AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0612090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0612090 MtrunA17_Chr5g0406961 99.746 393 1 0 1 393 52 444 0.0 817
Msa0612090 MtrunA17_Chr4g0045661 98.728 393 5 0 1 393 1 393 0.0 805
Msa0612090 MtrunA17_Chr1g0159321 72.271 339 90 2 59 393 52 390 0.0 526
Msa0612090 MtrunA17_Chr3g0126011 64.489 352 113 4 46 393 23 366 5.10e-169 477
Msa0612090 MtrunA17_Chr3g0125781 65.782 339 113 2 57 393 32 369 1.67e-168 476
Msa0612090 MtrunA17_Chr3g0125991 64.000 350 118 3 46 393 23 366 1.79e-166 470
Msa0612090 MtrunA17_Chr3g0125981 65.970 335 111 2 59 391 35 368 5.23e-165 467
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0612090 AT2G43710.1 80.549 401 70 3 1 393 1 401 0.0 673
Msa0612090 AT2G43710.2 80.299 401 71 3 1 393 1 401 0.0 672
Msa0612090 AT3G02630.1 77.041 392 89 1 1 391 3 394 0.0 642
Msa0612090 AT5G16240.1 77.778 360 77 2 33 391 35 392 0.0 597
Msa0612090 AT3G02610.2 67.082 401 124 4 1 393 13 413 0.0 550
Msa0612090 AT3G02610.1 67.082 401 124 4 1 393 11 411 0.0 550
Msa0612090 AT3G02620.1 65.664 399 125 4 1 393 11 403 0.0 538
Msa0612090 AT3G02620.2 65.664 399 125 4 1 393 14 406 0.0 538
Msa0612090 AT5G16230.1 67.895 380 118 3 18 393 22 401 0.0 537
Msa0612090 AT1G43800.1 65.104 384 127 4 13 391 8 389 0.0 517
Msa0612090 AT5G16230.2 74.154 325 80 3 73 393 1 325 4.43e-180 503
Msa0612090 AT3G02620.3 73.394 327 81 3 73 393 1 327 5.41e-179 501

Find 163 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATCAAAATTGCCTTTAA+AGG 0.133216 4_2:-60484485 None:intergenic
TGCTGATATACTTGAGTTTC+TGG 0.154020 4_2:+60484013 Msa0612090:CDS
GAAGAAGAAGAAGATGAATT+TGG 0.156254 4_2:-60481498 None:intergenic
GCCCTACTCCTTGGGCTATT+TGG 0.176215 4_2:+60483198 Msa0612090:CDS
TCCTCCAGCCTTCTGATTCT+TGG 0.181095 4_2:-60484116 None:intergenic
GATAAAGAAAATTTAATTAA+TGG 0.183957 4_2:+60484440 Msa0612090:three_prime_UTR
AACACTTCTCTACAGGTTTA+AGG 0.197232 4_2:-60482977 None:intergenic
GGTGGAAGCCATGACGAATT+TGG 0.227957 4_2:-60481611 None:intergenic
TACTTGGACATGCACTTCTC+TGG 0.253027 4_2:-60482877 None:intergenic
GCCGACATAACCGGACTTTC+AGG 0.282345 4_2:+60484053 Msa0612090:CDS
ATAGGCTACATTGGTATATT+AGG 0.295683 4_2:+60484599 Msa0612090:three_prime_UTR
GTGTGTGAAAAGTCCTTTAA+AGG 0.298067 4_2:+60484472 Msa0612090:three_prime_UTR
TTTGTTGCTTGTAGCTTCAT+TGG 0.306270 4_2:+60484575 Msa0612090:three_prime_UTR
CATTCAGTTGGATTCATGAT+AGG 0.310680 4_2:+60484177 Msa0612090:CDS
CCAAACTATGCTTAATACTT+TGG 0.323055 4_2:+60483148 Msa0612090:CDS
GTACTACTCTAAGCATATTA+AGG 0.323956 4_2:+60484203 Msa0612090:exon
AGGTTTAAGGTGAGTCAATA+AGG 0.334045 4_2:-60482964 None:intergenic
AAGAAGAAGAAGATGAATTT+GGG 0.337900 4_2:-60481497 None:intergenic
AGATGATTACTTTGTTGTTC+TGG 0.344575 4_2:+60483088 Msa0612090:CDS
TTAAGCATAGTTTGGTAAGT+AGG 0.345744 4_2:-60483140 None:intergenic
TTTCAAATCGTTGGAGGGTT+GGG 0.350638 4_2:+60482932 Msa0612090:CDS
CCAAAGTATTAAGCATAGTT+TGG 0.352890 4_2:-60483148 None:intergenic
AATCCAACTGAATGCAAGTT+TGG 0.355409 4_2:-60484168 None:intergenic
TTCCTTCTCTCTCCCTCAAA+TGG 0.373909 4_2:+60481573 Msa0612090:CDS
GTGGAAGCCATGACGAATTT+GGG 0.375597 4_2:-60481610 None:intergenic
TGTTGTTCTGGTTGGAGATA+TGG 0.377751 4_2:+60483100 Msa0612090:CDS
GCTTGTAGCTTCATTGGAAT+AGG 0.383035 4_2:+60484581 Msa0612090:three_prime_UTR
CTGGTGCCAGCCCTACTCCT+TGG 0.386884 4_2:+60483189 Msa0612090:CDS
AATCTTCCAGCAACTCTACT+TGG 0.387112 4_2:+60484235 Msa0612090:three_prime_UTR
TCTGTTAAGCATAAGCAATC+AGG 0.396112 4_2:+60484327 Msa0612090:three_prime_UTR
AAAGATAGTGGAAAAGCTAT+TGG 0.403395 4_2:+60483833 Msa0612090:CDS
ATTGCTCCAAGTAGAGTTGC+TGG 0.409276 4_2:-60484241 None:intergenic
CTGCCCGATCCTTCCTCAGA+TGG 0.416238 4_2:+60483017 Msa0612090:CDS
ATGGCTTCCACCCTCCGTTC+TGG 0.424747 4_2:+60481622 Msa0612090:CDS
CATCCAAACTTGCATTCAGT+TGG 0.428488 4_2:+60484165 Msa0612090:CDS
AGAACAACAAAGTAATCATC+TGG 0.438790 4_2:-60483086 None:intergenic
GATATACTTGAGTTTCTGGT+TGG 0.441237 4_2:+60484017 Msa0612090:CDS
TGGAAGGTGGCCGACATAAC+CGG 0.441892 4_2:+60484044 Msa0612090:CDS
GGTTGCCAACACTTCTCTAC+AGG 0.448685 4_2:-60482984 None:intergenic
TGGTGCCAGCCCTACTCCTT+GGG 0.450462 4_2:+60483190 Msa0612090:CDS
TTACCATTCCAGAGCCAATC+AGG 0.453929 4_2:-60483328 None:intergenic
