AlfalfaGEDB | Msa1000480

M. sativa cultivar zhongmu-4 / Msa1000480

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1000480	XP_003620655.1	98.429	191	3	0	1	191	1	191	1.98e-134	384

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1000480	sp\|Q84X40\|SPER1_ARATH	44.509	173	71	6	21	191	29	178	2.04e-28	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1000480	G7KPU1	98.429	191	3	0	1	191	1	191	9.45e-135	384

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0072180	Msa1000480	0.812175	4.839901e-51	-8.615850e-47
Msa0120450	Msa1000480	0.807500	4.903896e-50	-8.615850e-47
Msa0198990	Msa1000480	0.823589	1.276752e-53	-8.615850e-47
Msa0241750	Msa1000480	0.809998	1.434362e-50	-8.615850e-47
Msa0333770	Msa1000480	0.809158	2.173007e-50	-8.615850e-47
Msa0549130	Msa1000480	0.822068	2.886622e-53	-8.615850e-47
Msa0567330	Msa1000480	0.821302	4.340645e-53	-8.615850e-47
Msa0576320	Msa1000480	0.810699	1.012256e-50	-8.615850e-47
Msa0657710	Msa1000480	0.809984	1.444126e-50	-8.615850e-47
Msa0702800	Msa1000480	0.816542	5.240591e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1000480	MtrunA17_Chr6g0486541	98.429	191	3	0	1	191	1	191	1.82e-138	384
Msa1000480	MtrunA17_Chr8g0390151	46.977	215	64	9	1	191	1	189	8.27e-38	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1000480	AT2G20080.1	44.509	173	71	6	21	191	29	178	2.07e-29	107
Msa1000480	AT2G20080.3	41.071	168	72	6	3	159	2	153	1.61e-24	94.7
Msa1000480	AT4G28840.1	40.887	203	93	9	3	189	2	193	3.06e-21	86.7
Msa1000480	AT4G28840.3	47.407	135	60	5	3	127	2	135	1.32e-19	81.3
Msa1000480	AT4G28840.2	47.101	138	56	7	3	127	2	135	3.38e-19	81.3
Msa1000480	AT2G20080.2	35.673	171	62	5	21	191	29	151	8.68e-16	71.2

