCATCT+GGG + chr1_3:24595953-24595972 None:intergenic 35.0%
GGCAAAAAACATCAACTTTC+AGG - chr1_3:24596025-24596044 Msa0111110:intron 35.0%
ATTATAAGGGCAAAGTATGG+GGG + chr1_3:24596101-24596120 None:intergenic 35.0%
TCATCAACAATGGCAAAATC+AGG + chr1_3:24596167-24596186 None:intergenic 35.0%
TACCTGTGCAATATATGGAT+AGG + chr1_3:24596192-24596211 None:intergenic 35.0%
!! ACTGGCTTATAGCTTTAACT+TGG - chr1_3:24596270-24596289 Msa0111110:CDS 35.0%
GTCTAGTGTCTGGAAATAAA+AGG - chr1_3:24596464-24596483 Msa0111110:intron 35.0%
CTAGTGTCTGGAAATAAAAG+GGG - chr1_3:24596466-24596485 Msa0111110:intron 35.0%
TAGTGTCTGGAAATAAAAGG+GGG - chr1_3:24596467-24596486 Msa0111110:intron 35.0%
TTACTGATAGAGACTCTTGA+CGG - chr1_3:24596806-24596825 Msa0111110:intron 35.0%
TTTATTACAGCTGCCAAAAG+TGG - chr1_3:24596933-24596952 Msa0111110:intron 35.0%
ATCAGACAGCAAAAATGCTA+GGG + chr1_3:24597084-24597103 None:intergenic 35.0%
TATCAGACAGCAAAAATGCT+AGG + chr1_3:24597085-24597104 None:intergenic 35.0%
!! AGCATTTTTGCTGTCTGATA+AGG - chr1_3:24597085-24597104 Msa0111110:intron 35.0%
!! GCATTTTTGCTGTCTGATAA+GGG - chr1_3:24597086-24597105 Msa0111110:intron 35.0%
!! CATTTTTGCTGTCTGATAAG+GGG - chr1_3:24597087-24597106 Msa0111110:intron 35.0%
AGCGTAGTTAAATCTGAACA+AGG - chr1_3:24597447-24597466 Msa0111110:CDS 35.0%
GATTCAAGAAAAATTCGCCA+AGG - chr1_3:24597496-24597515 Msa0111110:intron 35.0%
! CAAGGTACAATGTTACTTCT+GGG - chr1_3:24597514-24597533 Msa0111110:intron 35.0%
AAACAAAACTTAAGCGCCAT+AGG + chr1_3:24597664-24597683 None:intergenic 35.0%
! TAGCCACCATAAACTGTTTT+TGG - chr1_3:24597701-24597720 Msa0111110:intron 35.0%
ACTCCAAAAACAGTTTATGG+TGG + chr1_3:24597707-24597726 None:intergenic 35.0%
AGTTCATTACTCGAAACTGA+TGG + chr1_3:24597780-24597799 None:intergenic 35.0%
TAGGTACCATACCGAAAATA+GGG + chr1_3:24597974-24597993 None:intergenic 35.0%
TTATCCTCTTCAGTTATGGT+GGG + chr1_3:24598029-24598048 None:intergenic 35.0%
TTTATCCTCTTCAGTTATGG+TGG + chr1_3:24598030-24598049 None:intergenic 35.0%
TTTATCTATTTGTCTGTGGG+TGG - chr1_3:24598241-24598260 Msa0111110:CDS 35.0%
AGAAGTTCTTGGATAATCTG+AGG + chr1_3:24598285-24598304 None:intergenic 35.0%
GATAATCTGCTAAGAACATC+AGG + chr1_3:24598342-24598361 None:intergenic 35.0%
TCTTAGCAGATTATCTTCTC+GGG - chr1_3:24598347-24598366 Msa0111110:CDS 35.0%
CAAATATACACAATTGTGGG+TGG + chr1_3:24598435-24598454 None:intergenic 35.0%
TGTGGAAGTTGTTGTATGTG+TGG + chr1_3:24589048-24589067 None:intergenic 40.0%
GTGGTTGTTGTAAAGAAGTG+TGG + chr1_3:24589066-24589085 None:intergenic 40.0%
GAGTAAACAGCATTCCACAA+TGG - chr1_3:24589161-24589180 Msa0111110:three_prime_UTR 40.0%
! TGATGATGCTGTATCCATTG+TGG + chr1_3:24589178-24589197 None:intergenic 40.0%
!! GAGAATTGGTGATGTTTCGA+AGG - chr1_3:24589475-24589494 Msa0111110:intron 40.0%
! CAATTGGCAAGTCTTATGAG+AGG - chr1_3:24589536-24589555 Msa0111110:CDS 40.0%
!! TGTTCAACTACGACTTGTTG+AGG - chr1_3:24589604-24589623 Msa0111110:CDS 40.0%
! ATTTTGGATTGAGGGTCTGT+TGG + chr1_3:24589937-24589956 None:intergenic 40.0%
GTGCAGTTATTATCTGTTGC+TGG - chr1_3:24590244-24590263 Msa0111110:intron 40.0%
CAGTTATTATCTGTTGCTGG+AGG - chr1_3:24590247-24590266 Msa0111110:intron 40.0%
! TTGCTGGAGGTTTTCTTTCT+CGG - chr1_3:24590260-24590279 Msa0111110:intron 40.0%
TAAGCTCATCCATACGTAAC+TGG + chr1_3:24590725-24590744 None:intergenic 40.0%
TGGAAATTCCACCCTAATTG+CGG - chr1_3:24590958-24590977 Msa0111110:intron 40.0%
TCTAGCACCTTCATTGTTCT+GGG - chr1_3:24591032-24591051 Msa0111110:intron 40.0%
ACTCAAACCCAGAACAATGA+AGG + chr1_3:24591042-24591061 None:intergenic 40.0%
! TTCATTGTTCTGGGTTTGAG+TGG - chr1_3:24591041-24591060 Msa0111110:intron 40.0%
! TCATTGTTCTGGGTTTGAGT+GGG - chr1_3:24591042-24591061 Msa0111110:intron 40.0%
TGAGTGGGGAATATAAAGCT+TGG - chr1_3:24591057-24591076 Msa0111110:intron 40.0%
GAGTGGGGAATATAAAGCTT+GGG - chr1_3:24591058-24591077 Msa0111110:intron 40.0%
TTCACGTATTTCAATAGCCC+TGG + chr1_3:24591234-24591253 None:intergenic 40.0%
GGTCCAGCATACATAAAACT+TGG - chr1_3:24591269-24591288 Msa0111110:intron 40.0%
!! TGCCCAAGTTTTATGTATGC+TGG + chr1_3:24591275-24591294 None:intergenic 40.0%
