Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000480 | XP_003620655.1 | 98.429 | 191 | 3 | 0 | 1 | 191 | 1 | 191 | 1.98e-134 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000480 | sp|Q84X40|SPER1_ARATH | 44.509 | 173 | 71 | 6 | 21 | 191 | 29 | 178 | 2.04e-28 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000480 | G7KPU1 | 98.429 | 191 | 3 | 0 | 1 | 191 | 1 | 191 | 9.45e-135 | 384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072180 | Msa1000480 | 0.812175 | 4.839901e-51 | -8.615850e-47 |
| Msa0120450 | Msa1000480 | 0.807500 | 4.903896e-50 | -8.615850e-47 |
| Msa0657710 | Msa1000480 | 0.809984 | 1.444126e-50 | -8.615850e-47 |
| Msa0702800 | Msa1000480 | 0.816542 | 5.240591e-52 | -8.615850e-47 |
| Msa0758990 | Msa1000480 | 0.817191 | 3.748566e-52 | -8.615850e-47 |
| Msa0800120 | Msa1000480 | 0.822108 | 2.825829e-53 | -8.615850e-47 |
| Msa0828960 | Msa1000480 | 0.814402 | 1.568780e-51 | -8.615850e-47 |
| Msa0838210 | Msa1000480 | 0.822573 | 2.203744e-53 | -8.615850e-47 |
| Msa0198990 | Msa1000480 | 0.823589 | 1.276752e-53 | -8.615850e-47 |
| Msa1000480 | Msa1029820 | 0.808918 | 2.445500e-50 | -8.615850e-47 |
| Msa1000480 | Msa1068940 | 0.822882 | 1.867572e-53 | -8.615850e-47 |
| Msa1000480 | Msa1156710 | 0.818774 | 1.644416e-52 | -8.615850e-47 |
| Msa1000480 | Msa1184680 | 0.808558 | 2.918994e-50 | -8.615850e-47 |
| Msa1000480 | Msa1268360 | 0.818376 | 2.024350e-52 | -8.615850e-47 |
| Msa1000480 | Msa1284020 | 0.838160 | 3.392223e-57 | -8.615850e-47 |
| Msa1000480 | Msa1322980 | 0.801690 | 7.993405e-49 | -8.615850e-47 |
| Msa1000480 | Msa1323070 | 0.845056 | 5.152844e-59 | -8.615850e-47 |
| Msa1000480 | Msa1407810 | 0.812674 | 3.765337e-51 | -8.615850e-47 |
| Msa1000480 | Msa1422860 | 0.807760 | 4.319226e-50 | -8.615850e-47 |
| Msa1000480 | Msa1433360 | 0.815648 | 8.299060e-52 | -8.615850e-47 |
| Msa1000480 | Msa1437780 | 0.813259 | 2.801501e-51 | -8.615850e-47 |
| Msa1000480 | Msa1439250 | 0.828295 | 9.732930e-55 | -8.615850e-47 |
| Msa0241750 | Msa1000480 | 0.809998 | 1.434362e-50 | -8.615850e-47 |
| Msa0333770 | Msa1000480 | 0.809158 | 2.173007e-50 | -8.615850e-47 |
| Msa0549130 | Msa1000480 | 0.822068 | 2.886622e-53 | -8.615850e-47 |
| Msa0567330 | Msa1000480 | 0.821302 | 4.340645e-53 | -8.615850e-47 |
| Msa0576320 | Msa1000480 | 0.810699 | 1.012256e-50 | -8.615850e-47 |
| Msa0900330 | Msa1000480 | 0.906051 | 2.241336e-80 | -8.615850e-47 |
| Msa0910170 | Msa1000480 | 0.808364 | 3.210946e-50 | -8.615850e-47 |
| Msa0928450 | Msa1000480 | 0.916853 | 1.079638e-85 | -8.615850e-47 |
| Msa0965950 | Msa1000480 | 0.858927 | 5.884312e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000480 | MtrunA17_Chr6g0486541 | 98.429 | 191 | 3 | 0 | 1 | 191 | 1 | 191 | 1.82e-138 | 384 |
| Msa1000480 | MtrunA17_Chr8g0390151 | 46.977 | 215 | 64 | 9 | 1 | 191 | 1 | 189 | 8.27e-38 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000480 | AT2G20080.1 | 44.509 | 173 | 71 | 6 | 21 | 191 | 29 | 178 | 2.07e-29 | 107 |
| Msa1000480 | AT2G20080.3 | 41.071 | 168 | 72 | 6 | 3 | 159 | 2 | 153 | 1.61e-24 | 94.7 |
| Msa1000480 | AT4G28840.1 | 40.887 | 203 | 93 | 9 | 3 | 189 | 2 | 193 | 3.06e-21 | 86.7 |
| Msa1000480 | AT4G28840.3 | 47.407 | 135 | 60 | 5 | 3 | 127 | 2 | 135 | 1.32e-19 | 81.3 |
| Msa1000480 | AT4G28840.2 | 47.101 | 138 | 56 | 7 | 3 | 127 | 2 | 135 | 3.38e-19 | 81.3 |
| Msa1000480 | AT2G20080.2 | 35.673 | 171 | 62 | 5 | 21 | 191 | 29 | 151 | 8.68e-16 | 71.2 |
Find 48 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGATGGTAGTAATTATTT+TGG | 0.191792 | 6_4:+83399727 | Msa1000480:CDS |
