AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1407160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407160 MtrunA17_Chr5g0448751 86.801 697 32 8 17 710 1 640 0.0 1040
Msa1407160 MtrunA17_Chr3g0079741 39.060 617 275 12 121 710 124 666 2.09e-115 364
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407160 AT4G35440.1 56.728 654 190 9 76 710 52 631 0.0 639
Msa1407160 AT4G35440.2 56.728 654 190 9 76 710 52 631 0.0 639
Msa1407160 AT1G55620.2 38.740 635 299 9 79 691 104 670 1.56e-118 374
Msa1407160 AT1G55620.1 39.252 535 248 6 169 691 5 474 5.35e-97 311

Find 181 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCCCGCCCTTTCTTAA+AGG 0.140965 tig0023272:-71846 Msa1407160:CDS
TATGCCCCATCTCTCTTTAT+TGG 0.172919 tig0023272:-71030 Msa1407160:CDS
GTAATACTTGTTCCCGCTTT+TGG 0.215841 tig0023272:-71908 Msa1407160:CDS
AAAAGCTTCTTTCCCTATAC+TGG 0.219006 tig0023272:-71244 Msa1407160:CDS
GATCTACAAGAAGATATTTC+TGG 0.225097 tig0023272:+69324 None:intergenic
AAACCCCAATAGAGGATTTC+AGG 0.241095 tig0023272:+71186 None:intergenic
TTCTGAATGGATTCGTAATT+CGG 0.248961 tig0023272:-72186 Msa1407160:CDS
TGCTTGGTTGGTCTCTTAAC+AGG 0.250823 tig0023272:-72149 Msa1407160:CDS
TTCAGTCTCTAACCCTTTCT+AGG 0.269824 tig0023272:+69649 None:intergenic
GAGCAGTAGGCTTGTCTTCA+TGG 0.271244 tig0023272:-69428 Msa1407160:CDS
GGTTTCAATGCTGCCGTTGC+TGG 0.284939 tig0023272:-71656 Msa1407160:CDS
GCTTCTGTCATTTCTGAGAT+TGG 0.287776 tig0023272:-71530 Msa1407160:CDS
CGTCACAAATCTTGTCTTCA+TGG 0.289773 tig0023272:+69161 None:intergenic
CTCTTTATTGGTGGTGCAAC+TGG 0.292571 tig0023272:-71018 Msa1407160:CDS
GTTGCATCACCACAAGCTTA+TGG 0.300491 tig0023272:-70922 Msa1407160:CDS
CATTCGAGCGTTTGGAAAAT+CGG 0.306344 tig0023272:-69022 Msa1407160:CDS
ATATCCTGAAATCCTCTATT+GGG 0.308167 tig0023272:-71190 Msa1407160:CDS
TATATCCTGAAATCCTCTAT+TGG 0.313244 tig0023272:-71191 Msa1407160:CDS
CTTGGAGACATTCGAGCGTT+TGG 0.318252 tig0023272:-69030 Msa1407160:CDS
GGAATGGCTGCGACTCTTGC+AGG 0.323506 tig0023272:-69531 Msa1407160:CDS
AGCTCGGAGGGGAAGGAGTT+TGG 0.326802 tig0023272:+71706 None:intergenic
ACTTAGGAATGATACAATTA+TGG 0.347813 tig0023272:-72592 Msa1407160:five_prime_UTR
TTTGTTGTGGGATGGGATTC+CGG 0.349408 tig0023272:-71984 Msa1407160:CDS
GCTGCTACACTTTGATTTGT+TGG 0.351267 tig0023272:-69716 Msa1407160:CDS
CTCCTTCCCCTCCGAGCTGC+TGG 0.352742 tig0023272:-71701 Msa1407160:CDS
TTTAGGCACTGGTAATTCCT+TGG 0.356178 tig0023272:-71804 Msa1407160:CDS
ACTTCTCTCTGTCGTGCTTC+CGG 0.359138 tig0023272:-71069 Msa1407160:CDS
CTCCCGCTGTATTTATTGTT+GGG 0.360626 tig0023272:-71360 Msa1407160:CDS
GAAAGGGCGGGAATTGGAAT+TGG 0.369550 tig0023272:+71853 None:intergenic
GATACTGATGATACTTTGAT+TGG 0.372612 tig0023272:-69063 Msa1407160:CDS
ATTGCAGCTTCTATTACTTT+AGG 0.372973 tig0023272:-71821 Msa1407160:CDS
CAGATAAACCTCCCAGTATA+GGG 0.373492 tig0023272:+71232 None:intergenic
TATATGATGTAGACCAAGAT+AGG 0.374540 tig0023272:+71310 None:intergenic
TCGTTTCATTGACCCTATCT+TGG 0.384744 tig0023272:-71323 Msa1407160:CDS
TCTGAATGGATTCGTAATTC+GGG 0.387923 tig0023272:-72185 Msa1407160:CDS
GATGGAATAATGGGTGGCTT+AGG 0.388765 tig0023272:-72440 Msa1407160:CDS
TTAGGCACTGGTAATTCCTT+GGG 0.389974 tig0023272:-71803 Msa1407160:CDS
GGTGCAACTGGTATGGCTTA+TGG 0.397493 tig0023272:-71006 Msa1407160:CDS
ACAGATAAACCTCCCAGTAT+AGG 0.404053 tig0023272:+71231 None:intergenic
TCTGCTGCCGGCCTCTCTGC+TGG 0.404243 tig0023272:-71677 Msa1407160:CDS
CTTTAAGAAAGGGCGGGAAT+TGG 0.404300 tig0023272:+71847 None:intergenic
AACCATGAGGCACCTCTATC+CGG 0.405987 tig0023272:+71965 None:intergenic
GCTCCCGCTGTATTTATTGT+TGG 0.406865 tig0023272:-71361 Msa1407160:CDS
TGCAATAACAGTAACACGTT+CGG 0.407092 tig0023272:-72345 Msa1407160:CDS
TTTGGAAAATCGGCAAAGTC+TGG 0.407852 tig0023272:-69012 Msa1407160:CDS
ATGAGTTGTTGTTGTTATAG+TGG 0.414832 tig0023272:-72479 Msa1407160:CDS
CTGCTACACTTTGATTTGTT+GGG 0.415556 tig0023272:-69715 Msa1407160:CDS
TTGCATCACCACAAGCTTAT+GGG 0.419579 tig0023272:-70921 Msa1407160:CDS
GCCCCATCTCTCTTTATTGG+TGG 0.420047 tig0023272:-71027 Msa1407160:CDS
GCCAACTTCACAACTACTAA+TGG 0.423560 tig0023272:-72287 Msa1407160:CDS
AGTATAGGGAAAGAAGCTTT+TGG 0.424009 tig0023272:+71246 None:intergenic
ATAATATCTTCATGCTTGGT+TGG 0.426952 tig0023272:-72161 Msa1407160:CDS
TTATTGTTGGGTATCTTATG+TGG 0.429316 tig0023272:-71348 Msa1407160:CDS
CAGCGTATGGTTGTCTATGC+TGG 0.432242 tig0023272:-69742 Msa1407160:CDS
GGGAATAATATCTTCATGCT+TGG 0.434628 tig0023272:-72165 Msa1407160:CDS
ATCCAGCAGCTCGGAGGGGA+AGG 0.438621 tig0023272:+71699 None:intergenic
TTCGTGATTTGTTGTGGGAT+GGG 0.439926 tig0023272:-71991 Msa1407160:CDS
GCAATAACAGTAACACGTTC+GGG 0.445751 tig0023272:-72344 Msa1407160:CDS
TGTAAGGAGAACATTAGTTT+CGG 0.452473 tig0023272:-69187 Msa1407160:CDS
TGTTTGAGGAAGAAGAAGAA+AGG 0.453309 tig0023272:+72318 None:intergenic
