Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134000 | XP_003592309.1 | 98.799 | 333 | 4 | 0 | 1 | 333 | 1 | 333 | 0.0 | 675 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134000 | sp|Q9LYP4|BAG3_ARATH | 51.471 | 340 | 121 | 9 | 1 | 333 | 1 | 303 | 1.24e-105 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134000 | G7IAQ7 | 98.799 | 333 | 4 | 0 | 1 | 333 | 1 | 333 | 0.0 | 675 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa0134000 | 0.825263 | 5.156612e-54 | -8.615850e-47 |
| Msa0014570 | Msa0134000 | 0.811885 | 5.596851e-51 | -8.615850e-47 |
| Msa0022750 | Msa0134000 | -0.814419 | 1.555581e-51 | -8.615850e-47 |
| Msa0030280 | Msa0134000 | 0.829184 | 5.934025e-55 | -8.615850e-47 |
| Msa0032320 | Msa0134000 | 0.809331 | 1.995064e-50 | -8.615850e-47 |
| Msa0039250 | Msa0134000 | 0.870756 | 1.147046e-66 | -8.615850e-47 |
| Msa0039570 | Msa0134000 | 0.802520 | 5.396170e-49 | -8.615850e-47 |
| Msa0052870 | Msa0134000 | 0.827702 | 1.352416e-54 | -8.615850e-47 |
| Msa0055070 | Msa0134000 | 0.806807 | 6.875626e-50 | -8.615850e-47 |
| Msa0057590 | Msa0134000 | 0.820979 | 5.151021e-53 | -8.615850e-47 |
| Msa0069600 | Msa0134000 | 0.834337 | 3.176781e-56 | -8.615850e-47 |
| Msa0070430 | Msa0134000 | 0.809891 | 1.512427e-50 | -8.615850e-47 |
| Msa0077880 | Msa0134000 | 0.816036 | 6.800838e-52 | -8.615850e-47 |
| Msa0101020 | Msa0134000 | 0.800269 | 1.560030e-48 | -8.615850e-47 |
| Msa0108870 | Msa0134000 | 0.814618 | 1.405613e-51 | -8.615850e-47 |
| Msa0116790 | Msa0134000 | 0.857406 | 1.668695e-62 | -8.615850e-47 |
| Msa0119320 | Msa0134000 | 0.828195 | 1.028918e-54 | -8.615850e-47 |
| Msa0133720 | Msa0134000 | 0.866529 | 2.666724e-65 | -8.615850e-47 |
| Msa0133820 | Msa0134000 | 0.858914 | 5.936888e-63 | -8.615850e-47 |
| Msa0134000 | Msa0138360 | 0.822624 | 2.143898e-53 | -8.615850e-47 |
| Msa0134000 | Msa0145110 | 0.805321 | 1.412620e-49 | -8.615850e-47 |
| Msa0134000 | Msa0147980 | 0.838091 | 3.534060e-57 | -8.615850e-47 |
| Msa0134000 | Msa0154440 | 0.822157 | 2.752475e-53 | -8.615850e-47 |
| Msa0134000 | Msa0181000 | 0.968157 | 2.797432e-128 | -8.615850e-47 |
| Msa0134000 | Msa0181230 | 0.844930 | 5.572285e-59 | -8.615850e-47 |
| Msa0134000 | Msa0187030 | 0.801442 | 8.988780e-49 | -8.615850e-47 |
| Msa0134000 | Msa0192640 | 0.801830 | 7.482739e-49 | -8.615850e-47 |
| Msa0134000 | Msa0193540 | 0.807740 | 4.360609e-50 | -8.615850e-47 |
| Msa0134000 | Msa0196340 | 0.803860 | 2.848886e-49 | -8.615850e-47 |
| Msa0134000 | Msa0198520 | 0.803965 | 2.709705e-49 | -8.615850e-47 |
| Msa0134000 | Msa0198530 | 0.804915 | 1.717322e-49 | -8.615850e-47 |
| Msa0134000 | Msa0229940 | 0.817832 | 2.687325e-52 | -8.615850e-47 |
| Msa0134000 | Msa0230370 | 0.844733 | 6.298468e-59 | -8.615850e-47 |
| Msa0134000 | Msa0238230 | 0.808425 | 3.117105e-50 | -8.615850e-47 |
| Msa0134000 | Msa0261160 | 0.862095 | 6.459764e-64 | -8.615850e-47 |
| Msa0134000 | Msa0274630 | 0.810690 | 1.016954e-50 | -8.615850e-47 |
| Msa0134000 | Msa0277420 | 0.856996 | 2.204160e-62 | -8.615850e-47 |
| Msa0134000 | Msa0307570 | 0.821545 | 3.814174e-53 | -8.615850e-47 |
| Msa0134000 | Msa0312530 | 0.825449 | 4.659523e-54 | -8.615850e-47 |
| Msa0134000 | Msa0317270 | 0.856793 | 2.529177e-62 | -8.615850e-47 |
| Msa0134000 | Msa0336700 | 0.815483 | 9.032640e-52 | -8.615850e-47 |
| Msa0134000 | Msa0343770 | 0.814152 | 1.781899e-51 | -8.615850e-47 |
| Msa0134000 | Msa0346990 | 0.813834 | 2.094602e-51 | -8.615850e-47 |
| Msa0134000 | Msa0384670 | 0.829303 | 5.550318e-55 | -8.615850e-47 |
| Msa0134000 | Msa0392200 | 0.816461 | 5.465945e-52 | -8.615850e-47 |
| Msa0134000 | Msa0394690 | 0.811814 | 5.798286e-51 | -8.615850e-47 |
| Msa0134000 | Msa0429090 | 0.804261 | 2.351026e-49 | -8.615850e-47 |
| Msa0134000 | Msa0434570 | 0.839099 | 1.939816e-57 | -8.615850e-47 |
| Msa0134000 | Msa0434770 | 0.842080 | 3.215801e-58 | -8.615850e-47 |
| Msa0134000 | Msa0443430 | 0.806051 | 9.923325e-50 | -8.615850e-47 |
| Msa0134000 | Msa0475500 | 0.800037 | 1.738861e-48 | -8.615850e-47 |
| Msa0134000 | Msa0478580 | 0.841399 | 4.864345e-58 | -8.615850e-47 |
| Msa0134000 | Msa0487780 | 0.808363 | 3.214006e-50 | -8.615850e-47 |
| Msa0134000 | Msa0518030 | 0.802534 | 5.361442e-49 | -8.615850e-47 |
| Msa0134000 | Msa0527190 | 0.812434 | 4.247807e-51 | -8.615850e-47 |
| Msa0134000 | Msa0547990 | 0.808226 | 3.436357e-50 | -8.615850e-47 |
| Msa0134000 | Msa0556010 | 0.831637 | 1.491056e-55 | -8.615850e-47 |
| Msa0134000 | Msa0576890 | 0.822044 | 2.923779e-53 | -8.615850e-47 |
| Msa0134000 | Msa0581690 | 0.831996 | 1.215965e-55 | -8.615850e-47 |
| Msa0134000 | Msa0583500 | 0.840140 | 1.040458e-57 | -8.615850e-47 |
| Msa0134000 | Msa0584550 | 0.826398 | 2.772265e-54 | -8.615850e-47 |
| Msa0134000 | Msa0588220 | 0.806679 | 7.318075e-50 | -8.615850e-47 |
| Msa0134000 | Msa0597770 | 0.821465 | 3.980495e-53 | -8.615850e-47 |
| Msa0134000 | Msa0606810 | 0.801291 | 9.648758e-49 | -8.615850e-47 |
| Msa0134000 | Msa0610090 | 0.803887 | 2.812247e-49 | -8.615850e-47 |