| GGAACCACTTCTATGCTTCT+TGG | 0.308003 | 6_4:-83401755 | None:intergenic |
| TTTATCTCAAATCAGATTAT+GGG | 0.316736 | 6_4:+83401291 | Msa1000480:intron |
| TGGCTTTCAACCAAACATTA+TGG | 0.318543 | 6_4:+83400214 | Msa1000480:CDS |
| GATAGAACAAACATTAGATT+TGG | 0.321878 | 6_4:+83401076 | Msa1000480:CDS |
| AGGATTAGGTGTTGCTCAAT+TGG | 0.323559 | 6_4:+83399840 | Msa1000480:CDS |
| TTACATGGTGAAATGGCTTA+TGG | 0.335235 | 6_4:+83399874 | Msa1000480:CDS |
| AATCCTCTTTGTGGTTGCTT+TGG | 0.342523 | 6_4:-83399823 | None:intergenic |
| ATTACACTTACCATAATGTT+TGG | 0.346534 | 6_4:-83400224 | None:intergenic |
| CTTACATTGATAAAATTAGA+TGG | 0.365985 | 6_4:-83399925 | None:intergenic |
| CTTAGGAATAATTGCATAGC+TGG | 0.375967 | 6_4:-83399576 | None:intergenic |
| AATTAGATTACATGGTGAAA+TGG | 0.382742 | 6_4:+83399867 | Msa1000480:CDS |
| GAATATGGTGTTTGTATTGT+TGG | 0.386195 | 6_4:-83400131 | None:intergenic |
| TACCTTGATGAATCAAATAC+TGG | 0.388350 | 6_4:-83401109 | None:intergenic |
| TCACAATCAAGAACCAGATT+TGG | 0.396966 | 6_4:+83401807 | Msa1000480:CDS |
| ATATCAAGGTAGAGATATAA+AGG | 0.407617 | 6_4:-83399687 | None:intergenic |
| ATATAGAAGGAATTAGAATA+TGG | 0.411301 | 6_4:+83399708 | Msa1000480:exon |
| TCTCTACCTTGATATATAGA+AGG | 0.415534 | 6_4:+83399695 | Msa1000480:five_prime_UTR |
| AAGCAACCACAAAGAGGATT+AGG | 0.418208 | 6_4:+83399826 | Msa1000480:CDS |
| GATAATCTTAGCTCCAAATC+TGG | 0.418995 | 6_4:-83401820 | None:intergenic |
| TTCTGAGTTCTGACTGCTTG+TGG | 0.422106 | 6_4:-83401776 | None:intergenic |
| GATGATGGTATTGATGAATA+TGG | 0.430782 | 6_4:-83400146 | None:intergenic |
| AAGCTATTAGCACAAAACTT+AGG | 0.436218 | 6_4:-83399593 | None:intergenic |
| GCAACACCTAATCCTCTTTG+TGG | 0.446963 | 6_4:-83399832 | None:intergenic |
| CTAATTCCTTCTATATATCA+AGG | 0.447746 | 6_4:-83399701 | None:intergenic |
| AGTGGATCTTCATCAAGAAA+AGG | 0.450578 | 6_4:+83399778 | Msa1000480:CDS |
| ATAAAGATCATATAGAATCT+AGG | 0.453037 | 6_4:+83399510 | None:intergenic |
| AAATCCCTTAAAACCTTGCT+TGG | 0.460210 | 6_4:-83399642 | None:intergenic |
| CTTACATATAGGTTAAGTAA+TGG | 0.475445 | 6_4:-83401352 | None:intergenic |
| TTGATAAAATTAGATGGATG+AGG | 0.480000 | 6_4:-83399919 | None:intergenic |
| GTGGATCTTCATCAAGAAAA+GGG | 0.515222 | 6_4:+83399779 | Msa1000480:CDS |
| AGCCAGTATTTGATTCATCA+AGG | 0.515828 | 6_4:+83401107 | Msa1000480:CDS |
| ATGTTTGTTCTATCATATTG+AGG | 0.520659 | 6_4:-83401067 | None:intergenic |
| AAGTAATGGTTTAGTTGTGG+TGG | 0.522040 | 6_4:-83401338 | None:intergenic |
| GTTAAGTAATGGTTTAGTTG+TGG | 0.530973 | 6_4:-83401341 | None:intergenic |
| ATGGGGAATGAAAGAGTAAG+TGG | 0.534075 | 6_4:+83399760 | Msa1000480:CDS |
| GGAGATCTCATTTCCAAGCA+AGG | 0.534949 | 6_4:+83399629 | Msa1000480:five_prime_UTR |
| TTGTTCTATCATATTGAGGT+AGG | 0.542902 | 6_4:-83401063 | None:intergenic |
| GATGGATGAGGGTTGTGTAG+AGG | 0.544287 | 6_4:-83399907 | None:intergenic |
| TGATAAAATTAGATGGATGA+GGG | 0.547151 | 6_4:-83399918 | None:intergenic |
| AGAGATATAAAGGTATATGA+TGG | 0.549742 | 6_4:-83399677 | None:intergenic |
| AGTTGTGGTGGATTGAGAAG+TGG | 0.574351 | 6_4:-83401326 | None:intergenic |
| AGAAGGAATTAGAATATGGA+TGG | 0.580004 | 6_4:+83399712 | Msa1000480:exon |
| GGATGAGGGTTGTGTAGAGG+AGG | 0.604170 | 6_4:-83399904 | None:intergenic |
| AAACCAAAGCAACCACAAAG+AGG | 0.610893 | 6_4:+83399820 | Msa1000480:CDS |
| GGTGGATTGAGAAGTGGCAT+TGG | 0.615657 | 6_4:-83401320 | None:intergenic |
| GATACCAAGAAGCATAGAAG+TGG | 0.627284 | 6_4:+83401751 | Msa1000480:CDS |
| ACATCATACTCAGCTTCACA+TGG | 0.638359 | 6_4:+83400194 | Msa1000480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTTTTTTATAAAT+AGG | + | chr6_4:83401714-83401733 | Msa1000480:intron | 0.0% |