AATAAGTATCTCTACTTGTC+CGG 0.454382 4_2:+60483266 Msa0612090:CDS
TGTGTTTCCATGCGATATAA+AGG 0.456327 4_2:-60483718 None:intergenic
CAGCAGAATAGTTATCAAAC+AGG 0.457192 4_2:-60483953 None:intergenic
TGGCACCAACTCAAGTATTC+CGG 0.458120 4_2:-60484546 None:intergenic
ATATACTTGAGTTTCTGGTT+GGG 0.460993 4_2:+60484018 Msa0612090:CDS
GCCGCGTTCCTTAGCAAGCC+TGG 0.462444 4_2:-60483742 None:intergenic
TCCAGCCTTCTGATTCTTGG+TGG 0.465016 4_2:-60484113 None:intergenic
TCGTCCCTCACCTGAAAGTC+CGG 0.465890 4_2:-60484063 None:intergenic
GATGGAGTTCGTGATGAAAC+TGG 0.466056 4_2:+60483170 Msa0612090:CDS
GAGAAGGAAAATGTTTGTGT+AGG 0.469992 4_2:-60481559 None:intergenic
TCTGCTGTTGCCCAGCGCAT+TGG 0.472536 4_2:+60483969 Msa0612090:CDS
AAAATGTTTGTGTAGGGAAA+GGG 0.472966 4_2:-60481552 None:intergenic
GGAACGCGGCGATTTGAAGT+TGG 0.473114 4_2:+60483755 Msa0612090:CDS
GTTGCTCTGAGAGCCATTGT+TGG 0.474495 4_2:-60481529 None:intergenic
TCCAAATAGCCCAAGGAGTA+GGG 0.477229 4_2:-60483199 None:intergenic
CAGTGTAGACTCCAATGCGC+TGG 0.478141 4_2:-60483980 None:intergenic
GTGTAGATAAAGCCAAGGTA+AGG 0.480370 4_2:-60483675 None:intergenic
GTTTCTGGTTGGGAGGTGGA+AGG 0.480811 4_2:+60484028 Msa0612090:CDS
GAGGCATAGAGTGGGTTACT+TGG 0.483261 4_2:-60482893 None:intergenic
TACTTGAGTTTCTGGTTGGG+AGG 0.483685 4_2:+60484021 Msa0612090:CDS
TATCGCATGGAAACACAGCC+AGG 0.484282 4_2:+60483724 Msa0612090:CDS
GATCTGAGACTGGCCATTTG+AGG 0.486343 4_2:-60481586 None:intergenic
GAAGATGAATTTGGGAATCA+CGG 0.488705 4_2:-60481489 None:intergenic
AGAGGTTGAAAATATTAAGA+AGG 0.489403 4_2:+60482842 Msa0612090:CDS
AAGGCACAGGAGTATGTTTG+TGG 0.492271 4_2:+60484086 Msa0612090:CDS
ATTCAGTACCTGATTGGCTC+TGG 0.492964 4_2:+60483320 Msa0612090:CDS
TTGTGAGGCAGAGGCAAGAA+TGG 0.498270 4_2:-60481400 None:intergenic
ACTTGGACATGCACTTCTCT+GGG 0.498930 4_2:-60482876 None:intergenic
CTCCTTGGGCTATTTGGACA+AGG 0.500836 4_2:+60483204 Msa0612090:CDS
TTATTCTTCATTGCGGTCAC+CGG 0.501935 4_2:+60484527 Msa0612090:three_prime_UTR
CGTCTCGGCCATCATACATC+AGG 0.503492 4_2:-60483926 None:intergenic
AAAGCAATAACTGTTCCATC+AGG 0.503808 4_2:-60483864 None:intergenic
TTGAGTTTCTGGTTGGGAGG+TGG 0.503890 4_2:+60484024 Msa0612090:CDS
AAGACAATTCAGTACCTGAT+TGG 0.503895 4_2:+60483314 Msa0612090:CDS
TATCAAACAGGTTGTCGTCT+CGG 0.505744 4_2:-60483941 None:intergenic
GACTGCTTACACAAAGATAG+TGG 0.506240 4_2:+60483821 Msa0612090:CDS
ATCTGAGACTGGCCATTTGA+GGG 0.507077 4_2:-60481585 None:intergenic
CCATCATACATCAGGTGTGC+TGG 0.507354 4_2:-60483918 None:intergenic
AGAAGGAAAATGTTTGTGTA+GGG 0.508351 4_2:-60481558 None:intergenic
ATTCAGTTGGATTCATGATA+GGG 0.509293 4_2:+60484178 Msa0612090:CDS
ATCGTTGGAGGGTTGGGCTG+AGG 0.511095 4_2:+60482938 Msa0612090:CDS
ACTATGCTTAATACTTTGGA+TGG 0.522020 4_2:+60483152 Msa0612090:CDS
CTGTTAAGCATAAGCAATCA+GGG 0.523483 4_2:+60484328 Msa0612090:three_prime_UTR
CAGAGGCAAGAATGGACAAT+GGG 0.524400 4_2:-60481392 None:intergenic
GGGCTATTTGGACAAGGGCA+TGG 0.524428 4_2:+60483210 Msa0612090:CDS
ACACAAGCACAAGTATTAAG+TGG 0.524760 4_2:+60481360 None:intergenic
CTACACTTCATTTCAAGAGA+GGG 0.526696 4_2:+60483692 Msa0612090:CDS
TTCATTGGAATAGGCTACAT+TGG 0.527622 4_2:+60484590 Msa0612090:three_prime_UTR
AATCCATCTGAGGAAGGATC+GGG 0.533112 4_2:-60483020 None:intergenic
GAAAATGTTTGTGTAGGGAA+AGG 0.539021 4_2:-60481553 None:intergenic
AAATGTTTGTGTAGGGAAAG+GGG 0.540519 4_2:-60481551 None:intergenic
GCCACCAAGAATCAGAAGGC+TGG 0.541195 4_2:+60484112 Msa0612090:CDS
GATTACTTTGTTGTTCTGGT+TGG 0.542691 4_2:+60483092 Msa0612090:CDS
AATAGCCCAAGGAGTAGGGC+TGG 0.546034 4_2:-60483195 None:intergenic
AGGTGAGGGACGAAAGGCAC+AGG 0.547789 4_2:+60484073 Msa0612090:CDS
TTGAAAATTTCAATCTTCTG+CGG 0.547903 4_2:-60482915 None:intergenic
GAATCCATCTGAGGAAGGAT+CGG 0.550340 4_2:-60483021 None:intergenic
ACCTGAAAGTCCGGTTATGT+CGG 0.554587 4_2:-60484054 None:intergenic
CTACAAGCAACAAATTTACA+TGG 0.555806 4_2:-60484566 None:intergenic
GTCCAAATAGCCCAAGGAGT+AGG 0.558680 4_2:-60483200 None:intergenic
TCTGGTTGGGAGGTGGAAGG+TGG 0.560034 4_2:+60484031 Msa0612090:CDS
AGGGCGACCTTTATATCGCA+TGG 0.560815 4_2:+60483711 Msa0612090:CDS
AGAGAAGTGTTGGCAACCAC+AGG 0.562702 4_2:+60482989 Msa0612090:CDS
TTGAAGTTGGCTCAGATCTG+TGG 0.563389 4_2:+60483768 Msa0612090:CDS