TATTGGTGGTGCAACTGGTA+TGG 0.455094 tig0023272:-71013 Msa1407160:CDS
GACAAAGAGAGGTGATGAAA+GGG 0.455593 tig0023272:-69391 Msa1407160:CDS
GGAGAACGAAAGTCGTAGTC+TGG 0.455808 tig0023272:+71479 None:intergenic
GTCATTTCTGAGATTGGCCT+CGG 0.456281 tig0023272:-71524 Msa1407160:CDS
CAGTGGAAGTAGTATTGGTA+AGG 0.459156 tig0023272:+71573 None:intergenic
TACGACTTTCGTTCTCCTGC+TGG 0.462599 tig0023272:-71473 Msa1407160:intron
ATAATAGCCTCCTACTAATC+CGG 0.472882 tig0023272:+71050 None:intergenic
AGCAGATCCAGCAGCTCGGA+GGG 0.474259 tig0023272:+71694 None:intergenic
ATGAAACAATGAATTATGTA+AGG 0.474357 tig0023272:-69203 Msa1407160:CDS
GGGGAAGAAGATGGAATAAT+GGG 0.474940 tig0023272:-72449 Msa1407160:CDS
AATAACAGTGGAAGTAGTAT+TGG 0.476615 tig0023272:+71568 None:intergenic
AGAGAAGGAGAAGTTGAGGA+AGG 0.476894 tig0023272:-72227 Msa1407160:CDS
CAAGAAGATATTTCTGGAAA+CGG 0.477909 tig0023272:+69330 None:intergenic
TTGGAAATTCCATTGCCAAA+TGG 0.479995 tig0023272:-71757 Msa1407160:CDS
CGTGGAGAGACCTTTGACAA+AGG 0.482833 tig0023272:+71131 None:intergenic
CTATTCAAGAAACATGGAAA+AGG 0.487861 tig0023272:-71931 Msa1407160:CDS
TGGTAATTCCTTGGGTCCTG+AGG 0.487982 tig0023272:-71795 Msa1407160:CDS
ATGAAATTCGTGATTTGTTG+TGG 0.489249 tig0023272:-71997 Msa1407160:CDS
ATGTCGACGCTGGGACCCTC+AGG 0.492267 tig0023272:+71779 None:intergenic
TGTTGTTATAGTGGAATGGC+GGG 0.494003 tig0023272:-72470 Msa1407160:CDS
AGGAGTGGAAGCAATCCATT+TGG 0.495533 tig0023272:+71742 None:intergenic
AACAAGAAGACCTCCAAAAG+CGG 0.500440 tig0023272:+71895 None:intergenic
GCTTCTATTACTTTAGGCAC+TGG 0.501302 tig0023272:-71815 Msa1407160:CDS
CGAGCTGCTGGATCTGCTGC+CGG 0.501727 tig0023272:-71689 Msa1407160:CDS
CAGCCATTCCAACCTGCAAA+AGG 0.502309 tig0023272:+69544 None:intergenic
TGAAATTCGTGATTTGTTGT+GGG 0.502918 tig0023272:-71996 Msa1407160:CDS
CATTCTCAAAACCCCAATAG+AGG 0.505904 tig0023272:+71178 None:intergenic
GGAATTTCCAATGTCGACGC+TGG 0.506064 tig0023272:+71769 None:intergenic
AGATCAATTGAGTTATCTAC+TGG 0.506435 tig0023272:-69306 Msa1407160:CDS
TGTGATTAACCTCTCTCTGT+TGG 0.506709 tig0023272:-70947 Msa1407160:CDS
GCTGCAATAGCCTTTAAGAA+AGG 0.508201 tig0023272:+71836 None:intergenic
TTGTTGTTATAGTGGAATGG+CGG 0.509331 tig0023272:-72471 Msa1407160:CDS
ACCATTAGTAGTTGTGAAGT+TGG 0.509522 tig0023272:+72286 None:intergenic
GACAATCTTCACAAGGCCAC+TGG 0.512827 tig0023272:-71273 Msa1407160:CDS
TTAGGATGTGCGGTTGGAGT+CGG 0.514567 tig0023272:-72422 Msa1407160:CDS
ATTGAAACCAGCAGAGAGGC+CGG 0.514866 tig0023272:+71670 None:intergenic
CACCACCAATAAAGAGAGAT+GGG 0.516008 tig0023272:+71025 None:intergenic
TCGGAGGGGAAGGAGTTTGG+CGG 0.517789 tig0023272:+71709 None:intergenic
CTATCTTTGCTATTGTGAAG+CGG 0.518762 tig0023272:+72248 None:intergenic
TATTCAAGAAACATGGAAAA+GGG 0.520527 tig0023272:-71930 Msa1407160:CDS
CTGCAATAGCCTTTAAGAAA+GGG 0.524525 tig0023272:+71837 None:intergenic
GAGTTCTTCAACCAAGTAGT+TGG 0.525868 tig0023272:-72394 Msa1407160:CDS
TTGTTATAGTGGAATGGCGG+GGG 0.528796 tig0023272:-72468 Msa1407160:CDS
TTGAATTGACACAGGACTAT+CGG 0.531346 tig0023272:-69470 Msa1407160:CDS
GGTAATTCCTTGGGTCCTGA+GGG 0.533941 tig0023272:-71794 Msa1407160:CDS
ACAAGAAGACCTCCAAAAGC+GGG 0.535676 tig0023272:+71896 None:intergenic
AGATAGAGAAGGAGAAGTTG+AGG 0.535908 tig0023272:-72231 Msa1407160:CDS
TAGTCTGGAACTTGAAAGGC+AGG 0.536027 tig0023272:+71494 None:intergenic
ATTCGTGATTTGTTGTGGGA+TGG 0.536955 tig0023272:-71992 Msa1407160:CDS
GAATCTCGACCCTTTGTCAA+AGG 0.536999 tig0023272:-71141 Msa1407160:CDS
GAGGGTCCCAGCGTCGACAT+TGG 0.538932 tig0023272:-71776 Msa1407160:CDS
TGATGATAATGCCAACTACT+TGG 0.542078 tig0023272:+72383 None:intergenic
TTGATTGGTTTATTGACACT+TGG 0.544041 tig0023272:-69048 Msa1407160:CDS
TTACCACTACTTGGAGCAGT+AGG 0.544067 tig0023272:-69441 Msa1407160:CDS
AGCGAAGAAACAACCAGCAA+CGG 0.545696 tig0023272:+71643 None:intergenic
AGACAAAGAGAGGTGATGAA+AGG 0.546343 tig0023272:-69392 Msa1407160:CDS
AGTTTGGCGGAAGTGAAAAG+AGG 0.546347 tig0023272:+71722 None:intergenic
GTGGAGAGACCTTTGACAAA+GGG 0.546880 tig0023272:+71132 None:intergenic
ATACTGGGAGGTTTATCTGT+AGG 0.547076 tig0023272:-71228 Msa1407160:CDS
AGAAGCAGAACTGCAGTAAG+TGG 0.547744 tig0023272:+69495 None:intergenic
GAACTGCAGTAAGTGGTACT+TGG 0.552159 tig0023272:+69502 None:intergenic
AAAGCTTCTTTCCCTATACT+GGG 0.555375 tig0023272:-71243 Msa1407160:CDS
CATGAAGACAAGATTTGTGA+CGG 0.555715 tig0023272:-69160 Msa1407160:CDS
TTGTTGTTGTTATAGTGGAA+TGG 0.555761 tig0023272:-72474 Msa1407160:CDS
CGGCAGCAGATCCAGCAGCT+CGG 0.555894 tig0023272:+71690 None:intergenic
GCACCACCAATAAAGAGAGA+TGG 0.559910 tig0023272:+71024 None:intergenic
GGAGAGTTCAAGTAGTGTAG+AGG 0.565036 tig0023272:-69235 Msa1407160:CDS
TTTGAGTAAATCATGTCAAG+TGG 0.568231 tig0023272:-69256 Msa1407160:CDS
AGATCTATTACTTTAGTAAG+CGG 0.571523 tig0023272:+69123 None:intergenic
CAAGGATTACAACAACACTT+AGG 0.572730 tig0023272:-72608 None:intergenic