| !!! | TTATTTATTTTTTTATAAAT+AGG | + | chr6_4:83401714-83401733 | Msa1000480:intron | 0.0% |
| !!! | TAAAAGCATAAATAAAATTT+GGG | - | chr6_4:83400269-83400288 | None:intergenic | 10.0% |
| !!! | TTAAAAGCATAAATAAAATT+TGG | - | chr6_4:83400270-83400289 | None:intergenic | 10.0% |
| !!! | AATTTTATTTATGCTTTTAA+TGG | + | chr6_4:83400270-83400289 | Msa1000480:intron | 10.0% |
| !!! | TTCATTTTTTTGTAATTTAT+TGG | - | chr6_4:83401678-83401697 | None:intergenic | 10.0% |
| !!! | TAAAAGCATAAATAAAATTT+GGG | - | chr6_4:83400269-83400288 | None:intergenic | 10.0% |
| !!! | TTAAAAGCATAAATAAAATT+TGG | - | chr6_4:83400270-83400289 | None:intergenic | 10.0% |
| !!! | AATTTTATTTATGCTTTTAA+TGG | + | chr6_4:83400270-83400289 | Msa1000480:intron | 10.0% |
| !!! | TTCATTTTTTTGTAATTTAT+TGG | - | chr6_4:83401678-83401697 | None:intergenic | 10.0% |
| !!! | TTTTTACTTGGATTAAATAA+AGG | + | chr6_4:83400050-83400069 | Msa1000480:intron | 15.0% |
| !!! | ATTTTTCAATTTTATCTGAT+TGG | - | chr6_4:83400861-83400880 | None:intergenic | 15.0% |
| !!! | TTTACATTTTGATACATTAT+CGG | - | chr6_4:83401622-83401641 | None:intergenic | 15.0% |
| !!! | TTTTTACTTGGATTAAATAA+AGG | + | chr6_4:83400050-83400069 | Msa1000480:intron | 15.0% |
| !!! | ATTTTTCAATTTTATCTGAT+TGG | - | chr6_4:83400861-83400880 | None:intergenic | 15.0% |
| !!! | TTTACATTTTGATACATTAT+CGG | - | chr6_4:83401622-83401641 | None:intergenic | 15.0% |
| !! | AATAGCTTAAAAAATAGCAT+AGG | + | chr6_4:83399608-83399627 | Msa1000480:five_prime_UTR | 20.0% |
| !! | ATATAGAAGGAATTAGAATA+TGG | + | chr6_4:83399708-83399727 | Msa1000480:exon | 20.0% |
| !! | TTGGAAAAAATTAGATTACA+TGG | + | chr6_4:83399859-83399878 | Msa1000480:CDS | 20.0% |
| !! | CTTACATTGATAAAATTAGA+TGG | - | chr6_4:83399928-83399947 | None:intergenic | 20.0% |
| !!! | TGTAATTTTTTTGCTTTTCT+TGG | + | chr6_4:83400241-83400260 | Msa1000480:intron | 20.0% |
| !! | ACAAAAACAATATATTCAAG+TGG | + | chr6_4:83400396-83400415 | Msa1000480:intron | 20.0% |
| !! | CAAAAACAATATATTCAAGT+GGG | + | chr6_4:83400397-83400416 | Msa1000480:intron | 20.0% |
| !! | ATCCAAAAATAACATTTCTA+GGG | - | chr6_4:83400557-83400576 | None:intergenic | 20.0% |
| !!! | TGCTTTAATCTTTTTTTTGA+AGG | + | chr6_4:83400697-83400716 | Msa1000480:intron | 20.0% |
| !! | ATGTAAGAATTAATTCTCTA+AGG | - | chr6_4:83400885-83400904 | None:intergenic | 20.0% |
| !!! | TAATAATAATGGAACTAATG+TGG | - | chr6_4:83401149-83401168 | None:intergenic | 20.0% |
| !! | TTTATCTCAAATCAGATTAT+GGG | + | chr6_4:83401291-83401310 | Msa1000480:intron | 20.0% |
| !! | GAAAATGAATTCTTACATAT+AGG | - | chr6_4:83401366-83401385 | None:intergenic | 20.0% |
| !! | TGATGATTACAATTAATTGA+CGG | - | chr6_4:83401508-83401527 | None:intergenic | 20.0% |
| !!! | AATTAATTGTGATTTGTTGA+CGG | + | chr6_4:83401580-83401599 | Msa1000480:intron | 20.0% |
| !! | AAATCATAGAAAATATACCT+AGG | + | chr6_4:83401639-83401658 | Msa1000480:intron | 20.0% |
| !! | AATAGCTTAAAAAATAGCAT+AGG | + | chr6_4:83399608-83399627 | Msa1000480:five_prime_UTR | 20.0% |
| !! | ATATAGAAGGAATTAGAATA+TGG | + | chr6_4:83399708-83399727 | Msa1000480:exon | 20.0% |
| !! | TTGGAAAAAATTAGATTACA+TGG | + | chr6_4:83399859-83399878 | Msa1000480:CDS | 20.0% |
| !! | CTTACATTGATAAAATTAGA+TGG | - | chr6_4:83399928-83399947 | None:intergenic | 20.0% |
| !!! | TGTAATTTTTTTGCTTTTCT+TGG | + | chr6_4:83400241-83400260 | Msa1000480:intron | 20.0% |
| !! | ACAAAAACAATATATTCAAG+TGG | + | chr6_4:83400396-83400415 | Msa1000480:intron | 20.0% |