GTACCTGATTGGCTCTGGAA+TGG 0.564475 4_2:+60483325 Msa0612090:CDS
AGTGTAGACTCCAATGCGCT+GGG 0.573443 4_2:-60483979 None:intergenic
AAGTGAAGGAACTGAGAGAG+AGG 0.573671 4_2:+60483051 Msa0612090:CDS
AGGCACAGGAGTATGTTTGT+GGG 0.574102 4_2:+60484087 Msa0612090:CDS
AAGTATATCAGCATAGTCCT+TGG 0.575108 4_2:-60484003 None:intergenic
GGCAAGAATGGACAATGGGA+AGG 0.575597 4_2:-60481388 None:intergenic
TCTTCAATCGAATCCAACAA+TGG 0.578340 4_2:+60481516 Msa0612090:exon
TTAAACCTGTAGAGAAGTGT+TGG 0.579690 4_2:+60482979 Msa0612090:CDS
TCTACACTTCATTTCAAGAG+AGG 0.581234 4_2:+60483691 Msa0612090:CDS
GGCTACATTGGTATATTAGG+AGG 0.582606 4_2:+60484602 Msa0612090:three_prime_UTR
TTGTCTCATATCAACACGGC+CGG 0.584046 4_2:-60483285 None:intergenic
CTCATGGCGTTTCTCATCAG+AGG 0.584747 4_2:-60483799 None:intergenic
TTGTCATTTATTCTTCATTG+CGG 0.586963 4_2:+60484520 Msa0612090:three_prime_UTR
GAATTTGGGAGATCTGAGAC+TGG 0.593320 4_2:-60481596 None:intergenic
GAGAGCTTCAGCAAGAGCAA+AGG 0.595934 4_2:+60484139 Msa0612090:CDS
AAACACAGCCAGGCTTGCTA+AGG 0.597013 4_2:+60483734 Msa0612090:CDS
TGTAGATAAAGCCAAGGTAA+GGG 0.598444 4_2:-60483674 None:intergenic
GGCCATTTGAGGGAGAGAGA+AGG 0.598602 4_2:-60481575 None:intergenic
CAGATCTCCCAAATTCGTCA+TGG 0.599540 4_2:+60481603 Msa0612090:CDS
AAAATTTCAATCTTCTGCGG+AGG 0.599563 4_2:-60482912 None:intergenic
TCTTCTGCGGAGGCATAGAG+TGG 0.601306 4_2:-60482902 None:intergenic
AATTTGATGGATAGGATCCT+CGG 0.609645 4_2:+60483640 Msa0612090:intron
ACTTTCAGGTGAGGGACGAA+AGG 0.610348 4_2:+60484067 Msa0612090:CDS
CCAGCACACCTGATGTATGA+TGG 0.611997 4_2:+60483918 Msa0612090:CDS
CTATTGGAGATTGATCCTGA+TGG 0.612852 4_2:+60483849 Msa0612090:CDS
GCCCTTGTCCAAATAGCCCA+AGG 0.616169 4_2:-60483206 None:intergenic
TCCTTGGGCTATTTGGACAA+GGG 0.616511 4_2:+60483205 Msa0612090:CDS
TCTTCGAATCCATCTGAGGA+AGG 0.617698 4_2:-60483026 None:intergenic
GCCAGGCTTGCTAAGGAACG+CGG 0.621905 4_2:+60483741 Msa0612090:CDS
AGTGAAGGAACTGAGAGAGA+GGG 0.623958 4_2:+60483052 Msa0612090:CDS
TGACTTGGAACCAGAACGGA+GGG 0.624622 4_2:-60481632 None:intergenic
GCAAGAATGGACAATGGGAA+GGG 0.626362 4_2:-60481387 None:intergenic
ACTGAGAATAGCCCTTACCT+TGG 0.627826 4_2:+60483663 Msa0612090:CDS
GGTCACCGGAATACTTGAGT+TGG 0.629941 4_2:+60484541 Msa0612090:three_prime_UTR
ATGAAGTGTAGATAAAGCCA+AGG 0.630791 4_2:-60483680 None:intergenic
TTGCTCTTCGAATCCATCTG+AGG 0.631251 4_2:-60483030 None:intergenic
CAATTTGTCTCATATCAACA+CGG 0.633578 4_2:-60483289 None:intergenic
GCAGAGGCAAGAATGGACAA+TGG 0.634949 4_2:-60481393 None:intergenic
TCTTTGTGTAAGCAGTCTCA+TGG 0.635579 4_2:-60483815 None:intergenic
CTTGGAACCAGAACGGAGGG+TGG 0.638218 4_2:-60481629 None:intergenic
TGGATTCGAAGAGCAAGTGA+AGG 0.638840 4_2:+60483037 Msa0612090:CDS
CATTGGAGTCTACACTGCCA+AGG 0.641019 4_2:+60483986 Msa0612090:CDS
ATGACTGTATTGTGAGGCAG+AGG 0.642991 4_2:-60481409 None:intergenic
GGTTGCCACCAAGAATCAGA+AGG 0.645168 4_2:+60484108 Msa0612090:CDS
TAAAACATATCACTACTACA+AGG 0.651295 4_2:-60484382 None:intergenic
TGGACATGCACTTCTCTGGG+AGG 0.657904 4_2:-60482873 None:intergenic
TCACTGACTTGGAACCAGAA+CGG 0.659911 4_2:-60481636 None:intergenic
GAAACAATCGTTCTGTTGCG+TGG 0.663763 4_2:+60484304 Msa0612090:three_prime_UTR
ATAACCGGACTTTCAGGTGA+GGG 0.664241 4_2:+60484059 Msa0612090:CDS
ACCAAGAATCAGAAGGCTGG+AGG 0.675099 4_2:+60484115 Msa0612090:CDS
TAAGGGCTATTCTCAGTCCG+AGG 0.684437 4_2:-60483657 None:intergenic
CATAACCGGACTTTCAGGTG+AGG 0.689606 4_2:+60484058 Msa0612090:CDS
CTTCTGCGGAGGCATAGAGT+GGG 0.692583 4_2:-60482901 None:intergenic
CTGACTTGGAACCAGAACGG+AGG 0.705087 4_2:-60481633 None:intergenic
TGTTAAGCATAAGCAATCAG+GGG 0.708374 4_2:+60484329 Msa0612090:three_prime_UTR
ACAGCTGAAGAAAATAGACA+TGG 0.709949 4_2:+60483233 Msa0612090:CDS
GGATCGGGCAGAAAATCCTG+TGG 0.717346 4_2:-60483005 None:intergenic
ATGTGTATGACTGTATTGTG+AGG 0.739231 4_2:-60481415 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTATAATCAATTATATTTT+TGG + chr4_2:60482235-60482254 Msa0612090:intron 10.0%
!! GATAAAGAAAATTTAATTAA+TGG + chr4_2:60484440-60484459 Msa0612090:three_prime_UTR 10.0%
!!! TATTGAATTAATTTTTCGTT+TGG + chr4_2:60481774-60481793 Msa0612090:intron 15.0%
!! AAAAAACAAAACTAAAACTA+AGG - chr4_2:60482112-60482131 None:intergenic 15.0%
!! AGATTATCATAAAAAAGAAT+CGG - chr4_2:60482518-60482537 None:intergenic 15.0%
