Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181000 | sp|Q9LYP4|BAG3_ARATH | 51.471 | 340 | 121 | 9 | 1 | 333 | 1 | 303 | 1.24e-105 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181000 | G7IAQ7 | 98.799 | 333 | 4 | 0 | 1 | 333 | 1 | 333 | 0.0 | 675 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa0181000 | 0.839461 | 1.563074e-57 | -8.615850e-47 |
| Msa0011930 | Msa0181000 | 0.805409 | 1.353445e-49 | -8.615850e-47 |
| Msa0014570 | Msa0181000 | 0.811990 | 5.310948e-51 | -8.615850e-47 |
| Msa0022750 | Msa0181000 | -0.832990 | 6.896301e-56 | -8.615850e-47 |
| Msa0030280 | Msa0181000 | 0.825046 | 5.801795e-54 | -8.615850e-47 |
| Msa0032320 | Msa0181000 | 0.806129 | 9.554855e-50 | -8.615850e-47 |
| Msa0039250 | Msa0181000 | 0.859236 | 4.756066e-63 | -8.615850e-47 |
| Msa0039570 | Msa0181000 | 0.814738 | 1.322244e-51 | -8.615850e-47 |
| Msa0041690 | Msa0181000 | 0.803147 | 4.005034e-49 | -8.615850e-47 |
| Msa0052870 | Msa0181000 | 0.825684 | 4.097626e-54 | -8.615850e-47 |
| Msa0055070 | Msa0181000 | 0.835971 | 1.229874e-56 | -8.615850e-47 |
| Msa0057590 | Msa0181000 | 0.809688 | 1.672019e-50 | -8.615850e-47 |
| Msa0069600 | Msa0181000 | 0.851411 | 9.035056e-61 | -8.615850e-47 |
| Msa0070430 | Msa0181000 | 0.813080 | 3.067026e-51 | -8.615850e-47 |
| Msa0077880 | Msa0181000 | 0.817831 | 2.689085e-52 | -8.615850e-47 |
| Msa0101020 | Msa0181000 | 0.826978 | 2.015756e-54 | -8.615850e-47 |
| Msa0101880 | Msa0181000 | 0.828806 | 7.326218e-55 | -8.615850e-47 |
| Msa0108390 | Msa0181000 | 0.823485 | 1.350787e-53 | -8.615850e-47 |
| Msa0108870 | Msa0181000 | 0.803581 | 3.255339e-49 | -8.615850e-47 |
| Msa0116790 | Msa0181000 | 0.869166 | 3.794260e-66 | -8.615850e-47 |
| Msa0119320 | Msa0181000 | 0.832016 | 1.202105e-55 | -8.615850e-47 |
| Msa0123510 | Msa0181000 | 0.803821 | 2.903549e-49 | -8.615850e-47 |
| Msa0133720 | Msa0181000 | 0.850801 | 1.342217e-60 | -8.615850e-47 |
| Msa0133820 | Msa0181000 | 0.845129 | 4.923588e-59 | -8.615850e-47 |
| Msa0134000 | Msa0181000 | 0.968157 | 2.797432e-128 | -8.615850e-47 |
| Msa0138360 | Msa0181000 | 0.830179 | 3.398133e-55 | -8.615850e-47 |
| Msa0145110 | Msa0181000 | 0.833301 | 5.770000e-56 | -8.615850e-47 |
| Msa0147980 | Msa0181000 | 0.851379 | 9.222169e-61 | -8.615850e-47 |
| Msa0154440 | Msa0181000 | 0.824245 | 8.959097e-54 | -8.615850e-47 |
| Msa0165440 | Msa0181000 | 0.807735 | 4.371370e-50 | -8.615850e-47 |
| Msa0181000 | Msa0181230 | 0.856183 | 3.821704e-62 | -8.615850e-47 |
| Msa0181000 | Msa0192640 | 0.801480 | 8.826165e-49 | -8.615850e-47 |
| Msa0181000 | Msa0193540 | 0.805886 | 1.074866e-49 | -8.615850e-47 |
| Msa0181000 | Msa0196340 | 0.809122 | 2.211540e-50 | -8.615850e-47 |
| Msa0181000 | Msa0198520 | 0.804836 | 1.784098e-49 | -8.615850e-47 |
| Msa0181000 | Msa0198530 | 0.805483 | 1.305951e-49 | -8.615850e-47 |
| Msa0181000 | Msa0207350 | 0.803857 | 2.853056e-49 | -8.615850e-47 |
| Msa0181000 | Msa0230370 | 0.837700 | 4.453597e-57 | -8.615850e-47 |
| Msa0181000 | Msa0238230 | 0.807399 | 5.152205e-50 | -8.615850e-47 |
| Msa0181000 | Msa0261160 | 0.847704 | 9.770252e-60 | -8.615850e-47 |
| Msa0181000 | Msa0274630 | 0.803947 | 2.733764e-49 | -8.615850e-47 |
| Msa0181000 | Msa0277420 | 0.865158 | 7.235596e-65 | -8.615850e-47 |
| Msa0181000 | Msa0307570 | 0.820847 | 5.523834e-53 | -8.615850e-47 |
| Msa0181000 | Msa0312530 | 0.819438 | 1.161651e-52 | -8.615850e-47 |
| Msa0181000 | Msa0317270 | 0.869659 | 2.623822e-66 | -8.615850e-47 |
| Msa0181000 | Msa0343770 | 0.835014 | 2.147339e-56 | -8.615850e-47 |
| Msa0181000 | Msa0346990 | 0.804992 | 1.655418e-49 | -8.615850e-47 |
| Msa0181000 | Msa0384670 | 0.842059 | 3.258009e-58 | -8.615850e-47 |
| Msa0181000 | Msa0392200 | 0.814399 | 1.571621e-51 | -8.615850e-47 |
| Msa0181000 | Msa0394690 | 0.824613 | 7.340856e-54 | -8.615850e-47 |
| Msa0181000 | Msa0403660 | 0.814749 | 1.314793e-51 | -8.615850e-47 |
| Msa0181000 | Msa0429090 | 0.812561 | 3.984387e-51 | -8.615850e-47 |
| Msa0181000 | Msa0434570 | 0.848184 | 7.205631e-60 | -8.615850e-47 |
| Msa0181000 | Msa0434770 | 0.847262 | 1.292603e-59 | -8.615850e-47 |
| Msa0181000 | Msa0443430 | 0.803905 | 2.788680e-49 | -8.615850e-47 |
| Msa0181000 | Msa0478580 | 0.839480 | 1.545266e-57 | -8.615850e-47 |
| Msa0181000 | Msa0487780 | 0.807756 | 4.326609e-50 | -8.615850e-47 |
| Msa0181000 | Msa0518030 | 0.806720 | 7.172535e-50 | -8.615850e-47 |
| Msa0181000 | Msa0527190 | 0.817040 | 4.052606e-52 | -8.615850e-47 |
| Msa0181000 | Msa0547990 | 0.805670 | 1.193604e-49 | -8.615850e-47 |
| Msa0181000 | Msa0556010 | 0.834395 | 3.072186e-56 | -8.615850e-47 |
| Msa0181000 | Msa0576890 | 0.836964 | 6.870462e-57 | -8.615850e-47 |
| Msa0181000 | Msa0581690 | 0.828002 | 1.144962e-54 | -8.615850e-47 |
| Msa0181000 | Msa0583500 | 0.826817 | 2.202753e-54 | -8.615850e-47 |
| Msa0181000 | Msa0584550 | 0.837572 | 4.802299e-57 | -8.615850e-47 |
| Msa0181000 | Msa0588220 | 0.810664 | 1.029978e-50 | -8.615850e-47 |
| Msa0181000 | Msa0597770 | 0.819266 | 1.270813e-52 | -8.615850e-47 |
| Msa0181000 | Msa0606810 | 0.806025 | 1.005005e-49 | -8.615850e-47 |
| Msa0181000 | Msa0615420 | 0.807632 | 4.597854e-50 | -8.615850e-47 |