| !! | CAAAAACAATATATTCAAGT+GGG | + | chr6_4:83400397-83400416 | Msa1000480:intron | 20.0% |
| !! | ATCCAAAAATAACATTTCTA+GGG | - | chr6_4:83400557-83400576 | None:intergenic | 20.0% |
| !!! | TGCTTTAATCTTTTTTTTGA+AGG | + | chr6_4:83400697-83400716 | Msa1000480:intron | 20.0% |
| !! | ATGTAAGAATTAATTCTCTA+AGG | - | chr6_4:83400885-83400904 | None:intergenic | 20.0% |
| !!! | TAATAATAATGGAACTAATG+TGG | - | chr6_4:83401149-83401168 | None:intergenic | 20.0% |
| !! | TTTATCTCAAATCAGATTAT+GGG | + | chr6_4:83401291-83401310 | Msa1000480:intron | 20.0% |
| !! | GAAAATGAATTCTTACATAT+AGG | - | chr6_4:83401366-83401385 | None:intergenic | 20.0% |
| !! | TGATGATTACAATTAATTGA+CGG | - | chr6_4:83401508-83401527 | None:intergenic | 20.0% |
| !!! | AATTAATTGTGATTTGTTGA+CGG | + | chr6_4:83401580-83401599 | Msa1000480:intron | 20.0% |
| !! | AAATCATAGAAAATATACCT+AGG | + | chr6_4:83401639-83401658 | Msa1000480:intron | 20.0% |
| !! | AGAGATATAAAGGTATATGA+TGG | - | chr6_4:83399680-83399699 | None:intergenic | 25.0% |
| ! | ATATCAAGGTAGAGATATAA+AGG | - | chr6_4:83399690-83399709 | None:intergenic | 25.0% |
| ! | CTAATTCCTTCTATATATCA+AGG | - | chr6_4:83399704-83399723 | None:intergenic | 25.0% |
| !! | ATGGATGGTAGTAATTATTT+TGG | + | chr6_4:83399727-83399746 | Msa1000480:CDS | 25.0% |
| ! | AATTAGATTACATGGTGAAA+TGG | + | chr6_4:83399867-83399886 | Msa1000480:CDS | 25.0% |
| ! | TGATAAAATTAGATGGATGA+GGG | - | chr6_4:83399921-83399940 | None:intergenic | 25.0% |
| ! | TTGATAAAATTAGATGGATG+AGG | - | chr6_4:83399922-83399941 | None:intergenic | 25.0% |
| ! | ATTACACTTACCATAATGTT+TGG | - | chr6_4:83400227-83400246 | None:intergenic | 25.0% |
| ! | ACAAAGGAAAGAAAAATCAA+GGG | - | chr6_4:83400464-83400483 | None:intergenic | 25.0% |
| ! | AACAAAGGAAAGAAAAATCA+AGG | - | chr6_4:83400465-83400484 | None:intergenic | 25.0% |
| !!! | AATAACATTTCTAGGGTTAT+TGG | - | chr6_4:83400550-83400569 | None:intergenic | 25.0% |
| !!! | AACCCTAGAAATGTTATTTT+TGG | + | chr6_4:83400552-83400571 | Msa1000480:intron | 25.0% |
| ! | GATCCAAAAATAACATTTCT+AGG | - | chr6_4:83400558-83400577 | None:intergenic | 25.0% |
| !!! | AGAAATGTTATTTTTGGATC+TGG | + | chr6_4:83400558-83400577 | Msa1000480:intron | 25.0% |
| !!! | GAAATGTTATTTTTGGATCT+GGG | + | chr6_4:83400559-83400578 | Msa1000480:intron | 25.0% |
| ! | GATATTAAGAAGAGATTACA+AGG | - | chr6_4:83400999-83401018 | None:intergenic | 25.0% |
| !! | AATTTCTTTTTCTATGCAGA+TGG | + | chr6_4:83401039-83401058 | Msa1000480:intron | 25.0% |
| !! | ATTTCTTTTTCTATGCAGAT+GGG | + | chr6_4:83401040-83401059 | Msa1000480:intron | 25.0% |
| ! | ATGTTTGTTCTATCATATTG+AGG | - | chr6_4:83401070-83401089 | None:intergenic | 25.0% |
| ! | GATAGAACAAACATTAGATT+TGG | + | chr6_4:83401076-83401095 | Msa1000480:CDS | 25.0% |
| ! | TGATGAATTTCTTGCTTATA+TGG | + | chr6_4:83401261-83401280 | Msa1000480:intron | 25.0% |
| ! | CTTTATCTCAAATCAGATTA+TGG | + | chr6_4:83401290-83401309 | Msa1000480:intron | 25.0% |
| ! | CTTACATATAGGTTAAGTAA+TGG | - | chr6_4:83401355-83401374 | None:intergenic | 25.0% |
| ! | CTTTAATCATAATCAGCTTT+AGG | + | chr6_4:83401547-83401566 | Msa1000480:intron | 25.0% |
| ! | TTGGTATATTATTAGAACCT+AGG | - | chr6_4:83401659-83401678 | None:intergenic | 25.0% |
| !! | AGAGATATAAAGGTATATGA+TGG | - | chr6_4:83399680-83399699 | None:intergenic | 25.0% |
| ! | ATATCAAGGTAGAGATATAA+AGG | - | chr6_4:83399690-83399709 | None:intergenic | 25.0% |
| ! | CTAATTCCTTCTATATATCA+AGG | - | chr6_4:83399704-83399723 | None:intergenic | 25.0% |
| !! | ATGGATGGTAGTAATTATTT+TGG | + | chr6_4:83399727-83399746 | Msa1000480:CDS | 25.0% |
