AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0120450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120450 MtrunA17_Chr1g0178931 94.269 349 19 1 1 349 1 348 0.0 657
Msa0120450 MtrunA17_Chr1g0178941 76.119 335 71 4 23 349 26 359 0.0 523
Msa0120450 MtrunA17_Chr7g0266061 61.420 324 118 4 23 340 23 345 3.76e-151 429
Msa0120450 MtrunA17_Chr1g0178961 78.082 219 47 1 132 349 1 219 9.73e-125 357
Msa0120450 MtrunA17_Chr1g0198381 51.780 309 137 5 38 340 2 304 4.63e-111 326
Msa0120450 MtrunA17_Chr1g0198351 43.844 333 174 5 15 340 18 344 5.31e-102 304
Msa0120450 MtrunA17_Chr1g0198391 43.114 334 147 7 38 340 33 354 1.04e-87 268
Msa0120450 MtrunA17_Chr1g0198401 40.299 268 151 3 87 349 8 271 4.42e-72 225
Msa0120450 MtrunA17_Chr1g0178951 75.926 108 23 2 23 128 3 109 3.51e-51 166
Msa0120450 MtrunA17_Chr8g0344941 28.857 350 222 13 9 339 14 355 1.41e-36 135
Msa0120450 MtrunA17_Chr8g0349321 31.193 327 198 12 39 348 38 354 5.61e-36 134
Msa0120450 MtrunA17_Chr2g0301641 30.769 312 188 12 39 329 44 348 1.24e-35 133
Msa0120450 MtrunA17_Chr3g0077581 29.310 348 211 11 7 329 5 342 4.48e-33 126
Msa0120450 MtrunA17_Chr7g0275291 29.132 357 205 14 7 331 11 351 5.47e-32 123
Msa0120450 MtrunA17_Chr3g0131321 30.031 323 179 14 39 330 35 341 2.53e-31 121
Msa0120450 MtrunA17_Chr8g0349341 30.128 312 188 12 39 331 38 338 3.64e-31 120
Msa0120450 MtrunA17_Chr4g0017431 28.528 326 192 12 39 335 32 345 1.27e-30 119
Msa0120450 MtrunA17_Chr8g0349301 31.849 292 170 12 39 312 38 318 2.01e-29 115
Msa0120450 MtrunA17_Chr1g0189891 29.167 360 199 19 10 339 4 337 2.08e-28 113
Msa0120450 MtrunA17_Chr1g0156921 26.954 371 238 14 1 348 4 364 2.79e-28 113
Msa0120450 MtrunA17_Chr8g0344931 29.290 338 203 15 12 329 11 332 3.39e-28 112
Msa0120450 MtrunA17_Chr1g0189901 27.410 332 201 13 34 339 27 344 6.33e-28 112
Msa0120450 MtrunA17_Chr3g0099151 27.300 337 204 12 31 339 80 403 6.86e-28 112
Msa0120450 MtrunA17_Chr2g0285001 28.076 317 189 14 39 333 34 333 1.22e-27 111
Msa0120450 MtrunA17_Chr5g0438631 28.107 338 204 14 17 329 9 332 3.23e-27 110
Msa0120450 MtrunA17_Chr1g0156911 27.473 364 228 14 9 349 5 355 3.25e-27 110
Msa0120450 MtrunA17_Chr1g0198361 41.860 129 71 3 149 274 3 130 2.29e-26 103
Msa0120450 MtrunA17_Chr2g0294301 28.981 314 192 12 40 331 37 341 6.23e-26 106
Msa0120450 MtrunA17_Chr2g0285061 27.778 342 202 13 15 331 16 337 8.92e-26 106
Msa0120450 MtrunA17_Chr3g0120861 28.529 333 206 11 39 349 39 361 9.14e-26 106
Msa0120450 MtrunA17_Chr3g0086641 27.221 349 203 15 12 331 16 342 1.29e-25 105
Msa0120450 MtrunA17_Chr3g0099231 25.373 335 211 13 31 339 21 342 2.21e-25 105