!! TGAAAAATAATGAGATAGAA+CGG - chr4_2:60481944-60481963 None:intergenic 20.0%
!! TTAAGAATATTAGAAGATAC+TGG - chr4_2:60482078-60482097 None:intergenic 20.0%
!!! GTTTTTTTGATTGTATTCTA+TGG + chr4_2:60482125-60482144 Msa0612090:intron 20.0%
!!! ATTATATTTTTGGAACTTGT+TGG + chr4_2:60482245-60482264 Msa0612090:intron 20.0%
!!! TTATATTTTTGGAACTTGTT+GGG + chr4_2:60482246-60482265 Msa0612090:intron 20.0%
!!! CTTTTTTATGATAATCTTGT+TGG + chr4_2:60482521-60482540 Msa0612090:intron 20.0%
!! ATATCATCAAAATGACAATT+TGG - chr4_2:60482634-60482653 None:intergenic 20.0%
!! TGAATTGTTAATATTATTCG+TGG - chr4_2:60482684-60482703 None:intergenic 20.0%
!! ATATCATTCATTTCTTTAAC+AGG - chr4_2:60482728-60482747 None:intergenic 20.0%
!!! TGTTTATATCTCTCTAATTT+TGG + chr4_2:60483609-60483628 Msa0612090:intron 20.0%
! AAGAAGAAGAAGATGAATTT+GGG - chr4_2:60481500-60481519 None:intergenic 25.0%
! CTTCGCTATAAATTCAATTT+GGG + chr4_2:60482172-60482191 Msa0612090:intron 25.0%
! TGATGAATGTTTACAGAAAT+TGG + chr4_2:60482337-60482356 Msa0612090:intron 25.0%
! TAAAAAAGAATCGGTAAACA+TGG - chr4_2:60482509-60482528 None:intergenic 25.0%
! TTGATTAACCTATGCATTTA+AGG + chr4_2:60482584-60482603 Msa0612090:intron 25.0%
!!! TCATTTTGATGATATCTACA+CGG + chr4_2:60482639-60482658 Msa0612090:intron 25.0%
! TGAATGATATTGATACAATC+TGG + chr4_2:60482738-60482757 Msa0612090:intron 25.0%
! TTTATATTTACTTTGCAGAG+AGG + chr4_2:60482824-60482843 Msa0612090:intron 25.0%
! AGAGGTTGAAAATATTAAGA+AGG + chr4_2:60482842-60482861 Msa0612090:CDS 25.0%
! TTGAAAATTTCAATCTTCTG+CGG - chr4_2:60482918-60482937 None:intergenic 25.0%
!! GATTGAAATTTTCAAATCGT+TGG + chr4_2:60482923-60482942 Msa0612090:CDS 25.0%
!! AATACTGAATTTGCTCAAAA+TGG + chr4_2:60483425-60483444 Msa0612090:intron 25.0%
! TGAGTCAAAAATGAATTCAA+GGG - chr4_2:60483552-60483571 None:intergenic 25.0%
! TTGAGTCAAAAATGAATTCA+AGG - chr4_2:60483553-60483572 None:intergenic 25.0%
!!! TTCAGTTTGTCATTTTTGTT+TGG + chr4_2:60484280-60484299 Msa0612090:three_prime_UTR 25.0%
! TAAAACATATCACTACTACA+AGG - chr4_2:60484385-60484404 None:intergenic 25.0%
!! TTGTCATTTATTCTTCATTG+CGG + chr4_2:60484520-60484539 Msa0612090:three_prime_UTR 25.0%
GAAGAAGAAGAAGATGAATT+TGG - chr4_2:60481501-60481520 None:intergenic 30.0%
AAAATGTTTGTGTAGGGAAA+GGG - chr4_2:60481555-60481574 None:intergenic 30.0%
AGAAGGAAAATGTTTGTGTA+GGG - chr4_2:60481561-60481580 None:intergenic 30.0%
!! TGCATGTATAGTCTTATAGT+TGG + chr4_2:60481854-60481873 Msa0612090:intron 30.0%
AGAATATTAGAAGATACTGG+AGG - chr4_2:60482075-60482094 None:intergenic 30.0%
GCTTCGCTATAAATTCAATT+TGG + chr4_2:60482171-60482190 Msa0612090:intron 30.0%
ATCAAATCAAATCAAGCAGA+TGG - chr4_2:60482281-60482300 None:intergenic 30.0%
!! ATCAAATTTTAACGAGCCAT+TGG - chr4_2:60482390-60482409 None:intergenic 30.0%
! AAAATCACCGAACTTCATTT+TGG + chr4_2:60482432-60482451 Msa0612090:intron 30.0%
ATTAACCTATGCATTTAAGG+TGG + chr4_2:60482587-60482606 Msa0612090:intron 30.0%
!! CATTTTGATGATATCTACAC+GGG + chr4_2:60482640-60482659 Msa0612090:intron 30.0%
CAAAAGCAAGATCATTTGAA+TGG + chr4_2:60482775-60482794 Msa0612090:intron 30.0%
! TGAAATTTTCAAATCGTTGG+AGG + chr4_2:60482926-60482945 Msa0612090:CDS 30.0%
! GAAATTTTCAAATCGTTGGA+GGG + chr4_2:60482927-60482946 Msa0612090:CDS 30.0%
AGAACAACAAAGTAATCATC+TGG - chr4_2:60483089-60483108 None:intergenic 30.0%
!! AGATGATTACTTTGTTGTTC+TGG + chr4_2:60483088-60483107 Msa0612090:CDS 30.0%
TTAAGCATAGTTTGGTAAGT+AGG - chr4_2:60483143-60483162 None:intergenic 30.0%
! CCAAAGTATTAAGCATAGTT+TGG - chr4_2:60483151-60483170 None:intergenic 30.0%
CCAAACTATGCTTAATACTT+TGG + chr4_2:60483148-60483167 Msa0612090:CDS 30.0%
ACTATGCTTAATACTTTGGA+TGG + chr4_2:60483152-60483171 Msa0612090:CDS 30.0%
AATAAGTATCTCTACTTGTC+CGG + chr4_2:60483266-60483285 Msa0612090:CDS 30.0%
CAATTTGTCTCATATCAACA+CGG - chr4_2:60483292-60483311 None:intergenic 30.0%
AAGATCATCAATAGATGTCT+AGG - chr4_2:60483357-60483376 None:intergenic 30.0%
! TCTCTCTAATTTTGGATTGA+TGG + chr4_2:60483617-60483636 Msa0612090:intron 30.0%
TTTGGATTGATGGAATTTGA+TGG + chr4_2:60483627-60483646 Msa0612090:intron 30.0%
! ATTGATGGAATTTGATGGAT+AGG + chr4_2:60483632-60483651 Msa0612090:intron 30.0%