GCTGGGACCCTCAGGACCCA+AGG 0.573710 tig0023272:+71787 None:intergenic
GTTGGCGTAATTCTTGTTTG+AGG 0.573848 tig0023272:+72304 None:intergenic
TACCCAACAATAAATACAGC+GGG 0.573907 tig0023272:+71358 None:intergenic
GAAAAGAAGCTGGCGTGGCA+CGG 0.574919 tig0023272:-69584 Msa1407160:CDS
AAATGTTCAGGAAAAGAAGC+TGG 0.576187 tig0023272:-69594 Msa1407160:intron
GGGAATTGGAATTGGAAAGA+AGG 0.576410 tig0023272:+71861 None:intergenic
GAATTTCCAATGTCGACGCT+GGG 0.578311 tig0023272:+71770 None:intergenic
GTCGTAGTCTGGAACTTGAA+AGG 0.578609 tig0023272:+71490 None:intergenic
CAGGATATAGCAATGCTATG+AGG 0.579477 tig0023272:+71205 None:intergenic
AGTGGAAGTAGTATTGGTAA+GGG 0.581373 tig0023272:+71574 None:intergenic
TGGGATGGGATTCCGGATAG+AGG 0.587719 tig0023272:-71977 Msa1407160:CDS
AATAGCCTTTAAGAAAGGGC+GGG 0.587840 tig0023272:+71841 None:intergenic
ATCACCACAAGCTTATGGGC+TGG 0.588084 tig0023272:-70917 Msa1407160:intron
CACAATAGCAAAGATAGAGA+AGG 0.590816 tig0023272:-72242 Msa1407160:CDS
CAGCAGATCCAGCAGCTCGG+AGG 0.593260 tig0023272:+71693 None:intergenic
GTCTGGAAGCGAAAATCGAA+AGG 0.593828 tig0023272:-68995 Msa1407160:CDS
GCAGATCCAGCAGCTCGGAG+GGG 0.594250 tig0023272:+71695 None:intergenic
GTTGTTATAGTGGAATGGCG+GGG 0.594261 tig0023272:-72469 Msa1407160:CDS
GCTTCTGTTTGAATTGACAC+AGG 0.594321 tig0023272:-69478 Msa1407160:CDS
GGCGGAAGTGAAAAGAGGAG+TGG 0.597862 tig0023272:+71727 None:intergenic
GGAAGCAATCCATTTGGCAA+TGG 0.599286 tig0023272:+71748 None:intergenic
AACAGAGAGAGGTTAATCAC+AGG 0.599581 tig0023272:+70949 None:intergenic
TTCCGGATAGAGGTGCCTCA+TGG 0.606371 tig0023272:-71967 Msa1407160:CDS
TCGCTGTTGAGTCTGTCTTG+TGG 0.606446 tig0023272:-71625 Msa1407160:CDS
TATCCTGAAATCCTCTATTG+GGG 0.606610 tig0023272:-71189 Msa1407160:CDS
CAATAGCCTTTAAGAAAGGG+CGG 0.607717 tig0023272:+71840 None:intergenic
TTCAGGAAAAGAAGCTGGCG+TGG 0.609126 tig0023272:-69589 Msa1407160:intron
ATATGATGTAGACCAAGATA+GGG 0.610894 tig0023272:+71311 None:intergenic
TTAGAAGAATCAGAATCAGA+AGG 0.614728 tig0023272:+71602 None:intergenic
AAGCCTACTGCTCCAAGTAG+TGG 0.620361 tig0023272:+69438 None:intergenic
ATGCAACTTCCAACAGAGAG+AGG 0.623135 tig0023272:+70938 None:intergenic
AAGCGCCTATTCAAGAAACA+TGG 0.627826 tig0023272:-71937 Msa1407160:CDS
GGTGGCTTAGGATGTGCGGT+TGG 0.630689 tig0023272:-72428 Msa1407160:CDS
ACTGGTAATACCTCTGCTGA+AGG 0.643612 tig0023272:-69288 Msa1407160:CDS
TCATCTGTACAGACAAAGAG+AGG 0.647494 tig0023272:-69402 Msa1407160:CDS
GCTTCTTTCCCTATACTGGG+AGG 0.653552 tig0023272:-71240 Msa1407160:CDS
ATATGACACACCTTCAGCAG+AGG 0.656977 tig0023272:+69278 None:intergenic
GACAGCACTTAGAATAACAG+TGG 0.657583 tig0023272:+71556 None:intergenic
CTTTGTCAAAGGTCTCTCCA+CGG 0.660620 tig0023272:-71130 Msa1407160:CDS
TTTATTTGACAATCTTCACA+AGG 0.665068 tig0023272:-71280 Msa1407160:CDS
CGTACCAGCCCATAAGCTTG+TGG 0.669025 tig0023272:+70913 None:intergenic
TAGCTGAAGCAATAGATCCG+TGG 0.670137 tig0023272:+71113 None:intergenic
ACTTCACAACTACTAATGGT+CGG 0.672014 tig0023272:-72283 Msa1407160:CDS
GAAGAAGATGGAATAATGGG+TGG 0.676584 tig0023272:-72446 Msa1407160:CDS
TCTATTGCTTCAGCTAATAG+CGG 0.683916 tig0023272:-71106 Msa1407160:CDS
AATGGGTGGCTTAGGATGTG+CGG 0.692887 tig0023272:-72432 Msa1407160:CDS
CAGCATTGAAACCAGCAGAG+AGG 0.695496 tig0023272:+71666 None:intergenic
ATACCCAACAATAAATACAG+CGG 0.708432 tig0023272:+71357 None:intergenic
ACCACCAATAAAGAGAGATG+GGG 0.717265 tig0023272:+71026 None:intergenic
AGGCGCTTCTCTCAACCATG+AGG 0.726086 tig0023272:+71952 None:intergenic
AAGATAGGGTCAATGAAACG+AGG 0.733840 tig0023272:+71325 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATCATATTATATATATC+AGG + tig0023272:70174-70193 None:intergenic 10.0%
!! TGATAATAACTATGAAATAT+AGG - tig0023272:71179-71198 Msa1407160:CDS 15.0%
!! AGATTAATTTCTTATCTTAT+AGG + tig0023272:71239-71258 None:intergenic 15.0%
!!! GATATTATTTTATAGTATCT+TGG + tig0023272:71273-71292 None:intergenic 15.0%
!! CATCATACTTAAAAAAAGAA+AGG + tig0023272:69519-69538 None:intergenic 20.0%
!! TTCAAAATCATGATATGAAT+CGG + tig0023272:70135-70154 None:intergenic 20.0%
!! ATAACAAGATAATATATTGC+AGG + tig0023272:70943-70962 None:intergenic 20.0%
!! ATAAATCTATGAATTCAGAA+TGG - tig0023272:71346-71365 Msa1407160:CDS 20.0%
!!! TGTTTGAAACAAATAAGAAA+AGG - tig0023272:71567-71586 Msa1407160:CDS 20.0%
!!! GTTTGAAACAAATAAGAAAA+GGG - tig0023272:71568-71587 Msa1407160:CDS 20.0%
!! TGTAATATATAGTAGTAACA+TGG - tig0023272:71698-71717 Msa1407160:CDS 20.0%
!!! AAAATTTTCTCATATCATGT+GGG - tig0023272:71724-71743 Msa1407160:CDS 20.0%
!! AGACAAATGATATAATATAC+TGG + tig0023272:71952-71971 None:intergenic 20.0%
!! ATGAAACAATGAATTATGTA+AGG - tig0023272:72368-72387 Msa1407160:CDS 20.0%
! ACTTAGGAATGATACAATTA+TGG - tig0023272:68979-68998 Msa1407160:CDS 25.0%
! TATTCAAGAAACATGGAAAA+GGG - tig0023272:69641-69660 Msa1407160:intron 25.0%