| Msa0134000 | Msa0630940 | 0.804962 | 1.679381e-49 | -8.615850e-47 |
| Msa0134000 | Msa0640500 | 0.819328 | 1.230514e-52 | -8.615850e-47 |
| Msa0134000 | Msa0644030 | 0.801104 | 1.053873e-48 | -8.615850e-47 |
| Msa0134000 | Msa0658480 | 0.811610 | 6.422992e-51 | -8.615850e-47 |
| Msa0134000 | Msa0669180 | 0.813510 | 2.468344e-51 | -8.615850e-47 |
| Msa0134000 | Msa0679100 | 0.820963 | 5.195390e-53 | -8.615850e-47 |
| Msa0134000 | Msa0689760 | 0.802822 | 4.674888e-49 | -8.615850e-47 |
| Msa0134000 | Msa0692880 | 0.802882 | 4.542395e-49 | -8.615850e-47 |
| Msa0134000 | Msa0716410 | 0.829268 | 5.660788e-55 | -8.615850e-47 |
| Msa0134000 | Msa0716860 | 0.821463 | 3.983896e-53 | -8.615850e-47 |
| Msa0134000 | Msa0716970 | 0.800680 | 1.286690e-48 | -8.615850e-47 |
| Msa0134000 | Msa0740720 | 0.828805 | 7.331360e-55 | -8.615850e-47 |
| Msa0134000 | Msa0750000 | 0.825458 | 4.636244e-54 | -8.615850e-47 |
| Msa0134000 | Msa0750250 | 0.849037 | 4.182220e-60 | -8.615850e-47 |
| Msa0134000 | Msa0757800 | 0.817685 | 2.901167e-52 | -8.615850e-47 |
| Msa0134000 | Msa0799000 | 0.841825 | 3.757140e-58 | -8.615850e-47 |
| Msa0134000 | Msa0837410 | 0.803443 | 3.477919e-49 | -8.615850e-47 |
| Msa0134000 | Msa0861450 | 0.836802 | 7.557865e-57 | -8.615850e-47 |
| Msa0134000 | Msa0879060 | 0.803374 | 3.594782e-49 | -8.615850e-47 |
| Msa0134000 | Msa0929090 | 0.847562 | 1.069380e-59 | -8.615850e-47 |
| Msa0134000 | Msa0962070 | 0.801859 | 7.380140e-49 | -8.615850e-47 |
| Msa0134000 | Msa0992030 | 0.824661 | 7.152745e-54 | -8.615850e-47 |
| Msa0134000 | Msa0993740 | 0.818935 | 1.511447e-52 | -8.615850e-47 |
| Msa0134000 | Msa0993760 | 0.837296 | 5.652498e-57 | -8.615850e-47 |
| Msa0134000 | Msa1010460 | 0.805438 | 1.334988e-49 | -8.615850e-47 |
| Msa0134000 | Msa1071660 | 0.804395 | 2.205461e-49 | -8.615850e-47 |
| Msa0134000 | Msa1098290 | 0.802439 | 5.607258e-49 | -8.615850e-47 |
| Msa0134000 | Msa1114040 | 0.806194 | 9.261611e-50 | -8.615850e-47 |
| Msa0134000 | Msa1128330 | 0.803353 | 3.629501e-49 | -8.615850e-47 |
| Msa0134000 | Msa1138320 | 0.804367 | 2.234712e-49 | -8.615850e-47 |
| Msa0134000 | Msa1158660 | 0.800625 | 1.319839e-48 | -8.615850e-47 |
| Msa0134000 | Msa1158770 | 0.822473 | 2.324377e-53 | -8.615850e-47 |
| Msa0134000 | Msa1168590 | 0.801394 | 9.194007e-49 | -8.615850e-47 |
| Msa0134000 | Msa1169720 | 0.860341 | 2.209431e-63 | -8.615850e-47 |
| Msa0134000 | Msa1198880 | 0.820281 | 7.452700e-53 | -8.615850e-47 |
| Msa0134000 | Msa1213810 | 0.820082 | 8.278563e-53 | -8.615850e-47 |
| Msa0134000 | Msa1214320 | 0.831375 | 1.729836e-55 | -8.615850e-47 |
| Msa0134000 | Msa1218920 | 0.819134 | 1.361863e-52 | -8.615850e-47 |
| Msa0134000 | Msa1223330 | 0.835528 | 1.592783e-56 | -8.615850e-47 |
| Msa0134000 | Msa1224840 | 0.802221 | 6.217541e-49 | -8.615850e-47 |
| Msa0134000 | Msa1252850 | -0.801608 | 8.310431e-49 | -8.615850e-47 |
| Msa0134000 | Msa1261070 | 0.833588 | 4.892720e-56 | -8.615850e-47 |
| Msa0134000 | Msa1262010 | 0.808847 | 2.533121e-50 | -8.615850e-47 |
| Msa0134000 | Msa1262960 | 0.836285 | 1.023677e-56 | -8.615850e-47 |
| Msa0134000 | Msa1286550 | 0.805472 | 1.313250e-49 | -8.615850e-47 |
| Msa0134000 | Msa1302060 | 0.844722 | 6.338460e-59 | -8.615850e-47 |
| Msa0134000 | Msa1329450 | 0.814292 | 1.659317e-51 | -8.615850e-47 |
| Msa0134000 | Msa1332840 | 0.830952 | 2.197761e-55 | -8.615850e-47 |
| Msa0134000 | Msa1333970 | 0.809210 | 2.117780e-50 | -8.615850e-47 |
| Msa0134000 | Msa1338830 | 0.810204 | 1.294990e-50 | -8.615850e-47 |
| Msa0134000 | Msa1344310 | 0.808366 | 3.208450e-50 | -8.615850e-47 |
| Msa0134000 | Msa1359920 | 0.816898 | 4.362093e-52 | -8.615850e-47 |
| Msa0134000 | Msa1366300 | 0.825721 | 4.015893e-54 | -8.615850e-47 |
| Msa0134000 | Msa1371520 | 0.816142 | 6.440677e-52 | -8.615850e-47 |
| Msa0134000 | Msa1373820 | 0.805738 | 1.154994e-49 | -8.615850e-47 |
| Msa0134000 | Msa1379590 | 0.812948 | 3.278842e-51 | -8.615850e-47 |
| Msa0134000 | Msa1390250 | 0.803752 | 3.000062e-49 | -8.615850e-47 |
| Msa0134000 | Msa1420250 | 0.803731 | 3.030379e-49 | -8.615850e-47 |
| Msa0134000 | Msa1422910 | 0.821396 | 4.127790e-53 | -8.615850e-47 |
| Msa0134000 | Msa1424640 | 0.818937 | 1.510451e-52 | -8.615850e-47 |
| Msa0134000 | Msa1432480 | 0.819138 | 1.359169e-52 | -8.615850e-47 |
| Msa0134000 | Msa1433220 | 0.825469 | 4.607677e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134000 | MtrunA17_Chr1g0203771 | 98.799 | 333 | 4 | 0 | 1 | 333 | 1 | 333 | 0.0 | 675 |
| Msa0134000 | MtrunA17_Chr6g0473621 | 63.333 | 360 | 100 | 7 | 1 | 333 | 1 | 355 | 5.99e-141 | 403 |
| Msa0134000 | MtrunA17_Chr4g0057261 | 48.592 | 284 | 115 | 5 | 18 | 301 | 28 | 280 | 5.70e-77 | 237 |
| Msa0134000 | MtrunA17_Chr2g0285591 | 45.070 | 213 | 114 | 1 | 17 | 229 | 25 | 234 | 3.17e-62 | 198 |
| Msa0134000 | MtrunA17_Chr7g0243051 | 40.909 | 220 | 128 | 2 | 6 | 224 | 2 | 220 | 2.54e-52 | 172 |
| Msa0134000 | MtrunA17_Chr4g0007601 | 45.455 | 187 | 102 | 0 | 39 | 225 | 19 | 205 | 1.91e-49 | 166 |