Msa0120450 MtrunA17_Chr7g0275011 26.364 330 201 14 37 339 33 347 2.83e-25 104
Msa0120450 MtrunA17_Chr4g0057991 26.197 355 224 11 7 335 13 355 3.57e-25 104
Msa0120450 MtrunA17_Chr3g0099161 26.488 336 207 13 31 339 85 407 4.04e-25 105
Msa0120450 MtrunA17_Chr5g0438621 26.036 338 221 13 12 329 5 333 4.10e-25 103
Msa0120450 MtrunA17_Chr1g0189931 26.111 360 219 15 7 339 6 345 7.19e-25 103
Msa0120450 MtrunA17_Chr1g0182811 26.061 330 206 12 36 339 31 348 9.20e-25 103
Msa0120450 MtrunA17_Chr2g0283511 26.271 354 229 11 17 341 10 360 1.31e-24 103
Msa0120450 MtrunA17_Chr8g0347751 25.826 333 196 10 39 331 37 358 1.33e-24 103
Msa0120450 MtrunA17_Chr7g0275001 24.702 336 224 12 33 347 20 347 1.52e-24 102
Msa0120450 MtrunA17_Chr5g0432101 28.182 330 197 15 39 340 34 351 1.73e-24 102
Msa0120450 MtrunA17_Chr2g0283481 26.154 325 208 12 39 335 48 368 1.89e-24 102
Msa0120450 MtrunA17_Chr5g0420811 26.393 341 221 12 13 337 6 332 1.90e-24 102
Msa0120450 MtrunA17_Chr8g0374101 26.562 320 196 14 40 330 39 348 3.14e-24 102
Msa0120450 MtrunA17_Chr1g0156891 27.385 325 206 12 39 342 44 359 3.66e-24 101
Msa0120450 MtrunA17_Chr2g0283501 26.168 321 206 8 39 331 32 349 4.51e-24 101
Msa0120450 MtrunA17_Chr8g0371491 26.997 363 229 14 5 342 2 353 5.38e-24 101
Msa0120450 MtrunA17_Chr2g0283191 27.371 369 215 18 1 336 9 357 6.18e-24 101
Msa0120450 MtrunA17_Chr7g0275021 26.744 344 217 14 8 329 7 337 9.17e-24 100
Msa0120450 MtrunA17_Chr5g0396511 27.414 321 181 15 40 328 48 348 1.23e-23 100
Msa0120450 MtrunA17_Chr4g0027521 27.500 320 209 10 39 339 28 343 1.62e-23 99.8
Msa0120450 MtrunA17_Chr7g0226911 26.593 361 219 13 10 331 7 360 1.66e-23 100
Msa0120450 MtrunA17_Chr1g0156901 25.620 363 234 15 9 346 18 369 1.92e-23 99.8
Msa0120450 MtrunA17_Chr3g0077571 27.707 314 190 12 39 330 31 329 2.31e-23 99.4
Msa0120450 MtrunA17_Chr5g0438641 27.154 383 211 19 1 348 1 350 2.59e-23 99.4
Msa0120450 MtrunA17_Chr4g0060811 25.305 328 207 12 40 342 29 343 2.70e-23 99.4
Msa0120450 MtrunA17_Chr5g0434621 27.414 321 198 13 40 338 27 334 3.33e-23 99.0
Msa0120450 MtrunA17_Chr8g0349331 27.673 318 189 11 39 347 36 321 6.35e-23 97.8
Msa0120450 MtrunA17_Chr8g0380041 26.496 351 206 15 9 331 9 335 6.60e-23 98.2
Msa0120450 MtrunA17_Chr7g0226931 27.034 381 221 14 1 331 1 374 9.29e-23 98.2
Msa0120450 MtrunA17_Chr3g0092131 25.697 323 212 10 40 342 25 339 1.24e-22 97.4
Msa0120450 MtrunA17_Chr4g0068441 29.129 333 199 15 40 347 37 357 1.98e-22 97.1
Msa0120450 MtrunA17_Chr3g0085231 26.648 349 205 16 7 330 1 323 2.24e-22 96.7
Msa0120450 MtrunA17_Chr6g0457921 24.501 351 230 14 11 339 6 343 2.80e-22 96.3