! TTTATTTGACAATCTTCACA+AGG - tig0023272:70291-70310 Msa1407160:intron 25.0%
!!! TTTGGTATTTCTTGTTTTCT+TGG - tig0023272:70704-70723 Msa1407160:intron 25.0%
! CGTTAAATTAGTAAACCTTA+TGG + tig0023272:70887-70906 None:intergenic 25.0%
!! TATCTTGTTATCTTAGTTGA+AGG - tig0023272:70952-70971 Msa1407160:CDS 25.0%
!! GCTTATTTCTCATAAAGAAA+AGG + tig0023272:70982-71001 None:intergenic 25.0%
! ATAAGTTTCCTTGTGTAATT+AGG + tig0023272:71157-71176 None:intergenic 25.0%
!!! TAGTCTAAGATATTTTGAGA+TGG - tig0023272:71204-71223 Msa1407160:CDS 25.0%
!!! AGTCTAAGATATTTTGAGAT+GGG - tig0023272:71205-71224 Msa1407160:CDS 25.0%
!!! TTTGTATCAAGTTTTATCGT+GGG + tig0023272:71325-71344 None:intergenic 25.0%
!!! TTTTGTATCAAGTTTTATCG+TGG + tig0023272:71326-71345 None:intergenic 25.0%
!!! TATGAATTCAGAATGGATTA+GGG - tig0023272:71353-71372 Msa1407160:CDS 25.0%
! AAAACAAACTAAAACGGTAT+TGG - tig0023272:71438-71457 Msa1407160:intron 25.0%
! AAACAAACTAAAACGGTATT+GGG - tig0023272:71439-71458 Msa1407160:intron 25.0%
! ATCTTCCATGATAAAGAAAA+AGG - tig0023272:71610-71629 Msa1407160:CDS 25.0%
!! GAAAATTTTCTCATATCATG+TGG - tig0023272:71723-71742 Msa1407160:CDS 25.0%
!! TCAGAGTTCAAAACAAATTT+TGG - tig0023272:71782-71801 Msa1407160:CDS 25.0%
! AGATCTATTACTTTAGTAAG+CGG + tig0023272:72451-72470 None:intergenic 25.0%
! ATGAGTTGTTGTTGTTATAG+TGG - tig0023272:69092-69111 Msa1407160:CDS 30.0%
! TTGTTGTTGTTATAGTGGAA+TGG - tig0023272:69097-69116 Msa1407160:CDS 30.0%
! TTCTGAATGGATTCGTAATT+CGG - tig0023272:69385-69404 Msa1407160:CDS 30.0%
ATAATATCTTCATGCTTGGT+TGG - tig0023272:69410-69429 Msa1407160:CDS 30.0%
TGTGATCAATATCAATATGC+AGG - tig0023272:69548-69567 Msa1407160:CDS 30.0%
!! ATGAAATTCGTGATTTGTTG+TGG - tig0023272:69574-69593 Msa1407160:CDS 30.0%
!! TGAAATTCGTGATTTGTTGT+GGG - tig0023272:69575-69594 Msa1407160:CDS 30.0%
! CTTTTCCATGTTTCTTGAAT+AGG + tig0023272:69642-69661 None:intergenic 30.0%
CTATTCAAGAAACATGGAAA+AGG - tig0023272:69640-69659 Msa1407160:intron 30.0%
ATTGCAGCTTCTATTACTTT+AGG - tig0023272:69750-69769 Msa1407160:intron 30.0%
TTAGAAGAATCAGAATCAGA+AGG + tig0023272:69972-69991 None:intergenic 30.0%
AATAACAGTGGAAGTAGTAT+TGG + tig0023272:70006-70025 None:intergenic 30.0%
ATACCCAACAATAAATACAG+CGG + tig0023272:70217-70236 None:intergenic 30.0%
TTATTGTTGGGTATCTTATG+TGG - tig0023272:70223-70242 Msa1407160:intron 30.0%
ATATGATGTAGACCAAGATA+GGG + tig0023272:70263-70282 None:intergenic 30.0%
TATATGATGTAGACCAAGAT+AGG + tig0023272:70264-70283 None:intergenic 30.0%
TATATCCTGAAATCCTCTAT+TGG - tig0023272:70380-70399 Msa1407160:intron 30.0%
ATATCCTGAAATCCTCTATT+GGG - tig0023272:70381-70400 Msa1407160:intron 30.0%
! ATCGTGTTTTTCTTCTCTTT+GGG - tig0023272:70731-70750 Msa1407160:intron 30.0%
ATTGTGAACACTGCAAATAT+AGG + tig0023272:70827-70846 None:intergenic 30.0%
CATAAGATAACTGAAGAGAA+AGG + tig0023272:70915-70934 None:intergenic 30.0%
! TGGCATTTTATCTTAGTTGA+AGG - tig0023272:71019-71038 Msa1407160:CDS 30.0%
TTTAAATATATGCCAGTGCT+TGG + tig0023272:71112-71131 None:intergenic 30.0%
TTCCTTGTGTAATTAGGATT+TGG + tig0023272:71151-71170 None:intergenic 30.0%
!!! GTCTAAGATATTTTGAGATG+GGG - tig0023272:71206-71225 Msa1407160:CDS 30.0%
! CTATGAATTCAGAATGGATT+AGG - tig0023272:71352-71371 Msa1407160:CDS 30.0%
ACTGGCAAAACAAACTAAAA+CGG - tig0023272:71432-71451 Msa1407160:intron 30.0%
TGAAACAAATAAGAAAAGGG+AGG - tig0023272:71571-71590 Msa1407160:CDS 30.0%
GAAACAAATAAGAAAAGGGA+GGG - tig0023272:71572-71591 Msa1407160:CDS 30.0%
TTCCATGATAAAGAAAAAGG+AGG - tig0023272:71613-71632 Msa1407160:CDS 30.0%
TCCATGATAAAGAAAAAGGA+GGG - tig0023272:71614-71633 Msa1407160:CDS 30.0%
! TATTACAGACATGTTAGTCT+TGG + tig0023272:71685-71704 None:intergenic 30.0%
!!! ATTTGTTTTGAACTCTGAAC+TGG + tig0023272:71780-71799 None:intergenic 30.0%
CTTGAAAAAAGACCTAGAAA+GGG - tig0023272:71910-71929 Msa1407160:CDS 30.0%
! TTTGTCTTTTGCAAATGTTC+AGG - tig0023272:71965-71984 Msa1407160:CDS 30.0%
!! CAAGAAGATATTTCTGGAAA+CGG + tig0023272:72244-72263 None:intergenic 30.0%
GATCTACAAGAAGATATTTC+TGG + tig0023272:72250-72269 None:intergenic 30.0%
AGATCAATTGAGTTATCTAC+TGG - tig0023272:72265-72284 Msa1407160:CDS 30.0%
TTTGAGTAAATCATGTCAAG+TGG - tig0023272:72315-72334 Msa1407160:CDS 30.0%
! TGTAAGGAGAACATTAGTTT+CGG - tig0023272:72384-72403 Msa1407160:CDS 30.0%
GATACTGATGATACTTTGAT+TGG - tig0023272:72508-72527 Msa1407160:five_prime_UTR 30.0%
!! TTGATTGGTTTATTGACACT+TGG - tig0023272:72523-72542 Msa1407160:five_prime_UTR 30.0%
! TTGTTGTTATAGTGGAATGG+CGG - tig0023272:69100-69119 Msa1407160:CDS 35.0%
! TGATGATAATGCCAACTACT+TGG + tig0023272:69191-69210 None:intergenic 35.0%
TGCAATAACAGTAACACGTT+CGG - tig0023272:69226-69245 Msa1407160:CDS 35.0%
TGTTTGAGGAAGAAGAAGAA+AGG + tig0023272:69256-69275 None:intergenic 35.0%
ACCATTAGTAGTTGTGAAGT+TGG + tig0023272:69288-69307 None:intergenic 35.0%