| Msa0134000 | MtrunA17_Chr6g0458271 | 39.815 | 108 | 61 | 1 | 21 | 128 | 37 | 140 | 3.84e-23 | 94.0 |
| Msa0134000 | MtrunA17_Chr6g0458281 | 38.889 | 108 | 61 | 1 | 21 | 128 | 35 | 137 | 8.80e-23 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134000 | AT5G07220.1 | 51.471 | 340 | 121 | 9 | 1 | 333 | 1 | 303 | 1.26e-106 | 314 |
| Msa0134000 | AT5G52060.1 | 54.403 | 318 | 125 | 7 | 22 | 333 | 39 | 342 | 6.38e-103 | 306 |
| Msa0134000 | AT5G62100.2 | 48.649 | 333 | 121 | 7 | 1 | 332 | 1 | 284 | 1.56e-99 | 295 |
| Msa0134000 | AT5G62100.1 | 47.093 | 344 | 121 | 8 | 1 | 332 | 1 | 295 | 9.43e-96 | 286 |
| Msa0134000 | AT5G62100.5 | 57.767 | 206 | 77 | 2 | 1 | 206 | 1 | 196 | 2.45e-79 | 241 |
| Msa0134000 | AT5G62100.4 | 57.005 | 207 | 79 | 2 | 1 | 207 | 1 | 197 | 8.86e-79 | 240 |
| Msa0134000 | AT5G62100.3 | 56.962 | 158 | 58 | 2 | 1 | 158 | 1 | 148 | 7.54e-58 | 184 |
| Msa0134000 | AT5G62100.6 | 56.962 | 158 | 58 | 2 | 1 | 158 | 1 | 148 | 7.54e-58 | 184 |
| Msa0134000 | AT3G51780.1 | 40.367 | 218 | 113 | 3 | 22 | 225 | 10 | 224 | 8.05e-45 | 154 |
| Msa0134000 | AT5G14360.1 | 37.273 | 110 | 64 | 1 | 21 | 130 | 47 | 151 | 1.13e-21 | 90.5 |
| Msa0134000 | AT5G40630.1 | 35.455 | 110 | 68 | 2 | 21 | 130 | 55 | 161 | 2.67e-20 | 86.7 |
Find 112 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAATACATTTGATATTT+TGG | 0.031025 | 1_3:-65403583 | Msa0134000:three_prime_UTR |
| ATTAGAGTTAAGGTTAAATT+TGG | 0.209267 | 1_3:-65405927 | Msa0134000:CDS |
| ACCGGTGCCGGAAAAGTTTA+TGG | 0.223086 | 1_3:+65406350 | None:intergenic |
| TTTACATCATCGGCAATAAA+TGG | 0.236093 | 1_3:-65403664 | Msa0134000:three_prime_UTR |
| GTGATTGTGTGGATGTGTTT+TGG | 0.245466 | 1_3:-65403775 | Msa0134000:three_prime_UTR |
| TCCAAAATATCAAATGTATT+TGG | 0.249866 | 1_3:+65403582 | None:intergenic |
| CAAAGATCTACATCTTGTTT+TGG | 0.296970 | 1_3:-65406105 | Msa0134000:five_prime_UTR |
| TCATAAATTACAACCAAGTT+TGG | 0.308165 | 1_3:-65404030 | Msa0134000:CDS |
| AAGTTGTAGTTACTACAAAA+TGG | 0.317039 | 1_3:-65403923 | Msa0134000:CDS |
| CAACTAGAAGGCATGTCTAT+TGG | 0.328595 | 1_3:-65404056 | Msa0134000:CDS |
| ATAAATGGGGTTGCTATGAT+AGG | 0.340960 | 1_3:-65403649 | Msa0134000:three_prime_UTR |
| AAAATGTTAACCGGTCCAAC+TGG | 0.346168 | 1_3:-65405607 | Msa0134000:CDS |
| CTGAAAATTAAGAATTCTAA+TGG | 0.350736 | 1_3:-65404137 | Msa0134000:CDS |
| TTGGAAGTAGATAGGCTTGC+AGG | 0.354563 | 1_3:-65405388 | Msa0134000:CDS |
| CGAGTCTCGATCCGAGTCTA+AGG | 0.358675 | 1_3:+65405965 | None:intergenic |
| GAAAGTACAGAAAATCAAAA+TGG | 0.359392 | 1_3:+65406658 | None:intergenic |
| GCTGAAGTGACAGGAATTAA+TGG | 0.377943 | 1_3:+65403879 | None:intergenic |
| AACTAGAAGGCATGTCTATT+GGG | 0.380751 | 1_3:-65404055 | Msa0134000:CDS |
| CCTTCTAGTTGCTCATCAAT+TGG | 0.382641 | 1_3:+65404068 | None:intergenic |
| CAGTTCATCCCAAGTTCAAA+TGG | 0.385056 | 1_3:-65403827 | Msa0134000:CDS |
| AAGGCATTTCTTGACATAGT+AGG | 0.386721 | 1_3:-65405532 | Msa0134000:CDS |
| AAAGATCGCCGGACGGTAAC+CGG | 0.396327 | 1_3:+65406332 | None:intergenic |
| CCACTCCAAACCTCTAGGTT+CGG | 0.402186 | 1_3:+65406025 | None:intergenic |
| TCCACCGACAATTAGAGTTA+AGG | 0.402326 | 1_3:-65405937 | Msa0134000:CDS |
| TTACATCATCGGCAATAAAT+GGG | 0.403982 | 1_3:-65403663 | Msa0134000:three_prime_UTR |
| AGTAGATAGGCTTGCAGGGC+AGG | 0.406809 | 1_3:-65405383 | Msa0134000:intron |
| TACCTCTTCTCTTGAGCAAT+AGG | 0.407029 | 1_3:+65405472 | None:intergenic |
| ATTAGTTCACAAGCAACATT+TGG | 0.407228 | 1_3:-65405882 | Msa0134000:intron |
| GGTTCCCGAACCTAGAGGTT+TGG | 0.408188 | 1_3:-65406030 | Msa0134000:CDS |
| ACAAAAGTATGTTGAAACTT+TGG | 0.410750 | 1_3:-65404165 | Msa0134000:CDS |
| AAATTAGCTTGGAAGTAGAT+AGG | 0.412929 | 1_3:-65405396 | Msa0134000:CDS |
| CGCCGGACGGTAACCGGTGC+CGG | 0.420991 | 1_3:+65406338 | None:intergenic |
| GAAGTGTTCCCATTTGAACT+TGG | 0.421460 | 1_3:+65403818 | None:intergenic |
| CCAATTGATGAGCAACTAGA+AGG | 0.428546 | 1_3:-65404068 | Msa0134000:CDS |
| TTAGAGGAATCAATGGCGTT+TGG | 0.433140 | 1_3:+65406270 | None:intergenic |
| TAAAGATAAATCAAAGTTAG+TGG | 0.440071 | 1_3:-65405506 | Msa0134000:CDS |
| GATGTAAATGACAGACTAAA+GGG | 0.444896 | 1_3:+65403679 | None:intergenic |
| AAGAACGTGACGAATCATAA+TGG | 0.447206 | 1_3:-65406059 | Msa0134000:CDS |
| TGTGATTGTTGCTCCAAACT+TGG | 0.451240 | 1_3:+65404017 | None:intergenic |
| CACTCCAAACCTCTAGGTTC+GGG | 0.452343 | 1_3:+65406026 | None:intergenic |
| TAAATCAAAGTTAGTGGTGA+TGG | 0.454330 | 1_3:-65405500 | Msa0134000:CDS |
| GATGAGACCAGGAGGCTTGT+TGG | 0.454427 | 1_3:-65406000 | Msa0134000:CDS |
| CTCTGTTCTGGAGGAATCGA+TGG | 0.460753 | 1_3:+65406621 | None:intergenic |
| GCTTAAGTTGGATGGTATAG+TGG | 0.470152 | 1_3:-65405185 | Msa0134000:CDS |
| ATCTATTTCAGAAATTAGCT+TGG | 0.470708 | 1_3:-65405407 | Msa0134000:CDS |
| TTAACCTTAACTCTAATTGT+CGG | 0.472025 | 1_3:+65405933 | None:intergenic |
| TGCTCAAGAGAAGAGGTACT+TGG | 0.472792 | 1_3:-65405467 | Msa0134000:CDS |
| TAGTCTGTCATTTACATCAT+CGG | 0.489273 | 1_3:-65403674 | Msa0134000:three_prime_UTR |
| GATGAATCAGTTGCTTAAGT+TGG | 0.489833 | 1_3:-65405197 | Msa0134000:CDS |
| AGTTGTAGTTACTACAAAAT+GGG | 0.490238 | 1_3:-65403922 | Msa0134000:CDS |