!! AAAGATAGTGGAAAAGCTAT+TGG + chr4_2:60483833-60483852 Msa0612090:CDS 30.0%
!! ATATACTTGAGTTTCTGGTT+GGG + chr4_2:60484018-60484037 Msa0612090:CDS 30.0%
ATTCAGTTGGATTCATGATA+GGG + chr4_2:60484178-60484197 Msa0612090:CDS 30.0%
GTACTACTCTAAGCATATTA+AGG + chr4_2:60484203-60484222 Msa0612090:exon 30.0%
!! TCCTTTAAAGGCAATTTTGA+TGG + chr4_2:60484484-60484503 Msa0612090:three_prime_UTR 30.0%
CTACAAGCAACAAATTTACA+TGG - chr4_2:60484569-60484588 None:intergenic 30.0%
ATAGGCTACATTGGTATATT+AGG + chr4_2:60484599-60484618 Msa0612090:three_prime_UTR 30.0%
ATGTGTATGACTGTATTGTG+AGG - chr4_2:60481418-60481437 None:intergenic 35.0%
GAAGATGAATTTGGGAATCA+CGG - chr4_2:60481492-60481511 None:intergenic 35.0%
TCTTCAATCGAATCCAACAA+TGG + chr4_2:60481516-60481535 Msa0612090:exon 35.0%
AAATGTTTGTGTAGGGAAAG+GGG - chr4_2:60481554-60481573 None:intergenic 35.0%
GAAAATGTTTGTGTAGGGAA+AGG - chr4_2:60481556-60481575 None:intergenic 35.0%
GAGAAGGAAAATGTTTGTGT+AGG - chr4_2:60481562-60481581 None:intergenic 35.0%
ATGCGCGATGAATTGAAAAA+GGG - chr4_2:60481663-60481682 None:intergenic 35.0%
AATGCGCGATGAATTGAAAA+AGG - chr4_2:60481664-60481683 None:intergenic 35.0%
! TCGTTTGGTGAAATGATTGT+TGG + chr4_2:60481789-60481808 Msa0612090:intron 35.0%
! CGTTTGGTGAAATGATTGTT+GGG + chr4_2:60481790-60481809 Msa0612090:intron 35.0%
! GTTTGGTGAAATGATTGTTG+GGG + chr4_2:60481791-60481810 Msa0612090:intron 35.0%
TTTGGTGAAATGATTGTTGG+GGG + chr4_2:60481792-60481811 Msa0612090:intron 35.0%
!! TATAGTTGGTGACGATATTC+AGG + chr4_2:60481868-60481887 Msa0612090:intron 35.0%
AGAACGGTGTGAATATAAGT+TGG - chr4_2:60481928-60481947 None:intergenic 35.0%
GATACTGGAGGAAAAACATA+GGG - chr4_2:60482063-60482082 None:intergenic 35.0%
AGATACTGGAGGAAAAACAT+AGG - chr4_2:60482064-60482083 None:intergenic 35.0%
CACACAGATTTATGTTGAAC+AGG - chr4_2:60482215-60482234 None:intergenic 35.0%
!! AATTTTAACGAGCCATTGGA+CGG - chr4_2:60482386-60482405 None:intergenic 35.0%
AAGCAAGATCATTTGAATGG+TGG + chr4_2:60482778-60482797 Msa0612090:intron 35.0%
AAAATTTCAATCTTCTGCGG+AGG - chr4_2:60482915-60482934 None:intergenic 35.0%
! AGGTTTAAGGTGAGTCAATA+AGG - chr4_2:60482967-60482986 None:intergenic 35.0%
AACACTTCTCTACAGGTTTA+AGG - chr4_2:60482980-60482999 None:intergenic 35.0%
! TTAAACCTGTAGAGAAGTGT+TGG + chr4_2:60482979-60482998 Msa0612090:CDS 35.0%
!! GATTACTTTGTTGTTCTGGT+TGG + chr4_2:60483092-60483111 Msa0612090:CDS 35.0%
ACAGCTGAAGAAAATAGACA+TGG + chr4_2:60483233-60483252 Msa0612090:CDS 35.0%
AAGACAATTCAGTACCTGAT+TGG + chr4_2:60483314-60483333 Msa0612090:CDS 35.0%
! AATTTGATGGATAGGATCCT+CGG + chr4_2:60483640-60483659 Msa0612090:intron 35.0%
TGTAGATAAAGCCAAGGTAA+GGG - chr4_2:60483677-60483696 None:intergenic 35.0%
ATGAAGTGTAGATAAAGCCA+AGG - chr4_2:60483683-60483702 None:intergenic 35.0%
TCTACACTTCATTTCAAGAG+AGG + chr4_2:60483691-60483710 Msa0612090:CDS 35.0%
CTACACTTCATTTCAAGAGA+GGG + chr4_2:60483692-60483711 Msa0612090:CDS 35.0%
TGTGTTTCCATGCGATATAA+AGG - chr4_2:60483721-60483740 None:intergenic 35.0%
AAAGCAATAACTGTTCCATC+AGG - chr4_2:60483867-60483886 None:intergenic 35.0%
CAGCAGAATAGTTATCAAAC+AGG - chr4_2:60483956-60483975 None:intergenic 35.0%
AAGTATATCAGCATAGTCCT+TGG - chr4_2:60484006-60484025 None:intergenic 35.0%
TGCTGATATACTTGAGTTTC+TGG + chr4_2:60484013-60484032 Msa0612090:CDS 35.0%
!! GATATACTTGAGTTTCTGGT+TGG + chr4_2:60484017-60484036 Msa0612090:CDS 35.0%
AATCCAACTGAATGCAAGTT+TGG - chr4_2:60484171-60484190 None:intergenic 35.0%
CATTCAGTTGGATTCATGAT+AGG + chr4_2:60484177-60484196 Msa0612090:CDS 35.0%
TCTGTTAAGCATAAGCAATC+AGG + chr4_2:60484327-60484346 Msa0612090:three_prime_UTR 35.0%
CTGTTAAGCATAAGCAATCA+GGG + chr4_2:60484328-60484347 Msa0612090:three_prime_UTR 35.0%
TGTTAAGCATAAGCAATCAG+GGG + chr4_2:60484329-60484348 Msa0612090:three_prime_UTR 35.0%
GTGTGTGAAAAGTCCTTTAA+AGG + chr4_2:60484472-60484491 Msa0612090:three_prime_UTR 35.0%
GCCATCAAAATTGCCTTTAA+AGG - chr4_2:60484488-60484507 None:intergenic 35.0%
! TTTGTTGCTTGTAGCTTCAT+TGG + chr4_2:60484575-60484594 Msa0612090:three_prime_UTR 35.0%
TTCATTGGAATAGGCTACAT+TGG + chr4_2:60484590-60484609 Msa0612090:three_prime_UTR 35.0%
! TGAAAAAGGGATCACTGACT+TGG - chr4_2:60481650-60481669 None:intergenic 40.0%
CGATATTCAGGATGCTTGTT+TGG + chr4_2:60481880-60481899 Msa0612090:intron 40.0%