| Msa0181000 | Msa0616450 | 0.801792 | 7.618027e-49 | -8.615850e-47 |
| Msa0181000 | Msa0655920 | 0.804370 | 2.231742e-49 | -8.615850e-47 |
| Msa0181000 | Msa0669180 | 0.808201 | 3.479089e-50 | -8.615850e-47 |
| Msa0181000 | Msa0679100 | 0.822758 | 1.995987e-53 | -8.615850e-47 |
| Msa0181000 | Msa0689760 | 0.805273 | 1.445609e-49 | -8.615850e-47 |
| Msa0181000 | Msa0698640 | 0.802448 | 5.583852e-49 | -8.615850e-47 |
| Msa0181000 | Msa0702340 | 0.806777 | 6.977495e-50 | -8.615850e-47 |
| Msa0181000 | Msa0702590 | 0.809724 | 1.642766e-50 | -8.615850e-47 |
| Msa0181000 | Msa0702660 | 0.807463 | 4.993163e-50 | -8.615850e-47 |
| Msa0181000 | Msa0716410 | 0.843788 | 1.129382e-58 | -8.615850e-47 |
| Msa0181000 | Msa0716860 | 0.813798 | 2.132687e-51 | -8.615850e-47 |
| Msa0181000 | Msa0716970 | 0.811088 | 8.339302e-51 | -8.615850e-47 |
| Msa0181000 | Msa0740720 | 0.822287 | 2.568191e-53 | -8.615850e-47 |
| Msa0181000 | Msa0750250 | 0.849251 | 3.645939e-60 | -8.615850e-47 |
| Msa0181000 | Msa0757800 | 0.806940 | 6.443000e-50 | -8.615850e-47 |
| Msa0181000 | Msa0799000 | 0.837457 | 5.139895e-57 | -8.615850e-47 |
| Msa0181000 | Msa0837410 | 0.821624 | 3.656500e-53 | -8.615850e-47 |
| Msa0181000 | Msa0861450 | 0.829905 | 3.961870e-55 | -8.615850e-47 |
| Msa0181000 | Msa0879060 | 0.829438 | 5.147451e-55 | -8.615850e-47 |
| Msa0181000 | Msa0929090 | 0.845848 | 3.144700e-59 | -8.615850e-47 |
| Msa0181000 | Msa0992030 | 0.838153 | 3.404588e-57 | -8.615850e-47 |
| Msa0181000 | Msa0993740 | 0.800254 | 1.571118e-48 | -8.615850e-47 |
| Msa0181000 | Msa0993760 | 0.844465 | 7.436364e-59 | -8.615850e-47 |
| Msa0181000 | Msa1007820 | -0.804605 | 1.993385e-49 | -8.615850e-47 |
| Msa0181000 | Msa1009390 | 0.803572 | 3.270645e-49 | -8.615850e-47 |
| Msa0181000 | Msa1010460 | 0.819225 | 1.298644e-52 | -8.615850e-47 |
| Msa0181000 | Msa1049290 | -0.810639 | 1.042779e-50 | -8.615850e-47 |
| Msa0181000 | Msa1050700 | 0.804136 | 2.496840e-49 | -8.615850e-47 |
| Msa0181000 | Msa1051600 | 0.813750 | 2.185085e-51 | -8.615850e-47 |
| Msa0181000 | Msa1071660 | 0.807848 | 4.135957e-50 | -8.615850e-47 |
| Msa0181000 | Msa1098290 | 0.821543 | 3.819288e-53 | -8.615850e-47 |
| Msa0181000 | Msa1127770 | 0.813817 | 2.111816e-51 | -8.615850e-47 |
| Msa0181000 | Msa1128330 | 0.823672 | 1.220890e-53 | -8.615850e-47 |
| Msa0181000 | Msa1138320 | 0.817759 | 2.791310e-52 | -8.615850e-47 |
| Msa0181000 | Msa1158660 | 0.811496 | 6.801349e-51 | -8.615850e-47 |
| Msa0181000 | Msa1158770 | 0.822502 | 2.288626e-53 | -8.615850e-47 |
| Msa0181000 | Msa1168590 | 0.805866 | 1.085400e-49 | -8.615850e-47 |
| Msa0181000 | Msa1169720 | 0.838119 | 3.473910e-57 | -8.615850e-47 |
| Msa0181000 | Msa1173900 | 0.806591 | 7.635166e-50 | -8.615850e-47 |
| Msa0181000 | Msa1188560 | 0.807345 | 5.290326e-50 | -8.615850e-47 |
| Msa0181000 | Msa1198880 | 0.818108 | 2.327766e-52 | -8.615850e-47 |
| Msa0181000 | Msa1204100 | -0.804841 | 1.779995e-49 | -8.615850e-47 |
| Msa0181000 | Msa1206650 | 0.801357 | 9.353736e-49 | -8.615850e-47 |
| Msa0181000 | Msa1213810 | 0.816767 | 4.667510e-52 | -8.615850e-47 |
| Msa0181000 | Msa1214320 | 0.825895 | 3.652021e-54 | -8.615850e-47 |
| Msa0181000 | Msa1218920 | 0.841913 | 3.560997e-58 | -8.615850e-47 |
| Msa0181000 | Msa1223330 | 0.827919 | 1.198929e-54 | -8.615850e-47 |
| Msa0181000 | Msa1224840 | 0.814401 | 1.569607e-51 | -8.615850e-47 |
| Msa0181000 | Msa1242640 | 0.804695 | 1.909516e-49 | -8.615850e-47 |
| Msa0181000 | Msa1261070 | 0.823306 | 1.487257e-53 | -8.615850e-47 |
| Msa0181000 | Msa1262960 | 0.833782 | 4.375636e-56 | -8.615850e-47 |
| Msa0181000 | Msa1266330 | 0.802274 | 6.063606e-49 | -8.615850e-47 |
| Msa0181000 | Msa1302060 | 0.851287 | 9.789718e-61 | -8.615850e-47 |
| Msa0181000 | Msa1318620 | 0.812093 | 5.042673e-51 | -8.615850e-47 |
| Msa0181000 | Msa1320820 | 0.805158 | 1.527736e-49 | -8.615850e-47 |
| Msa0181000 | Msa1329450 | 0.812933 | 3.304322e-51 | -8.615850e-47 |
| Msa0181000 | Msa1332840 | 0.853977 | 1.671906e-61 | -8.615850e-47 |
| Msa0181000 | Msa1333890 | 0.805731 | 1.158653e-49 | -8.615850e-47 |
| Msa0181000 | Msa1333970 | 0.814406 | 1.565587e-51 | -8.615850e-47 |
| Msa0181000 | Msa1338830 | 0.812110 | 4.998228e-51 | -8.615850e-47 |
| Msa0181000 | Msa1344310 | 0.807231 | 5.591193e-50 | -8.615850e-47 |
| Msa0181000 | Msa1359920 | 0.823209 | 1.566867e-53 | -8.615850e-47 |
| Msa0181000 | Msa1366300 | 0.831092 | 2.030782e-55 | -8.615850e-47 |
| Msa0181000 | Msa1371520 | 0.822007 | 2.981701e-53 | -8.615850e-47 |
| Msa0181000 | Msa1373820 | 0.810234 | 1.275701e-50 | -8.615850e-47 |
| Msa0181000 | Msa1379590 | 0.868472 | 6.364601e-66 | -8.615850e-47 |
| Msa0181000 | Msa1420250 | 0.805474 | 1.311654e-49 | -8.615850e-47 |
| Msa0181000 | Msa1422910 | 0.829847 | 4.092753e-55 | -8.615850e-47 |
| Msa0181000 | Msa1424640 | 0.873006 | 2.052871e-67 | -8.615850e-47 |
| Msa0181000 | Msa1432480 | 0.831837 | 1.330777e-55 | -8.615850e-47 |
| Msa0181000 | Msa1433220 | 0.824330 | 8.559146e-54 | -8.615850e-47 |
| Msa0181000 | Msa1458340 | 0.806954 | 6.399607e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181000 | MtrunA17_Chr1g0203771 | 98.799 | 333 | 4 | 0 | 1 | 333 | 1 | 333 | 0.0 | 675 |