ACTTCACAACTACTAATGGT+CGG - tig0023272:69288-69307 Msa1407160:CDS 35.0%
!! CTATCTTTGCTATTGTGAAG+CGG + tig0023272:69326-69345 None:intergenic 35.0%
CACAATAGCAAAGATAGAGA+AGG - tig0023272:69329-69348 Msa1407160:CDS 35.0%
! TCTGAATGGATTCGTAATTC+GGG - tig0023272:69386-69405 Msa1407160:CDS 35.0%
GGGAATAATATCTTCATGCT+TGG - tig0023272:69406-69425 Msa1407160:CDS 35.0%
! CTGCAATAGCCTTTAAGAAA+GGG + tig0023272:69737-69756 None:intergenic 35.0%
TTGGAAATTCCATTGCCAAA+TGG - tig0023272:69814-69833 Msa1407160:intron 35.0%
!! AGTGGAAGTAGTATTGGTAA+GGG + tig0023272:70000-70019 None:intergenic 35.0%
TACCCAACAATAAATACAGC+GGG + tig0023272:70216-70235 None:intergenic 35.0%
! AGTATAGGGAAAGAAGCTTT+TGG + tig0023272:70328-70347 None:intergenic 35.0%
AAAAGCTTCTTTCCCTATAC+TGG - tig0023272:70327-70346 Msa1407160:intron 35.0%
AAAGCTTCTTTCCCTATACT+GGG - tig0023272:70328-70347 Msa1407160:intron 35.0%
TATCCTGAAATCCTCTATTG+GGG - tig0023272:70382-70401 Msa1407160:intron 35.0%
TCTATTGCTTCAGCTAATAG+CGG - tig0023272:70465-70484 Msa1407160:intron 35.0%
ATAATAGCCTCCTACTAATC+CGG + tig0023272:70524-70543 None:intergenic 35.0%
CAAAGAGAAGAAAAACACGA+TGG + tig0023272:70732-70751 None:intergenic 35.0%
! CATCGTGTTTTTCTTCTCTT+TGG - tig0023272:70730-70749 Msa1407160:intron 35.0%
! TCGTGTTTTTCTTCTCTTTG+GGG - tig0023272:70732-70751 Msa1407160:intron 35.0%
!! TCTTTCTAAGATCACTTCCT+TGG - tig0023272:70771-70790 Msa1407160:intron 35.0%
AAGGCTCATTTGTATATCCA+AGG + tig0023272:70791-70810 None:intergenic 35.0%
! TATACAAATGAGCCTTTTCC+TGG - tig0023272:70795-70814 Msa1407160:intron 35.0%
AAATTTAGACAAGCGCCATA+AGG - tig0023272:70869-70888 Msa1407160:intron 35.0%
AGCTTCTCATGCATATAACT+TGG - tig0023272:70999-71018 Msa1407160:CDS 35.0%
AAGGTTTACTCTCTATTGCT+TGG - tig0023272:71038-71057 Msa1407160:CDS 35.0%
AGGTTTACTCTCTATTGCTT+GGG - tig0023272:71039-71058 Msa1407160:CDS 35.0%
TGATACAAAAAACCAAGCAC+TGG - tig0023272:71097-71116 Msa1407160:CDS 35.0%
CTCCAAATCCTAATTACACA+AGG - tig0023272:71146-71165 Msa1407160:CDS 35.0%
!!! CTTGGTTTTGACATTTTGCT+CGG + tig0023272:71513-71532 None:intergenic 35.0%
AGCAAAATGTCAAAACCAAG+AGG - tig0023272:71513-71532 Msa1407160:CDS 35.0%
! ACCCTCCTTTTTCTTTATCA+TGG + tig0023272:71618-71637 None:intergenic 35.0%
! TAACCTTGATAGTATCTTCC+AGG - tig0023272:71639-71658 Msa1407160:CDS 35.0%
!! TGTTAGTCTTGGTTAGTGTA+TGG + tig0023272:71674-71693 None:intergenic 35.0%
TATCATGTGGGACTAGATTA+TGG - tig0023272:71736-71755 Msa1407160:CDS 35.0%
CTATTTAATGTTGCAGCGTA+TGG - tig0023272:71816-71835 Msa1407160:CDS 35.0%
!! CTGCTACACTTTGATTTGTT+GGG - tig0023272:71856-71875 Msa1407160:CDS 35.0%
GCTTGAAAAAAGACCTAGAA+AGG - tig0023272:71909-71928 Msa1407160:CDS 35.0%
AAATGTTCAGGAAAAGAAGC+TGG - tig0023272:71977-71996 Msa1407160:CDS 35.0%
! CATATCAAAGTTCCTTTTGC+AGG - tig0023272:72015-72034 Msa1407160:intron 35.0%
TTGAATTGACACAGGACTAT+CGG - tig0023272:72101-72120 Msa1407160:intron 35.0%
CATGAAGACAAGATTTGTGA+CGG - tig0023272:72411-72430 Msa1407160:CDS 35.0%
! TGTTGTTATAGTGGAATGGC+GGG - tig0023272:69101-69120 Msa1407160:CDS 40.0%
GGGGAAGAAGATGGAATAAT+GGG - tig0023272:69122-69141 Msa1407160:CDS 40.0%
! GAAGAAGATGGAATAATGGG+TGG - tig0023272:69125-69144 Msa1407160:CDS 40.0%
GAGTTCTTCAACCAAGTAGT+TGG - tig0023272:69177-69196 Msa1407160:CDS 40.0%
GCAATAACAGTAACACGTTC+GGG - tig0023272:69227-69246 Msa1407160:CDS 40.0%
! GTTGGCGTAATTCTTGTTTG+AGG + tig0023272:69270-69289 None:intergenic 40.0%
GCCAACTTCACAACTACTAA+TGG - tig0023272:69284-69303 Msa1407160:CDS 40.0%
AGATAGAGAAGGAGAAGTTG+AGG - tig0023272:69340-69359 Msa1407160:CDS 40.0%
CGTCTTCTTCTTCTTCTGAA+TGG - tig0023272:69372-69391 Msa1407160:CDS 40.0%
!! ATTCGTGATTTGTTGTGGGA+TGG - tig0023272:69579-69598 Msa1407160:CDS 40.0%
!! TTCGTGATTTGTTGTGGGAT+GGG - tig0023272:69580-69599 Msa1407160:CDS 40.0%
AAGCGCCTATTCAAGAAACA+TGG - tig0023272:69634-69653 Msa1407160:intron 40.0%
! GTAATACTTGTTCCCGCTTT+TGG - tig0023272:69663-69682 Msa1407160:CDS 40.0%
AACAAGAAGACCTCCAAAAG+CGG + tig0023272:69679-69698 None:intergenic 40.0%
GGGAATTGGAATTGGAAAGA+AGG + tig0023272:69713-69732 None:intergenic 40.0%
! AATAGCCTTTAAGAAAGGGC+GGG + tig0023272:69733-69752 None:intergenic 40.0%
! CAATAGCCTTTAAGAAAGGG+CGG + tig0023272:69734-69753 None:intergenic 40.0%
! GCTGCAATAGCCTTTAAGAA+AGG + tig0023272:69738-69757 None:intergenic 40.0%
GCTTCTATTACTTTAGGCAC+TGG - tig0023272:69756-69775 Msa1407160:intron 40.0%
!! TTTAGGCACTGGTAATTCCT+TGG - tig0023272:69767-69786 Msa1407160:intron 40.0%
!! TTAGGCACTGGTAATTCCTT+GGG - tig0023272:69768-69787 Msa1407160:intron 40.0%
!! CAGTGGAAGTAGTATTGGTA+AGG + tig0023272:70001-70020 None:intergenic 40.0%
GACAGCACTTAGAATAACAG+TGG + tig0023272:70018-70037 None:intergenic 40.0%
!! GCTTCTGTCATTTCTGAGAT+TGG - tig0023272:70041-70060 Msa1407160:intron 40.0%