| TTCCGGCACCGGTTACCGTC+CGG | 0.491128 | 1_3:-65406340 | Msa0134000:five_prime_UTR |
| CAATCACAAAGGAACTCAAA+CGG | 0.493312 | 1_3:-65404002 | Msa0134000:CDS |
| GGGATGAACTGAATTATTAG+TGG | 0.493980 | 1_3:+65403839 | None:intergenic |
| GTACTATGAAGCAAAATGTA+TGG | 0.496289 | 1_3:+65406450 | None:intergenic |
| AATCACAAAGGAACTCAAAC+GGG | 0.496767 | 1_3:-65404001 | Msa0134000:CDS |
| CGTTGAACCAACAAGCCTCC+TGG | 0.506657 | 1_3:+65405993 | None:intergenic |
| AAGTGTTCCCATTTGAACTT+GGG | 0.507977 | 1_3:+65403819 | None:intergenic |
| GACGAATCATAATGGAGGTT+CGG | 0.509154 | 1_3:-65406051 | Msa0134000:CDS |
| AGTTCATCCCAAGTTCAAAT+GGG | 0.515662 | 1_3:-65403826 | Msa0134000:CDS |
| ACTAATGTTGACTTCATGAT+AGG | 0.516375 | 1_3:+65405899 | None:intergenic |
| GTGGTGTATCCCAGTTGGAC+CGG | 0.518541 | 1_3:+65405597 | None:intergenic |
| AATCAGTTGCTTAAGTTGGA+TGG | 0.521756 | 1_3:-65405193 | Msa0134000:CDS |
| TGGATGGTATAGTGGCTGAT+GGG | 0.523352 | 1_3:-65405177 | Msa0134000:CDS |
| AAAATATCAAATGTATTTGG+AGG | 0.525365 | 1_3:+65403585 | None:intergenic |
| TCTAGTTGCTCATCAATTGG+AGG | 0.528067 | 1_3:+65404071 | None:intergenic |
| GAATTGAAGAAAATGTTAAC+CGG | 0.528236 | 1_3:-65405616 | Msa0134000:CDS |
| CTCGATCCGAGTCTAAGGTT+CGG | 0.528564 | 1_3:+65405970 | None:intergenic |
| TGATGTAAATGACAGACTAA+AGG | 0.528805 | 1_3:+65403678 | None:intergenic |
| CTCGAAACAATAATTAGTAA+AGG | 0.528826 | 1_3:-65405265 | Msa0134000:CDS |
| TAATATGAGATATGAGATAG+AGG | 0.530055 | 1_3:+65406504 | None:intergenic |
| CCGAACCTAGAGGTTTGGAG+TGG | 0.531731 | 1_3:-65406025 | Msa0134000:CDS |
| GTGCAGTGTTTGTGATTGTG+TGG | 0.533061 | 1_3:-65403786 | Msa0134000:three_prime_UTR |
| ACCTTAACTCTAATTGTCGG+TGG | 0.538745 | 1_3:+65405936 | None:intergenic |
| CTTAGACTCGGATCGAGACT+CGG | 0.539623 | 1_3:-65405964 | Msa0134000:CDS |
| TGGATTTATACGTGAGTAGG+AGG | 0.542356 | 1_3:+65406470 | None:intergenic |
| AAACAAGGAGAGGGATTCAA+AGG | 0.544060 | 1_3:-65405551 | Msa0134000:CDS |
| TTGGAGTGGGAGATGAGACC+AGG | 0.544656 | 1_3:-65406011 | Msa0134000:CDS |
| TCTTGGTGGTGTATCCCAGT+TGG | 0.549913 | 1_3:+65405592 | None:intergenic |
| GATGAGGATGCTGAAGTGAC+AGG | 0.550910 | 1_3:+65403870 | None:intergenic |
| TAAATGGGGTTGCTATGATA+GGG | 0.551338 | 1_3:-65403648 | Msa0134000:three_prime_UTR |
| GAAACAATAATTAGTAAAGG+TGG | 0.554611 | 1_3:-65405262 | Msa0134000:CDS |
| TGGAAGTAGATAGGCTTGCA+GGG | 0.562410 | 1_3:-65405387 | Msa0134000:CDS |
| AAACAATAATTAGTAAAGGT+GGG | 0.565385 | 1_3:-65405261 | Msa0134000:CDS |
| AGGATGGCAGCATAGTTAGC+TGG | 0.566058 | 1_3:-65406703 | Msa0134000:five_prime_UTR |
| TTGGATGGTATAGTGGCTGA+TGG | 0.567402 | 1_3:-65405178 | Msa0134000:CDS |
| AAATATAATAACACTCCAAG+TGG | 0.573455 | 1_3:+65403743 | None:intergenic |
| GGATGGTATAGTGGCTGATG+GGG | 0.575853 | 1_3:-65405176 | Msa0134000:CDS |
| AAAATCTGAAATAATTTGGG+AGG | 0.577119 | 1_3:+65406528 | None:intergenic |
| ATCTCCCACTCCAAACCTCT+AGG | 0.584464 | 1_3:+65406020 | None:intergenic |
| GTATGGATTTATACGTGAGT+AGG | 0.587242 | 1_3:+65406467 | None:intergenic |
| TAAATTGCAGAGGAAAATGC+AGG | 0.597959 | 1_3:-65405149 | Msa0134000:intron |
| ATCAAAGTTAGTGGTGATGG+AGG | 0.599290 | 1_3:-65405497 | Msa0134000:CDS |
| AATGTTGACTTCATGATAGG+TGG | 0.604883 | 1_3:+65405902 | None:intergenic |
| TCTGAGGTAGAATTCGTAGA+GGG | 0.608688 | 1_3:+65403945 | None:intergenic |
| ATCCTATTGCTCAAGAGAAG+AGG | 0.610825 | 1_3:-65405474 | Msa0134000:CDS |
| AAATCTGAAATAATTTGGGA+GGG | 0.613371 | 1_3:+65406529 | None:intergenic |
| TACATCATCGGCAATAAATG+GGG | 0.614606 | 1_3:-65403662 | Msa0134000:three_prime_UTR |
| AAATGTTAACCGGTCCAACT+GGG | 0.615599 | 1_3:-65405606 | Msa0134000:CDS |
| TGTAGTAACTACAACTTCTG+AGG | 0.617406 | 1_3:+65403929 | None:intergenic |
| TTAACTCTAATTGTCGGTGG+AGG | 0.619157 | 1_3:+65405939 | None:intergenic |
| GGTTCGGTTCCCGAACCTAG+AGG | 0.622759 | 1_3:-65406035 | Msa0134000:CDS |
| CGAACCTAGAGGTTTGGAGT+GGG | 0.637249 | 1_3:-65406024 | Msa0134000:CDS |
| AAAATTAAGAATTCTAATGG+AGG | 0.640605 | 1_3:-65404134 | Msa0134000:CDS |
| ATGGGGATGTTAAATTGCAG+AGG | 0.645911 | 1_3:-65405159 | Msa0134000:CDS |
| TGTATAAGAAGAGATTTGGG+TGG | 0.649734 | 1_3:-65406149 | Msa0134000:five_prime_UTR |
| TTCTGAGGTAGAATTCGTAG+AGG | 0.661653 | 1_3:+65403944 | None:intergenic |
| ATTAGTGGATGAGCTTGATG+AGG | 0.662225 | 1_3:+65403854 | None:intergenic |
| AACGTGACGAATCATAATGG+AGG | 0.690876 | 1_3:-65406056 | Msa0134000:CDS |
| TCAACGCCGAACCTTAGACT+CGG | 0.694481 | 1_3:-65405976 | Msa0134000:CDS |
| GAGTGGGAGATGAGACCAGG+AGG | 0.701762 | 1_3:-65406008 | Msa0134000:CDS |
| GTTTGGAGCAACAATCACAA+AGG | 0.714476 | 1_3:-65404013 | Msa0134000:CDS |
| GAAGTGACAGGAATTAATGG+TGG | 0.757122 | 1_3:+65403882 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAATAAAA+GGG | + | chr1_3:65404363-65404382 | None:intergenic | 0.0% |
| !! | ATAATAATAATAATAATAAA+AGG | + | chr1_3:65404364-65404383 | None:intergenic | 0.0% |
| !! | ATAATAATAATAATAAAAGG+GGG | + | chr1_3:65404361-65404380 | None:intergenic | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | - | chr1_3:65405394-65405413 | Msa0134000:CDS | 10.0% |