| ! | AATTAGATTACATGGTGAAA+TGG | + | chr6_4:83399867-83399886 | Msa1000480:CDS | 25.0% |
| ! | TGATAAAATTAGATGGATGA+GGG | - | chr6_4:83399921-83399940 | None:intergenic | 25.0% |
| ! | TTGATAAAATTAGATGGATG+AGG | - | chr6_4:83399922-83399941 | None:intergenic | 25.0% |
| ! | ATTACACTTACCATAATGTT+TGG | - | chr6_4:83400227-83400246 | None:intergenic | 25.0% |
| ! | ACAAAGGAAAGAAAAATCAA+GGG | - | chr6_4:83400464-83400483 | None:intergenic | 25.0% |
| ! | AACAAAGGAAAGAAAAATCA+AGG | - | chr6_4:83400465-83400484 | None:intergenic | 25.0% |
| !!! | AATAACATTTCTAGGGTTAT+TGG | - | chr6_4:83400550-83400569 | None:intergenic | 25.0% |
| !!! | AACCCTAGAAATGTTATTTT+TGG | + | chr6_4:83400552-83400571 | Msa1000480:intron | 25.0% |
| ! | GATCCAAAAATAACATTTCT+AGG | - | chr6_4:83400558-83400577 | None:intergenic | 25.0% |
| !!! | AGAAATGTTATTTTTGGATC+TGG | + | chr6_4:83400558-83400577 | Msa1000480:intron | 25.0% |
| !!! | GAAATGTTATTTTTGGATCT+GGG | + | chr6_4:83400559-83400578 | Msa1000480:intron | 25.0% |
| ! | GATATTAAGAAGAGATTACA+AGG | - | chr6_4:83400999-83401018 | None:intergenic | 25.0% |
| !! | AATTTCTTTTTCTATGCAGA+TGG | + | chr6_4:83401039-83401058 | Msa1000480:intron | 25.0% |
| !! | ATTTCTTTTTCTATGCAGAT+GGG | + | chr6_4:83401040-83401059 | Msa1000480:intron | 25.0% |
| ! | ATGTTTGTTCTATCATATTG+AGG | - | chr6_4:83401070-83401089 | None:intergenic | 25.0% |
| ! | GATAGAACAAACATTAGATT+TGG | + | chr6_4:83401076-83401095 | Msa1000480:CDS | 25.0% |
| ! | TGATGAATTTCTTGCTTATA+TGG | + | chr6_4:83401261-83401280 | Msa1000480:intron | 25.0% |
| ! | CTTTATCTCAAATCAGATTA+TGG | + | chr6_4:83401290-83401309 | Msa1000480:intron | 25.0% |
| ! | CTTACATATAGGTTAAGTAA+TGG | - | chr6_4:83401355-83401374 | None:intergenic | 25.0% |
| ! | CTTTAATCATAATCAGCTTT+AGG | + | chr6_4:83401547-83401566 | Msa1000480:intron | 25.0% |
| ! | TTGGTATATTATTAGAACCT+AGG | - | chr6_4:83401659-83401678 | None:intergenic | 25.0% |
| AAGCTATTAGCACAAAACTT+AGG | - | chr6_4:83399596-83399615 | None:intergenic | 30.0% | |
| !! | ATTTCCAAGCAAGGTTTTAA+GGG | + | chr6_4:83399638-83399657 | Msa1000480:five_prime_UTR | 30.0% |
| TCTCTACCTTGATATATAGA+AGG | + | chr6_4:83399695-83399714 | Msa1000480:five_prime_UTR | 30.0% | |
| AGAAGGAATTAGAATATGGA+TGG | + | chr6_4:83399712-83399731 | Msa1000480:exon | 30.0% | |
| !!! | TTATTTTGGAGATTCGAACA+TGG | + | chr6_4:83399741-83399760 | Msa1000480:CDS | 30.0% |
| !! | TATTTTGGAGATTCGAACAT+GGG | + | chr6_4:83399742-83399761 | Msa1000480:CDS | 30.0% |
| !! | AGTAGTTTGATTTGAGCAAA+GGG | - | chr6_4:83399968-83399987 | None:intergenic | 30.0% |
| !! | TTTGTTTCTGATGATCATCT+AGG | + | chr6_4:83400103-83400122 | Msa1000480:intron | 30.0% |
| GAATATGGTGTTTGTATTGT+TGG | - | chr6_4:83400134-83400153 | None:intergenic | 30.0% | |
| !! | GATGATGGTATTGATGAATA+TGG | - | chr6_4:83400149-83400168 | None:intergenic | 30.0% |
| GAGTAAGAAAAAGATGATGA+TGG | - | chr6_4:83400164-83400183 | None:intergenic | 30.0% | |
| CTCATCACAAAAGAATGAAA+AGG | - | chr6_4:83400308-83400327 | None:intergenic | 30.0% | |
| AATAGTTACCTTGATTGCTA+TGG | - | chr6_4:83400434-83400453 | None:intergenic | 30.0% | |
| ATGTCATGTCATTACAACAA+AGG | - | chr6_4:83400480-83400499 | None:intergenic | 30.0% | |
| AATTGTGTATTACTAACCCT+AGG | + | chr6_4:83400622-83400641 | Msa1000480:intron | 30.0% | |
| TTGTTCTATCATATTGAGGT+AGG | - | chr6_4:83401066-83401085 | None:intergenic | 30.0% | |
| TACCTTGATGAATCAAATAC+TGG | - | chr6_4:83401112-83401131 | None:intergenic | 30.0% | |
| ! | AATAATGGAACTAATGTGGA+TGG | - | chr6_4:83401145-83401164 | None:intergenic | 30.0% |