| Msa0181000 | MtrunA17_Chr6g0473621 | 63.333 | 360 | 100 | 7 | 1 | 333 | 1 | 355 | 5.99e-141 | 403 |
| Msa0181000 | MtrunA17_Chr4g0057261 | 48.592 | 284 | 115 | 5 | 18 | 301 | 28 | 280 | 5.70e-77 | 237 |
| Msa0181000 | MtrunA17_Chr2g0285591 | 45.070 | 213 | 114 | 1 | 17 | 229 | 25 | 234 | 3.17e-62 | 198 |
| Msa0181000 | MtrunA17_Chr7g0243051 | 40.909 | 220 | 128 | 2 | 6 | 224 | 2 | 220 | 2.54e-52 | 172 |
| Msa0181000 | MtrunA17_Chr4g0007601 | 45.455 | 187 | 102 | 0 | 39 | 225 | 19 | 205 | 1.91e-49 | 166 |
| Msa0181000 | MtrunA17_Chr6g0458271 | 39.815 | 108 | 61 | 1 | 21 | 128 | 37 | 140 | 3.84e-23 | 94.0 |
| Msa0181000 | MtrunA17_Chr6g0458281 | 38.889 | 108 | 61 | 1 | 21 | 128 | 35 | 137 | 8.80e-23 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181000 | AT5G07220.1 | 51.471 | 340 | 121 | 9 | 1 | 333 | 1 | 303 | 1.26e-106 | 314 |
| Msa0181000 | AT5G52060.1 | 54.403 | 318 | 125 | 7 | 22 | 333 | 39 | 342 | 6.38e-103 | 306 |
| Msa0181000 | AT5G62100.2 | 48.649 | 333 | 121 | 7 | 1 | 332 | 1 | 284 | 1.56e-99 | 295 |
| Msa0181000 | AT5G62100.1 | 47.093 | 344 | 121 | 8 | 1 | 332 | 1 | 295 | 9.43e-96 | 286 |
| Msa0181000 | AT5G62100.5 | 57.767 | 206 | 77 | 2 | 1 | 206 | 1 | 196 | 2.45e-79 | 241 |
| Msa0181000 | AT5G62100.4 | 57.005 | 207 | 79 | 2 | 1 | 207 | 1 | 197 | 8.86e-79 | 240 |
| Msa0181000 | AT5G62100.3 | 56.962 | 158 | 58 | 2 | 1 | 158 | 1 | 148 | 7.54e-58 | 184 |
| Msa0181000 | AT5G62100.6 | 56.962 | 158 | 58 | 2 | 1 | 158 | 1 | 148 | 7.54e-58 | 184 |
| Msa0181000 | AT3G51780.1 | 40.367 | 218 | 113 | 3 | 22 | 225 | 10 | 224 | 8.05e-45 | 154 |
| Msa0181000 | AT5G14360.1 | 37.273 | 110 | 64 | 1 | 21 | 130 | 47 | 151 | 1.13e-21 | 90.5 |
| Msa0181000 | AT5G40630.1 | 35.455 | 110 | 68 | 2 | 21 | 130 | 55 | 161 | 2.67e-20 | 86.7 |
Find 113 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAATACATTTGATATTT+TGG | 0.031025 | 1_4:-69070834 | Msa0181000:three_prime_UTR |
| ATTAGAGTTAAGGTTAAATT+TGG | 0.209267 | 1_4:-69073193 | Msa0181000:CDS |
| ACCGGTGCCGGAAAAGTTTA+TGG | 0.223086 | 1_4:+69073625 | None:intergenic |
| TTTACATCATCGGCAATAAA+TGG | 0.236093 | 1_4:-69070914 | Msa0181000:three_prime_UTR |
| GTGATTGTGTGGATGTGTTT+TGG | 0.245466 | 1_4:-69071025 | Msa0181000:three_prime_UTR |
| TCCAAAATATCAAATGTATT+TGG | 0.249866 | 1_4:+69070833 | None:intergenic |
| CAAAGATCTACATCTTGTTT+TGG | 0.296970 | 1_4:-69073371 | Msa0181000:five_prime_UTR |
| TCATAAATTACAACCAAGTT+TGG | 0.308165 | 1_4:-69071280 | Msa0181000:CDS |
| AAGTTGTAGTTACTACAAAA+TGG | 0.317039 | 1_4:-69071173 | Msa0181000:CDS |
| CAACTAGAAGGCATGTCTAT+TGG | 0.328595 | 1_4:-69071306 | Msa0181000:CDS |
| ATAAATGGGGTTGCTATGAT+AGG | 0.340960 | 1_4:-69070899 | Msa0181000:three_prime_UTR |
| AAAATGTTAACCGGTCCAAC+TGG | 0.346168 | 1_4:-69072579 | Msa0181000:CDS |
| CTGAAAATTAAGAATTCTAA+TGG | 0.350736 | 1_4:-69071387 | Msa0181000:CDS |
| TTGGAAGTAGATAGGCTTGC+AGG | 0.354563 | 1_4:-69072360 | Msa0181000:CDS |
| CGAGTCTCGATCCGAGTCTA+AGG | 0.358675 | 1_4:+69073231 | None:intergenic |
| GAAAGTACAGAAAATCAAAA+TGG | 0.359392 | 1_4:+69073934 | None:intergenic |
| GCTGAAGTGACAGGAATTAA+TGG | 0.377943 | 1_4:+69071129 | None:intergenic |
| AACTAGAAGGCATGTCTATT+GGG | 0.380751 | 1_4:-69071305 | Msa0181000:CDS |
| CCTTCTAGTTGCTCATCAAT+TGG | 0.382641 | 1_4:+69071318 | None:intergenic |
| CAGTTCATCCCAAGTTCAAA+TGG | 0.385056 | 1_4:-69071077 | Msa0181000:CDS |
| AAGGCATTTCTTGACATAGT+AGG | 0.386721 | 1_4:-69072504 | Msa0181000:CDS |
| CCACTCCAAACCTCTAGGTT+CGG | 0.402186 | 1_4:+69073291 | None:intergenic |
| TCCACCGACAATTAGAGTTA+AGG | 0.402326 | 1_4:-69073203 | Msa0181000:CDS |
| TTACATCATCGGCAATAAAT+GGG | 0.403982 | 1_4:-69070913 | Msa0181000:three_prime_UTR |
| TTCTTTGTATTCGTGTGGAT+TGG | 0.404307 | 1_4:-69073464 | Msa0181000:five_prime_UTR |
| AGTAGATAGGCTTGCAGGGC+AGG | 0.406809 | 1_4:-69072355 | Msa0181000:intron |
| TACCTCTTCTCTTGAGCAAT+AGG | 0.407029 | 1_4:+69072444 | None:intergenic |
| ATTAGTTCACAAGCAACATT+TGG | 0.407228 | 1_4:-69073148 | Msa0181000:intron |
| GGTTCCCGAACCTAGAGGTT+TGG | 0.408188 | 1_4:-69073296 | Msa0181000:CDS |
| ACAAAAGTATGTTGAAACTT+TGG | 0.410750 | 1_4:-69071415 | Msa0181000:CDS |
| AAATTAGCTTGGAAGTAGAT+AGG | 0.412929 | 1_4:-69072368 | Msa0181000:CDS |
| AAAGATCGCCGGACGGAAAC+CGG | 0.419829 | 1_4:+69073607 | None:intergenic |
| GAAGTGTTCCCATTTGAACT+TGG | 0.421460 | 1_4:+69071068 | None:intergenic |
| CCAATTGATGAGCAACTAGA+AGG | 0.428546 | 1_4:-69071318 | Msa0181000:CDS |
| TTAGAGGAATCAATGGCGTT+TGG | 0.433140 | 1_4:+69073545 | None:intergenic |
| TAAAGATAAATCAAAGTTAG+TGG | 0.440071 | 1_4:-69072478 | Msa0181000:CDS |
| GATGTAAATGACAGACTAAA+GGG | 0.444896 | 1_4:+69070929 | None:intergenic |
| TTCCGGCACCGGTTTCCGTC+CGG | 0.447017 | 1_4:-69073615 | Msa0181000:five_prime_UTR |
| AAGAACGTGACGAATCATAA+TGG | 0.447206 | 1_4:-69073325 | Msa0181000:CDS |
| TGTGATTGTTGCTCCAAACT+TGG | 0.451240 | 1_4:+69071267 | None:intergenic |
| CACTCCAAACCTCTAGGTTC+GGG | 0.452343 | 1_4:+69073292 | None:intergenic |
| TAAATCAAAGTTAGTGGTGA+TGG | 0.454330 | 1_4:-69072472 | Msa0181000:CDS |
| GATGAGACCAGGAGGCTTGT+TGG | 0.454427 | 1_4:-69073266 | Msa0181000:CDS |
| CTCTGTTCTGGAGGAATCGA+TGG | 0.460753 | 1_4:+69073897 | None:intergenic |