Msa0120450 MtrunA17_Chr7g0274991 26.197 355 215 15 1 328 1 335 3.49e-22 96.3
Msa0120450 MtrunA17_Chr7g0254461 24.074 378 225 14 9 339 13 375 4.67e-22 96.3
Msa0120450 MtrunA17_Chr3g0142921 27.273 330 208 16 39 346 37 356 6.00e-22 95.5
Msa0120450 MtrunA17_Chr2g0320671 26.888 331 210 12 39 347 31 351 8.45e-22 94.7
Msa0120450 MtrunA17_Chr4g0046151 24.370 357 231 15 7 336 9 353 1.26e-21 94.7
Msa0120450 MtrunA17_Chr5g0405821 26.912 353 216 16 9 333 14 352 1.53e-21 94.4
Msa0120450 MtrunA17_Chr5g0437421 24.340 341 221 11 33 348 27 355 2.17e-21 94.0
Msa0120450 MtrunA17_Chr8g0380031 27.653 311 188 13 39 330 85 377 2.78e-21 94.0
Msa0120450 MtrunA17_Chr2g0283531 25.490 357 233 10 13 339 3 356 4.85e-21 92.8
Msa0120450 MtrunA17_Chr5g0405831 25.625 320 209 13 39 337 44 355 5.59e-21 92.8
Msa0120450 MtrunA17_Chr8g0381581 25.223 337 210 10 39 339 41 371 6.41e-21 92.8
Msa0120450 MtrunA17_Chr4g0008851 25.291 344 215 15 9 329 13 337 8.66e-21 92.0
Msa0120450 MtrunA17_Chr3g0105401 26.284 331 215 12 39 348 29 351 9.59e-21 92.0
Msa0120450 MtrunA17_Chr7g0215961 25.634 355 209 14 9 339 10 333 1.66e-20 91.3
Msa0120450 MtrunA17_Chr3g0112821 25.904 332 201 14 35 335 27 344 2.05e-20 91.3
Msa0120450 MtrunA17_Chr2g0284991 29.102 323 181 16 39 335 34 334 2.45e-20 90.9
Msa0120450 MtrunA17_Chr6g0450711 24.725 364 229 12 1 329 82 435 2.45e-20 91.7
Msa0120450 MtrunA17_Chr1g0157001 26.266 316 205 12 43 339 41 347 5.79e-20 90.1
Msa0120450 MtrunA17_Chr3g0085881 28.710 310 184 15 39 330 34 324 6.20e-20 89.7
Msa0120450 MtrunA17_Chr2g0284921 28.571 315 184 15 39 330 35 331 9.70e-20 89.0
Msa0120450 MtrunA17_Chr1g0160031 24.860 358 225 14 15 339 19 365 9.74e-20 89.4
Msa0120450 MtrunA17_Chr1g0159971 24.702 336 214 11 37 339 46 375 4.97e-19 87.4
Msa0120450 MtrunA17_Chr3g0096551 25.434 346 202 13 35 335 26 360 6.80e-19 87.0
Msa0120450 MtrunA17_Chr8g0371481 25.513 341 219 14 32 348 35 364 7.73e-19 86.7
Msa0120450 MtrunA17_Chr7g0271551 25.316 316 217 6 39 339 37 348 8.26e-19 86.7
Msa0120450 MtrunA17_Chr1g0198411 73.585 53 12 1 38 90 32 82 8.52e-19 80.5
Msa0120450 MtrunA17_Chr3g0093031 25.893 336 201 15 35 335 27 349 1.01e-18 86.3
Msa0120450 MtrunA17_Chr2g0301541 24.929 353 210 12 13 335 12 339 1.10e-18 85.9
Msa0120450 MtrunA17_Chr2g0284951 27.500 320 190 15 39 337 34 332 6.49e-18 84.0
Msa0120450 MtrunA17_Chr2g0301581 24.646 353 211 11 13 335 12 339 7.25e-18 83.6
Msa0120450 MtrunA17_Chr1g0160011 23.873 377 237 14 1 340 4 367 1.77e-17 82.8
Msa0120450 MtrunA17_Chr2g0330781 25.298 336 210 12 39 347 32 353 1.84e-17 82.4