| GTTAAGTAATGGTTTAGTTG+TGG | - | chr6_4:83401344-83401363 | None:intergenic | 30.0% | |
| AAGCTATTAGCACAAAACTT+AGG | - | chr6_4:83399596-83399615 | None:intergenic | 30.0% | |
| !! | ATTTCCAAGCAAGGTTTTAA+GGG | + | chr6_4:83399638-83399657 | Msa1000480:five_prime_UTR | 30.0% |
| TCTCTACCTTGATATATAGA+AGG | + | chr6_4:83399695-83399714 | Msa1000480:five_prime_UTR | 30.0% | |
| AGAAGGAATTAGAATATGGA+TGG | + | chr6_4:83399712-83399731 | Msa1000480:exon | 30.0% | |
| !!! | TTATTTTGGAGATTCGAACA+TGG | + | chr6_4:83399741-83399760 | Msa1000480:CDS | 30.0% |
| !! | TATTTTGGAGATTCGAACAT+GGG | + | chr6_4:83399742-83399761 | Msa1000480:CDS | 30.0% |
| !! | AGTAGTTTGATTTGAGCAAA+GGG | - | chr6_4:83399968-83399987 | None:intergenic | 30.0% |
| !! | TTTGTTTCTGATGATCATCT+AGG | + | chr6_4:83400103-83400122 | Msa1000480:intron | 30.0% |
| GAATATGGTGTTTGTATTGT+TGG | - | chr6_4:83400134-83400153 | None:intergenic | 30.0% | |
| !! | GATGATGGTATTGATGAATA+TGG | - | chr6_4:83400149-83400168 | None:intergenic | 30.0% |
| GAGTAAGAAAAAGATGATGA+TGG | - | chr6_4:83400164-83400183 | None:intergenic | 30.0% | |
| CTCATCACAAAAGAATGAAA+AGG | - | chr6_4:83400308-83400327 | None:intergenic | 30.0% | |
| AATAGTTACCTTGATTGCTA+TGG | - | chr6_4:83400434-83400453 | None:intergenic | 30.0% | |
| ATGTCATGTCATTACAACAA+AGG | - | chr6_4:83400480-83400499 | None:intergenic | 30.0% | |
| AATTGTGTATTACTAACCCT+AGG | + | chr6_4:83400622-83400641 | Msa1000480:intron | 30.0% | |
| TTGTTCTATCATATTGAGGT+AGG | - | chr6_4:83401066-83401085 | None:intergenic | 30.0% | |
| TACCTTGATGAATCAAATAC+TGG | - | chr6_4:83401112-83401131 | None:intergenic | 30.0% | |
| ! | AATAATGGAACTAATGTGGA+TGG | - | chr6_4:83401145-83401164 | None:intergenic | 30.0% |
| GTTAAGTAATGGTTTAGTTG+TGG | - | chr6_4:83401344-83401363 | None:intergenic | 30.0% | |
| CTTAGGAATAATTGCATAGC+TGG | - | chr6_4:83399579-83399598 | None:intergenic | 35.0% | |
| ! | CATTTCCAAGCAAGGTTTTA+AGG | + | chr6_4:83399637-83399656 | Msa1000480:five_prime_UTR | 35.0% |
| AAATCCCTTAAAACCTTGCT+TGG | - | chr6_4:83399645-83399664 | None:intergenic | 35.0% | |
| !!! | AGGTTTTAAGGGATTTGCAA+AGG | + | chr6_4:83399649-83399668 | Msa1000480:five_prime_UTR | 35.0% |
| !! | ATTTTGGAGATTCGAACATG+GGG | + | chr6_4:83399743-83399762 | Msa1000480:CDS | 35.0% |
| AGTGGATCTTCATCAAGAAA+AGG | + | chr6_4:83399778-83399797 | Msa1000480:CDS | 35.0% | |
| GTGGATCTTCATCAAGAAAA+GGG | + | chr6_4:83399779-83399798 | Msa1000480:CDS | 35.0% | |
| TTACATGGTGAAATGGCTTA+TGG | + | chr6_4:83399874-83399893 | Msa1000480:CDS | 35.0% | |
| !! | GAGTAGTTTGATTTGAGCAA+AGG | - | chr6_4:83399969-83399988 | None:intergenic | 35.0% |
| TGGCTTTCAACCAAACATTA+TGG | + | chr6_4:83400214-83400233 | Msa1000480:CDS | 35.0% | |
| TAATGTCACCATAGCAATCA+AGG | + | chr6_4:83400423-83400442 | Msa1000480:intron | 35.0% | |
| AACCAATTTCTTCTCACCTA+GGG | - | chr6_4:83400641-83400660 | None:intergenic | 35.0% | |
| AAACCAATTTCTTCTCACCT+AGG | - | chr6_4:83400642-83400661 | None:intergenic | 35.0% | |
| AGCCAGTATTTGATTCATCA+AGG | + | chr6_4:83401107-83401126 | Msa1000480:CDS | 35.0% | |
| AAGTAATGGTTTAGTTGTGG+TGG | - | chr6_4:83401341-83401360 | None:intergenic | 35.0% | |
| TCACAATCAAGAACCAGATT+TGG | + | chr6_4:83401807-83401826 | Msa1000480:CDS | 35.0% | |
| GATAATCTTAGCTCCAAATC+TGG | - | chr6_4:83401823-83401842 | None:intergenic | 35.0% | |
| CTTAGGAATAATTGCATAGC+TGG | - | chr6_4:83399579-83399598 | None:intergenic | 35.0% | |
| ! | CATTTCCAAGCAAGGTTTTA+AGG | + | chr6_4:83399637-83399656 | Msa1000480:five_prime_UTR | 35.0% |
| AAATCCCTTAAAACCTTGCT+TGG | - | chr6_4:83399645-83399664 | None:intergenic | 35.0% | |