GGTATAAACGCATATTCCCT+AGG + chr4_2:60482146-60482165 Msa0612090:intron 40.0%
ATAAACGCATATTCCCTAGG+TGG + chr4_2:60482149-60482168 Msa0612090:intron 40.0%
ATTTATAGCGAAGCCACCTA+GGG - chr4_2:60482165-60482184 None:intergenic 40.0%
AATTTATAGCGAAGCCACCT+AGG - chr4_2:60482166-60482185 None:intergenic 40.0%
TGACGGTCCAAAATGAAGTT+CGG - chr4_2:60482442-60482461 None:intergenic 40.0%
CTGCAGTCACACAAAATTGA+CGG - chr4_2:60482459-60482478 None:intergenic 40.0%
! AACCTATGCATTTAAGGTGG+TGG + chr4_2:60482590-60482609 Msa0612090:intron 40.0%
TACCACCACCTTAAATGCAT+AGG - chr4_2:60482595-60482614 None:intergenic 40.0%
! TTTTCAAATCGTTGGAGGGT+TGG + chr4_2:60482931-60482950 Msa0612090:CDS 40.0%
TTTCAAATCGTTGGAGGGTT+GGG + chr4_2:60482932-60482951 Msa0612090:CDS 40.0%
! TGTTGTTCTGGTTGGAGATA+TGG + chr4_2:60483100-60483119 Msa0612090:CDS 40.0%
GTGTAGATAAAGCCAAGGTA+AGG - chr4_2:60483678-60483697 None:intergenic 40.0%
TCTTTGTGTAAGCAGTCTCA+TGG - chr4_2:60483818-60483837 None:intergenic 40.0%
GACTGCTTACACAAAGATAG+TGG + chr4_2:60483821-60483840 Msa0612090:CDS 40.0%
CTATTGGAGATTGATCCTGA+TGG + chr4_2:60483849-60483868 Msa0612090:CDS 40.0%
!! TTGCTTTTGCTGACATGATG+AGG + chr4_2:60483880-60483899 Msa0612090:CDS 40.0%
TATCAAACAGGTTGTCGTCT+CGG - chr4_2:60483944-60483963 None:intergenic 40.0%
CATCCAAACTTGCATTCAGT+TGG + chr4_2:60484165-60484184 Msa0612090:CDS 40.0%
AATCTTCCAGCAACTCTACT+TGG + chr4_2:60484235-60484254 Msa0612090:three_prime_UTR 40.0%
!!! AAAGGCAATTTTGATGGCGA+TGG + chr4_2:60484490-60484509 Msa0612090:three_prime_UTR 40.0%
!!! AAGGCAATTTTGATGGCGAT+GGG + chr4_2:60484491-60484510 Msa0612090:three_prime_UTR 40.0%
TTATTCTTCATTGCGGTCAC+CGG + chr4_2:60484527-60484546 Msa0612090:three_prime_UTR 40.0%
GCTTGTAGCTTCATTGGAAT+AGG + chr4_2:60484581-60484600 Msa0612090:three_prime_UTR 40.0%
GGCTACATTGGTATATTAGG+AGG + chr4_2:60484602-60484621 Msa0612090:three_prime_UTR 40.0%
GCAAGAATGGACAATGGGAA+GGG - chr4_2:60481390-60481409 None:intergenic 45.0%
CAGAGGCAAGAATGGACAAT+GGG - chr4_2:60481395-60481414 None:intergenic 45.0%
ATGACTGTATTGTGAGGCAG+AGG - chr4_2:60481412-60481431 None:intergenic 45.0%
TTCCTTCTCTCTCCCTCAAA+TGG + chr4_2:60481573-60481592 Msa0612090:CDS 45.0%
! ATCTGAGACTGGCCATTTGA+GGG - chr4_2:60481588-60481607 None:intergenic 45.0%
! GAATTTGGGAGATCTGAGAC+TGG - chr4_2:60481599-60481618 None:intergenic 45.0%
CAGATCTCCCAAATTCGTCA+TGG + chr4_2:60481603-60481622 Msa0612090:CDS 45.0%
GTGGAAGCCATGACGAATTT+GGG - chr4_2:60481613-60481632 None:intergenic 45.0%
!! TCACTGACTTGGAACCAGAA+CGG - chr4_2:60481639-60481658 None:intergenic 45.0%
TGGTCATACAGTTGCGATGT+TGG + chr4_2:60482357-60482376 Msa0612090:intron 45.0%
TCATACAGTTGCGATGTTGG+TGG + chr4_2:60482360-60482379 Msa0612090:intron 45.0%
! CGTCAATTTTGTGTGACTGC+AGG + chr4_2:60482457-60482476 Msa0612090:intron 45.0%
TTTGCTCACTGCAGCAAATC+CGG + chr4_2:60482481-60482500 Msa0612090:intron 45.0%
AGAATCGGTAAACATGGACC+CGG - chr4_2:60482503-60482522 None:intergenic 45.0%
TGGAGCTGAATACAGAGTAC+TGG + chr4_2:60482541-60482560 Msa0612090:intron 45.0%
ACTTGGACATGCACTTCTCT+GGG - chr4_2:60482879-60482898 None:intergenic 45.0%
TACTTGGACATGCACTTCTC+TGG - chr4_2:60482880-60482899 None:intergenic 45.0%
AATCCATCTGAGGAAGGATC+GGG - chr4_2:60483023-60483042 None:intergenic 45.0%
GAATCCATCTGAGGAAGGAT+CGG - chr4_2:60483024-60483043 None:intergenic 45.0%
TCTTCGAATCCATCTGAGGA+AGG - chr4_2:60483029-60483048 None:intergenic 45.0%
TTGCTCTTCGAATCCATCTG+AGG - chr4_2:60483033-60483052 None:intergenic 45.0%
TGGATTCGAAGAGCAAGTGA+AGG + chr4_2:60483037-60483056 Msa0612090:CDS 45.0%
AAGTGAAGGAACTGAGAGAG+AGG + chr4_2:60483051-60483070 Msa0612090:CDS 45.0%
AGTGAAGGAACTGAGAGAGA+GGG + chr4_2:60483052-60483071 Msa0612090:CDS 45.0%
GATGGAGTTCGTGATGAAAC+TGG + chr4_2:60483170-60483189 Msa0612090:CDS 45.0%
TCCAAATAGCCCAAGGAGTA+GGG - chr4_2:60483202-60483221 None:intergenic 45.0%
TCCTTGGGCTATTTGGACAA+GGG + chr4_2:60483205-60483224 Msa0612090:CDS 45.0%
TTGTCTCATATCAACACGGC+CGG - chr4_2:60483288-60483307 None:intergenic 45.0%
! ATTCAGTACCTGATTGGCTC+TGG + chr4_2:60483320-60483339 Msa0612090:CDS 45.0%
TTACCATTCCAGAGCCAATC+AGG - chr4_2:60483331-60483350 None:intergenic 45.0%