Msa0120450 MtrunA17_Chr1g0160101 25.148 338 207 13 39 339 43 371 2.05e-17 82.8
Msa0120450 MtrunA17_Chr8g0352901 24.615 325 208 11 39 331 29 348 2.33e-17 82.4
Msa0120450 MtrunA17_Chr2g0284941 26.006 323 174 15 39 337 34 315 2.54e-17 82.0
Msa0120450 MtrunA17_Chr6g0450701 23.932 351 224 11 12 331 16 354 3.32e-17 82.0
Msa0120450 MtrunA17_Chr8g0371471 24.706 340 222 14 32 348 35 363 6.60e-17 80.9
Msa0120450 MtrunA17_Chr3g0142941 26.087 322 213 12 39 342 48 362 8.25e-17 80.9
Msa0120450 MtrunA17_Chr6g0450731 23.889 360 218 14 1 329 1 335 8.61e-17 80.5
Msa0120450 MtrunA17_Chr5g0444401 24.214 318 205 12 39 331 29 335 1.21e-16 80.1
Msa0120450 MtrunA17_Chr2g0317261 25.680 331 200 14 37 339 29 341 1.51e-16 79.7
Msa0120450 MtrunA17_Chr2g0317271 25.680 331 200 14 37 339 29 341 1.56e-16 79.7
Msa0120450 MtrunA17_Chr1g0159981 22.563 359 236 12 15 340 26 375 1.77e-16 80.1
Msa0120450 MtrunA17_Chr7g0226941 25.153 326 206 11 39 331 34 354 2.24e-16 79.3
Msa0120450 MtrunA17_Chr0c01g0489581 25.378 331 201 14 37 339 29 341 3.47e-16 79.0
Msa0120450 MtrunA17_Chr0c01g0489571 25.378 331 201 14 37 339 29 341 4.15e-16 78.6
Msa0120450 MtrunA17_Chr3g0104821 24.484 339 205 16 35 335 41 366 8.25e-16 77.8
Msa0120450 MtrunA17_Chr1g0159991 22.865 363 230 13 15 340 16 365 8.49e-16 77.8
Msa0120450 MtrunA17_Chr8g0370981 21.066 394 244 13 15 348 23 409 3.62e-14 73.2
Msa0120450 MtrunA17_Chr2g0301591 25.882 255 166 6 13 253 12 257 4.24e-13 68.9
Msa0120450 MtrunA17_Chr7g0273101 24.157 356 217 13 23 339 17 358 1.05e-12 68.6
Msa0120450 MtrunA17_Chr1g0191461 24.451 364 219 10 16 339 12 359 3.26e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0120450 AT5G03610.1 55.556 342 143 5 7 341 11 350 4.51e-130 376
Msa0120450 AT3G09930.2 48.780 328 159 5 22 341 21 347 7.10e-109 322
Msa0120450 AT3G09930.1 48.780 328 159 5 22 341 21 347 7.10e-109 322
Msa0120450 AT2G36325.1 39.368 348 188 10 8 339 10 350 5.98e-77 241
Msa0120450 AT5G03600.2 38.554 332 189 7 13 339 25 346 3.16e-75 236
Msa0120450 AT5G03600.1 39.490 314 176 6 31 339 7 311 1.01e-74 234
Msa0120450 AT5G03590.3 36.897 290 133 9 59 341 7 253 1.53e-56 185
Msa0120450 AT5G03590.1 32.526 289 116 8 59 341 7 222 3.73e-45 154
Msa0120450 AT1G53920.1 30.435 345 214 11 8 333 18 355 6.73e-40 145
Msa0120450 AT5G41890.1 30.114 352 201 14 10 331 12 348 1.73e-33 127
Msa0120450 AT1G28640.1 29.598 348 208 10 14 330 11 352 2.80e-33 127
Msa0120450 AT5G03590.2 39.791 191 107 7 9 195 7 193 3.15e-32 120
Msa0120450 AT5G08460.1 29.330 358 213 16 4 330 9 357 1.28e-30 120
Msa0120450 AT1G33811.1 28.205 351 200 14 13 329 10 342 1.20e-29 117