| GCTTAAGTTGGATGGTATAG+TGG | 0.470152 | 1_4:-69072157 | Msa0181000:CDS |
| ATCTATTTCAGAAATTAGCT+TGG | 0.470708 | 1_4:-69072379 | Msa0181000:CDS |
| TTAACCTTAACTCTAATTGT+CGG | 0.472025 | 1_4:+69073199 | None:intergenic |
| TGCTCAAGAGAAGAGGTACT+TGG | 0.472792 | 1_4:-69072439 | Msa0181000:CDS |
| TAGTCTGTCATTTACATCAT+CGG | 0.489273 | 1_4:-69070924 | Msa0181000:three_prime_UTR |
| GATGAATCAGTTGCTTAAGT+TGG | 0.489833 | 1_4:-69072169 | Msa0181000:CDS |
| AGTTGTAGTTACTACAAAAT+GGG | 0.490238 | 1_4:-69071172 | Msa0181000:CDS |
| CAATCACAAAGGAACTCAAA+CGG | 0.493312 | 1_4:-69071252 | Msa0181000:CDS |
| GGGATGAACTGAATTATTAG+TGG | 0.493980 | 1_4:+69071089 | None:intergenic |
| CGCCGGACGGAAACCGGTGC+CGG | 0.494825 | 1_4:+69073613 | None:intergenic |
| GTACTATGAAGCAAAATGTA+TGG | 0.496289 | 1_4:+69073725 | None:intergenic |
| AATCACAAAGGAACTCAAAC+GGG | 0.496767 | 1_4:-69071251 | Msa0181000:CDS |
| CGTTGAACCAACAAGCCTCC+TGG | 0.506657 | 1_4:+69073259 | None:intergenic |
| AAGTGTTCCCATTTGAACTT+GGG | 0.507977 | 1_4:+69071069 | None:intergenic |
| GACGAATCATAATGGAGGTT+CGG | 0.509154 | 1_4:-69073317 | Msa0181000:CDS |
| AGTTCATCCCAAGTTCAAAT+GGG | 0.515662 | 1_4:-69071076 | Msa0181000:CDS |
| ACTAATGTTGACTTCATGAT+AGG | 0.516375 | 1_4:+69073165 | None:intergenic |
| GTGGTGTATCCCAGTTGGAC+CGG | 0.518541 | 1_4:+69072569 | None:intergenic |
| AATCAGTTGCTTAAGTTGGA+TGG | 0.521756 | 1_4:-69072165 | Msa0181000:CDS |
| TGGATGGTATAGTGGCTGAT+GGG | 0.523352 | 1_4:-69072149 | Msa0181000:CDS |
| AAAATATCAAATGTATTTGG+AGG | 0.525365 | 1_4:+69070836 | None:intergenic |
| TCTAGTTGCTCATCAATTGG+AGG | 0.528067 | 1_4:+69071321 | None:intergenic |
| GAATTGAAGAAAATGTTAAC+CGG | 0.528236 | 1_4:-69072588 | Msa0181000:CDS |
| CTCGATCCGAGTCTAAGGTT+CGG | 0.528564 | 1_4:+69073236 | None:intergenic |
| TGATGTAAATGACAGACTAA+AGG | 0.528805 | 1_4:+69070928 | None:intergenic |
| CTCGAAACAATAATTAGTAA+AGG | 0.528826 | 1_4:-69072237 | Msa0181000:CDS |
| TAATATGAGATATGAGATAG+AGG | 0.530055 | 1_4:+69073779 | None:intergenic |
| CCGAACCTAGAGGTTTGGAG+TGG | 0.531731 | 1_4:-69073291 | Msa0181000:CDS |
| GTGCAGTGTTTGTGATTGTG+TGG | 0.533061 | 1_4:-69071036 | Msa0181000:three_prime_UTR |
| ACCTTAACTCTAATTGTCGG+TGG | 0.538745 | 1_4:+69073202 | None:intergenic |
| CTTAGACTCGGATCGAGACT+CGG | 0.539623 | 1_4:-69073230 | Msa0181000:CDS |
| TGGATTTATACGTGAGTAGG+AGG | 0.542356 | 1_4:+69073745 | None:intergenic |
| AAACAAGGAGAGGGATTCAA+AGG | 0.544060 | 1_4:-69072523 | Msa0181000:CDS |
| TTGGAGTGGGAGATGAGACC+AGG | 0.544656 | 1_4:-69073277 | Msa0181000:CDS |
| TCTTGGTGGTGTATCCCAGT+TGG | 0.549913 | 1_4:+69072564 | None:intergenic |
| GATGAGGATGCTGAAGTGAC+AGG | 0.550910 | 1_4:+69071120 | None:intergenic |
| TAAATGGGGTTGCTATGATA+GGG | 0.551338 | 1_4:-69070898 | Msa0181000:three_prime_UTR |
| GAAACAATAATTAGTAAAGG+TGG | 0.554611 | 1_4:-69072234 | Msa0181000:CDS |
| TGGAAGTAGATAGGCTTGCA+GGG | 0.562410 | 1_4:-69072359 | Msa0181000:CDS |
| AAACAATAATTAGTAAAGGT+GGG | 0.565385 | 1_4:-69072233 | Msa0181000:CDS |
| AGGATGGCAGCATAGTTAGC+TGG | 0.566058 | 1_4:-69073979 | Msa0181000:five_prime_UTR |
| TTGGATGGTATAGTGGCTGA+TGG | 0.567402 | 1_4:-69072150 | Msa0181000:CDS |
| AAATATAATAACACTCCAAG+TGG | 0.573455 | 1_4:+69070993 | None:intergenic |
| GGATGGTATAGTGGCTGATG+GGG | 0.575853 | 1_4:-69072148 | Msa0181000:CDS |
| AAAATCTGAAATAATTTGGG+AGG | 0.577119 | 1_4:+69073803 | None:intergenic |
| ATCTCCCACTCCAAACCTCT+AGG | 0.584464 | 1_4:+69073286 | None:intergenic |
| GTATGGATTTATACGTGAGT+AGG | 0.587242 | 1_4:+69073742 | None:intergenic |
| TAAATTGCAGAGGAAAATGC+AGG | 0.597959 | 1_4:-69072121 | Msa0181000:intron |
| ATCAAAGTTAGTGGTGATGG+AGG | 0.599290 | 1_4:-69072469 | Msa0181000:CDS |
| AATGTTGACTTCATGATAGG+TGG | 0.604883 | 1_4:+69073168 | None:intergenic |
| TCTGAGGTAGAATTCGTAGA+GGG | 0.608688 | 1_4:+69071195 | None:intergenic |
| ATCCTATTGCTCAAGAGAAG+AGG | 0.610825 | 1_4:-69072446 | Msa0181000:CDS |
| AAATCTGAAATAATTTGGGA+GGG | 0.613371 | 1_4:+69073804 | None:intergenic |
| TACATCATCGGCAATAAATG+GGG | 0.614606 | 1_4:-69070912 | Msa0181000:three_prime_UTR |
| AAATGTTAACCGGTCCAACT+GGG | 0.615599 | 1_4:-69072578 | Msa0181000:CDS |
| TGTAGTAACTACAACTTCTG+AGG | 0.617406 | 1_4:+69071179 | None:intergenic |
| TTAACTCTAATTGTCGGTGG+AGG | 0.619157 | 1_4:+69073205 | None:intergenic |
| GGTTCGGTTCCCGAACCTAG+AGG | 0.622759 | 1_4:-69073301 | Msa0181000:CDS |
| CGAACCTAGAGGTTTGGAGT+GGG | 0.637249 | 1_4:-69073290 | Msa0181000:CDS |
| AAAATTAAGAATTCTAATGG+AGG | 0.640605 | 1_4:-69071384 | Msa0181000:CDS |
| ATGGGGATGTTAAATTGCAG+AGG | 0.645911 | 1_4:-69072131 | Msa0181000:CDS |
| TGTATAAGAAGAGATTTGGG+TGG | 0.649734 | 1_4:-69073415 | Msa0181000:five_prime_UTR |
| TTCTGAGGTAGAATTCGTAG+AGG | 0.661653 | 1_4:+69071194 | None:intergenic |
| ATTAGTGGATGAGCTTGATG+AGG | 0.662225 | 1_4:+69071104 | None:intergenic |
| AACGTGACGAATCATAATGG+AGG | 0.690876 | 1_4:-69073322 | Msa0181000:CDS |
| TCAACGCCGAACCTTAGACT+CGG | 0.694481 | 1_4:-69073242 | Msa0181000:CDS |
| GAGTGGGAGATGAGACCAGG+AGG | 0.701762 | 1_4:-69073274 | Msa0181000:CDS |
| GTTTGGAGCAACAATCACAA+AGG | 0.714476 | 1_4:-69071263 | Msa0181000:CDS |