CAGTGACACATTGATGCATC+AGG - chr4_2:60483479-60483498 None:intergenic 45.0%
ACTGAGAATAGCCCTTACCT+TGG + chr4_2:60483663-60483682 Msa0612090:CDS 45.0%
! TTGAAGTTGGCTCAGATCTG+TGG + chr4_2:60483768-60483787 Msa0612090:CDS 45.0%
!! TACTTGAGTTTCTGGTTGGG+AGG + chr4_2:60484021-60484040 Msa0612090:CDS 45.0%
ACCTGAAAGTCCGGTTATGT+CGG - chr4_2:60484057-60484076 None:intergenic 45.0%
! ATAACCGGACTTTCAGGTGA+GGG + chr4_2:60484059-60484078 Msa0612090:CDS 45.0%
! AAGGCACAGGAGTATGTTTG+TGG + chr4_2:60484086-60484105 Msa0612090:CDS 45.0%
! AGGCACAGGAGTATGTTTGT+GGG + chr4_2:60484087-60484106 Msa0612090:CDS 45.0%
ATTGCTCCAAGTAGAGTTGC+TGG - chr4_2:60484244-60484263 None:intergenic 45.0%
GAAACAATCGTTCTGTTGCG+TGG + chr4_2:60484304-60484323 Msa0612090:three_prime_UTR 45.0%
! GGACTTTTCACACACATGCA+CGG - chr4_2:60484467-60484486 None:intergenic 45.0%
TGGCACCAACTCAAGTATTC+CGG - chr4_2:60484549-60484568 None:intergenic 45.0%
!! TATTTATTAAAATAAAAAAG+AGG - chr4_2:60481996-60482015 None:intergenic 5.0%
GGCAAGAATGGACAATGGGA+AGG - chr4_2:60481391-60481410 None:intergenic 50.0%
GCAGAGGCAAGAATGGACAA+TGG - chr4_2:60481396-60481415 None:intergenic 50.0%
TTGTGAGGCAGAGGCAAGAA+TGG - chr4_2:60481403-60481422 None:intergenic 50.0%
!! GTTGCTCTGAGAGCCATTGT+TGG - chr4_2:60481532-60481551 None:intergenic 50.0%
! GATCTGAGACTGGCCATTTG+AGG - chr4_2:60481589-60481608 None:intergenic 50.0%
GGTGGAAGCCATGACGAATT+TGG - chr4_2:60481614-60481633 None:intergenic 50.0%
! TGACTTGGAACCAGAACGGA+GGG - chr4_2:60481635-60481654 None:intergenic 50.0%
GGTGAAATGATTGTTGGGGG+TGG + chr4_2:60481795-60481814 Msa0612090:intron 50.0%
TTGCTCACTGCAGCAAATCC+GGG + chr4_2:60482482-60482501 Msa0612090:intron 50.0%
!! GAGGCATAGAGTGGGTTACT+TGG - chr4_2:60482896-60482915 None:intergenic 50.0%
GGTTGCCAACACTTCTCTAC+AGG - chr4_2:60482987-60483006 None:intergenic 50.0%
!! AGAGAAGTGTTGGCAACCAC+AGG + chr4_2:60482989-60483008 Msa0612090:CDS 50.0%
GTCCAAATAGCCCAAGGAGT+AGG - chr4_2:60483203-60483222 None:intergenic 50.0%
CTCCTTGGGCTATTTGGACA+AGG + chr4_2:60483204-60483223 Msa0612090:CDS 50.0%
!! GTACCTGATTGGCTCTGGAA+TGG + chr4_2:60483325-60483344 Msa0612090:CDS 50.0%
TAAGGGCTATTCTCAGTCCG+AGG - chr4_2:60483660-60483679 None:intergenic 50.0%
AGGGCGACCTTTATATCGCA+TGG + chr4_2:60483711-60483730 Msa0612090:CDS 50.0%
TATCGCATGGAAACACAGCC+AGG + chr4_2:60483724-60483743 Msa0612090:CDS 50.0%
!! AAACACAGCCAGGCTTGCTA+AGG + chr4_2:60483734-60483753 Msa0612090:CDS 50.0%
CTCATGGCGTTTCTCATCAG+AGG - chr4_2:60483802-60483821 None:intergenic 50.0%
CCATCATACATCAGGTGTGC+TGG - chr4_2:60483921-60483940 None:intergenic 50.0%
CCAGCACACCTGATGTATGA+TGG + chr4_2:60483918-60483937 Msa0612090:CDS 50.0%
AGTGTAGACTCCAATGCGCT+GGG - chr4_2:60483982-60484001 None:intergenic 50.0%
CATTGGAGTCTACACTGCCA+AGG + chr4_2:60483986-60484005 Msa0612090:CDS 50.0%
!! TTGAGTTTCTGGTTGGGAGG+TGG + chr4_2:60484024-60484043 Msa0612090:CDS 50.0%
! CATAACCGGACTTTCAGGTG+AGG + chr4_2:60484058-60484077 Msa0612090:CDS 50.0%
! ACTTTCAGGTGAGGGACGAA+AGG + chr4_2:60484067-60484086 Msa0612090:CDS 50.0%
GGTTGCCACCAAGAATCAGA+AGG + chr4_2:60484108-60484127 Msa0612090:CDS 50.0%
TCCAGCCTTCTGATTCTTGG+TGG - chr4_2:60484116-60484135 None:intergenic 50.0%
ACCAAGAATCAGAAGGCTGG+AGG + chr4_2:60484115-60484134 Msa0612090:CDS 50.0%
TCCTCCAGCCTTCTGATTCT+TGG - chr4_2:60484119-60484138 None:intergenic 50.0%
GAGAGCTTCAGCAAGAGCAA+AGG + chr4_2:60484139-60484158 Msa0612090:CDS 50.0%
GGTCACCGGAATACTTGAGT+TGG + chr4_2:60484541-60484560 Msa0612090:three_prime_UTR 50.0%
GGCCATTTGAGGGAGAGAGA+AGG - chr4_2:60481578-60481597 None:intergenic 55.0%
!! CTGACTTGGAACCAGAACGG+AGG - chr4_2:60481636-60481655 None:intergenic 55.0%
TGGACATGCACTTCTCTGGG+AGG - chr4_2:60482876-60482895 None:intergenic 55.0%
! CTTCTGCGGAGGCATAGAGT+GGG - chr4_2:60482904-60482923 None:intergenic 55.0%
! TCTTCTGCGGAGGCATAGAG+TGG - chr4_2:60482905-60482924 None:intergenic 55.0%
GGATCGGGCAGAAAATCCTG+TGG - chr4_2:60483008-60483027 None:intergenic 55.0%
AATAGCCCAAGGAGTAGGGC+TGG - chr4_2:60483198-60483217 None:intergenic 55.0%
GCCCTACTCCTTGGGCTATT+TGG + chr4_2:60483198-60483217 Msa0612090:CDS 55.0%
GCCCTTGTCCAAATAGCCCA+AGG - chr4_2:60483209-60483228 None:intergenic 55.0%