Msa0120450 AT1G20130.1 27.108 332 211 9 39 345 205 530 3.03e-29 118
Msa0120450 AT1G20130.2 27.108 332 211 9 39 345 185 510 3.11e-29 118
Msa0120450 AT2G30310.1 25.634 355 231 11 3 335 2 345 1.85e-28 114
Msa0120450 AT1G28650.1 26.836 354 222 9 13 335 12 359 3.94e-28 113
Msa0120450 AT1G28670.1 27.557 352 221 8 14 335 11 358 4.79e-28 113
Msa0120450 AT1G06990.1 27.711 332 203 11 39 345 38 357 4.80e-28 112
Msa0120450 AT2G27360.1 27.859 341 188 12 37 335 32 356 6.91e-28 112
Msa0120450 AT1G59406.1 27.869 366 219 16 6 347 4 348 1.04e-27 111
Msa0120450 AT1G59030.1 27.869 366 219 16 6 347 4 348 1.04e-27 111
Msa0120450 AT1G58725.1 27.869 366 219 16 6 347 4 348 1.04e-27 111
Msa0120450 AT1G58430.1 26.844 339 217 11 27 342 23 353 1.29e-27 111
Msa0120450 AT1G71691.2 28.707 317 182 14 39 329 56 354 2.91e-27 110
Msa0120450 AT2G31540.1 27.108 332 206 12 36 340 29 351 4.48e-27 110
Msa0120450 AT5G33370.1 26.524 328 205 13 36 339 28 343 5.41e-27 110
Msa0120450 AT1G20120.1 29.245 318 189 15 39 332 79 384 5.51e-27 110
Msa0120450 AT1G54010.1 27.273 330 214 12 12 329 13 328 1.23e-26 109
Msa0120450 AT2G40250.1 26.284 331 204 10 35 337 33 351 1.33e-26 108
Msa0120450 AT1G71250.1 27.974 311 196 13 39 329 42 344 1.39e-26 108
Msa0120450 AT2G04570.1 27.628 333 207 12 39 348 29 350 1.69e-26 108
Msa0120450 AT5G18430.1 27.937 315 197 12 37 329 27 333 2.10e-26 108
Msa0120450 AT4G01130.1 27.451 357 213 12 10 331 11 356 2.23e-26 108
Msa0120450 AT1G54030.1 26.645 304 194 9 36 329 50 334 2.86e-26 108
Msa0120450 AT2G19060.1 28.387 310 196 11 40 335 32 329 3.43e-26 107
Msa0120450 AT2G30220.1 26.471 340 218 11 15 332 12 341 5.55e-26 107
Msa0120450 AT1G54020.2 28.529 333 205 14 15 334 13 325 8.72e-26 106
Msa0120450 AT1G54000.1 26.705 352 219 14 12 349 13 339 9.18e-26 107
Msa0120450 AT5G40990.1 28.435 313 196 10 39 329 38 344 2.54e-25 105
Msa0120450 AT5G42170.1 25.472 318 212 10 39 339 51 360 6.00e-25 104
Msa0120450 AT1G75890.2 27.195 353 222 14 10 338 19 360 7.63e-25 103
Msa0120450 AT4G28780.1 27.434 339 212 13 32 347 25 352 7.72e-25 103
Msa0120450 AT1G75890.3 26.629 353 224 13 10 338 48 389 9.52e-25 104
Msa0120450 AT3G14820.1 27.469 324 203 12 39 342 33 344 9.55e-25 103
Msa0120450 AT1G58520.3 27.273 330 200 12 39 347 31 341 1.15e-24 103
Msa0120450 AT1G58525.1 27.273 330 200 12 39 347 31 341 1.15e-24 103
Msa0120450 AT1G29660.1 27.473 364 211 19 1 335 1 340 1.23e-24 103
Msa0120450 AT3G53100.1 26.347 334 208 13 39 347 30 350 3.88e-24 101
Msa0120450 AT1G75880.2 27.824 363 229 14 7 346 20 372 4.07e-24 102
Msa0120450 AT1G28570.1 24.928 349 229 10 13 332 9 353 4.65e-24 102