| !!! | AGGTTTTAAGGGATTTGCAA+AGG | + | chr6_4:83399649-83399668 | Msa1000480:five_prime_UTR | 35.0% |
| !! | ATTTTGGAGATTCGAACATG+GGG | + | chr6_4:83399743-83399762 | Msa1000480:CDS | 35.0% |
| AGTGGATCTTCATCAAGAAA+AGG | + | chr6_4:83399778-83399797 | Msa1000480:CDS | 35.0% | |
| GTGGATCTTCATCAAGAAAA+GGG | + | chr6_4:83399779-83399798 | Msa1000480:CDS | 35.0% | |
| TTACATGGTGAAATGGCTTA+TGG | + | chr6_4:83399874-83399893 | Msa1000480:CDS | 35.0% | |
| !! | GAGTAGTTTGATTTGAGCAA+AGG | - | chr6_4:83399969-83399988 | None:intergenic | 35.0% |
| TGGCTTTCAACCAAACATTA+TGG | + | chr6_4:83400214-83400233 | Msa1000480:CDS | 35.0% | |
| TAATGTCACCATAGCAATCA+AGG | + | chr6_4:83400423-83400442 | Msa1000480:intron | 35.0% | |
| AACCAATTTCTTCTCACCTA+GGG | - | chr6_4:83400641-83400660 | None:intergenic | 35.0% | |
| AAACCAATTTCTTCTCACCT+AGG | - | chr6_4:83400642-83400661 | None:intergenic | 35.0% | |
| AGCCAGTATTTGATTCATCA+AGG | + | chr6_4:83401107-83401126 | Msa1000480:CDS | 35.0% | |
| AAGTAATGGTTTAGTTGTGG+TGG | - | chr6_4:83401341-83401360 | None:intergenic | 35.0% | |
| TCACAATCAAGAACCAGATT+TGG | + | chr6_4:83401807-83401826 | Msa1000480:CDS | 35.0% | |
| GATAATCTTAGCTCCAAATC+TGG | - | chr6_4:83401823-83401842 | None:intergenic | 35.0% | |
| ATGGGGAATGAAAGAGTAAG+TGG | + | chr6_4:83399760-83399779 | Msa1000480:CDS | 40.0% | |
| AAACCAAAGCAACCACAAAG+AGG | + | chr6_4:83399820-83399839 | Msa1000480:CDS | 40.0% | |
| AATCCTCTTTGTGGTTGCTT+TGG | - | chr6_4:83399826-83399845 | None:intergenic | 40.0% | |
| AAGCAACCACAAAGAGGATT+AGG | + | chr6_4:83399826-83399845 | Msa1000480:CDS | 40.0% | |
| !! | AGGATTAGGTGTTGCTCAAT+TGG | + | chr6_4:83399840-83399859 | Msa1000480:CDS | 40.0% |
| ACATCATACTCAGCTTCACA+TGG | + | chr6_4:83400194-83400213 | Msa1000480:CDS | 40.0% | |
| AACCCTAGGTGAGAAGAAAT+TGG | + | chr6_4:83400636-83400655 | Msa1000480:intron | 40.0% | |
| ! | ATTTTCCACAGTAGCACACT+AGG | - | chr6_4:83400824-83400843 | None:intergenic | 40.0% |
| ! | GATACCAAGAAGCATAGAAG+TGG | + | chr6_4:83401751-83401770 | Msa1000480:CDS | 40.0% |
| ATGGGGAATGAAAGAGTAAG+TGG | + | chr6_4:83399760-83399779 | Msa1000480:CDS | 40.0% | |
| AAACCAAAGCAACCACAAAG+AGG | + | chr6_4:83399820-83399839 | Msa1000480:CDS | 40.0% | |
| AATCCTCTTTGTGGTTGCTT+TGG | - | chr6_4:83399826-83399845 | None:intergenic | 40.0% | |
| AAGCAACCACAAAGAGGATT+AGG | + | chr6_4:83399826-83399845 | Msa1000480:CDS | 40.0% | |
| !! | AGGATTAGGTGTTGCTCAAT+TGG | + | chr6_4:83399840-83399859 | Msa1000480:CDS | 40.0% |
| ACATCATACTCAGCTTCACA+TGG | + | chr6_4:83400194-83400213 | Msa1000480:CDS | 40.0% | |
| AACCCTAGGTGAGAAGAAAT+TGG | + | chr6_4:83400636-83400655 | Msa1000480:intron | 40.0% | |
| ! | ATTTTCCACAGTAGCACACT+AGG | - | chr6_4:83400824-83400843 | None:intergenic | 40.0% |
| ! | GATACCAAGAAGCATAGAAG+TGG | + | chr6_4:83401751-83401770 | Msa1000480:CDS | 40.0% |
| GGAGATCTCATTTCCAAGCA+AGG | + | chr6_4:83399629-83399648 | Msa1000480:five_prime_UTR | 45.0% | |
| GCAACACCTAATCCTCTTTG+TGG | - | chr6_4:83399835-83399854 | None:intergenic | 45.0% | |
| ! | TGACTCTCTTTTGGTCTGGT+TGG | + | chr6_4:83400583-83400602 | Msa1000480:intron | 45.0% |
| ! | TTATGCCTAGTGTGCTACTG+TGG | + | chr6_4:83400816-83400835 | Msa1000480:intron | 45.0% |
| !! | AGTTGTGGTGGATTGAGAAG+TGG | - | chr6_4:83401329-83401348 | None:intergenic | 45.0% |
| GGAACCACTTCTATGCTTCT+TGG | - | chr6_4:83401758-83401777 | None:intergenic | 45.0% | |
| ! | TTCTGAGTTCTGACTGCTTG+TGG | - | chr6_4:83401779-83401798 | None:intergenic | 45.0% |
| GGAGATCTCATTTCCAAGCA+AGG | + | chr6_4:83399629-83399648 | Msa1000480:five_prime_UTR | 45.0% | |