| GAAGTGACAGGAATTAATGG+TGG | 0.757122 | 1_4:+69071132 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAATAAAA+GGG | + | chr1_4:69071624-69071643 | None:intergenic | 0.0% |
| !! | ATAATAATAATAATAATAAA+AGG | + | chr1_4:69071625-69071644 | None:intergenic | 0.0% |
| !! | ATAATAATAATAATAAAAGG+GGG | + | chr1_4:69071622-69071641 | None:intergenic | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | - | chr1_4:69071892-69071911 | Msa0181000:intron | 10.0% |
| !! | ATTAATAAAATTAGATGTTA+GGG | + | chr1_4:69072807-69072826 | None:intergenic | 10.0% |
| !! | TAAAATTAAGTCATTTAAAA+TGG | + | chr1_4:69072904-69072923 | None:intergenic | 10.0% |
| !! | TAATAATAATAATAAAAGGG+GGG | + | chr1_4:69071621-69071640 | None:intergenic | 15.0% |
| !! | TATACATTAGTAAAAAAGTA+TGG | + | chr1_4:69071788-69071807 | None:intergenic | 15.0% |
| !!! | TATAAAATATTTTTTGGTCT+TGG | + | chr1_4:69072187-69072206 | None:intergenic | 15.0% |
| !! | AATGAGAAAAAATATAAAGA+TGG | - | chr1_4:69072316-69072335 | Msa0181000:intron | 15.0% |
| !! | AAAAAATATAAAGATGGAAA+GGG | - | chr1_4:69072322-69072341 | Msa0181000:intron | 15.0% |
| !!! | TTTTTTTTTTATGATAAGGT+TGG | - | chr1_4:69072403-69072422 | Msa0181000:CDS | 15.0% |
| !! | ATATTTAATGCTTGAATAAT+TGG | - | chr1_4:69072431-69072450 | Msa0181000:CDS | 15.0% |
| !! | AAAAATTATGACATCTAATT+TGG | - | chr1_4:69072740-69072759 | Msa0181000:intron | 15.0% |
| !! | CATTAATAAAATTAGATGTT+AGG | + | chr1_4:69072808-69072827 | None:intergenic | 15.0% |
| !!! | ACATTCATTAATGATTTTAT+TGG | - | chr1_4:69073236-69073255 | Msa0181000:CDS | 15.0% |
| !! | AAAAACAAATTCCTCATTAT+TGG | - | chr1_4:69070859-69070878 | Msa0181000:three_prime_UTR | 20.0% |
| !! | AAAAAACAATTCCAATAATG+AGG | + | chr1_4:69070873-69070892 | None:intergenic | 20.0% |
| !!! | GGAAAAATCTGAAATAATTT+GGG | + | chr1_4:69070934-69070953 | None:intergenic | 20.0% |
| !!! | AGGAAAAATCTGAAATAATT+TGG | + | chr1_4:69070935-69070954 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCATAAACTTTTC+CGG | - | chr1_4:69071099-69071118 | Msa0181000:CDS | 20.0% |
| !!! | TCTTTTTTTTCCTTTTTTAG+AGG | + | chr1_4:69071205-69071224 | None:intergenic | 20.0% |
| !! | GAATACAAAGAAAAAAACAA+AGG | + | chr1_4:69071259-69071278 | None:intergenic | 20.0% |
| !!! | TTTTTGTATAAGAAGAGATT+TGG | - | chr1_4:69071312-69071331 | Msa0181000:CDS | 20.0% |
| !!! | TTTTGTATAAGAAGAGATTT+GGG | - | chr1_4:69071313-69071332 | Msa0181000:CDS | 20.0% |
| !! | ATTAGAGTTAAGGTTAAATT+TGG | - | chr1_4:69071538-69071557 | Msa0181000:intron | 20.0% |
| !! | AATAATAATAATAAAAGGGG+GGG | + | chr1_4:69071620-69071639 | None:intergenic | 20.0% |
| !! | GATTGAATAAATCATTTATC+TGG | - | chr1_4:69072027-69072046 | Msa0181000:intron | 20.0% |
| !! | AAAAATCAATCATTCGATAT+AGG | + | chr1_4:69072074-69072093 | None:intergenic | 20.0% |
| !!! | TATTTTATAAAAACAAGGAG+AGG | - | chr1_4:69072198-69072217 | Msa0181000:CDS | 20.0% |
| !!! | ATTTTATAAAAACAAGGAGA+GGG | - | chr1_4:69072199-69072218 | Msa0181000:CDS | 20.0% |
| !! | TAAAGATAAATCAAAGTTAG+TGG | - | chr1_4:69072253-69072272 | Msa0181000:intron | 20.0% |
| !! | GAAAAAATATAAAGATGGAA+AGG | - | chr1_4:69072321-69072340 | Msa0181000:intron | 20.0% |
| !! | AAACAATAATTAGTAAAGGT+GGG | - | chr1_4:69072498-69072517 | Msa0181000:CDS | 20.0% |
| !!! | TTAAGTCATTTAAAATGGAA+CGG | + | chr1_4:69072899-69072918 | None:intergenic | 20.0% |
| !! | AATTATAGCATATAAGATGT+TGG | - | chr1_4:69072984-69073003 | Msa0181000:intron | 20.0% |
| !!! | ATGGTAGTTAATAATTTTGA+AGG | - | chr1_4:69073283-69073302 | Msa0181000:CDS | 20.0% |
| !! | CTGAAAATTAAGAATTCTAA+TGG | - | chr1_4:69073344-69073363 | Msa0181000:exon | 20.0% |
| !! | AAAATTAAGAATTCTAATGG+AGG | - | chr1_4:69073347-69073366 | Msa0181000:exon | 20.0% |
| !! | AAAATATCAAATGTATTTGG+AGG | + | chr1_4:69073898-69073917 | None:intergenic | 20.0% |
| !!! | TCCAAATACATTTGATATTT+TGG | - | chr1_4:69073897-69073916 | Msa0181000:five_prime_UTR | 20.0% |
| !! | TCCAAAATATCAAATGTATT+TGG | + | chr1_4:69073901-69073920 | None:intergenic | 20.0% |
| ! | GAAATGAATATAAAAACGTG+TGG | + | chr1_4:69070778-69070797 | None:intergenic | 25.0% |
| !! | GAAAGTACAGAAAATCAAAA+TGG | + | chr1_4:69070800-69070819 | None:intergenic | 25.0% |
| !! | AAATCTGAAATAATTTGGGA+GGG | + | chr1_4:69070930-69070949 | None:intergenic | 25.0% |
| !! | AAAATCTGAAATAATTTGGG+AGG | + | chr1_4:69070931-69070950 | None:intergenic | 25.0% |
| ! | TAATATGAGATATGAGATAG+AGG | + | chr1_4:69070955-69070974 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTTGTATTCGTG+TGG | - | chr1_4:69071262-69071281 | Msa0181000:CDS | 25.0% |
| ! | TTAACCTTAACTCTAATTGT+CGG | + | chr1_4:69071535-69071554 | None:intergenic | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | + | chr1_4:69071687-69071706 | None:intergenic | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | + | chr1_4:69071687-69071706 | None:intergenic | 25.0% |
| !! | CTTTCTCATTGATTAATGTT+TGG | - | chr1_4:69072110-69072129 | Msa0181000:intron | 25.0% |
| ! | GAATTGAAGAAAATGTTAAC+CGG | - | chr1_4:69072143-69072162 | Msa0181000:CDS | 25.0% |
| !!! | AAAATATTTTTTGGTCTTGG+TGG | + | chr1_4:69072184-69072203 | None:intergenic | 25.0% |
| ! | ATCTATTTCAGAAATTAGCT+TGG | - | chr1_4:69072352-69072371 | Msa0181000:intron | 25.0% |