Msa0120450 AT3G50400.1 25.625 320 202 12 40 331 36 347 5.36e-24 101
Msa0120450 AT1G75880.1 27.747 364 229 14 7 346 20 373 5.81e-24 101
Msa0120450 AT3G14225.2 27.974 311 200 10 39 329 38 344 6.14e-24 101
Msa0120450 AT1G20132.1 26.647 334 213 10 36 347 59 382 8.91e-24 101
Msa0120450 AT1G28590.1 26.225 347 208 12 37 347 35 369 1.18e-23 101
Msa0120450 AT5G33370.2 30.000 240 146 9 36 255 28 265 1.20e-23 100
Msa0120450 AT3G14220.1 28.618 304 192 14 39 329 33 324 1.42e-23 100
Msa0120450 AT2G24560.1 24.528 318 208 11 39 333 35 343 1.43e-23 100
Msa0120450 AT3G04290.1 25.610 328 208 13 36 339 27 342 1.48e-23 100
Msa0120450 AT1G28610.2 26.486 370 213 15 14 341 6 358 2.62e-23 100
Msa0120450 AT2G23540.1 27.187 320 194 14 40 330 50 359 2.90e-23 99.8
Msa0120450 AT5G45910.1 26.879 346 216 10 29 339 18 361 2.91e-23 99.8
Msa0120450 AT5G45960.1 26.857 350 212 15 21 340 30 365 3.01e-23 99.8
Msa0120450 AT1G75890.1 26.158 367 221 14 10 338 19 373 6.31e-23 99.0
Msa0120450 AT1G75900.1 26.039 361 228 14 12 348 19 364 6.87e-23 98.6
Msa0120450 AT3G14225.1 26.984 315 202 9 39 329 38 348 8.20e-23 98.6
Msa0120450 AT3G14210.1 26.506 332 204 14 35 349 33 341 1.06e-22 98.2
Msa0120450 AT1G75930.1 24.501 351 219 13 6 335 5 330 1.58e-22 97.1
Msa0120450 AT3G48460.1 25.479 365 233 12 1 335 1 356 1.58e-22 97.8
Msa0120450 AT1G28580.1 25.070 355 218 10 15 332 13 356 1.62e-22 97.8
Msa0120450 AT2G19050.1 27.358 318 204 12 40 344 33 336 2.02e-22 97.1
Msa0120450 AT1G28600.1 25.556 360 217 12 14 335 6 352 2.09e-22 97.4
Msa0120450 AT1G29670.1 27.536 345 205 15 12 330 9 334 2.87e-22 96.7
Msa0120450 AT1G71120.1 23.529 323 226 9 39 347 32 347 3.45e-22 96.7
Msa0120450 AT2G03980.2 25.378 331 216 14 39 348 44 364 6.14e-22 95.9
Msa0120450 AT2G03980.3 25.378 331 216 14 39 348 44 364 6.14e-22 95.9
Msa0120450 AT2G03980.1 25.378 331 216 14 39 348 44 364 6.14e-22 95.9
Msa0120450 AT2G03980.4 25.378 331 216 14 39 348 44 364 6.14e-22 95.9
Msa0120450 AT1G29670.2 27.451 357 211 16 1 331 69 403 9.50e-22 95.9
Msa0120450 AT5G37690.1 24.839 310 207 11 40 331 29 330 9.75e-22 95.1
Msa0120450 AT4G26790.1 26.235 324 185 13 39 329 30 332 1.19e-21 94.7
Msa0120450 AT4G26790.2 26.235 324 185 13 39 329 30 332 1.19e-21 94.7
Msa0120450 AT1G20135.1 24.852 338 214 10 15 335 12 326 1.60e-21 94.0
Msa0120450 AT4G10950.2 26.627 338 197 14 39 345 72 389 1.65e-21 95.1
Msa0120450 AT3G43570.1 26.685 356 196 15 13 347 8 319 1.88e-21 94.0
Msa0120450 AT5G15720.1 25.949 316 198 12 39 329 31 335 2.09e-21 94.4
Msa0120450 AT5G45950.1 26.346 353 223 12 11 347 20 351 3.28e-21 93.6