| !! | ATTAATAAAATTAGATGTTA+GGG | + | chr1_3:65405519-65405538 | None:intergenic | 10.0% |
| !! | TAAAATTAAGTCATTTAAAA+TGG | + | chr1_3:65405618-65405637 | None:intergenic | 10.0% |
| !! | TAATAATAATAATAAAAGGG+GGG | + | chr1_3:65404360-65404379 | None:intergenic | 15.0% |
| !!! | TATAAAATATTTTTTGGTCT+TGG | + | chr1_3:65404632-65404651 | None:intergenic | 15.0% |
| !! | AATGAGAAAAAATATAAAGA+TGG | - | chr1_3:65404761-65404780 | Msa0134000:intron | 15.0% |
| !! | AAAAAATATAAAGATGGAAA+GGG | - | chr1_3:65404767-65404786 | Msa0134000:intron | 15.0% |
| !!! | TTTTTTTTTTATGATAAGGT+TGG | - | chr1_3:65404848-65404867 | Msa0134000:intron | 15.0% |
| !! | ATATTTAATGCTTGAATAAT+TGG | - | chr1_3:65404876-65404895 | Msa0134000:intron | 15.0% |
| !! | AAAAATTATGACATCTAATT+TGG | - | chr1_3:65405185-65405204 | Msa0134000:CDS | 15.0% |
| !! | TATACATTAGTAAAAAAGTA+TGG | + | chr1_3:65405290-65405309 | None:intergenic | 15.0% |
| !! | CATTAATAAAATTAGATGTT+AGG | + | chr1_3:65405520-65405539 | None:intergenic | 15.0% |
| !!! | ACATTCATTAATGATTTTAT+TGG | - | chr1_3:65405959-65405978 | Msa0134000:CDS | 15.0% |
| !! | AAAAACAAATTCCTCATTAT+TGG | - | chr1_3:65403608-65403627 | Msa0134000:three_prime_UTR | 20.0% |
| !! | AAAAAACAATTCCAATAATG+AGG | + | chr1_3:65403622-65403641 | None:intergenic | 20.0% |
| !!! | GGAAAAATCTGAAATAATTT+GGG | + | chr1_3:65403682-65403701 | None:intergenic | 20.0% |
| !!! | AGGAAAAATCTGAAATAATT+TGG | + | chr1_3:65403683-65403702 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCATAAACTTTTC+CGG | - | chr1_3:65403847-65403866 | Msa0134000:CDS | 20.0% |
| !! | GAAAACAAAGAAAAAAACAA+AGG | + | chr1_3:65403998-65404017 | None:intergenic | 20.0% |
| !!! | TTTTTGTATAAGAAGAGATT+TGG | - | chr1_3:65404051-65404070 | Msa0134000:CDS | 20.0% |
| !!! | TTTTGTATAAGAAGAGATTT+GGG | - | chr1_3:65404052-65404071 | Msa0134000:CDS | 20.0% |
| !! | ATTAGAGTTAAGGTTAAATT+TGG | - | chr1_3:65404277-65404296 | Msa0134000:intron | 20.0% |
| !! | AATAATAATAATAAAAGGGG+GGG | + | chr1_3:65404359-65404378 | None:intergenic | 20.0% |
| !! | GATTGAATAAATCATTTATC+TGG | - | chr1_3:65404467-65404486 | Msa0134000:intron | 20.0% |
| !! | AAAAATCAATCATTCGATAT+AGG | + | chr1_3:65404514-65404533 | None:intergenic | 20.0% |
| !!! | TATTTTATAAAAACAAGGAG+AGG | - | chr1_3:65404643-65404662 | Msa0134000:intron | 20.0% |
| !!! | ATTTTATAAAAACAAGGAGA+GGG | - | chr1_3:65404644-65404663 | Msa0134000:intron | 20.0% |
| !! | TAAAGATAAATCAAAGTTAG+TGG | - | chr1_3:65404698-65404717 | Msa0134000:intron | 20.0% |
| !! | GAAAAAATATAAAGATGGAA+AGG | - | chr1_3:65404766-65404785 | Msa0134000:intron | 20.0% |
| !! | AAACAATAATTAGTAAAGGT+GGG | - | chr1_3:65404943-65404962 | Msa0134000:intron | 20.0% |
| !!! | TTAAGTCATTTAAAATGGAA+CGG | + | chr1_3:65405613-65405632 | None:intergenic | 20.0% |
| !! | AATTATAGCATATAAGATGT+TGG | - | chr1_3:65405698-65405717 | Msa0134000:intron | 20.0% |
| !!! | ATGGTAGTTAATAATTTTGA+AGG | - | chr1_3:65406006-65406025 | Msa0134000:CDS | 20.0% |
| !! | CTGAAAATTAAGAATTCTAA+TGG | - | chr1_3:65406067-65406086 | Msa0134000:CDS | 20.0% |
| !! | AAAATTAAGAATTCTAATGG+AGG | - | chr1_3:65406070-65406089 | Msa0134000:CDS | 20.0% |
| !! | AAAATATCAAATGTATTTGG+AGG | + | chr1_3:65406622-65406641 | None:intergenic | 20.0% |
| !!! | TCCAAATACATTTGATATTT+TGG | - | chr1_3:65406621-65406640 | Msa0134000:five_prime_UTR | 20.0% |
| !! | TCCAAAATATCAAATGTATT+TGG | + | chr1_3:65406625-65406644 | None:intergenic | 20.0% |
| ! | GAAATGAATATAAAAACGTG+TGG | + | chr1_3:65403527-65403546 | None:intergenic | 25.0% |
| !! | GAAAGTACAGAAAATCAAAA+TGG | + | chr1_3:65403549-65403568 | None:intergenic | 25.0% |
| ! | GAATGTGAAGTCAAAAAAAT+AGG | + | chr1_3:65403649-65403668 | None:intergenic | 25.0% |
| !! | AAATCTGAAATAATTTGGGA+GGG | + | chr1_3:65403678-65403697 | None:intergenic | 25.0% |
| !! | AAAATCTGAAATAATTTGGG+AGG | + | chr1_3:65403679-65403698 | None:intergenic | 25.0% |
| ! | TAATATGAGATATGAGATAG+AGG | + | chr1_3:65403703-65403722 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTTGTTTTCGTG+TGG | - | chr1_3:65404001-65404020 | Msa0134000:CDS | 25.0% |
| ! | TTAACCTTAACTCTAATTGT+CGG | + | chr1_3:65404274-65404293 | None:intergenic | 25.0% |
| !! | CTTTCTCATTGATTAATGTT+TGG | - | chr1_3:65404555-65404574 | Msa0134000:intron | 25.0% |
| ! | GAATTGAAGAAAATGTTAAC+CGG | - | chr1_3:65404588-65404607 | Msa0134000:intron | 25.0% |
| !!! | AAAATATTTTTTGGTCTTGG+TGG | + | chr1_3:65404629-65404648 | None:intergenic | 25.0% |
| ! | ATCTATTTCAGAAATTAGCT+TGG | - | chr1_3:65404797-65404816 | Msa0134000:intron | 25.0% |
| ! | ATGATATGAATTGCTTGATT+AGG | - | chr1_3:65404908-65404927 | Msa0134000:intron | 25.0% |
| ! | CTCGAAACAATAATTAGTAA+AGG | - | chr1_3:65404939-65404958 | Msa0134000:intron | 25.0% |
| ! | GAAACAATAATTAGTAAAGG+TGG | - | chr1_3:65404942-65404961 | Msa0134000:intron | 25.0% |
| ! | TCAATTTAAGAGGAAATCTA+AGG | + | chr1_3:65405132-65405151 | None:intergenic | 25.0% |