| ! | ATGATATGAATTGCTTGATT+AGG | - | chr1_4:69072463-69072482 | Msa0181000:CDS | 25.0% |
| ! | CTCGAAACAATAATTAGTAA+AGG | - | chr1_4:69072494-69072513 | Msa0181000:CDS | 25.0% |
| ! | GAAACAATAATTAGTAAAGG+TGG | - | chr1_4:69072497-69072516 | Msa0181000:CDS | 25.0% |
| ! | TCAATTTAAGAGGAAATCTA+AGG | + | chr1_4:69072687-69072706 | None:intergenic | 25.0% |
| !!! | CACTCTAAAATCAATTTAAG+AGG | + | chr1_4:69072697-69072716 | None:intergenic | 25.0% |
| ! | ATGAAAATAACATTTAGTCC+CGG | - | chr1_4:69072768-69072787 | Msa0181000:intron | 25.0% |
| ! | TTTATTAATGTGTCCACTTT+AGG | - | chr1_4:69072818-69072837 | Msa0181000:intron | 25.0% |
| ! | GATACTTAAGATCAAAATTG+TGG | - | chr1_4:69073064-69073083 | Msa0181000:intron | 25.0% |
| ! | TGTCATATAATATAAGACGA+CGG | - | chr1_4:69073104-69073123 | Msa0181000:intron | 25.0% |
| ! | TAGTACATTATTGCTTCTAA+TGG | - | chr1_4:69073264-69073283 | Msa0181000:CDS | 25.0% |
| !! | ACAAAAGTATGTTGAAACTT+TGG | - | chr1_4:69073316-69073335 | Msa0181000:CDS | 25.0% |
| ! | TCATAAATTACAACCAAGTT+TGG | - | chr1_4:69073451-69073470 | Msa0181000:five_prime_UTR | 25.0% |
| ! | AAGTTGTAGTTACTACAAAA+TGG | - | chr1_4:69073558-69073577 | Msa0181000:five_prime_UTR | 25.0% |
| ! | AGTTGTAGTTACTACAAAAT+GGG | - | chr1_4:69073559-69073578 | Msa0181000:five_prime_UTR | 25.0% |
| ! | AAATATAATAACACTCCAAG+TGG | + | chr1_4:69073741-69073760 | None:intergenic | 25.0% |
| !!! | TTTGATATTTTGGACTTCTT+TGG | - | chr1_4:69073907-69073926 | Msa0181000:five_prime_UTR | 25.0% |
| !! | ATTTGTTTTTCTCTCTGTTC+TGG | + | chr1_4:69070849-69070868 | None:intergenic | 30.0% |
| GTACTATGAAGCAAAATGTA+TGG | + | chr1_4:69071009-69071028 | None:intergenic | 30.0% | |
| ! | TCAGTACTTTCAGATTTTAC+AGG | - | chr1_4:69071039-69071058 | Msa0181000:three_prime_UTR | 30.0% |
| !!! | TCCTTTTTTAGAGGAATCAA+TGG | + | chr1_4:69071196-69071215 | None:intergenic | 30.0% |
| !!! | AAGCTGAAACAAAGCTTTTT+TGG | - | chr1_4:69071227-69071246 | Msa0181000:CDS | 30.0% |
| !! | CAAAGATCTACATCTTGTTT+TGG | - | chr1_4:69071360-69071379 | Msa0181000:CDS | 30.0% |
| !! | ACTAATGTTGACTTCATGAT+AGG | + | chr1_4:69071569-69071588 | None:intergenic | 30.0% |
| ATTAGTTCACAAGCAACATT+TGG | - | chr1_4:69071583-69071602 | Msa0181000:intron | 30.0% | |
| GGGAGTAAAAATGCAAAAAT+TGG | + | chr1_4:69071705-69071724 | None:intergenic | 30.0% | |
| ATAGTGCACATTGCAAAAAT+TGG | + | chr1_4:69071747-69071766 | None:intergenic | 30.0% | |
| !!! | GACATGTATTTTGAAACAGA+GGG | - | chr1_4:69071954-69071973 | Msa0181000:intron | 30.0% |
| !! | TGATTAATGTTTGGTGTCAT+AGG | - | chr1_4:69072119-69072138 | Msa0181000:intron | 30.0% |
| !! | GATTAATGTTTGGTGTCATA+GGG | - | chr1_4:69072120-69072139 | Msa0181000:intron | 30.0% |
| !! | ATTAATGTTTGGTGTCATAG+GGG | - | chr1_4:69072121-69072140 | Msa0181000:intron | 30.0% |
| TAAATCAAAGTTAGTGGTGA+TGG | - | chr1_4:69072259-69072278 | Msa0181000:intron | 30.0% | |
| ! | AAATTAGCTTGGAAGTAGAT+AGG | - | chr1_4:69072363-69072382 | Msa0181000:CDS | 30.0% |
| ! | ATCAAAATTGTGGATTGACA+GGG | - | chr1_4:69073074-69073093 | Msa0181000:intron | 30.0% |
| ATATAATATAAGACGACGGA+GGG | - | chr1_4:69073108-69073127 | Msa0181000:intron | 30.0% | |
| !! | TTTGTTGAGGCTTTTTCTTT+GGG | + | chr1_4:69073379-69073398 | None:intergenic | 30.0% |
| !! | TTTTGTTGAGGCTTTTTCTT+TGG | + | chr1_4:69073380-69073399 | None:intergenic | 30.0% |
| !!! | GGCAATTTTACTTTTTGTTG+AGG | + | chr1_4:69073392-69073411 | None:intergenic | 30.0% |
| GATGTAAATGACAGACTAAA+GGG | + | chr1_4:69073805-69073824 | None:intergenic | 30.0% | |
| TGATGTAAATGACAGACTAA+AGG | + | chr1_4:69073806-69073825 | None:intergenic | 30.0% | |
| ! | TAGTCTGTCATTTACATCAT+CGG | - | chr1_4:69073807-69073826 | Msa0181000:five_prime_UTR | 30.0% |
| TTTACATCATCGGCAATAAA+TGG | - | chr1_4:69073817-69073836 | Msa0181000:five_prime_UTR | 30.0% | |
| TTACATCATCGGCAATAAAT+GGG | - | chr1_4:69073818-69073837 | Msa0181000:five_prime_UTR | 30.0% | |
| GTATGGATTTATACGTGAGT+AGG | + | chr1_4:69070992-69071011 | None:intergenic | 35.0% | |
| !!! | TTCTTTTTTGTGGTTCACGT+TGG | - | chr1_4:69071145-69071164 | Msa0181000:CDS | 35.0% |
| !!! | TCTTTTTTGTGGTTCACGTT+GGG | - | chr1_4:69071146-69071165 | Msa0181000:CDS | 35.0% |
| !! | GCCATTGATTCCTCTAAAAA+AGG | - | chr1_4:69071192-69071211 | Msa0181000:CDS | 35.0% |
| TTCTTTGTATTCGTGTGGAT+TGG | - | chr1_4:69071267-69071286 | Msa0181000:CDS | 35.0% | |
| TGTATAAGAAGAGATTTGGG+TGG | - | chr1_4:69071316-69071335 | Msa0181000:CDS | 35.0% | |
| AAGAACGTGACGAATCATAA+TGG | - | chr1_4:69071406-69071425 | Msa0181000:CDS | 35.0% | |
| !! | AATGTTGACTTCATGATAGG+TGG | + | chr1_4:69071566-69071585 | None:intergenic | 35.0% |
| !!! | GACATGTATTTTGAAACGGA+GGG | + | chr1_4:69071683-69071702 | None:intergenic | 35.0% |
| !!! | GACATGTATTTTGAAACGGA+GGG | + | chr1_4:69071683-69071702 | None:intergenic | 35.0% |
| ! | GTGCATTGATATATGTGAAG+TGG | - | chr1_4:69071923-69071942 | Msa0181000:intron | 35.0% |
| TATATGTGAAGTGGTTGACT+TGG | - | chr1_4:69071932-69071951 | Msa0181000:intron | 35.0% | |
| !!! | GGACATGTATTTTGAAACAG+AGG | - | chr1_4:69071953-69071972 | Msa0181000:intron | 35.0% |
| ! | AAGGCATTTCTTGACATAGT+AGG | - | chr1_4:69072227-69072246 | Msa0181000:CDS | 35.0% |