Msa0120450 AT1G71691.3 29.057 265 155 11 39 280 56 310 3.70e-21 92.8
Msa0120450 AT5G22810.1 26.257 358 234 11 13 347 8 358 5.25e-21 93.2
Msa0120450 AT1G28660.1 25.779 353 225 9 14 335 11 357 8.67e-21 92.8
Msa0120450 AT1G31550.2 26.254 339 206 11 37 341 35 363 1.96e-20 92.0
Msa0120450 AT4G10950.1 26.239 343 188 15 39 345 72 385 2.00e-20 92.0
Msa0120450 AT1G53940.2 26.837 313 201 10 39 329 40 346 2.33e-20 91.7
Msa0120450 AT1G67830.1 24.332 337 213 9 39 339 31 361 3.46e-20 90.9
Msa0120450 AT2G19010.1 27.036 307 194 12 39 330 31 322 3.92e-20 90.5
Msa0120450 AT3G43550.1 29.861 288 170 13 15 280 8 285 4.13e-20 89.4
Msa0120450 AT2G42990.1 24.706 340 215 15 14 329 9 331 5.21e-20 90.1
Msa0120450 AT2G19010.2 27.036 307 194 12 39 330 61 352 6.40e-20 90.1
Msa0120450 AT5G45670.1 26.899 316 193 13 40 330 31 333 7.58e-20 89.7
Msa0120450 AT1G54030.2 27.200 250 157 8 37 276 51 285 9.62e-20 89.0
Msa0120450 AT5G55050.1 24.324 333 219 12 39 346 40 364 1.05e-19 89.7
Msa0120450 AT5G14450.1 27.744 328 195 15 39 331 42 362 1.39e-19 89.4
Msa0120450 AT1G74460.1 24.848 330 206 12 40 342 25 339 1.52e-19 89.0
Msa0120450 AT1G73610.1 24.507 355 223 9 4 339 7 335 2.05e-19 88.2
Msa0120450 AT1G28660.2 25.496 353 225 9 14 335 11 356 2.16e-19 88.6
Msa0120450 AT1G23500.1 25.000 360 214 12 10 339 3 336 2.96e-19 87.8
Msa0120450 AT1G56670.1 23.121 346 241 6 7 335 13 350 3.87e-19 87.8
Msa0120450 AT2G19050.2 29.461 241 153 9 40 267 33 269 7.11e-19 85.9
Msa0120450 AT3G16370.1 25.076 331 211 12 39 344 31 349 9.10e-19 86.7
Msa0120450 AT1G75920.2 26.761 355 215 14 9 339 1 334 1.60e-18 85.9
Msa0120450 AT1G31550.1 26.549 339 202 13 37 341 35 360 2.05e-18 85.9
Msa0120450 AT2G24560.2 26.224 286 178 11 39 298 35 313 4.15e-18 84.3
Msa0120450 AT5G03820.2 25.373 335 212 13 39 347 62 384 6.55e-18 84.3
Msa0120450 AT5G03820.1 25.373 335 212 13 39 347 34 356 6.80e-18 84.0
Msa0120450 AT3G27950.1 26.393 341 218 13 16 329 10 344 8.24e-18 84.0
Msa0120450 AT5G15720.2 27.170 265 166 10 39 280 31 291 2.56e-17 82.0
Msa0120450 AT4G18970.1 25.949 316 196 13 40 330 30 332 3.28e-17 82.0
Msa0120450 AT3G26430.1 25.731 342 202 12 39 339 32 362 3.40e-17 82.4
Msa0120450 AT4G01130.2 26.846 298 180 10 10 280 11 297 3.90e-17 81.6
Msa0120450 AT4G18970.2 25.949 316 196 13 40 330 30 332 5.39e-17 82.0
Msa0120450 AT5G03810.1 23.823 361 232 14 12 347 10 352 7.73e-17 80.9
Msa0120450 AT5G37690.2 23.871 310 202 12 40 331 29 322 1.37e-16 80.1
Msa0120450 AT1G53940.1 27.444 266 166 9 39 283 40 299 1.61e-15 76.6
Msa0120450 AT1G54790.3 25.000 372 224 11 9 339 4 361 1.99e-15 77.0