| !!! | CACTCTAAAATCAATTTAAG+AGG | + | chr1_3:65405142-65405161 | None:intergenic | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | + | chr1_3:65405231-65405250 | None:intergenic | 25.0% |
| ! | TTTATTAATGTGTCCACTTT+AGG | - | chr1_3:65405530-65405549 | Msa0134000:CDS | 25.0% |
| ! | GATACTTAAGATCAAAATTG+TGG | - | chr1_3:65405778-65405797 | Msa0134000:intron | 25.0% |
| ! | TCAACTGTGTCATATAATAT+AGG | - | chr1_3:65405820-65405839 | Msa0134000:intron | 25.0% |
| ! | TAGTACATTATTGCTTCTAA+TGG | - | chr1_3:65405987-65406006 | Msa0134000:CDS | 25.0% |
| !! | ACAAAAGTATGTTGAAACTT+TGG | - | chr1_3:65406039-65406058 | Msa0134000:CDS | 25.0% |
| ! | TCATAAATTACAACCAAGTT+TGG | - | chr1_3:65406174-65406193 | Msa0134000:five_prime_UTR | 25.0% |
| ! | AAGTTGTAGTTACTACAAAA+TGG | - | chr1_3:65406281-65406300 | Msa0134000:five_prime_UTR | 25.0% |
| ! | AGTTGTAGTTACTACAAAAT+GGG | - | chr1_3:65406282-65406301 | Msa0134000:five_prime_UTR | 25.0% |
| ! | AAATATAATAACACTCCAAG+TGG | + | chr1_3:65406464-65406483 | None:intergenic | 25.0% |
| !! | ATTTGTTTTTCTCTCTGTTC+TGG | + | chr1_3:65403598-65403617 | None:intergenic | 30.0% |
| GTACTATGAAGCAAAATGTA+TGG | + | chr1_3:65403757-65403776 | None:intergenic | 30.0% | |
| ! | TCAGTACTTTCAGATTTTAC+AGG | - | chr1_3:65403787-65403806 | Msa0134000:three_prime_UTR | 30.0% |
| !!! | TCCTTTTTTAGAGGAATCAA+TGG | + | chr1_3:65403944-65403963 | None:intergenic | 30.0% |
| !!! | TCAGCTTTTTCCTTTTTTAG+AGG | + | chr1_3:65403953-65403972 | None:intergenic | 30.0% |
| !!! | AAGCTGAAACAAAGCTTTTT+TGG | - | chr1_3:65403966-65403985 | Msa0134000:CDS | 30.0% |
| !! | CAAAGATCTACATCTTGTTT+TGG | - | chr1_3:65404099-65404118 | Msa0134000:CDS | 30.0% |
| !! | ACTAATGTTGACTTCATGAT+AGG | + | chr1_3:65404308-65404327 | None:intergenic | 30.0% |
| ATTAGTTCACAAGCAACATT+TGG | - | chr1_3:65404322-65404341 | Msa0134000:intron | 30.0% | |
| !! | TGATTAATGTTTGGTGTCAT+AGG | - | chr1_3:65404564-65404583 | Msa0134000:intron | 30.0% |
| !! | GATTAATGTTTGGTGTCATA+GGG | - | chr1_3:65404565-65404584 | Msa0134000:intron | 30.0% |
| !! | ATTAATGTTTGGTGTCATAG+GGG | - | chr1_3:65404566-65404585 | Msa0134000:intron | 30.0% |
| TAAATCAAAGTTAGTGGTGA+TGG | - | chr1_3:65404704-65404723 | Msa0134000:intron | 30.0% | |
| ! | AAATTAGCTTGGAAGTAGAT+AGG | - | chr1_3:65404808-65404827 | Msa0134000:intron | 30.0% |
| ATAGTGCACATTGCAAAAAT+TGG | + | chr1_3:65405249-65405268 | None:intergenic | 30.0% | |
| !!! | GACATGTATTTTGAAACAGA+GGG | - | chr1_3:65405456-65405475 | Msa0134000:CDS | 30.0% |
| TGTCATATAATATAGGACGA+CGG | - | chr1_3:65405827-65405846 | Msa0134000:intron | 30.0% | |
| !! | TTTGTTGAGGCTTTTTCTTT+GGG | + | chr1_3:65406102-65406121 | None:intergenic | 30.0% |
| !! | TTTTGTTGAGGCTTTTTCTT+TGG | + | chr1_3:65406103-65406122 | None:intergenic | 30.0% |
| !!! | GGCAATTTTACTTTTTGTTG+AGG | + | chr1_3:65406115-65406134 | None:intergenic | 30.0% |
| GATGTAAATGACAGACTAAA+GGG | + | chr1_3:65406528-65406547 | None:intergenic | 30.0% | |
| TGATGTAAATGACAGACTAA+AGG | + | chr1_3:65406529-65406548 | None:intergenic | 30.0% | |
| ! | TAGTCTGTCATTTACATCAT+CGG | - | chr1_3:65406530-65406549 | Msa0134000:five_prime_UTR | 30.0% |
| TTTACATCATCGGCAATAAA+TGG | - | chr1_3:65406540-65406559 | Msa0134000:five_prime_UTR | 30.0% | |
| TTACATCATCGGCAATAAAT+GGG | - | chr1_3:65406541-65406560 | Msa0134000:five_prime_UTR | 30.0% | |
| GTATGGATTTATACGTGAGT+AGG | + | chr1_3:65403740-65403759 | None:intergenic | 35.0% | |
| !!! | TTCTTTTTTGTGGTTCACGT+TGG | - | chr1_3:65403893-65403912 | Msa0134000:CDS | 35.0% |
| !!! | TCTTTTTTGTGGTTCACGTT+GGG | - | chr1_3:65403894-65403913 | Msa0134000:CDS | 35.0% |
| !! | GCCATTGATTCCTCTAAAAA+AGG | - | chr1_3:65403940-65403959 | Msa0134000:CDS | 35.0% |
| !!! | TTCTTTGTTTTCGTGTGGAT+TGG | - | chr1_3:65404006-65404025 | Msa0134000:CDS | 35.0% |
| TGTATAAGAAGAGATTTGGG+TGG | - | chr1_3:65404055-65404074 | Msa0134000:CDS | 35.0% | |
| AAGAACGTGACGAATCATAA+TGG | - | chr1_3:65404145-65404164 | Msa0134000:CDS | 35.0% | |
| !! | AATGTTGACTTCATGATAGG+TGG | + | chr1_3:65404305-65404324 | None:intergenic | 35.0% |
| ! | AAGGCATTTCTTGACATAGT+AGG | - | chr1_3:65404672-65404691 | Msa0134000:intron | 35.0% |
| GATGAATCAGTTGCTTAAGT+TGG | - | chr1_3:65405007-65405026 | Msa0134000:intron | 35.0% | |
| !! | AATCAGTTGCTTAAGTTGGA+TGG | - | chr1_3:65405011-65405030 | Msa0134000:intron | 35.0% |
| TAAATTGCAGAGGAAAATGC+AGG | - | chr1_3:65405055-65405074 | Msa0134000:intron | 35.0% | |
| !!! | GACATGTATTTTGAAACGGA+GGG | + | chr1_3:65405227-65405246 | None:intergenic | 35.0% |
| !!! | GGACATGTATTTTGAAACAG+AGG | - | chr1_3:65405455-65405474 | Msa0134000:CDS | 35.0% |
| AACATTTAGTCCCGGAAAAA+CGG | - | chr1_3:65405482-65405501 | Msa0134000:CDS | 35.0% | |
| !! | ACTAAGTTATCCCGTTTTTC+CGG | + | chr1_3:65405496-65405515 | None:intergenic | 35.0% |
| ATATAATATAGGACGACGGA+GGG | - | chr1_3:65405831-65405850 | Msa0134000:intron | 35.0% | |
| ! | AACTAGAAGGCATGTCTATT+GGG | - | chr1_3:65406149-65406168 | Msa0134000:five_prime_UTR | 35.0% |
| CAATCACAAAGGAACTCAAA+CGG | - | chr1_3:65406202-65406221 | Msa0134000:five_prime_UTR | 35.0% | |