CTCCCGCTGTATTTATTGTT+GGG - tig0023272:70211-70230 Msa1407160:intron 40.0%
AAGATAGGGTCAATGAAACG+AGG + tig0023272:70249-70268 None:intergenic 40.0%
TCGTTTCATTGACCCTATCT+TGG - tig0023272:70248-70267 Msa1407160:intron 40.0%
CAGATAAACCTCCCAGTATA+GGG + tig0023272:70342-70361 None:intergenic 40.0%
ACAGATAAACCTCCCAGTAT+AGG + tig0023272:70343-70362 None:intergenic 40.0%
ATACTGGGAGGTTTATCTGT+AGG - tig0023272:70343-70362 Msa1407160:intron 40.0%
CAGGATATAGCAATGCTATG+AGG + tig0023272:70369-70388 None:intergenic 40.0%
AAACCCCAATAGAGGATTTC+AGG + tig0023272:70388-70407 None:intergenic 40.0%
CATTCTCAAAACCCCAATAG+AGG + tig0023272:70396-70415 None:intergenic 40.0%
TATGCCCCATCTCTCTTTAT+TGG - tig0023272:70541-70560 Msa1407160:intron 40.0%
ACCACCAATAAAGAGAGATG+GGG + tig0023272:70548-70567 None:intergenic 40.0%
CACCACCAATAAAGAGAGAT+GGG + tig0023272:70549-70568 None:intergenic 40.0%
AACAGAGAGAGGTTAATCAC+AGG + tig0023272:70625-70644 None:intergenic 40.0%
TGTGATTAACCTCTCTCTGT+TGG - tig0023272:70624-70643 Msa1407160:intron 40.0%
TTGCATCACCACAAGCTTAT+GGG - tig0023272:70650-70669 Msa1407160:intron 40.0%
!! TGTTTTTCTTCTCTTTGGGG+TGG - tig0023272:70735-70754 Msa1407160:intron 40.0%
!!! GTTTTTCTTCTCTTTGGGGT+GGG - tig0023272:70736-70755 Msa1407160:intron 40.0%
TATAGGAATCCTCCAGGAAA+AGG + tig0023272:70810-70829 None:intergenic 40.0%
TGCAAATATAGGAATCCTCC+AGG + tig0023272:70816-70835 None:intergenic 40.0%
!! GTATCAAGTTTTATCGTGGG+TGG + tig0023272:71322-71341 None:intergenic 40.0%
!!! AGCACTAGTTTTGTCTCAGT+TGG + tig0023272:71386-71405 None:intergenic 40.0%
TACATCAGCCAAAGCTTAAC+TGG - tig0023272:71470-71489 Msa1407160:intron 40.0%
! GCTTTAAACTTCTGTCCTCT+TGG + tig0023272:71531-71550 None:intergenic 40.0%
TATCATGGAAGATGCTCTCA+AGG + tig0023272:71603-71622 None:intergenic 40.0%
CATCCTGGAAGATACTATCA+AGG + tig0023272:71645-71664 None:intergenic 40.0%
AGTGTATGGTTTCTTCATCC+TGG + tig0023272:71660-71679 None:intergenic 40.0%
!! GCTGCTACACTTTGATTTGT+TGG - tig0023272:71855-71874 Msa1407160:CDS 40.0%
TTCAGTCTCTAACCCTTTCT+AGG + tig0023272:71925-71944 None:intergenic 40.0%
! TCAAAGTTCCTTTTGCAGGT+TGG - tig0023272:72019-72038 Msa1407160:intron 40.0%
GCTTCTGTTTGAATTGACAC+AGG - tig0023272:72093-72112 Msa1407160:intron 40.0%
!! CGGATTGTTTTACCACTACT+TGG - tig0023272:72121-72140 Msa1407160:CDS 40.0%
TCATCTGTACAGACAAAGAG+AGG - tig0023272:72169-72188 Msa1407160:CDS 40.0%
AGACAAAGAGAGGTGATGAA+AGG - tig0023272:72179-72198 Msa1407160:CDS 40.0%
GACAAAGAGAGGTGATGAAA+GGG - tig0023272:72180-72199 Msa1407160:CDS 40.0%
CGTCACAAATCTTGTCTTCA+TGG + tig0023272:72413-72432 None:intergenic 40.0%
CATTCGAGCGTTTGGAAAAT+CGG - tig0023272:72549-72568 Msa1407160:five_prime_UTR 40.0%
TTTGGAAAATCGGCAAAGTC+TGG - tig0023272:72559-72578 Msa1407160:five_prime_UTR 40.0%
! GTTGTTATAGTGGAATGGCG+GGG - tig0023272:69102-69121 Msa1407160:CDS 45.0%
! TTGTTATAGTGGAATGGCGG+GGG - tig0023272:69103-69122 Msa1407160:CDS 45.0%
GGGGGAAGAAGATGGAATAA+TGG - tig0023272:69121-69140 Msa1407160:CDS 45.0%
!! GATGGAATAATGGGTGGCTT+AGG - tig0023272:69131-69150 Msa1407160:CDS 45.0%
AGAGAAGGAGAAGTTGAGGA+AGG - tig0023272:69344-69363 Msa1407160:CDS 45.0%
!! TGCTTGGTTGGTCTCTTAAC+AGG - tig0023272:69422-69441 Msa1407160:CDS 45.0%
! TTTGTTGTGGGATGGGATTC+CGG - tig0023272:69587-69606 Msa1407160:CDS 45.0%
!! ATACTTGTTCCCGCTTTTGG+AGG - tig0023272:69666-69685 Msa1407160:CDS 45.0%
ACAAGAAGACCTCCAAAAGC+GGG + tig0023272:69678-69697 None:intergenic 45.0%
! CTTTAAGAAAGGGCGGGAAT+TGG + tig0023272:69727-69746 None:intergenic 45.0%
CAATTCCCGCCCTTTCTTAA+AGG - tig0023272:69725-69744 Msa1407160:CDS 45.0%
GAATTTCCAATGTCGACGCT+GGG + tig0023272:69804-69823 None:intergenic 45.0%
GGAAGCAATCCATTTGGCAA+TGG + tig0023272:69826-69845 None:intergenic 45.0%
AGGAGTGGAAGCAATCCATT+TGG + tig0023272:69832-69851 None:intergenic 45.0%
AGTTTGGCGGAAGTGAAAAG+AGG + tig0023272:69852-69871 None:intergenic 45.0%
AGCGAAGAAACAACCAGCAA+CGG + tig0023272:69931-69950 None:intergenic 45.0%
!! GTCATTTCTGAGATTGGCCT+CGG - tig0023272:70047-70066 Msa1407160:intron 45.0%
! TAGTCTGGAACTTGAAAGGC+AGG + tig0023272:70080-70099 None:intergenic 45.0%
! GTCGTAGTCTGGAACTTGAA+AGG + tig0023272:70084-70103 None:intergenic 45.0%
TCGGTAAGTTACTTACCAGC+AGG + tig0023272:70116-70135 None:intergenic 45.0%
GCTCCCGCTGTATTTATTGT+TGG - tig0023272:70210-70229 Msa1407160:intron 45.0%
GAATCTCGACCCTTTGTCAA+AGG - tig0023272:70430-70449 Msa1407160:intron 45.0%
GTGGAGAGACCTTTGACAAA+GGG + tig0023272:70442-70461 None:intergenic 45.0%
CTTTGTCAAAGGTCTCTCCA+CGG - tig0023272:70441-70460 Msa1407160:intron 45.0%
TAGCTGAAGCAATAGATCCG+TGG + tig0023272:70461-70480 None:intergenic 45.0%
GCACCACCAATAAAGAGAGA+TGG + tig0023272:70550-70569 None:intergenic 45.0%
!! CTCTTTATTGGTGGTGCAAC+TGG - tig0023272:70553-70572 Msa1407160:intron 45.0%