| GCAACACCTAATCCTCTTTG+TGG | - | chr6_4:83399835-83399854 | None:intergenic | 45.0% | |
| ! | TGACTCTCTTTTGGTCTGGT+TGG | + | chr6_4:83400583-83400602 | Msa1000480:intron | 45.0% |
| ! | TTATGCCTAGTGTGCTACTG+TGG | + | chr6_4:83400816-83400835 | Msa1000480:intron | 45.0% |
| !! | AGTTGTGGTGGATTGAGAAG+TGG | - | chr6_4:83401329-83401348 | None:intergenic | 45.0% |
| GGAACCACTTCTATGCTTCT+TGG | - | chr6_4:83401758-83401777 | None:intergenic | 45.0% | |
| ! | TTCTGAGTTCTGACTGCTTG+TGG | - | chr6_4:83401779-83401798 | None:intergenic | 45.0% |
| !!! | AAAAAAAATATTTTTTTACT+TGG | + | chr6_4:83400038-83400057 | Msa1000480:intron | 5.0% |
| !! | TTGATTATTATTAATAATAA+TGG | - | chr6_4:83401160-83401179 | None:intergenic | 5.0% |
| !! | AATAAATAAAAAATTATTGA+AGG | - | chr6_4:83401703-83401722 | None:intergenic | 5.0% |
| !!! | AAAAAAAATATTTTTTTACT+TGG | + | chr6_4:83400038-83400057 | Msa1000480:intron | 5.0% |
| !! | TTGATTATTATTAATAATAA+TGG | - | chr6_4:83401160-83401179 | None:intergenic | 5.0% |
| !! | AATAAATAAAAAATTATTGA+AGG | - | chr6_4:83401703-83401722 | None:intergenic | 5.0% |
| GATGGATGAGGGTTGTGTAG+AGG | - | chr6_4:83399910-83399929 | None:intergenic | 50.0% | |
| !! | GATCTGGGCTGACTCTCTTT+TGG | + | chr6_4:83400574-83400593 | Msa1000480:intron | 50.0% |
| !! | GGTGGATTGAGAAGTGGCAT+TGG | - | chr6_4:83401323-83401342 | None:intergenic | 50.0% |
| GATGGATGAGGGTTGTGTAG+AGG | - | chr6_4:83399910-83399929 | None:intergenic | 50.0% | |
| !! | GATCTGGGCTGACTCTCTTT+TGG | + | chr6_4:83400574-83400593 | Msa1000480:intron | 50.0% |
| !! | GGTGGATTGAGAAGTGGCAT+TGG | - | chr6_4:83401323-83401342 | None:intergenic | 50.0% |
| GGATGAGGGTTGTGTAGAGG+AGG | - | chr6_4:83399907-83399926 | None:intergenic | 55.0% | |
| !! | GGGCTGACTCTCTTTTGGTC+TGG | + | chr6_4:83400579-83400598 | Msa1000480:intron | 55.0% |
| GGATGAGGGTTGTGTAGAGG+AGG | - | chr6_4:83399907-83399926 | None:intergenic | 55.0% | |
| !! | GGGCTGACTCTCTTTTGGTC+TGG | + | chr6_4:83400579-83400598 | Msa1000480:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 83399511 | 83401849 | 83399511 | ID=Msa1000480;Name=Msa1000480 |
| chr6_4 | mRNA | 83399511 | 83401849 | 83399511 | ID=Msa1000480-mRNA-1;Parent=Msa1000480;Name=Msa1000480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=216|0.75|0.6|1|1|1|5|0|191 |
| chr6_4 | exon | 83399511 | 83399942 | 83399511 | ID=Msa1000480-mRNA-1:exon:16150;Parent=Msa1000480-mRNA-1 |
| chr6_4 | exon | 83400125 | 83400235 | 83400125 | ID=Msa1000480-mRNA-1:exon:16151;Parent=Msa1000480-mRNA-1 |
| chr6_4 | exon | 83401058 | 83401128 | 83401058 | ID=Msa1000480-mRNA-1:exon:16152;Parent=Msa1000480-mRNA-1 |
| chr6_4 | exon | 83401306 | 83401369 | 83401306 | ID=Msa1000480-mRNA-1:exon:16153;Parent=Msa1000480-mRNA-1 |
| chr6_4 | exon | 83401736 | 83401849 | 83401736 | ID=Msa1000480-mRNA-1:exon:16154;Parent=Msa1000480-mRNA-1 |
| chr6_4 | five_prime_UTR | 83399511 | 83399726 | 83399511 | ID=Msa1000480-mRNA-1:five_prime_utr;Parent=Msa1000480-mRNA-1 |
| chr6_4 | CDS | 83399727 | 83399942 | 83399727 | ID=Msa1000480-mRNA-1:cds;Parent=Msa1000480-mRNA-1 |
| chr6_4 | CDS | 83400125 | 83400235 | 83400125 | ID=Msa1000480-mRNA-1:cds;Parent=Msa1000480-mRNA-1 |
| chr6_4 | CDS | 83401058 | 83401128 | 83401058 | ID=Msa1000480-mRNA-1:cds;Parent=Msa1000480-mRNA-1 |
| chr6_4 | CDS | 83401306 | 83401369 | 83401306 | ID=Msa1000480-mRNA-1:cds;Parent=Msa1000480-mRNA-1 |
| chr6_4 | CDS | 83401736 | 83401849 | 83401736 | ID=Msa1000480-mRNA-1:cds;Parent=Msa1000480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