| GATGAATCAGTTGCTTAAGT+TGG | - | chr1_4:69072562-69072581 | Msa0181000:CDS | 35.0% | |
| !! | AATCAGTTGCTTAAGTTGGA+TGG | - | chr1_4:69072566-69072585 | Msa0181000:CDS | 35.0% |
| TAAATTGCAGAGGAAAATGC+AGG | - | chr1_4:69072610-69072629 | Msa0181000:intron | 35.0% | |
| AACATTTAGTCCCGGAAAAA+CGG | - | chr1_4:69072776-69072795 | Msa0181000:intron | 35.0% | |
| ! | GATCAAAATTGTGGATTGAC+AGG | - | chr1_4:69073073-69073092 | Msa0181000:intron | 35.0% |
| CATATAATATAAGACGACGG+AGG | - | chr1_4:69073107-69073126 | Msa0181000:intron | 35.0% | |
| ! | AACTAGAAGGCATGTCTATT+GGG | - | chr1_4:69073426-69073445 | Msa0181000:five_prime_UTR | 35.0% |
| CAATCACAAAGGAACTCAAA+CGG | - | chr1_4:69073479-69073498 | Msa0181000:five_prime_UTR | 35.0% | |
| AATCACAAAGGAACTCAAAC+GGG | - | chr1_4:69073480-69073499 | Msa0181000:five_prime_UTR | 35.0% | |
| TGTAGTAACTACAACTTCTG+AGG | + | chr1_4:69073555-69073574 | None:intergenic | 35.0% | |
| GGGATGAACTGAATTATTAG+TGG | + | chr1_4:69073645-69073664 | None:intergenic | 35.0% | |
| AGTTCATCCCAAGTTCAAAT+GGG | - | chr1_4:69073655-69073674 | Msa0181000:five_prime_UTR | 35.0% | |
| AAGTGTTCCCATTTGAACTT+GGG | + | chr1_4:69073665-69073684 | None:intergenic | 35.0% | |
| ! | TGATTGTGTGGATGTGTTTT+GGG | - | chr1_4:69073707-69073726 | Msa0181000:five_prime_UTR | 35.0% |
| !!! | TTTTGGGTTTGTTTTCCACT+TGG | - | chr1_4:69073723-69073742 | Msa0181000:five_prime_UTR | 35.0% |
| TACATCATCGGCAATAAATG+GGG | - | chr1_4:69073819-69073838 | Msa0181000:five_prime_UTR | 35.0% | |
| ATAAATGGGGTTGCTATGAT+AGG | - | chr1_4:69073832-69073851 | Msa0181000:five_prime_UTR | 35.0% | |
| TAAATGGGGTTGCTATGATA+GGG | - | chr1_4:69073833-69073852 | Msa0181000:five_prime_UTR | 35.0% | |
| ! | TGTTTTTCTCTCTGTTCTGG+AGG | + | chr1_4:69070846-69070865 | None:intergenic | 40.0% |
| TGGATTTATACGTGAGTAGG+AGG | + | chr1_4:69070989-69071008 | None:intergenic | 40.0% | |
| AAAAAAGAAAGATCGCCGGA+CGG | + | chr1_4:69071134-69071153 | None:intergenic | 40.0% | |
| CCACAAAAAAGAAAGATCGC+CGG | + | chr1_4:69071138-69071157 | None:intergenic | 40.0% | |
| TTAGAGGAATCAATGGCGTT+TGG | + | chr1_4:69071189-69071208 | None:intergenic | 40.0% | |
| AACGTGACGAATCATAATGG+AGG | - | chr1_4:69071409-69071428 | Msa0181000:CDS | 40.0% | |
| ! | GACGAATCATAATGGAGGTT+CGG | - | chr1_4:69071414-69071433 | Msa0181000:CDS | 40.0% |
| TTAACTCTAATTGTCGGTGG+AGG | + | chr1_4:69071529-69071548 | None:intergenic | 40.0% | |
| TCCACCGACAATTAGAGTTA+AGG | - | chr1_4:69071528-69071547 | Msa0181000:intron | 40.0% | |
| ACCTTAACTCTAATTGTCGG+TGG | + | chr1_4:69071532-69071551 | None:intergenic | 40.0% | |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | chr1_4:69071684-69071703 | None:intergenic | 40.0% |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | chr1_4:69071684-69071703 | None:intergenic | 40.0% |
| AAAATGTTAACCGGTCCAAC+TGG | - | chr1_4:69072152-69072171 | Msa0181000:CDS | 40.0% | |
| AAATGTTAACCGGTCCAACT+GGG | - | chr1_4:69072153-69072172 | Msa0181000:CDS | 40.0% | |
| AAACAAGGAGAGGGATTCAA+AGG | - | chr1_4:69072208-69072227 | Msa0181000:CDS | 40.0% | |
| !! | ATCAAAGTTAGTGGTGATGG+AGG | - | chr1_4:69072262-69072281 | Msa0181000:intron | 40.0% |
| ATCCTATTGCTCAAGAGAAG+AGG | - | chr1_4:69072285-69072304 | Msa0181000:intron | 40.0% | |
| TACCTCTTCTCTTGAGCAAT+AGG | + | chr1_4:69072290-69072309 | None:intergenic | 40.0% | |
| !! | GCTTAAGTTGGATGGTATAG+TGG | - | chr1_4:69072574-69072593 | Msa0181000:CDS | 40.0% |
| ATGGGGATGTTAAATTGCAG+AGG | - | chr1_4:69072600-69072619 | Msa0181000:intron | 40.0% | |
| ACATTTAGTCCCGGAAAAAC+GGG | - | chr1_4:69072777-69072796 | Msa0181000:intron | 40.0% | |
| !! | TTAGGGTTATCCCGTTTTTC+CGG | + | chr1_4:69072790-69072809 | None:intergenic | 40.0% |
| TCTAGTTGCTCATCAATTGG+AGG | + | chr1_4:69073413-69073432 | None:intergenic | 40.0% | |
| ! | CCTTCTAGTTGCTCATCAAT+TGG | + | chr1_4:69073416-69073435 | None:intergenic | 40.0% |
| CCAATTGATGAGCAACTAGA+AGG | - | chr1_4:69073413-69073432 | Msa0181000:five_prime_UTR | 40.0% | |
| ! | CAACTAGAAGGCATGTCTAT+TGG | - | chr1_4:69073425-69073444 | Msa0181000:five_prime_UTR | 40.0% |
| TGTGATTGTTGCTCCAAACT+TGG | + | chr1_4:69073467-69073486 | None:intergenic | 40.0% | |
| ! | GTTTGGAGCAACAATCACAA+AGG | - | chr1_4:69073468-69073487 | Msa0181000:five_prime_UTR | 40.0% |
| ! | TCTGAGGTAGAATTCGTAGA+GGG | + | chr1_4:69073539-69073558 | None:intergenic | 40.0% |
| !! | TTCTGAGGTAGAATTCGTAG+AGG | + | chr1_4:69073540-69073559 | None:intergenic | 40.0% |
| GAAGTGACAGGAATTAATGG+TGG | + | chr1_4:69073602-69073621 | None:intergenic | 40.0% | |
| GCTGAAGTGACAGGAATTAA+TGG | + | chr1_4:69073605-69073624 | None:intergenic | 40.0% | |
| ! | ATTAGTGGATGAGCTTGATG+AGG | + | chr1_4:69073630-69073649 | None:intergenic | 40.0% |
| CAGTTCATCCCAAGTTCAAA+TGG | - | chr1_4:69073654-69073673 | Msa0181000:five_prime_UTR | 40.0% | |
| ! | GAAGTGTTCCCATTTGAACT+TGG | + | chr1_4:69073666-69073685 | None:intergenic | 40.0% |
| ! | GTGATTGTGTGGATGTGTTT+TGG | - | chr1_4:69073706-69073725 | Msa0181000:five_prime_UTR | 40.0% |
| ! | ACGTGAGTAGGAGGATTTTG+TGG | + | chr1_4:69070980-69070999 | None:intergenic | 45.0% |
| ! | TCCATAAACTTTTCCGGCAC+CGG | - | chr1_4:69071105-69071124 | Msa0181000:CDS | 45.0% |