AGCATGCAATGAAAGGGTAA+AGG + chr1_3:24591382-24591401 None:intergenic 40.0%
!!! GTCACTGCAGAGAGTTTTTT+TGG + chr1_3:24591629-24591648 None:intergenic 40.0%
!!! GTAAGCTCGTACTTTTTCTG+AGG - chr1_3:24591777-24591796 Msa0111110:intron 40.0%
GGGGATTCCATAAAATGTGA+AGG - chr1_3:24591827-24591846 Msa0111110:intron 40.0%
TCCTTCATTTGCAGATGATG+TGG - chr1_3:24591851-24591870 Msa0111110:intron 40.0%
ATTTGCAGATGATGTGGCTA+TGG - chr1_3:24591857-24591876 Msa0111110:intron 40.0%
GCTCTAATTGAAGAGGAACT+TGG - chr1_3:24591879-24591898 Msa0111110:intron 40.0%
AAAATGGTCTGGAAAGCTAC+CGG + chr1_3:24591955-24591974 None:intergenic 40.0%
GAAACATATGCAGCATCTCT+CGG - chr1_3:24592060-24592079 Msa0111110:intron 40.0%
ATCTCTCGGACAGGTATATA+AGG - chr1_3:24592074-24592093 Msa0111110:intron 40.0%
TCTCTCGGACAGGTATATAA+GGG - chr1_3:24592075-24592094 Msa0111110:intron 40.0%
GTAACTGTCTCGAGAACAAA+AGG + chr1_3:24592147-24592166 None:intergenic 40.0%
! ATTTTCGAAGAGCCAAACCA+AGG + chr1_3:24592194-24592213 None:intergenic 40.0%
!!! TTTTTAGGTCTCCATTGACG+TGG - chr1_3:24592372-24592391 Msa0111110:intron 40.0%
!! GGATCGTCCATTTGATTTGT+TGG - chr1_3:24592808-24592827 Msa0111110:intron 40.0%
AGTTGGCCCAACAAATCAAA+TGG + chr1_3:24592818-24592837 None:intergenic 40.0%
GCACATGCAAACAGATCATT+GGG + chr1_3:24592977-24592996 None:intergenic 40.0%
! ATATCCCGATTTGACTACCA+TGG - chr1_3:24593512-24593531 Msa0111110:intron 40.0%
ACAGCAAGTATACATCAAGG+AGG - chr1_3:24593650-24593669 Msa0111110:intron 40.0%
CAGCAAGTATACATCAAGGA+GGG - chr1_3:24593651-24593670 Msa0111110:intron 40.0%
CAGAGCAAAGAAAGCAATGT+CGG - chr1_3:24593712-24593731 Msa0111110:intron 40.0%
AGTCATCTGCTACCTAAAAC+AGG - chr1_3:24593753-24593772 Msa0111110:intron 40.0%
AGATGTAGCTTAAAGCTCAC+GGG + chr1_3:24593826-24593845 None:intergenic 40.0%
!! AGGATAGTGGAACATTAGTG+AGG + chr1_3:24594080-24594099 None:intergenic 40.0%
TTAGACTGGAAAGGATTGGA+AGG - chr1_3:24594251-24594270 Msa0111110:intron 40.0%
AATCCAGTCCCTGAATTTAG+AGG + chr1_3:24594323-24594342 None:intergenic 40.0%
! GGGCTCGATTACAATTGTTT+TGG - chr1_3:24594385-24594404 Msa0111110:intron 40.0%
! CGAAGTCTTTTTCTACTTCG+TGG + chr1_3:24594768-24594787 None:intergenic 40.0%
TATGGCTGTCATATTCCTGA+AGG + chr1_3:24595582-24595601 None:intergenic 40.0%
!! TTGCTTTTGCATGGCGATTT+TGG - chr1_3:24595622-24595641 Msa0111110:intron 40.0%
CTTAAACATTAGTGGCATCC+AGG + chr1_3:24595754-24595773 None:intergenic 40.0%
!! GGAAATCTTTTGTTGTACCC+AGG - chr1_3:24595813-24595832 Msa0111110:intron 40.0%
! GTCAATTTTGTAACAAGCCC+TGG + chr1_3:24595834-24595853 None:intergenic 40.0%
TTGACCGACGATCAAAAGTA+TGG - chr1_3:24595849-24595868 Msa0111110:intron 40.0%
CAATTGCTCATCTCATCCAT+CGG - chr1_3:24595883-24595902 Msa0111110:intron 40.0%
AATTGCTCATCTCATCCATC+GGG - chr1_3:24595884-24595903 Msa0111110:intron 40.0%
AAACTTGGTTTCATCCCAGA+TGG - chr1_3:24595936-24595955 Msa0111110:intron 40.0%
! GGATCTAAATTGACTCCATC+TGG + chr1_3:24595954-24595973 None:intergenic 40.0%
AAACATCAACTTTCAGGAGC+TGG - chr1_3:24596031-24596050 Msa0111110:intron 40.0%
!! AAGTATGGGGGTATCCTAAA+AGG + chr1_3:24596089-24596108 None:intergenic 40.0%
GCCCTTATAATTAGGGCTAT+CGG - chr1_3:24596110-24596129 Msa0111110:intron 40.0%
CCCGATAGCCCTAATTATAA+GGG + chr1_3:24596114-24596133 None:intergenic 40.0%
CCCTTATAATTAGGGCTATC+GGG - chr1_3:24596111-24596130 Msa0111110:intron 40.0%
CCTTATAATTAGGGCTATCG+GGG - chr1_3:24596112-24596131 Msa0111110:intron 40.0%
!! TTGGAAGGGATAGCTTTAGT+AGG - chr1_3:24596137-24596156 Msa0111110:intron 40.0%
TGGATAGGCTTCATCAACAA+TGG + chr1_3:24596177-24596196 None:intergenic 40.0%
AGCCTATCCATATATTGCAC+AGG - chr1_3:24596187-24596206 Msa0111110:intron 40.0%
TGCACAGGTATAATTGTCTC+TGG - chr1_3:24596202-24596221 Msa0111110:intron 40.0%
CAGTTCTTGACAATGACAGA+GGG + chr1_3:24596254-24596273 None:intergenic 40.0%
CTTTCAAGCACTTCTTGTTC+AGG + chr1_3:24596369-24596388 None:intergenic 40.0%
GATGTAATTGGATGCCTTCA+AGG - chr1_3:24596495-24596514 Msa0111110:intron 40.0%
! ACAATTTTGGACAGGATGCA+CGG - chr1_3:24596546-24596565 Msa0111110:intron 40.0%