| AATCACAAAGGAACTCAAAC+GGG | - | chr1_3:65406203-65406222 | Msa0134000:five_prime_UTR | 35.0% | |
| TGTAGTAACTACAACTTCTG+AGG | + | chr1_3:65406278-65406297 | None:intergenic | 35.0% | |
| GGGATGAACTGAATTATTAG+TGG | + | chr1_3:65406368-65406387 | None:intergenic | 35.0% | |
| AGTTCATCCCAAGTTCAAAT+GGG | - | chr1_3:65406378-65406397 | Msa0134000:five_prime_UTR | 35.0% | |
| AAGTGTTCCCATTTGAACTT+GGG | + | chr1_3:65406388-65406407 | None:intergenic | 35.0% | |
| ! | TGATTGTGTGGATGTGTTTT+GGG | - | chr1_3:65406430-65406449 | Msa0134000:five_prime_UTR | 35.0% |
| !!! | TTTTGGGTTTGTTTTCCACT+TGG | - | chr1_3:65406446-65406465 | Msa0134000:five_prime_UTR | 35.0% |
| TACATCATCGGCAATAAATG+GGG | - | chr1_3:65406542-65406561 | Msa0134000:five_prime_UTR | 35.0% | |
| ATAAATGGGGTTGCTATGAT+AGG | - | chr1_3:65406555-65406574 | Msa0134000:five_prime_UTR | 35.0% | |
| TAAATGGGGTTGCTATGATA+GGG | - | chr1_3:65406556-65406575 | Msa0134000:five_prime_UTR | 35.0% | |
| ! | TGTTTTTCTCTCTGTTCTGG+AGG | + | chr1_3:65403595-65403614 | None:intergenic | 40.0% |
| TGGATTTATACGTGAGTAGG+AGG | + | chr1_3:65403737-65403756 | None:intergenic | 40.0% | |
| AAAAAAGAAAGATCGCCGGA+CGG | + | chr1_3:65403882-65403901 | None:intergenic | 40.0% | |
| CCACAAAAAAGAAAGATCGC+CGG | + | chr1_3:65403886-65403905 | None:intergenic | 40.0% | |
| TTAGAGGAATCAATGGCGTT+TGG | + | chr1_3:65403937-65403956 | None:intergenic | 40.0% | |
| AACGTGACGAATCATAATGG+AGG | - | chr1_3:65404148-65404167 | Msa0134000:CDS | 40.0% | |
| ! | GACGAATCATAATGGAGGTT+CGG | - | chr1_3:65404153-65404172 | Msa0134000:CDS | 40.0% |
| TTAACTCTAATTGTCGGTGG+AGG | + | chr1_3:65404268-65404287 | None:intergenic | 40.0% | |
| TCCACCGACAATTAGAGTTA+AGG | - | chr1_3:65404267-65404286 | Msa0134000:intron | 40.0% | |
| ACCTTAACTCTAATTGTCGG+TGG | + | chr1_3:65404271-65404290 | None:intergenic | 40.0% | |
| AAAATGTTAACCGGTCCAAC+TGG | - | chr1_3:65404597-65404616 | Msa0134000:intron | 40.0% | |
| AAATGTTAACCGGTCCAACT+GGG | - | chr1_3:65404598-65404617 | Msa0134000:intron | 40.0% | |
| AAACAAGGAGAGGGATTCAA+AGG | - | chr1_3:65404653-65404672 | Msa0134000:intron | 40.0% | |
| !! | ATCAAAGTTAGTGGTGATGG+AGG | - | chr1_3:65404707-65404726 | Msa0134000:intron | 40.0% |
| ATCCTATTGCTCAAGAGAAG+AGG | - | chr1_3:65404730-65404749 | Msa0134000:intron | 40.0% | |
| TACCTCTTCTCTTGAGCAAT+AGG | + | chr1_3:65404735-65404754 | None:intergenic | 40.0% | |
| !! | GCTTAAGTTGGATGGTATAG+TGG | - | chr1_3:65405019-65405038 | Msa0134000:intron | 40.0% |
| ATGGGGATGTTAAATTGCAG+AGG | - | chr1_3:65405045-65405064 | Msa0134000:intron | 40.0% | |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | chr1_3:65405228-65405247 | None:intergenic | 40.0% |
| ! | GTGCATTGACATATGTGAAG+TGG | - | chr1_3:65405425-65405444 | Msa0134000:CDS | 40.0% |
| CATATGTGAAGTGGTTGACT+TGG | - | chr1_3:65405434-65405453 | Msa0134000:CDS | 40.0% | |
| ACATTTAGTCCCGGAAAAAC+GGG | - | chr1_3:65405483-65405502 | Msa0134000:CDS | 40.0% | |
| !! | CTAAGTTATCCCGTTTTTCC+GGG | + | chr1_3:65405495-65405514 | None:intergenic | 40.0% |
| CATATAATATAGGACGACGG+AGG | - | chr1_3:65405830-65405849 | Msa0134000:intron | 40.0% | |
| TCTAGTTGCTCATCAATTGG+AGG | + | chr1_3:65406136-65406155 | None:intergenic | 40.0% | |
| ! | CCTTCTAGTTGCTCATCAAT+TGG | + | chr1_3:65406139-65406158 | None:intergenic | 40.0% |
| CCAATTGATGAGCAACTAGA+AGG | - | chr1_3:65406136-65406155 | Msa0134000:five_prime_UTR | 40.0% | |
| ! | CAACTAGAAGGCATGTCTAT+TGG | - | chr1_3:65406148-65406167 | Msa0134000:five_prime_UTR | 40.0% |
| TGTGATTGTTGCTCCAAACT+TGG | + | chr1_3:65406190-65406209 | None:intergenic | 40.0% | |
| ! | GTTTGGAGCAACAATCACAA+AGG | - | chr1_3:65406191-65406210 | Msa0134000:five_prime_UTR | 40.0% |
| ! | TCTGAGGTAGAATTCGTAGA+GGG | + | chr1_3:65406262-65406281 | None:intergenic | 40.0% |
| !! | TTCTGAGGTAGAATTCGTAG+AGG | + | chr1_3:65406263-65406282 | None:intergenic | 40.0% |
| GAAGTGACAGGAATTAATGG+TGG | + | chr1_3:65406325-65406344 | None:intergenic | 40.0% | |
| GCTGAAGTGACAGGAATTAA+TGG | + | chr1_3:65406328-65406347 | None:intergenic | 40.0% | |
| ! | ATTAGTGGATGAGCTTGATG+AGG | + | chr1_3:65406353-65406372 | None:intergenic | 40.0% |
| CAGTTCATCCCAAGTTCAAA+TGG | - | chr1_3:65406377-65406396 | Msa0134000:five_prime_UTR | 40.0% | |
| ! | GAAGTGTTCCCATTTGAACT+TGG | + | chr1_3:65406389-65406408 | None:intergenic | 40.0% |
| ! | GTGATTGTGTGGATGTGTTT+TGG | - | chr1_3:65406429-65406448 | Msa0134000:five_prime_UTR | 40.0% |
| ! | ACGTGAGTAGGAGGATTTTG+TGG | + | chr1_3:65403728-65403747 | None:intergenic | 45.0% |
| ! | TCCATAAACTTTTCCGGCAC+CGG | - | chr1_3:65403853-65403872 | Msa0134000:CDS | 45.0% |
| !!! | CCGGCGATCTTTCTTTTTTG+TGG | - | chr1_3:65403883-65403902 | Msa0134000:CDS | 45.0% |
| ! | TTTTGTGGTTCACGTTGGGT+TGG | - | chr1_3:65403898-65403917 | Msa0134000:CDS | 45.0% |
| !! | TGCTCAAGAGAAGAGGTACT+TGG | - | chr1_3:65404737-65404756 | Msa0134000:intron | 45.0% |
| TTGGAAGTAGATAGGCTTGC+AGG | - | chr1_3:65404816-65404835 | Msa0134000:intron | 45.0% | |
| TGGAAGTAGATAGGCTTGCA+GGG | - | chr1_3:65404817-65404836 | Msa0134000:intron | 45.0% | |