!! TATTGGTGGTGCAACTGGTA+TGG - tig0023272:70558-70577 Msa1407160:intron 45.0%
ATGCAACTTCCAACAGAGAG+AGG + tig0023272:70636-70655 None:intergenic 45.0%
GTTGCATCACCACAAGCTTA+TGG - tig0023272:70649-70668 Msa1407160:intron 45.0%
! ACAAATGAGCCTTTTCCTGG+AGG - tig0023272:70798-70817 Msa1407160:intron 45.0%
TTGCCAGTTGTCGTGAAAGT+CGG + tig0023272:71420-71439 None:intergenic 45.0%
TCAGCCAAAGCTTAACTGGA+AGG - tig0023272:71474-71493 Msa1407160:CDS 45.0%
GACACCTTCCAGTTAAGCTT+TGG + tig0023272:71481-71500 None:intergenic 45.0%
TATGGTCCAAGCAACTTCCT+TGG - tig0023272:71754-71773 Msa1407160:CDS 45.0%
TTTGAACTCTGAACTGGCCA+AGG + tig0023272:71774-71793 None:intergenic 45.0%
!! GTTCCTTTTGCAGGTTGGAA+TGG - tig0023272:72024-72043 Msa1407160:intron 45.0%
GAACTGCAGTAAGTGGTACT+TGG + tig0023272:72072-72091 None:intergenic 45.0%
AGAAGCAGAACTGCAGTAAG+TGG + tig0023272:72079-72098 None:intergenic 45.0%
TTACCACTACTTGGAGCAGT+AGG - tig0023272:72130-72149 Msa1407160:CDS 45.0%
ACTGGTAATACCTCTGCTGA+AGG - tig0023272:72283-72302 Msa1407160:CDS 45.0%
ATATGACACACCTTCAGCAG+AGG + tig0023272:72296-72315 None:intergenic 45.0%
GGAGAGTTCAAGTAGTGTAG+AGG - tig0023272:72336-72355 Msa1407160:CDS 45.0%
GTCTGGAAGCGAAAATCGAA+AGG - tig0023272:72576-72595 Msa1407160:five_prime_UTR 45.0%
!!! CTTTTATTTATTTATTTATT+TGG - tig0023272:70686-70705 Msa1407160:intron 5.0%
AATGGGTGGCTTAGGATGTG+CGG - tig0023272:69139-69158 Msa1407160:CDS 50.0%
TTAGGATGTGCGGTTGGAGT+CGG - tig0023272:69149-69168 Msa1407160:CDS 50.0%
! AACCATGAGGCACCTCTATC+CGG + tig0023272:69609-69628 None:intergenic 50.0%
GAAAGGGCGGGAATTGGAAT+TGG + tig0023272:69721-69740 None:intergenic 50.0%
TGGTAATTCCTTGGGTCCTG+AGG - tig0023272:69776-69795 Msa1407160:intron 50.0%
GGTAATTCCTTGGGTCCTGA+GGG - tig0023272:69777-69796 Msa1407160:intron 50.0%
GGAATTTCCAATGTCGACGC+TGG + tig0023272:69805-69824 None:intergenic 50.0%
ATTGAAACCAGCAGAGAGGC+CGG + tig0023272:69904-69923 None:intergenic 50.0%
! CAGCATTGAAACCAGCAGAG+AGG + tig0023272:69908-69927 None:intergenic 50.0%
TCGCTGTTGAGTCTGTCTTG+TGG - tig0023272:69946-69965 Msa1407160:intron 50.0%
GGAGAACGAAAGTCGTAGTC+TGG + tig0023272:70095-70114 None:intergenic 50.0%
TACGACTTTCGTTCTCCTGC+TGG - tig0023272:70098-70117 Msa1407160:intron 50.0%
GACAATCTTCACAAGGCCAC+TGG - tig0023272:70298-70317 Msa1407160:intron 50.0%
! AGAAGCTTTTGGCATGCCAG+TGG + tig0023272:70317-70336 None:intergenic 50.0%
GCTTCTTTCCCTATACTGGG+AGG - tig0023272:70331-70350 Msa1407160:intron 50.0%
CGTGGAGAGACCTTTGACAA+AGG + tig0023272:70443-70462 None:intergenic 50.0%
ACTTCTCTCTGTCGTGCTTC+CGG - tig0023272:70502-70521 Msa1407160:intron 50.0%
!! TGTCGTGCTTCCGGATTAGT+AGG - tig0023272:70511-70530 Msa1407160:intron 50.0%
GCCCCATCTCTCTTTATTGG+TGG - tig0023272:70544-70563 Msa1407160:intron 50.0%
GGTGCAACTGGTATGGCTTA+TGG - tig0023272:70565-70584 Msa1407160:intron 50.0%
ATCACCACAAGCTTATGGGC+TGG - tig0023272:70654-70673 Msa1407160:intron 50.0%
! CAACCGACTTTCACGACAAC+TGG - tig0023272:71414-71433 Msa1407160:intron 50.0%
AACTGGCCAAGGAAGTTGCT+TGG + tig0023272:71763-71782 None:intergenic 50.0%
CAGCGTATGGTTGTCTATGC+TGG - tig0023272:71829-71848 Msa1407160:CDS 50.0%
TTCAGGAAAAGAAGCTGGCG+TGG - tig0023272:71982-72001 Msa1407160:CDS 50.0%
CAGCCATTCCAACCTGCAAA+AGG + tig0023272:72030-72049 None:intergenic 50.0%
AAGCCTACTGCTCCAAGTAG+TGG + tig0023272:72136-72155 None:intergenic 50.0%
GAGCAGTAGGCTTGTCTTCA+TGG - tig0023272:72143-72162 Msa1407160:CDS 50.0%
CTTGGAGACATTCGAGCGTT+TGG - tig0023272:72541-72560 Msa1407160:five_prime_UTR 50.0%
TGGGATGGGATTCCGGATAG+AGG - tig0023272:69594-69613 Msa1407160:intron 55.0%
!! TTCCGGATAGAGGTGCCTCA+TGG - tig0023272:69604-69623 Msa1407160:intron 55.0%
AGGCGCTTCTCTCAACCATG+AGG + tig0023272:69622-69641 None:intergenic 55.0%
GGCGGAAGTGAAAAGAGGAG+TGG + tig0023272:69847-69866 None:intergenic 55.0%
GGTTTCAATGCTGCCGTTGC+TGG - tig0023272:69915-69934 Msa1407160:intron 55.0%
!! CGTGCTTCCGGATTAGTAGG+AGG - tig0023272:70514-70533 Msa1407160:intron 55.0%
CGTACCAGCCCATAAGCTTG+TGG + tig0023272:70661-70680 None:intergenic 55.0%
GAAAAGAAGCTGGCGTGGCA+CGG - tig0023272:71987-72006 Msa1407160:CDS 55.0%
! GGAATGGCGGGGGAAGAAGA+TGG - tig0023272:69113-69132 Msa1407160:CDS 60.0%
GGTGGCTTAGGATGTGCGGT+TGG - tig0023272:69143-69162 Msa1407160:CDS 60.0%
TCGGAGGGGAAGGAGTTTGG+CGG + tig0023272:69865-69884 None:intergenic 60.0%
AGCTCGGAGGGGAAGGAGTT+TGG + tig0023272:69868-69887 None:intergenic 60.0%
AGCAGATCCAGCAGCTCGGA+GGG + tig0023272:69880-69899 None:intergenic 60.0%
GAAAGGCAGGTTCAGAGCCG+AGG + tig0023272:70067-70086 None:intergenic 60.0%
GGAATGGCTGCGACTCTTGC+AGG - tig0023272:72040-72059 Msa1407160:intron 60.0%
ATGTCGACGCTGGGACCCTC+AGG + tig0023272:69795-69814 None:intergenic 65.0%
!! GAGGGTCCCAGCGTCGACAT+TGG - tig0023272:69795-69814 Msa1407160:intron 65.0%