GCACAAGAAAATTTGCAGTG+TGG + chr1_3:24596735-24596754 None:intergenic 40.0%
AGCTTGGGCTTATTACTAAC+CGG - chr1_3:24596988-24597007 Msa0111110:intron 40.0%
GTTGTTGAGATGTTACAGAC+TGG + chr1_3:24597037-24597056 None:intergenic 40.0%
CCTCGTCCAAAAGAAATTCT+CGG + chr1_3:24597121-24597140 None:intergenic 40.0%
TAAAAGAAGTCAAGGACGAG+AGG + chr1_3:24597248-24597267 None:intergenic 40.0%
CCAGAAGTAACATTGTACCT+TGG + chr1_3:24597516-24597535 None:intergenic 40.0%
! CCAAGGTACAATGTTACTTC+TGG - chr1_3:24597513-24597532 Msa0111110:intron 40.0%
TGTCGTAAAATTCCACATGG+TGG - chr1_3:24597561-24597580 Msa0111110:intron 40.0%
!! TCTGCGCAAGTCTTGTTATA+TGG - chr1_3:24597836-24597855 Msa0111110:intron 40.0%
TGATTGACTGCAGATTGTCA+AGG - chr1_3:24597881-24597900 Msa0111110:intron 40.0%
GATTGACTGCAGATTGTCAA+GGG - chr1_3:24597882-24597901 Msa0111110:intron 40.0%
TGCATTCTGAACTCCTAGTA+AGG + chr1_3:24597949-24597968 None:intergenic 40.0%
! CAGAATGCAAGCCCTATTTT+CGG - chr1_3:24597960-24597979 Msa0111110:intron 40.0%
GTAGGTACCATACCGAAAAT+AGG + chr1_3:24597975-24597994 None:intergenic 40.0%
TATACCCACCATAACTGAAG+AGG - chr1_3:24598022-24598041 Msa0111110:intron 40.0%
!! TGTGGGTGGATTAAGCATTA+AGG + chr1_3:24598421-24598440 None:intergenic 40.0%
AGAGAGAGAGAAGGTTTGGA+GGG + chr1_3:24589090-24589109 None:intergenic 45.0%
AGAGAGAGAGAGAGAAGGTT+TGG + chr1_3:24589094-24589113 None:intergenic 45.0%
TCATCACAACTCATCTACCG+CGG - chr1_3:24589192-24589211 Msa0111110:three_prime_UTR 45.0%
GTTGTTGTGACGTTGGGAAT+GGG + chr1_3:24589241-24589260 None:intergenic 45.0%
CCTTGAAGAAGAACCGTTGA+CGG + chr1_3:24589337-24589356 None:intergenic 45.0%
! TAAGAGAGTGAGAGCGCAAA+TGG - chr1_3:24589502-24589521 Msa0111110:CDS 45.0%
! AGTCTTATGAGAGGTCTTCG+TGG - chr1_3:24589545-24589564 Msa0111110:CDS 45.0%
CTAGCTGGATCATACACCAA+TGG + chr1_3:24590175-24590194 None:intergenic 45.0%
! TGCTGGAGGTTTTCTTTCTC+GGG - chr1_3:24590261-24590280 Msa0111110:intron 45.0%
!! TTTTCTTTCTCGGGTTGCGT+GGG - chr1_3:24590270-24590289 Msa0111110:intron 45.0%
GTGGGATGTGGTTAACAAGA+AGG - chr1_3:24590288-24590307 Msa0111110:intron 45.0%
GCAAGCTGCTTAGTCTATCT+TGG + chr1_3:24590336-24590355 None:intergenic 45.0%
CTAAGGGTAGACCGCAATTA+GGG + chr1_3:24590972-24590991 None:intergenic 45.0%
ACCCTTAGGCGCCTTAATAT+CGG - chr1_3:24590984-24591003 Msa0111110:intron 45.0%
!! CAACCCAAGTGCCGATATTA+AGG + chr1_3:24590998-24591017 None:intergenic 45.0%
!! CAGAACAATGAAGGTGCTAG+AGG + chr1_3:24591033-24591052 None:intergenic 45.0%
CTCTAGCACCTTCATTGTTC+TGG - chr1_3:24591031-24591050 Msa0111110:intron 45.0%
! CATTGTTCTGGGTTTGAGTG+GGG - chr1_3:24591043-24591062 Msa0111110:intron 45.0%
ATAACCAGAATGAGGTTGCC+AGG - chr1_3:24591213-24591232 Msa0111110:intron 45.0%
TAACCAGAATGAGGTTGCCA+GGG - chr1_3:24591214-24591233 Msa0111110:intron 45.0%
! GAAGGGAGCATGCAATGAAA+GGG + chr1_3:24591388-24591407 None:intergenic 45.0%
! AGAAGGGAGCATGCAATGAA+AGG + chr1_3:24591389-24591408 None:intergenic 45.0%
GCCACATCATCTGCAAATGA+AGG + chr1_3:24591855-24591874 None:intergenic 45.0%
!! GGCTATGGCTCTAATTGAAG+AGG - chr1_3:24591872-24591891 Msa0111110:intron 45.0%
! TATCCCCATTTTCCTTCAGG+CGG + chr1_3:24592101-24592120 None:intergenic 45.0%
! CCATATCCCCATTTTCCTTC+AGG + chr1_3:24592104-24592123 None:intergenic 45.0%
CCTGAAGGAAAATGGGGATA+TGG - chr1_3:24592101-24592120 Msa0111110:intron 45.0%
CATTATCCGGAACCTTGGTT+TGG - chr1_3:24592179-24592198 Msa0111110:intron 45.0%
GGCTCTTCGAAAATTTCCTC+AGG - chr1_3:24592200-24592219 Msa0111110:intron 45.0%
!!! GTGGGCTGCTAGATTTTTTG+AGG - chr1_3:24592411-24592430 Msa0111110:intron 45.0%
TCTTCATCATTTCGGCGAAG+CGG + chr1_3:24592471-24592490 None:intergenic 45.0%
!! GAAAGTATTGGACTCACCTG+TGG + chr1_3:24592502-24592521 None:intergenic 45.0%
CACTAAGCAGAAGTTCTTGG+TGG - chr1_3:24592577-24592596 Msa0111110:intron 45.0%
CAGAAGTTCTTGGTGGAATC+TGG - chr1_3:24592584-24592603 Msa0111110:intron 45.0%
TTTGTTCCTCCCGAATACCT+AGG - chr1_3:24592612-24592631 Msa0111110:intron 45.0%
TATCTTCCTAGGTATTCGGG+AGG + chr1_3:24592621-24592640 None:intergenic 45.0%
CTATCAAGGACTCAAGAGCT+TGG - chr1_3:24592658-24592677 Msa0111110:intron 45.0%