| TTGGATGGTATAGTGGCTGA+TGG | - | chr1_3:65405026-65405045 | Msa0134000:intron | 45.0% | |
| TGGATGGTATAGTGGCTGAT+GGG | - | chr1_3:65405027-65405046 | Msa0134000:intron | 45.0% | |
| GAGGGAGTAACATTTAGTCC+CGG | - | chr1_3:65405474-65405493 | Msa0134000:CDS | 45.0% | |
| TGTGTCCACTTTAGGTCACA+AGG | - | chr1_3:65405538-65405557 | Msa0134000:CDS | 45.0% | |
| GTGTCCACTTTAGGTCACAA+GGG | - | chr1_3:65405539-65405558 | Msa0134000:CDS | 45.0% | |
| TTGTCCCTTGTGACCTAAAG+TGG | + | chr1_3:65405546-65405565 | None:intergenic | 45.0% | |
| GTGCAGTGTTTGTGATTGTG+TGG | - | chr1_3:65406418-65406437 | Msa0134000:five_prime_UTR | 45.0% | |
| !! | AATAATAATAATAATAAAAG+GGG | + | chr1_3:65404362-65404381 | None:intergenic | 5.0% |
| !!! | TGTTTTTATAAAATATTTTT+TGG | + | chr1_3:65404638-65404657 | None:intergenic | 5.0% |
| !!! | AAAAATATTTTATAAAAACA+AGG | - | chr1_3:65404638-65404657 | Msa0134000:intron | 5.0% |
| !!! | TAATTTTTTTTTTTATGATA+AGG | - | chr1_3:65404844-65404863 | Msa0134000:intron | 5.0% |
| AGGATGGCAGCATAGTTAGC+TGG | - | chr1_3:65403501-65403520 | Msa0134000:three_prime_UTR | 50.0% | |
| !! | CTCTGTTCTGGAGGAATCGA+TGG | + | chr1_3:65403586-65403605 | None:intergenic | 50.0% |
| ! | ACCGGTGCCGGAAAAGTTTA+TGG | + | chr1_3:65403857-65403876 | None:intergenic | 50.0% |
| CACTCCAAACCTCTAGGTTC+GGG | + | chr1_3:65404181-65404200 | None:intergenic | 50.0% | |
| CCACTCCAAACCTCTAGGTT+CGG | + | chr1_3:65404182-65404201 | None:intergenic | 50.0% | |
| ! | CGAACCTAGAGGTTTGGAGT+GGG | - | chr1_3:65404180-65404199 | Msa0134000:intron | 50.0% |
| ATCTCCCACTCCAAACCTCT+AGG | + | chr1_3:65404187-65404206 | None:intergenic | 50.0% | |
| TCAACGCCGAACCTTAGACT+CGG | - | chr1_3:65404228-65404247 | Msa0134000:intron | 50.0% | |
| ! | CTCGATCCGAGTCTAAGGTT+CGG | + | chr1_3:65404237-65404256 | None:intergenic | 50.0% |
| CTTAGACTCGGATCGAGACT+CGG | - | chr1_3:65404240-65404259 | Msa0134000:intron | 50.0% | |
| !! | TCTTGGTGGTGTATCCCAGT+TGG | + | chr1_3:65404615-65404634 | None:intergenic | 50.0% |
| GGATGGTATAGTGGCTGATG+GGG | - | chr1_3:65405028-65405047 | Msa0134000:intron | 50.0% | |
| ! | TGTGGATTGACAGACGTGAC+AGG | - | chr1_3:65405796-65405815 | Msa0134000:intron | 50.0% |
| ! | GTGGATTGACAGACGTGACA+GGG | - | chr1_3:65405797-65405816 | Msa0134000:intron | 50.0% |
| GATGAGGATGCTGAAGTGAC+AGG | + | chr1_3:65406337-65406356 | None:intergenic | 50.0% | |
| AAAGATCGCCGGACGGTAAC+CGG | + | chr1_3:65403875-65403894 | None:intergenic | 55.0% | |
| GGTTCCCGAACCTAGAGGTT+TGG | - | chr1_3:65404174-65404193 | Msa0134000:CDS | 55.0% | |
| CCGAACCTAGAGGTTTGGAG+TGG | - | chr1_3:65404179-65404198 | Msa0134000:CDS | 55.0% | |
| TTGGAGTGGGAGATGAGACC+AGG | - | chr1_3:65404193-65404212 | Msa0134000:intron | 55.0% | |
| GATGAGACCAGGAGGCTTGT+TGG | - | chr1_3:65404204-65404223 | Msa0134000:intron | 55.0% | |
| CGTTGAACCAACAAGCCTCC+TGG | + | chr1_3:65404214-65404233 | None:intergenic | 55.0% | |
| CGAGTCTCGATCCGAGTCTA+AGG | + | chr1_3:65404242-65404261 | None:intergenic | 55.0% | |
| GTGGTGTATCCCAGTTGGAC+CGG | + | chr1_3:65404610-65404629 | None:intergenic | 55.0% | |
| AGTAGATAGGCTTGCAGGGC+AGG | - | chr1_3:65404821-65404840 | Msa0134000:intron | 55.0% | |
| ATATAGGACGACGGAGGGAG+TGG | - | chr1_3:65405836-65405855 | Msa0134000:intron | 55.0% | |
| ! | GGTTCGGTTCCCGAACCTAG+AGG | - | chr1_3:65404169-65404188 | Msa0134000:CDS | 60.0% |
| GAGTGGGAGATGAGACCAGG+AGG | - | chr1_3:65404196-65404215 | Msa0134000:intron | 60.0% | |
| !! | TTCCGGCACCGGTTACCGTC+CGG | - | chr1_3:65403864-65403883 | Msa0134000:CDS | 65.0% |
| CGCCGGACGGTAACCGGTGC+CGG | + | chr1_3:65403869-65403888 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 65403500 | 65406726 | 65403500 | ID=Msa0134000;Name=Msa0134000 |
| chr1_3 | mRNA | 65403500 | 65406726 | 65403500 | ID=Msa0134000-mRNA-1;Parent=Msa0134000;Name=Msa0134000-mRNA-1;_AED=0.18;_eAED=0.18;_QI=633|1|1|1|1|1|4|312|333 |
| chr1_3 | exon | 65403500 | 65404198 | 65403500 | ID=Msa0134000-mRNA-1:exon:22225;Parent=Msa0134000-mRNA-1 |
| chr1_3 | exon | 65405150 | 65405296 | 65405150 | ID=Msa0134000-mRNA-1:exon:22224;Parent=Msa0134000-mRNA-1 |
| chr1_3 | exon | 65405384 | 65405640 | 65405384 | ID=Msa0134000-mRNA-1:exon:22223;Parent=Msa0134000-mRNA-1 |
| chr1_3 | exon | 65405883 | 65406726 | 65405883 | ID=Msa0134000-mRNA-1:exon:22222;Parent=Msa0134000-mRNA-1 |
| chr1_3 | five_prime_UTR | 65406094 | 65406726 | 65406094 | ID=Msa0134000-mRNA-1:five_prime_utr;Parent=Msa0134000-mRNA-1 |
| chr1_3 | CDS | 65405883 | 65406093 | 65405883 | ID=Msa0134000-mRNA-1:cds;Parent=Msa0134000-mRNA-1 |
| chr1_3 | CDS | 65405384 | 65405640 | 65405384 | ID=Msa0134000-mRNA-1:cds;Parent=Msa0134000-mRNA-1 |
| chr1_3 | CDS | 65405150 | 65405296 | 65405150 | ID=Msa0134000-mRNA-1:cds;Parent=Msa0134000-mRNA-1 |
| chr1_3 | CDS | 65403812 | 65404198 | 65403812 | ID=Msa0134000-mRNA-1:cds;Parent=Msa0134000-mRNA-1 |
| chr1_3 | three_prime_UTR | 65403500 | 65403811 | 65403500 | ID=Msa0134000-mRNA-1:three_prime_utr;Parent=Msa0134000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