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Find 48 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAAGCAACCACAAAG+AGG	0.610893	6_4:+83399820	Msa1000480:CDS
AAATCCCTTAAAACCTTGCT+TGG	0.460210	6_4:-83399642	None:intergenic
AAGCAACCACAAAGAGGATT+AGG	0.418208	6_4:+83399826	Msa1000480:CDS
AAGCTATTAGCACAAAACTT+AGG	0.436218	6_4:-83399593	None:intergenic
AAGTAATGGTTTAGTTGTGG+TGG	0.522040	6_4:-83401338	None:intergenic
AATCCTCTTTGTGGTTGCTT+TGG	0.342523	6_4:-83399823	None:intergenic
AATTAGATTACATGGTGAAA+TGG	0.382742	6_4:+83399867	Msa1000480:CDS
ACATCATACTCAGCTTCACA+TGG	0.638359	6_4:+83400194	Msa1000480:CDS
AGAAGGAATTAGAATATGGA+TGG	0.580004	6_4:+83399712	Msa1000480:exon
AGAGATATAAAGGTATATGA+TGG	0.549742	6_4:-83399677	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTATTAGCACAAAACTT+AGG	-	chr6_4:83399596-83399615	None:intergenic	30.0%
TCTCTACCTTGATATATAGA+AGG	+	chr6_4:83399695-83399714	Msa1000480:five_prime_UTR	30.0%
AGAAGGAATTAGAATATGGA+TGG	+	chr6_4:83399712-83399731	Msa1000480:exon	30.0%
GAATATGGTGTTTGTATTGT+TGG	-	chr6_4:83400134-83400153	None:intergenic	30.0%
GAGTAAGAAAAAGATGATGA+TGG	-	chr6_4:83400164-83400183	None:intergenic	30.0%
CTCATCACAAAAGAATGAAA+AGG	-	chr6_4:83400308-83400327	None:intergenic	30.0%
AATAGTTACCTTGATTGCTA+TGG	-	chr6_4:83400434-83400453	None:intergenic	30.0%
ATGTCATGTCATTACAACAA+AGG	-	chr6_4:83400480-83400499	None:intergenic	30.0%
AATTGTGTATTACTAACCCT+AGG	+	chr6_4:83400622-83400641	Msa1000480:intron	30.0%
TTGTTCTATCATATTGAGGT+AGG	-	chr6_4:83401066-83401085	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	83399511	83401849	83399511	ID=Msa1000480;Name=Msa1000480
chr6_4	mRNA	83399511	83401849	83399511	ID=Msa1000480-mRNA-1;Parent=Msa1000480;Name=Msa1000480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=216\|0.75\|0.6\|1\|1\|1\|5\|0\|191
chr6_4	exon	83399511	83399942	83399511	ID=Msa1000480-mRNA-1:exon:16150;Parent=Msa1000480-mRNA-1
chr6_4	exon	83400125	83400235	83400125	ID=Msa1000480-mRNA-1:exon:16151;Parent=Msa1000480-mRNA-1
chr6_4	exon	83401058	83401128	83401058	ID=Msa1000480-mRNA-1:exon:16152;Parent=Msa1000480-mRNA-1
chr6_4	exon	83401306	83401369	83401306	ID=Msa1000480-mRNA-1:exon:16153;Parent=Msa1000480-mRNA-1
chr6_4	exon	83401736	83401849	83401736	ID=Msa1000480-mRNA-1:exon:16154;Parent=Msa1000480-mRNA-1
chr6_4	five_prime_UTR	83399511	83399726	83399511	ID=Msa1000480-mRNA-1:five_prime_utr;Parent=Msa1000480-mRNA-1
chr6_4	CDS	83399727	83399942	83399727	ID=Msa1000480-mRNA-1:cds;Parent=Msa1000480-mRNA-1
chr6_4	CDS	83400125	83400235	83400125	ID=Msa1000480-mRNA-1:cds;Parent=Msa1000480-mRNA-1
chr6_4	CDS	83401058	83401128	83401058	ID=Msa1000480-mRNA-1:cds;Parent=Msa1000480-mRNA-1
chr6_4	CDS	83401306	83401369	83401306	ID=Msa1000480-mRNA-1:cds;Parent=Msa1000480-mRNA-1
chr6_4	CDS	83401736	83401849	83401736	ID=Msa1000480-mRNA-1:cds;Parent=Msa1000480-mRNA-1

Gene Sequence

>Msa1000480

ATGGATGGTAGTAATTATTTTGGAGATTCGAACATGGGGAATGAAAGAGTAAGTGGATCTTCATCAAGAAAAGGGAAGAAAAACAATCAAGATAAACCAAAGCAACCACAAAGAGGATTAGGTGTTGCTCAATTGGAAAAAATTAGATTACATGGTGAAATGGCTTATGGTTTTCATCCTCCTCTACACAACCCTCATCCATCTAATTTTATCAATGAAGATCCAACAATACAAACACCATATTCATCAATACCATCATCATCTTTTTCTTACTCATCTTCATCTACATCATACTCAGCTTCACATGGCTTTCAACCAAACATTATGATGGGCCTACCTCAATATGATAGAACAAACATTAGATTTGGAGATTCTCAGCCAGTATTTGATTCATCAAGATTATGGGAGCATGCCAATGCCACTTCTCAATCCACCACAACTAAACCATTACTTAACCTATATGACTCACAGTACATAGATACCAAGAAGCATAGAAGTGGTTCCACAAGCAGTCAGAACTCAGAATCAAGTGATCACAATCAAGAACCAGATTTGGAGCTAAGATTATCTCTTTGA

Protein sequence

>Msa1000480

MDGSNYFGDSNMGNERVSGSSSRKGKKNNQDKPKQPQRGLGVAQLEKIRLHGEMAYGFHPPLHNPHPSNFINEDPTIQTPYSSIPSSSFSYSSSSTSYSASHGFQPNIMMGLPQYDRTNIRFGDSQPVFDSSRLWEHANATSQSTTTKPLLNLYDSQYIDTKKHRSGSTSSQNSESSDHNQEPDLELRLSL*