TTTACATGGCCTGCTCTCAA+CGG - chr1_3:24592767-24592786 Msa0111110:intron 45.0%
ATGGACGATCCATGTAAGTC+AGG + chr1_3:24592799-24592818 None:intergenic 45.0%
TTAAAGTGTGCGTCACACAG+AGG + chr1_3:24592856-24592875 None:intergenic 45.0%
GGCACATGCAAACAGATCAT+TGG + chr1_3:24592978-24592997 None:intergenic 45.0%
AGAAACGGAGCATGGAGAAA+CGG + chr1_3:24593481-24593500 None:intergenic 45.0%
TTGTGTAGAGAAACGGAGCA+TGG + chr1_3:24593489-24593508 None:intergenic 45.0%
GGAGGGTTCTTACAACAGAA+TGG - chr1_3:24593668-24593687 Msa0111110:intron 45.0%
AATATGATCCGCACTCCTGA+TGG - chr1_3:24594576-24594595 Msa0111110:intron 45.0%
! CAAGTTTTCCATCAGGAGTG+CGG + chr1_3:24594587-24594606 None:intergenic 45.0%
ACGAAGTCTTTCACTATGGC+TGG + chr1_3:24595915-24595934 None:intergenic 45.0%
!! TTTGCAAGCACTGGCAAGAT+AGG + chr1_3:24595975-24595994 None:intergenic 45.0%
TATCTTGCCAGTGCTTGCAA+AGG - chr1_3:24595974-24595993 Msa0111110:intron 45.0%
TCAAAGACCTTTGCAAGCAC+TGG + chr1_3:24595984-24596003 None:intergenic 45.0%
!! GTCTTTGACCAGGCTTTAGA+AGG - chr1_3:24595996-24596015 Msa0111110:intron 45.0%
!! TTTGACCAGGCTTTAGAAGG+TGG - chr1_3:24595999-24596018 Msa0111110:intron 45.0%
CCCCGATAGCCCTAATTATA+AGG + chr1_3:24596115-24596134 None:intergenic 45.0%
! AATTAGGGCTATCGGGGTTT+TGG - chr1_3:24596118-24596137 Msa0111110:intron 45.0%
CCAGTTCTTGACAATGACAG+AGG + chr1_3:24596255-24596274 None:intergenic 45.0%
CCTCTGTCATTGTCAAGAAC+TGG - chr1_3:24596252-24596271 Msa0111110:intron 45.0%
AAGGGGGACATCGATGTAAT+TGG - chr1_3:24596483-24596502 Msa0111110:intron 45.0%
TGGATGCCTTCAAGGTTTAG+AGG - chr1_3:24596503-24596522 Msa0111110:intron 45.0%
ATGCCTTCAAGGTTTAGAGG+AGG - chr1_3:24596506-24596525 Msa0111110:intron 45.0%
TGCCTTCAAGGTTTAGAGGA+GGG - chr1_3:24596507-24596526 Msa0111110:intron 45.0%
ATCCCTCCTCTAAACCTTGA+AGG + chr1_3:24596512-24596531 None:intergenic 45.0%
! CAATTTTGGACAGGATGCAC+GGG - chr1_3:24596547-24596566 Msa0111110:intron 45.0%
ATTACAGCTGCCAAAAGTGG+AGG - chr1_3:24596936-24596955 Msa0111110:intron 45.0%
AGAGGATCTGAAAGGGAGTA+TGG - chr1_3:24596962-24596981 Msa0111110:intron 45.0%
GATGTTACAGACTGGAATCC+CGG + chr1_3:24597029-24597048 None:intergenic 45.0%
! CCGAGAATTTCTTTTGGACG+AGG - chr1_3:24597118-24597137 Msa0111110:intron 45.0%
GCAAAAGTAATGCCACCATG+TGG + chr1_3:24597576-24597595 None:intergenic 45.0%
TGCTGTGACAAGGGAACAAA+TGG - chr1_3:24597911-24597930 Msa0111110:intron 45.0%
! TGCAAGCCCTATTTTCGGTA+TGG - chr1_3:24597965-24597984 Msa0111110:intron 45.0%
TTCGGTATGGTACCTACCAT+TGG - chr1_3:24597978-24597997 Msa0111110:intron 45.0%
!! TATGGTGGGTATAAGAGCTG+CGG + chr1_3:24598015-24598034 None:intergenic 45.0%
! GAACAATGTCCAGAAAGTGC+TGG - chr1_3:24598058-24598077 Msa0111110:intron 45.0%
TCAAGAACTCCAGCACTTTC+TGG + chr1_3:24598070-24598089 None:intergenic 45.0%
TCTGTCAAGCACATCTAGTC+AGG - chr1_3:24598103-24598122 Msa0111110:intron 45.0%
TGAGGAACATTGAGAGCCTA+AGG + chr1_3:24598267-24598286 None:intergenic 45.0%
!! TATATGTTAATTTATTAATA+TGG - chr1_3:24592258-24592277 Msa0111110:intron 5.0%
!! ACAAATTATTTAAAAATTTA+GGG + chr1_3:24594292-24594311 None:intergenic 5.0%
!! TACAAATTATTTAAAAATTT+AGG + chr1_3:24594293-24594312 None:intergenic 5.0%
!!! ATTTTTAAATAATTTGTATT+TGG - chr1_3:24594295-24594314 Msa0111110:intron 5.0%
!!! TTTTTAAATAATTTGTATTT+GGG - chr1_3:24594296-24594315 Msa0111110:intron 5.0%
!! AAAATAAAAAAATTAATTCA+AGG + chr1_3:24594502-24594521 None:intergenic 5.0%
!! AAAAAAAAAAAAAAGATATA+CGG + chr1_3:24594918-24594937 None:intergenic 5.0%
!!! AAAATTATTTTAAATTTTCT+TGG - chr1_3:24595357-24595376 Msa0111110:intron 5.0%
!! TATATTATATTTATATATAC+TGG + chr1_3:24598480-24598499 None:intergenic 5.0%
GAGAGAGAGAGAAGGTTTGG+AGG + chr1_3:24589091-24589110 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+AGG + chr1_3:24589099-24589118 None:intergenic 50.0%
! GGAGTAAAGGATCGATTCCG+CGG + chr1_3:24589212-24589231 None:intergenic 50.0%
GGTTGTTGTGACGTTGGGAA+TGG + chr1_3:24589242-24589261 None:intergenic 50.0%
AGGGAGGTTGTTGTGACGTT+GGG + chr1_3:24589247-24589266 None:intergenic 50.0%