GGGCTATTTGGACAAGGGCA+TGG + chr4_2:60483210-60483229 Msa0612090:CDS 55.0%
! GGAACGCGGCGATTTGAAGT+TGG + chr4_2:60483755-60483774 Msa0612090:CDS 55.0%
CGTCTCGGCCATCATACATC+AGG - chr4_2:60483929-60483948 None:intergenic 55.0%
CAGTGTAGACTCCAATGCGC+TGG - chr4_2:60483983-60484002 None:intergenic 55.0%
!! GTTTCTGGTTGGGAGGTGGA+AGG + chr4_2:60484028-60484047 Msa0612090:CDS 55.0%
TGGAAGGTGGCCGACATAAC+CGG + chr4_2:60484044-60484063 Msa0612090:CDS 55.0%
GCCGACATAACCGGACTTTC+AGG + chr4_2:60484053-60484072 Msa0612090:CDS 55.0%
TCGTCCCTCACCTGAAAGTC+CGG - chr4_2:60484066-60484085 None:intergenic 55.0%
GCCACCAAGAATCAGAAGGC+TGG + chr4_2:60484112-60484131 Msa0612090:CDS 55.0%
ATGGCTTCCACCCTCCGTTC+TGG + chr4_2:60481622-60481641 Msa0612090:CDS 60.0%
CTTGGAACCAGAACGGAGGG+TGG - chr4_2:60481632-60481651 None:intergenic 60.0%
!! CGATGTTGGTGGCCGTCCAA+TGG + chr4_2:60482371-60482390 Msa0612090:intron 60.0%
ATCGTTGGAGGGTTGGGCTG+AGG + chr4_2:60482938-60482957 Msa0612090:CDS 60.0%
CTGCCCGATCCTTCCTCAGA+TGG + chr4_2:60483017-60483036 Msa0612090:CDS 60.0%
! TGGTGCCAGCCCTACTCCTT+GGG + chr4_2:60483190-60483209 Msa0612090:CDS 60.0%
!! GCCAGGCTTGCTAAGGAACG+CGG + chr4_2:60483741-60483760 Msa0612090:CDS 60.0%
TCTGCTGTTGCCCAGCGCAT+TGG + chr4_2:60483969-60483988 Msa0612090:CDS 60.0%
TCTGGTTGGGAGGTGGAAGG+TGG + chr4_2:60484031-60484050 Msa0612090:CDS 60.0%
! AGGTGAGGGACGAAAGGCAC+AGG + chr4_2:60484073-60484092 Msa0612090:CDS 60.0%
! CTGGTGCCAGCCCTACTCCT+TGG + chr4_2:60483189-60483208 Msa0612090:CDS 65.0%
GCCGCGTTCCTTAGCAAGCC+TGG - chr4_2:60483745-60483764 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 60481364 60484667 60481364 ID=Msa0612090;Name=Msa0612090
chr4_2 mRNA 60481364 60484667 60481364 ID=Msa0612090-mRNA-1;Parent=Msa0612090;Name=Msa0612090-mRNA-1;_AED=0.05;_eAED=0.05;_QI=171|1|1|1|1|1|3|453|393
chr4_2 exon 60481364 60481650 60481364 ID=Msa0612090-mRNA-1:exon:16266;Parent=Msa0612090-mRNA-1
chr4_2 exon 60482842 60483346 60482842 ID=Msa0612090-mRNA-1:exon:16267;Parent=Msa0612090-mRNA-1
chr4_2 exon 60483654 60484667 60483654 ID=Msa0612090-mRNA-1:exon:16268;Parent=Msa0612090-mRNA-1
chr4_2 five_prime_UTR 60481364 60481534 60481364 ID=Msa0612090-mRNA-1:five_prime_utr;Parent=Msa0612090-mRNA-1
chr4_2 CDS 60481535 60481650 60481535 ID=Msa0612090-mRNA-1:cds;Parent=Msa0612090-mRNA-1
chr4_2 CDS 60482842 60483346 60482842 ID=Msa0612090-mRNA-1:cds;Parent=Msa0612090-mRNA-1
chr4_2 CDS 60483654 60484214 60483654 ID=Msa0612090-mRNA-1:cds;Parent=Msa0612090-mRNA-1
chr4_2 three_prime_UTR 60484215 60484667 60484215 ID=Msa0612090-mRNA-1:three_prime_utr;Parent=Msa0612090-mRNA-1
Gene Sequence

>Msa0612090

ATGGCTCTCAGAGCAACCCCTTTCCCTACACAAACATTTTCCTTCTCTCTCCCTCAAATGGCCAGTCTCAGATCTCCCAAATTCGTCATGGCTTCCACCCTCCGTTCTGGTTCCAAAGAGGTTGAAAATATTAAGAAGGCTTTCACACCTCCCAGAGAAGTGCATGTCCAAGTAACCCACTCTATGCCTCCGCAGAAGATTGAAATTTTCAAATCGTTGGAGGGTTGGGCTGAGGAAACCTTATTGACTCACCTTAAACCTGTAGAGAAGTGTTGGCAACCACAGGATTTTCTGCCCGATCCTTCCTCAGATGGATTCGAAGAGCAAGTGAAGGAACTGAGAGAGAGGGCAAAAGAGCTTCCAGATGATTACTTTGTTGTTCTGGTTGGAGATATGGTCACAGAAGAAGCTCTTCCTACTTACCAAACTATGCTTAATACTTTGGATGGAGTTCGTGATGAAACTGGTGCCAGCCCTACTCCTTGGGCTATTTGGACAAGGGCATGGACAGCTGAAGAAAATAGACATGGCGATCTTCTTAATAAGTATCTCTACTTGTCCGGCCGTGTTGATATGAGACAAATTGAGAAGACAATTCAGTACCTGATTGGCTCTGGAATGGATCCTCGGACTGAGAATAGCCCTTACCTTGGCTTTATCTACACTTCATTTCAAGAGAGGGCGACCTTTATATCGCATGGAAACACAGCCAGGCTTGCTAAGGAACGCGGCGATTTGAAGTTGGCTCAGATCTGTGGTCTGATTGCCTCTGATGAGAAACGCCATGAGACTGCTTACACAAAGATAGTGGAAAAGCTATTGGAGATTGATCCTGATGGAACAGTTATTGCTTTTGCTGACATGATGAGGAAGAAAATTGCTATGCCAGCACACCTGATGTATGATGGCCGAGACGACAACCTGTTTGATAACTATTCTGCTGTTGCCCAGCGCATTGGAGTCTACACTGCCAAGGACTATGCTGATATACTTGAGTTTCTGGTTGGGAGGTGGAAGGTGGCCGACATAACCGGACTTTCAGGTGAGGGACGAAAGGCACAGGAGTATGTTTGTGGGTTGCCACCAAGAATCAGAAGGCTGGAGGAGAGAGCTTCAGCAAGAGCAAAGGAATCATCCAAACTTGCATTCAGTTGGATTCATGATAGGGAAGTACTACTCTAA

Protein sequence

>Msa0612090

MALRATPFPTQTFSFSLPQMASLRSPKFVMASTLRSGSKEVENIKKAFTPPREVHVQVTHSMPPQKIEIFKSLEGWAEETLLTHLKPVEKCWQPQDFLPDPSSDGFEEQVKELRERAKELPDDYFVVLVGDMVTEEALPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKERGDLKLAQICGLIASDEKRHETAYTKIVEKLLEIDPDGTVIAFADMMRKKIAMPAHLMYDGRDDNLFDNYSAVAQRIGVYTAKDYADILEFLVGRWKVADITGLSGEGRKAQEYVCGLPPRIRRLEERASARAKESSKLAFSWIHDREVLL*