| !!! | CCGGCGATCTTTCTTTTTTG+TGG | - | chr1_4:69071135-69071154 | Msa0181000:CDS | 45.0% |
| ! | TTTTGTGGTTCACGTTGGGT+TGG | - | chr1_4:69071150-69071169 | Msa0181000:CDS | 45.0% |
| !! | TGCTCAAGAGAAGAGGTACT+TGG | - | chr1_4:69072292-69072311 | Msa0181000:intron | 45.0% |
| TTGGAAGTAGATAGGCTTGC+AGG | - | chr1_4:69072371-69072390 | Msa0181000:CDS | 45.0% | |
| TGGAAGTAGATAGGCTTGCA+GGG | - | chr1_4:69072372-69072391 | Msa0181000:CDS | 45.0% | |
| TTGGATGGTATAGTGGCTGA+TGG | - | chr1_4:69072581-69072600 | Msa0181000:CDS | 45.0% | |
| TGGATGGTATAGTGGCTGAT+GGG | - | chr1_4:69072582-69072601 | Msa0181000:CDS | 45.0% | |
| !! | TAGGGTTATCCCGTTTTTCC+GGG | + | chr1_4:69072789-69072808 | None:intergenic | 45.0% |
| TGTGTCCACTTTAGGTCACA+AGG | - | chr1_4:69072826-69072845 | Msa0181000:intron | 45.0% | |
| GTGTCCACTTTAGGTCACAA+GGG | - | chr1_4:69072827-69072846 | Msa0181000:intron | 45.0% | |
| TTGTCCCTTGTGACCTAAAG+TGG | + | chr1_4:69072834-69072853 | None:intergenic | 45.0% | |
| GTGCAGTGTTTGTGATTGTG+TGG | - | chr1_4:69073695-69073714 | Msa0181000:five_prime_UTR | 45.0% | |
| !! | AATAATAATAATAATAAAAG+GGG | + | chr1_4:69071623-69071642 | None:intergenic | 5.0% |
| !!! | TGTTTTTATAAAATATTTTT+TGG | + | chr1_4:69072193-69072212 | None:intergenic | 5.0% |
| !!! | AAAAATATTTTATAAAAACA+AGG | - | chr1_4:69072193-69072212 | Msa0181000:CDS | 5.0% |
| !!! | TAATTTTTTTTTTTATGATA+AGG | - | chr1_4:69072399-69072418 | Msa0181000:CDS | 5.0% |
| AGGATGGCAGCATAGTTAGC+TGG | - | chr1_4:69070752-69070771 | Msa0181000:three_prime_UTR | 50.0% | |
| !! | CTCTGTTCTGGAGGAATCGA+TGG | + | chr1_4:69070837-69070856 | None:intergenic | 50.0% |
| ! | ACCGGTGCCGGAAAAGTTTA+TGG | + | chr1_4:69071109-69071128 | None:intergenic | 50.0% |
| CACTCCAAACCTCTAGGTTC+GGG | + | chr1_4:69071442-69071461 | None:intergenic | 50.0% | |
| CCACTCCAAACCTCTAGGTT+CGG | + | chr1_4:69071443-69071462 | None:intergenic | 50.0% | |
| ! | CGAACCTAGAGGTTTGGAGT+GGG | - | chr1_4:69071441-69071460 | Msa0181000:intron | 50.0% |
| ATCTCCCACTCCAAACCTCT+AGG | + | chr1_4:69071448-69071467 | None:intergenic | 50.0% | |
| TCAACGCCGAACCTTAGACT+CGG | - | chr1_4:69071489-69071508 | Msa0181000:intron | 50.0% | |
| ! | CTCGATCCGAGTCTAAGGTT+CGG | + | chr1_4:69071498-69071517 | None:intergenic | 50.0% |
| CTTAGACTCGGATCGAGACT+CGG | - | chr1_4:69071501-69071520 | Msa0181000:intron | 50.0% | |
| !! | TCTTGGTGGTGTATCCCAGT+TGG | + | chr1_4:69072170-69072189 | None:intergenic | 50.0% |
| GGATGGTATAGTGGCTGATG+GGG | - | chr1_4:69072583-69072602 | Msa0181000:CDS | 50.0% | |
| GATGAGGATGCTGAAGTGAC+AGG | + | chr1_4:69073614-69073633 | None:intergenic | 50.0% | |
| AAAGATCGCCGGACGGAAAC+CGG | + | chr1_4:69071127-69071146 | None:intergenic | 55.0% | |
| GGTTCCCGAACCTAGAGGTT+TGG | - | chr1_4:69071435-69071454 | Msa0181000:intron | 55.0% | |
| CCGAACCTAGAGGTTTGGAG+TGG | - | chr1_4:69071440-69071459 | Msa0181000:intron | 55.0% | |
| TTGGAGTGGGAGATGAGACC+AGG | - | chr1_4:69071454-69071473 | Msa0181000:intron | 55.0% | |
| GATGAGACCAGGAGGCTTGT+TGG | - | chr1_4:69071465-69071484 | Msa0181000:intron | 55.0% | |
| CGTTGAACCAACAAGCCTCC+TGG | + | chr1_4:69071475-69071494 | None:intergenic | 55.0% | |
| CGAGTCTCGATCCGAGTCTA+AGG | + | chr1_4:69071503-69071522 | None:intergenic | 55.0% | |
| GTGGTGTATCCCAGTTGGAC+CGG | + | chr1_4:69072165-69072184 | None:intergenic | 55.0% | |
| AGTAGATAGGCTTGCAGGGC+AGG | - | chr1_4:69072376-69072395 | Msa0181000:CDS | 55.0% | |
| ! | GGTTCGGTTCCCGAACCTAG+AGG | - | chr1_4:69071430-69071449 | Msa0181000:intron | 60.0% |
| GAGTGGGAGATGAGACCAGG+AGG | - | chr1_4:69071457-69071476 | Msa0181000:intron | 60.0% | |
| !! | TTCCGGCACCGGTTTCCGTC+CGG | - | chr1_4:69071116-69071135 | Msa0181000:CDS | 65.0% |
| CGCCGGACGGAAACCGGTGC+CGG | + | chr1_4:69071121-69071140 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 69070751 | 69074002 | 69070751 | ID=Msa0181000;Name=Msa0181000 |
| chr1_4 | mRNA | 69070751 | 69074002 | 69070751 | ID=Msa0181000-mRNA-1;Parent=Msa0181000;Name=Msa0181000-mRNA-1;_AED=0.15;_eAED=0.15;_QI=643|1|1|1|1|1|4|311|333 |
| chr1_4 | exon | 69070751 | 69071448 | 69070751 | ID=Msa0181000-mRNA-1:exon:22929;Parent=Msa0181000-mRNA-1 |
| chr1_4 | exon | 69072122 | 69072268 | 69072122 | ID=Msa0181000-mRNA-1:exon:22928;Parent=Msa0181000-mRNA-1 |
| chr1_4 | exon | 69072356 | 69072612 | 69072356 | ID=Msa0181000-mRNA-1:exon:22927;Parent=Msa0181000-mRNA-1 |
| chr1_4 | exon | 69073149 | 69074002 | 69073149 | ID=Msa0181000-mRNA-1:exon:22926;Parent=Msa0181000-mRNA-1 |
| chr1_4 | five_prime_UTR | 69073360 | 69074002 | 69073360 | ID=Msa0181000-mRNA-1:five_prime_utr;Parent=Msa0181000-mRNA-1 |
| chr1_4 | CDS | 69073149 | 69073359 | 69073149 | ID=Msa0181000-mRNA-1:cds;Parent=Msa0181000-mRNA-1 |
| chr1_4 | CDS | 69072356 | 69072612 | 69072356 | ID=Msa0181000-mRNA-1:cds;Parent=Msa0181000-mRNA-1 |
| chr1_4 | CDS | 69072122 | 69072268 | 69072122 | ID=Msa0181000-mRNA-1:cds;Parent=Msa0181000-mRNA-1 |
| chr1_4 | CDS | 69071062 | 69071448 | 69071062 | ID=Msa0181000-mRNA-1:cds;Parent=Msa0181000-mRNA-1 |
| chr1_4 | three_prime_UTR | 69070751 | 69071061 | 69070751 | ID=Msa0181000-mRNA-1:three_prime_utr;Parent=Msa0181000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