CAGCGGAGATACGGTAAGAA+CGG + chr1_3:24589281-24589300 None:intergenic 50.0%
! AACCGGAGCAGGTTTAGGAT+CGG + chr1_3:24589310-24589329 None:intergenic 50.0%
GTTGTAACCGGAGCAGGTTT+AGG + chr1_3:24589315-24589334 None:intergenic 50.0%
GAACCGTTGACGGTTGTAAC+CGG + chr1_3:24589327-24589346 None:intergenic 50.0%
CCGTCAACGGTTCTTCTTCA+AGG - chr1_3:24589334-24589353 Msa0111110:intron 50.0%
AGAGACACCGTTGACAGGTT+TGG + chr1_3:24589370-24589389 None:intergenic 50.0%
AAACCTGTCAACGGTGTCTC+TGG - chr1_3:24589369-24589388 Msa0111110:intron 50.0%
AACCTGTCAACGGTGTCTCT+GGG - chr1_3:24589370-24589389 Msa0111110:intron 50.0%
CTGCACAATGCGAGTTGCAA+CGG + chr1_3:24590230-24590249 None:intergenic 50.0%
!! GTTTTCTTTCTCGGGTTGCG+TGG - chr1_3:24590269-24590288 Msa0111110:intron 50.0%
CTTGACGTGGTGGTCATTGT+CGG - chr1_3:24590363-24590382 Msa0111110:intron 50.0%
! ATAGATCGGGTTGCGTACAC+AGG - chr1_3:24590675-24590694 Msa0111110:CDS 50.0%
CCTAAGGGTAGACCGCAATT+AGG + chr1_3:24590973-24590992 None:intergenic 50.0%
CCTAATTGCGGTCTACCCTT+AGG - chr1_3:24590970-24590989 Msa0111110:intron 50.0%
! GCCGATATTAAGGCGCCTAA+GGG + chr1_3:24590988-24591007 None:intergenic 50.0%
! TGCCGATATTAAGGCGCCTA+AGG + chr1_3:24590989-24591008 None:intergenic 50.0%
GCGCCTTAATATCGGCACTT+GGG - chr1_3:24590992-24591011 Msa0111110:intron 50.0%
GGTGCTAGAGGATGCAATGA+AGG + chr1_3:24591021-24591040 None:intergenic 50.0%
GCAGTTCTCACCTTACAAGC+TGG - chr1_3:24591080-24591099 Msa0111110:intron 50.0%
GCTGCAGGTGACAGTATATC+AGG + chr1_3:24591314-24591333 None:intergenic 50.0%
TGCAACTCTGTCATTGCTGC+AGG + chr1_3:24591329-24591348 None:intergenic 50.0%
! TTTTGTTCTTGGTGGGGGTG+TGG - chr1_3:24591804-24591823 Msa0111110:intron 50.0%
! TTTGTTCTTGGTGGGGGTGT+GGG - chr1_3:24591805-24591824 Msa0111110:intron 50.0%
AAGAGGAACTTGGTCAGCCA+TGG - chr1_3:24591889-24591908 Msa0111110:intron 50.0%
ATATGCAGCATCTCTCGGAC+AGG - chr1_3:24592065-24592084 Msa0111110:intron 50.0%
GAAGAGCCAAACCAAGGTTC+CGG + chr1_3:24592188-24592207 None:intergenic 50.0%
TAGGTCTCCATTGACGTGGT+TGG - chr1_3:24592376-24592395 Msa0111110:intron 50.0%
AGGTCTCCATTGACGTGGTT+GGG - chr1_3:24592377-24592396 Msa0111110:intron 50.0%
AACCAACCCAACCACGTCAA+TGG + chr1_3:24592386-24592405 None:intergenic 50.0%
GATGAAGAAAGACCTGCCAC+AGG - chr1_3:24592483-24592502 Msa0111110:intron 50.0%
CGGACAAGTCCTGACTTACA+TGG - chr1_3:24592787-24592806 Msa0111110:intron 50.0%
GGACGTGTGGGAAGTTGTAA+AGG + chr1_3:24593406-24593425 None:intergenic 50.0%
!! AAACAGCATGGTGGACGTGT+GGG + chr1_3:24593418-24593437 None:intergenic 50.0%
GGTCCTCTAAATTCAGGGAC+TGG - chr1_3:24594317-24594336 Msa0111110:intron 50.0%
! TTTTCATGCTGACCCTCACC+CGG - chr1_3:24594551-24594570 Msa0111110:intron 50.0%
CTATGGCTGGATAATCCCGA+TGG + chr1_3:24595902-24595921 None:intergenic 50.0%
GCTTGCAAAGGTCTTTGACC+AGG - chr1_3:24595986-24596005 Msa0111110:intron 50.0%
!! ACCAGGCTTTAGAAGGTGGA+GGG - chr1_3:24596003-24596022 Msa0111110:intron 50.0%
! TCTTGACGGATGAATCCCCT+CGG - chr1_3:24596820-24596839 Msa0111110:intron 50.0%
! TAAAGCACTCCTTAGCCGAG+GGG + chr1_3:24596838-24596857 None:intergenic 50.0%
! GTAAAGCACTCCTTAGCCGA+GGG + chr1_3:24596839-24596858 None:intergenic 50.0%
! ATCCTCTCCACCTCCACTTT+TGG + chr1_3:24596949-24596968 None:intergenic 50.0%
GAGGTGGAGAGGATCTGAAA+GGG - chr1_3:24596955-24596974 Msa0111110:intron 50.0%
! AAAGGGAGTATGGCTGAGCT+TGG - chr1_3:24596972-24596991 Msa0111110:intron 50.0%
! AAGGGAGTATGGCTGAGCTT+GGG - chr1_3:24596973-24596992 Msa0111110:intron 50.0%
CCGGCAAGAGATATTCTGAC+CGG + chr1_3:24597010-24597029 None:intergenic 50.0%
CCGGTCAGAATATCTCTTGC+CGG - chr1_3:24597007-24597026 Msa0111110:intron 50.0%
CGGTCAGAATATCTCTTGCC+GGG - chr1_3:24597008-24597027 Msa0111110:intron 50.0%
!! AGGGCATTGATGCTGTGACA+AGG - chr1_3:24597901-24597920 Msa0111110:intron 50.0%
!! GGGCATTGATGCTGTGACAA+GGG - chr1_3:24597902-24597921 Msa0111110:intron 50.0%
! GGCTTAAAGCGTCCAATGGT+AGG + chr1_3:24597993-24598012 None:intergenic 50.0%
!! ATGGTGGGTATAAGAGCTGC+GGG + chr1_3:24598014-24598033 None:intergenic 50.0%
ATTTGTCTGTGGGTGGCCTT+AGG - chr1_3:24598248-24598267 Msa0111110:CDS 50.0%