ATCCAGCAGCTCGGAGGGGA+AGG + tig0023272:69875-69894 None:intergenic 65.0%
GCAGATCCAGCAGCTCGGAG+GGG + tig0023272:69879-69898 None:intergenic 65.0%
CAGCAGATCCAGCAGCTCGG+AGG + tig0023272:69881-69900 None:intergenic 65.0%
CGGCAGCAGATCCAGCAGCT+CGG + tig0023272:69884-69903 None:intergenic 65.0%
CGAGCTGCTGGATCTGCTGC+CGG - tig0023272:69882-69901 Msa1407160:intron 65.0%
GCTGGGACCCTCAGGACCCA+AGG + tig0023272:69787-69806 None:intergenic 70.0%
CTCCTTCCCCTCCGAGCTGC+TGG - tig0023272:69870-69889 Msa1407160:intron 70.0%
TCTGCTGCCGGCCTCTCTGC+TGG - tig0023272:69894-69913 Msa1407160:intron 70.0%
Chromosome Type Strat End Strand Name
tig0023272 gene 68969 72624 68969 ID=Msa1407160;Name=Msa1407160
tig0023272 mRNA 68969 72624 68969 ID=Msa1407160-mRNA-1;Parent=Msa1407160;Name=Msa1407160-mRNA-1;_AED=0.17;_eAED=0.21;_QI=123|0.5|0.6|1|1|1|5|0|711
tig0023272 exon 68969 69606 68969 ID=Msa1407160-mRNA-1:exon:24964;Parent=Msa1407160-mRNA-1
tig0023272 exon 69662 69761 69662 ID=Msa1407160-mRNA-1:exon:24963;Parent=Msa1407160-mRNA-1
tig0023272 exon 70918 71384 70918 ID=Msa1407160-mRNA-1:exon:24962;Parent=Msa1407160-mRNA-1
tig0023272 exon 71474 72023 71474 ID=Msa1407160-mRNA-1:exon:24961;Parent=Msa1407160-mRNA-1
tig0023272 exon 72121 72624 72121 ID=Msa1407160-mRNA-1:exon:24960;Parent=Msa1407160-mRNA-1
tig0023272 five_prime_UTR 72502 72624 72502 ID=Msa1407160-mRNA-1:five_prime_utr;Parent=Msa1407160-mRNA-1
tig0023272 CDS 72121 72501 72121 ID=Msa1407160-mRNA-1:cds;Parent=Msa1407160-mRNA-1
tig0023272 CDS 71474 72023 71474 ID=Msa1407160-mRNA-1:cds;Parent=Msa1407160-mRNA-1
tig0023272 CDS 70918 71384 70918 ID=Msa1407160-mRNA-1:cds;Parent=Msa1407160-mRNA-1
tig0023272 CDS 69662 69761 69662 ID=Msa1407160-mRNA-1:cds;Parent=Msa1407160-mRNA-1
tig0023272 CDS 68969 69606 68969 ID=Msa1407160-mRNA-1:cds;Parent=Msa1407160-mRNA-1
Gene Sequence

>Msa1407160

ATGAGTTGTTGTTGTTATAGTGGAATGGCGGGGGAAGAAGATGGAATAATGGGTGGCTTAGGATGTGCGGTTGGAGTCGGAGTGAGAGTTCTTCAACCAAGTAGTTGGCATTATCATCATCATCATCATCTAGCTGCAATAACAGTAACACGTTCGGGATTCCTTTCTTCTTCTTCCTCAAACAAGAATTACGCCAACTTCACAACTACTAATGGTCGGTGTCGTCGTGTGCCGCTTCACAATAGCAAAGATAGAGAAGGAGAAGTTGAGGAAGGAGTTTCGTCTTCTTCTTCTTCTGAATGGATTCGTAATTCGGGAATAATATCTTCATGCTTGGTTGGTCTCTTAACAGGTGTTGCAGTCGTGCTCTTCAACAATGTTGTTCATGAAATTCGTGATTTGTTGTGGGATGGGATTCCGGATAGAGGTGCCTCATGGTTGAGAGAAGCGCCTATTCAAGAAACATGGAAAAGGGTAATACTTGTTCCCGCTTTTGGAGGTCTTCTTGTTTCTCTTCTCAACCTTCTTTCCAATTCCAATTCCCGCCCTTTCTTAAAGGCTATTGCAGCTTCTATTACTTTAGGCACTGGTAATTCCTTGGGTCCTGAGGGTCCCAGCGTCGACATTGGAAATTCCATTGCCAAATGGATTGCTTCCACTCCTCTTTTCACTTCCGCCAAACTCCTTCCCCTCCGAGCTGCTGGATCTGCTGCCGGCCTCTCTGCTGGTTTCAATGCTGCCGTTGCTGGTTGTTTCTTCGCTGTTGAGTCTGTCTTGTGGCCTTCTGATTCTGATTCTTCTAATTTATCCCTTACCAATACTACTTCCACTGTTATTCTAAGTGCTGTCATTGCTTCTGTCATTTCTGAGATTGGCCTCGGCTCTGAACCTGCCTTTCAAGTTCCAGACTACGACTTTCGTTCTCCTGCTGAGCTCCCGCTGTATTTATTGTTGGGTATCTTATGTGGCCTCGTTTCATTGACCCTATCTTGGTCTACATCATATATGCTCACTTTATTTGACAATCTTCACAAGGCCACTGGCATGCCAAAAGCTTCTTTCCCTATACTGGGAGGTTTATCTGTAGGCCTCATAGCATTGCTATATCCTGAAATCCTCTATTGGGGTTTTGAGAATGTTGACATTTTGTTAGAATCTCGACCCTTTGTCAAAGGTCTCTCCACGGATCTATTGCTTCAGCTAATAGCGGTCAAGATAGTTACAACTTCTCTCTGTCGTGCTTCCGGATTAGTAGGAGGCTATTATGCCCCATCTCTCTTTATTGGTGGTGCAACTGGTATGGCTTATGGAAAATTAATTGCTTTCGCTGTTGCTCACTCTAATCCTGTGATTAACCTCTCTCTGTTGGAAGTTGCATCACCACAAGCTTATGGGCTGCGTATGGTTGTCTATGCTGGAATGCTGCTACACTTTGATTTGTTGGGTCAGAATAAGACTTGTAAGAATATGTTTCAGCTTGAAAAAAGACCTAGAAAGGGAAAAGAAGCTGGCGTGGCACGGATGATCATATCAAAGTTCCTTTTGCAGGTTGGAATGGCTGCGACTCTTGCAGGTGTTTGCCAAGTACCACTTACTGCAGTTCTGCTTCTGTTTGAATTGACACAGGACTATCGGATTGTTTTACCACTACTTGGAGCAGTAGGCTTGTCTTCATGGATTTCATCTGTACAGACAAAGAGAGGTGATGAAAGGGATAAAGAAAAGCTGAAGATACAAAACTCAAATTCTTCTCCGTTTCCAGAAATATCTTCTTGTAGATCAATTGAGTTATCTACTGGTAATACCTCTGCTGAAGGTGTGTCATATTTGAGTAAATCATGTCAAGTGGAGAGTTCAAGTAGTGTAGAGGATAATAATGATGAAACAATGAATTATGTAAGGAGAACATTAGTTTCGGAAGCCATGAAGACAAGATTTGTGACGGTTTCAATGTGCACACCGCTTACTAAAGTAATAGATCTCATGCTCGCAGAGAAACAGTCTTGTGCAGTAATTGTTGATACTGATGATACTTTGATTGGTTTATTGACACTTGGAGACATTCGAGCGTTTGGAAAATCGGCAAAGTCTGGAAGCGAAAATCGAAAGGTACAAGAAATTTTAATCTCAGTTTGA

Protein sequence

>Msa1407160

MSCCCYSGMAGEEDGIMGGLGCAVGVGVRVLQPSSWHYHHHHHLAAITVTRSGFLSSSSSNKNYANFTTTNGRCRRVPLHNSKDREGEVEEGVSSSSSSEWIRNSGIISSCLVGLLTGVAVVLFNNVVHEIRDLLWDGIPDRGASWLREAPIQETWKRVILVPAFGGLLVSLLNLLSNSNSRPFLKAIAASITLGTGNSLGPEGPSVDIGNSIAKWIASTPLFTSAKLLPLRAAGSAAGLSAGFNAAVAGCFFAVESVLWPSDSDSSNLSLTNTTSTVILSAVIASVISEIGLGSEPAFQVPDYDFRSPAELPLYLLLGILCGLVSLTLSWSTSYMLTLFDNLHKATGMPKASFPILGGLSVGLIALLYPEILYWGFENVDILLESRPFVKGLSTDLLLQLIAVKIVTTSLCRASGLVGGYYAPSLFIGGATGMAYGKLIAFAVAHSNPVINLSLLEVASPQAYGLRMVVYAGMLLHFDLLGQNKTCKNMFQLEKRPRKGKEAGVARMIISKFLLQVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGLSSWISSVQTKRGDERDKEKLKIQNSNSSPFPEISSCRSIELSTGNTSAEGVSYLSKSCQVESSSSVEDNNDETMNYVRRTLVSEAMKTRFVTVSMCTPLTKVIDLMLAEKQSCAVIVDTDDTLIGLLTLGDIRAFGKSAKSGSENRKVQEILISV*