GCAACACTGGCAGAAGTTCT+TGG + chr1_3:24598296-24598315 None:intergenic 50.0%
AGAACTTCTGCCAGTGTTGC+CGG - chr1_3:24598296-24598315 Msa0111110:CDS 50.0%
AGCACTTTAGCAGAGATGCC+CGG + chr1_3:24598318-24598337 None:intergenic 50.0%
GTGTGGTGCGAAGTGTGACA+AGG + chr1_3:24589031-24589050 None:intergenic 55.0%
GAGAGAAGGTTTGGAGGGAG+TGG + chr1_3:24589085-24589104 None:intergenic 55.0%
GAATGGGAGGAGCGGAGTAA+AGG + chr1_3:24589225-24589244 None:intergenic 55.0%
GTTGTGACGTTGGGAATGGG+AGG + chr1_3:24589238-24589257 None:intergenic 55.0%
GAGGGAGGTTGTTGTGACGT+TGG + chr1_3:24589248-24589267 None:intergenic 55.0%
CGGAGATACGGTAAGAACGG+CGG + chr1_3:24589278-24589297 None:intergenic 55.0%
! TTTAGGATCGGTGGCGACAG+CGG + chr1_3:24589298-24589317 None:intergenic 55.0%
CACCGATCCTAAACCTGCTC+CGG - chr1_3:24589305-24589324 Msa0111110:CDS 55.0%
TTGACGGTTGTAACCGGAGC+AGG + chr1_3:24589321-24589340 None:intergenic 55.0%
GCTCCGGTTACAACCGTCAA+CGG - chr1_3:24589321-24589340 Msa0111110:CDS 55.0%
ACACCGTTGACAGGTTTGGC+AGG + chr1_3:24589366-24589385 None:intergenic 55.0%
ACCTGTCAACGGTGTCTCTG+GGG - chr1_3:24589371-24589390 Msa0111110:intron 55.0%
GCTTGCGTGCATTCTTGACG+TGG - chr1_3:24590350-24590369 Msa0111110:intron 55.0%
TGCGTGCATTCTTGACGTGG+TGG - chr1_3:24590353-24590372 Msa0111110:intron 55.0%
AGGGTAGACCGCAATTAGGG+TGG + chr1_3:24590969-24590988 None:intergenic 55.0%
GGCGCCTTAATATCGGCACT+TGG - chr1_3:24590991-24591010 Msa0111110:intron 55.0%
TAGCCCTGGCAACCTCATTC+TGG + chr1_3:24591220-24591239 None:intergenic 55.0%
! TTGTTCTTGGTGGGGGTGTG+GGG - chr1_3:24591806-24591825 Msa0111110:intron 55.0%
ATGGTCTGGAAAGCTACCGG+CGG + chr1_3:24591952-24591971 None:intergenic 55.0%
GGTATATAAGGGCCGCCTGA+AGG - chr1_3:24592086-24592105 Msa0111110:intron 55.0%
AAGGGCCGCCTGAAGGAAAA+TGG - chr1_3:24592093-24592112 Msa0111110:intron 55.0%
AGGGCCGCCTGAAGGAAAAT+GGG - chr1_3:24592094-24592113 Msa0111110:intron 55.0%
CTCCATTGACGTGGTTGGGT+TGG - chr1_3:24592381-24592400 Msa0111110:intron 55.0%
!! TGGTTGGGTTGGTTGACGAG+TGG - chr1_3:24592392-24592411 Msa0111110:intron 55.0%
!! GGTTGGGTTGGTTGACGAGT+GGG - chr1_3:24592393-24592412 Msa0111110:intron 55.0%
GTATTGGACTCACCTGTGGC+AGG + chr1_3:24592498-24592517 None:intergenic 55.0%
AGGACTTGTCCGTTGAGAGC+AGG + chr1_3:24592779-24592798 None:intergenic 55.0%
!! GAAACAGCATGGTGGACGTG+TGG + chr1_3:24593419-24593438 None:intergenic 55.0%
ACGGAGCATGGAGAAACGGA+GGG + chr1_3:24593477-24593496 None:intergenic 55.0%
AACGGAGCATGGAGAAACGG+AGG + chr1_3:24593478-24593497 None:intergenic 55.0%
TTTCATGCTGACCCTCACCC+GGG - chr1_3:24594552-24594571 Msa0111110:intron 55.0%
GGATCATATTCCCCGGGTGA+GGG + chr1_3:24594566-24594585 None:intergenic 55.0%
GAGTGCGGATCATATTCCCC+GGG + chr1_3:24594572-24594591 None:intergenic 55.0%
GGAGTGCGGATCATATTCCC+CGG + chr1_3:24594573-24594592 None:intergenic 55.0%
!! GACCAGGCTTTAGAAGGTGG+AGG - chr1_3:24596002-24596021 Msa0111110:intron 55.0%
!! CCAGGCTTTAGAAGGTGGAG+GGG - chr1_3:24596004-24596023 Msa0111110:intron 55.0%
!!! AGGGCTATCGGGGTTTTGGA+AGG - chr1_3:24596122-24596141 Msa0111110:intron 55.0%
!!! GGGCTATCGGGGTTTTGGAA+GGG - chr1_3:24596123-24596142 Msa0111110:intron 55.0%
GACAGGATGCACGGGAGAAA+TGG - chr1_3:24596555-24596574 Msa0111110:intron 55.0%
! CGTAAAGCACTCCTTAGCCG+AGG + chr1_3:24596840-24596859 None:intergenic 55.0%
ACAGCTGCCAAAAGTGGAGG+TGG - chr1_3:24596939-24596958 Msa0111110:intron 55.0%
TGCCAAAAGTGGAGGTGGAG+AGG - chr1_3:24596944-24596963 Msa0111110:intron 55.0%
GGAGGTGGAGAGGATCTGAA+AGG - chr1_3:24596954-24596973 Msa0111110:intron 55.0%
ATCTCAACAACCGCAGCCAG+TGG - chr1_3:24597046-24597065 Msa0111110:intron 55.0%
AACCGCAGCCAGTGGAAACA+CGG - chr1_3:24597054-24597073 Msa0111110:intron 55.0%
CTTAAGCGCCATAGGCAGCA+TGG + chr1_3:24597656-24597675 None:intergenic 55.0%
! TGCGGGCTTAAAGCGTCCAA+TGG + chr1_3:24597997-24598016 None:intergenic 55.0%
GTGCTGGAGTTCTTGACTGC+AGG - chr1_3:24598074-24598093 Msa0111110:intron 55.0%
GAACTTCTGCCAGTGTTGCC+GGG - chr1_3:24598297-24598316 Msa0111110:CDS 55.0%
GACGTTGGGAATGGGAGGAG+CGG + chr1_3:24589233-24589252 None:intergenic 60.0%
TACGGTAAGAACGGCGGCGA+CGG + chr1_3:24589272-24589291 None:intergenic 60.0%
! CGGAGCAGGTTTAGGATCGG+TGG + chr1_3:24589307-24589326 None:intergenic 60.0%
CCGTTGACAGGTTTGGCAGG+CGG + chr1_3:24589363-24589382 None:intergenic 60.0%
CCGCCTGCCAAACCTGTCAA+CGG - chr1_3:24589360-24589379 Msa0111110:intron 60.0%
ACCCCAGAGACACCGTTGAC+AGG + chr1_3:24589375-24589394 None:intergenic 60.0%
ATGCGAGTTGCAACGGAGCG+AGG + chr1_3:24590223-24590242 None:intergenic 60.0%
! TTCTCGGGTTGCGTGGGATG+TGG - chr1_3:24590276-24590295 Msa0111110:intron 60.0%
GACGTGGTGGTCATTGTCGG+TGG - chr1_3:24590366-24590385 Msa0111110:intron 60.0%
! TGTTCTTGGTGGGGGTGTGG+GGG - chr1_3:24591807-24591826 Msa0111110:intron 60.0%
TCAACCTCTCCCATTGCCGC+CGG - chr1_3:24591933-24591952 Msa0111110:intron 60.0%
GGAAAGCTACCGGCGGCAAT+GGG + chr1_3:24591945-24591964 None:intergenic 60.0%
TGGAAAGCTACCGGCGGCAA+TGG + chr1_3:24591946-24591965 None:intergenic 60.0%
GGGCCGCCTGAAGGAAAATG+GGG - chr1_3:24592095-24592114 Msa0111110:intron 60.0%
TTCATGCTGACCCTCACCCG+GGG - chr1_3:24594553-24594572 Msa0111110:intron 60.0%
CGGATCATATTCCCCGGGTG+AGG + chr1_3:24594567-24594586 None:intergenic 60.0%
!! CCCCTCCACCTTCTAAAGCC+TGG + chr1_3:24596007-24596026 None:intergenic 60.0%
CGGATGAATCCCCTCGGCTA+AGG - chr1_3:24596826-24596845 Msa0111110:intron 60.0%
ACCGCAGCCAGTGGAAACAC+GGG - chr1_3:24597055-24597074 Msa0111110:intron 60.0%
GGCTACTGCCATGCTGCCTA+TGG - chr1_3:24597645-24597664 Msa0111110:intron 60.0%
AAGAACGGCGGCGACGGAGA+GGG + chr1_3:24589266-24589285 None:intergenic 65.0%
TAAGAACGGCGGCGACGGAG+AGG + chr1_3:24589267-24589286 None:intergenic 65.0%
CGGTGGCGACAGCGGAGATA+CGG + chr1_3:24589290-24589309 None:intergenic 65.0%
! GTTCTTGGTGGGGGTGTGGG+GGG - chr1_3:24591808-24591827 Msa0111110:intron 65.0%
! GCCCGTGTTTCCACTGGCTG+CGG + chr1_3:24597059-24597078 None:intergenic 65.0%
AGGGCTGCCCGTGTTTCCAC+TGG + chr1_3:24597065-24597084 None:intergenic 65.0%
GCAGAGATGCCCGGCAACAC+TGG + chr1_3:24598309-24598328 None:intergenic 65.0%
GCTACCGGCGGCAATGGGAG+AGG + chr1_3:24591940-24591959 None:intergenic 70.0%
AACGGCGGCGACGGAGAGGG+AGG + chr1_3:24589263-24589282 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 24589009 24598613 24589009 ID=Msa0111110;Name=Msa0111110
chr1_3 mRNA 24589009 24598613 24589009 ID=Msa0111110-mRNA-1;Parent=Msa0111110;Name=Msa0111110-mRNA-1;_AED=0.10;_eAED=0.10;_QI=171|0.75|0.84|0.92|0.83|0.84|13|209|738
chr1_3 exon 24589009 24589352 24589009 ID=Msa0111110-mRNA-1:exon:8491;Parent=Msa0111110-mRNA-1
chr1_3 exon 24589498 24589728 24589498 ID=Msa0111110-mRNA-1:exon:8490;Parent=Msa0111110-mRNA-1
chr1_3 exon 24590483 24590806 24590483 ID=Msa0111110-mRNA-1:exon:8489;Parent=Msa0111110-mRNA-1
chr1_3 exon 24591414 24591787 24591414 ID=Msa0111110-mRNA-1:exon:8488;Parent=Msa0111110-mRNA-1
chr1_3 exon 24593001 24593088 24593001 ID=Msa0111110-mRNA-1:exon:8487;Parent=Msa0111110-mRNA-1
chr1_3 exon 24593848 24593991 24593848 ID=Msa0111110-mRNA-1:exon:8486;Parent=Msa0111110-mRNA-1
chr1_3 exon 24595118 24595243 24595118 ID=Msa0111110-mRNA-1:exon:8485;Parent=Msa0111110-mRNA-1
chr1_3 exon 24595323 24595330 24595323 ID=Msa0111110-mRNA-1:exon:8484;Parent=Msa0111110-mRNA-1
chr1_3 exon 24595397 24595549 24595397 ID=Msa0111110-mRNA-1:exon:8483;Parent=Msa0111110-mRNA-1
chr1_3 exon 24595668 24595773 24595668 ID=Msa0111110-mRNA-1:exon:8482;Parent=Msa0111110-mRNA-1
chr1_3 exon 24596258 24596401 24596258 ID=Msa0111110-mRNA-1:exon:8481;Parent=Msa0111110-mRNA-1
chr1_3 exon 24597304 24597474 24597304 ID=Msa0111110-mRNA-1:exon:8480;Parent=Msa0111110-mRNA-1
chr1_3 exon 24598230 24598613 24598230 ID=Msa0111110-mRNA-1:exon:8479;Parent=Msa0111110-mRNA-1
chr1_3 five_prime_UTR 24598443 24598613 24598443 ID=Msa0111110-mRNA-1:five_prime_utr;Parent=Msa0111110-mRNA-1
chr1_3 CDS 24598230 24598442 24598230 ID=Msa0111110-mRNA-1:cds;Parent=Msa0111110-mRNA-1
chr1_3 CDS 24597304 24597474 24597304 ID=Msa0111110-mRNA-1:cds;Parent=Msa0111110-mRNA-1
chr1_3 CDS 24596258 24596401 24596258 ID=Msa0111110-mRNA-1:cds;Parent=Msa0111110-mRNA-1
chr1_3 CDS 24595668 24595773 24595668 ID=Msa0111110-mRNA-1:cds;Parent=Msa0111110-mRNA-1
chr1_3 CDS 24595397 24595549 24595397 ID=Msa0111110-mRNA-1:cds;Parent=Msa0111110-mRNA-1
chr1_3 CDS 24595323 24595330 24595323 ID=Msa0111110-mRNA-1:cds;Parent=Msa0111110-mRNA-1
chr1_3 CDS 24595118 24595243 24595118 ID=Msa0111110-mRNA-1:cds;Parent=Msa0111110-mRNA-1
chr1_3 CDS 24593848 24593991 24593848 ID=Msa0111110-mRNA-1:cds;Parent=Msa0111110-mRNA-1
chr1_3 CDS 24593001 24593088 24593001 ID=Msa0111110-mRNA-1:cds;Parent=Msa0111110-mRNA-1
chr1_3 CDS 24591414 24591787 24591414 ID=Msa0111110-mRNA-1:cds;Parent=Msa0111110-mRNA-1
chr1_3 CDS 24590483 24590806 24590483 ID=Msa0111110-mRNA-1:cds;Parent=Msa0111110-mRNA-1
chr1_3 CDS 24589498 24589728 24589498 ID=Msa0111110-mRNA-1:cds;Parent=Msa0111110-mRNA-1
chr1_3 CDS 24589218 24589352 24589218 ID=Msa0111110-mRNA-1:cds;Parent=Msa0111110-mRNA-1
chr1_3 three_prime_UTR 24589009 24589217 24589009 ID=Msa0111110-mRNA-1:three_prime_utr;Parent=Msa0111110-mRNA-1
Gene Sequence

>Msa0111110

ATGGATACAGCATCATCACAACTCATCTACCGCGGAATCGATCCTTTACTCCGCTCCTCCCATTCCCAACGTCACAACAACCTCCCTCTCCGTCGCCGCCGTTCTTACCGTATCTCCGCTGTCGCCACCGATCCTAAACCTGCTCCGGTTACAACCGTCAACGGTTCTTCTTCAAGGTCTCCGCCTGCCAAACCTGTCAACGGTGTCTCTGGGGTAGATGAAAGTAGTGAATTTCTACCATTGGTGTATGATCCAGCTAGTATTACTGCATATTGGGGAAAACGTCCTCGCTCCGTTGCAACTCGCATTGTGCAGTTATTATCTGTTGCTGGAGGTTTTCTTTCTCGGGTTGCGTGGGATGTGGTTAACAAGAAGGTTAAAGAGAATGAGGTTGCCAGGGCTATTGAAATACGTGAAATTGTGACATCTTTGGGTCCAGCATACATAAAACTTGGGCAAGCATTGAGCATACGACCTGATATACTGTCACCTGCAGCAATGACAGAGTTGCAGAAGCTCTGTGATAAAGTTCCTTCATTTGCAGATGATGTGGCTATGGCTCTAATTGAAGAGGAACTTGGTCAGCCATGGCAAAATGTCTATTCTGAATTATCAACCTCTCCCATTGCCGCCGCATCTCTCGGACAGGTATATAAGGGCCGCCTGAAGGAAAATGGGGATATGGTTGCTGTTAAAGTGCAAAGACCTTTTGTTCTCGAGACAGTTACCATTGATTTATTCATTATCCGGAACCTTGGTTTGGCTCTTCGAAAATTTCCTCAGGCAATAACATTAGTCTCCATTGACGTGGTTGGGTTGGTTGACGAGTGGGCTGCTAGATTTTTTGAGGAGTTAGACTATGTGAATGAAGGTGAAAATGGAGACCGCTTCGCCGAAATGATGAAGAAAGACCTGCCACAGGTTGTAATACCAAGAACTTACAGCAAGTATACATCAAGGAGGGTTCTTACAACAGAATGGATTGACGGAGAGAAGCTGTCACAGAGCAAAGAAAGCAATGTCGGAGAATTAGTTAATGTTGGAGTCATCTGCTACCTAAAACAGCTGCTTGATACTGGCTTTTTTCATGCTGACCCTCACCCGGGGAATATGATCCGCACTCCTGATGGAAAACTTGCAATACTTGACTTTGGGCTTGTTACAAAATTGACCGACGATCAAAAGTATGGAATGATTGAAGCAATTGCTCATCTCATCCATCGGGATTATCCAGCCATAGTGAAAGACTTCGTTAAACTTGGTTTCATCCCAGATGGAGTCAATTTAGATCCTATCTTGCCAGTGCTTGCAAAGGTCTTTGACCAGGCTTTAGAAGGTGGAGGGGCAAAAAACATCAACTTTCAGGAGCTGGCATCAGATTTAGCACAAATTACCTTTGATTATCCTTTTAGGATACCCCCATACTTTGCCCTTATAATTAGGGCTATCGGGGTTTTGGAAGGGATAGCTTTAGTAGGAAATCCTGATTTTGCCATTGTTGATGAAGCCTATCCATATATTGCACAGAGACTCTTGACGGATGAATCCCCTCGGCTAAGGAGTGCTTTACGTTACACTATATATGGGAAATCTGGAGTTTTCGATGCTGAAAGATTTATTGATGTCATGCAAGCCTTCGAGAATTTTATTACAGCTGCCAAAAGTGGAGGTGGAGAGGATCTGAAAGGGAGTATGGCTGAGCTTGGGCTTATTACTAACCGGTCAGAATATCTCTTGCCGGGATTCCAGTCTGTAACATCTCAACAACCGCAGCCAGTGGAAACACGGGCAGCCCTAGCATTTTTGCTGTCTGATAAGGGGAATTTTTTCCGAGAATTTCTTTTGGACGAGATTGTCAAGGGCATTGATGCTGTGACAAGGGAACAAATGGTAAGAATTATGTCCTTACTAGGAGTTCAGAATGCAAGCCCTATTTTCGGTATGGTACCTACCATTGGACGCTTTAAGCCCGCAGCTCTTATACCCACCATAACTGAAGAGGATAAAGTTATACTGAACAATGTCCAGAAAGTGCTGGAGTTCTTGACTGCAGGAAGCACTCTGTCAAGCACATCTAGTCAGGCTCTCAATGTTCCTCAGATTATCCAAGAACTTCTGCCAGTGTTGCCGGGCATCTCTGCTAAAGTGCTTCCTGATGTTCTTAGCAGATTATCTTCTCGGGTATTAGCGCGATTAATTCGTGATGCATTTTTGTAA
Protein sequence

>Msa0111110

MDTASSQLIYRGIDPLLRSSHSQRHNNLPLRRRRSYRISAVATDPKPAPVTTVNGSSSRSPPAKPVNGVSGVDESSEFLPLVYDPASITAYWGKRPRSVATRIVQLLSVAGGFLSRVAWDVVNKKVKENEVARAIEIREIVTSLGPAYIKLGQALSIRPDILSPAAMTELQKLCDKVPSFADDVAMALIEEELGQPWQNVYSELSTSPIAAASLGQVYKGRLKENGDMVAVKVQRPFVLETVTIDLFIIRNLGLALRKFPQAITLVSIDVVGLVDEWAARFFEELDYVNEGENGDRFAEMMKKDLPQVVIPRTYSKYTSRRVLTTEWIDGEKLSQSKESNVGELVNVGVICYLKQLLDTGFFHADPHPGNMIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYPAIVKDFVKLGFIPDGVNLDPILPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYIAQRLLTDESPRLRSALRYTIYGKSGVFDAERFIDVMQAFENFITAAKSGGGEDLKGSMAELGLITNRSEYLLPGFQSVTSQQPQPVETRAALAFLLSDKGNFFREFLLDEIVKGIDAVTREQMVRIMSLLGVQNASPIFGMVPTIGRFKPAALIPTITEEDKVILNNVQKVLEFLTAGSTLSSTSSQALNVPQIIQELLPVLPGISAKVLPDVLSRLSSRVLARLIRDAFL*