Msa0120450 AT4G30140.1 25.902 305 194 12 40 329 35 322 2.85e-15 76.3
Msa0120450 AT1G09390.1 23.315 356 230 10 8 337 11 349 5.51e-15 75.9
Msa0120450 AT1G75920.1 25.824 364 210 15 15 339 2 344 6.61e-15 75.5
Msa0120450 AT1G71691.1 25.311 241 143 10 112 329 27 253 2.56e-14 72.8
Msa0120450 AT5G63170.1 23.151 311 205 9 39 332 29 322 2.61e-14 73.6
Msa0120450 AT4G16230.1 28.696 230 141 9 7 218 3 227 3.34e-14 72.0
Msa0120450 AT1G75920.4 24.917 301 191 11 57 339 23 306 7.18e-14 72.0
Msa0120450 AT1G54020.1 25.806 248 164 9 96 334 3 239 3.33e-13 69.7
Msa0120450 AT1G54020.5 25.806 248 164 9 96 334 3 239 3.33e-13 69.7
Msa0120450 AT1G54020.3 25.806 248 164 9 96 334 3 239 3.33e-13 69.7
Msa0120450 AT3G62280.1 24.611 321 198 14 39 331 37 341 1.03e-12 68.9
Msa0120450 AT2G04020.2 25.237 317 168 17 39 337 44 309 4.63e-12 66.6
Msa0120450 AT1G56670.2 22.344 273 189 4 8 263 14 280 4.72e-12 66.2
Msa0120450 AT4G01130.3 26.042 192 125 5 155 331 81 270 9.86e-12 65.5
Msa0120450 AT2G04020.1 26.887 212 133 10 39 233 44 250 2.44e-11 63.9
Msa0120450 AT3G14210.2 26.291 213 130 9 148 349 17 213 3.00e-11 63.5

Find 90 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAACATTATTTGAAATA+TGG 0.127919 1_3:+45354910 Msa0120450:CDS
TCAAACGATCCTTGATATTA+TGG 0.176436 1_3:-45355577 None:intergenic
TCGATTTGAGTTGTCATATT+TGG 0.176525 1_3:-45354985 None:intergenic
TGGTGTGATCCTTGGCTTCT+TGG 0.198536 1_3:-45355496 None:intergenic
ATCCGGAATCAAGTTTCTTT+TGG 0.200030 1_3:+45355684 Msa0120450:CDS
ATACAAAGAAGCCGAGTTTA+AGG 0.212624 1_3:-45355880 None:intergenic
CTTGGCTTCTTGGTTCAATT+TGG 0.230503 1_3:-45355486 None:intergenic
AACAAAATGATGCAAATAAA+TGG 0.273261 1_3:-45355811 None:intergenic
CACCAATCCCTCACAAATTC+AGG 0.309817 1_3:+45354878 Msa0120450:CDS
TTCTCTTAAATCCTATGCTT+TGG 0.312836 1_3:-45355334 None:intergenic
ATGTTGAGAGAAGGAAAATA+AGG 0.314493 1_3:-45351819 None:intergenic
ATGCATATGTTTATTACCTT+TGG 0.320686 1_3:+45355989 Msa0120450:three_prime_UTR
CCATATTTCAAATAATGTTT+AGG 0.330993 1_3:-45354910 None:intergenic
ATTGGTTCAATAGGTTGTTA+TGG 0.348306 1_3:-45355457 None:intergenic
CTAAACATTATTTGAAATAT+GGG 0.349813 1_3:+45354911 Msa0120450:CDS
AGAAGCTCTAGTATAAAATA+TGG 0.361610 1_3:-45355775 None:intergenic
CATCTTCTCATGTCTTTCGC+TGG 0.362737 1_3:+45351991 Msa0120450:CDS
CCTTATGGCATAACCTTTCC+CGG 0.367441 1_3:+45352607 Msa0120450:CDS
ATTGCTTATGTCTCTGTTGC+TGG 0.376749 1_3:+45355066 Msa0120450:CDS
GAATAATGTTAAGAAATATT+CGG 0.382849 1_3:+45355652 Msa0120450:CDS
CTGGTTCTTGTACTTCTCTC+AGG 0.405056 1_3:+45352010 Msa0120450:CDS
TGGTCACGGATTGGTTCAAT+AGG 0.406353 1_3:-45355466 None:intergenic
TCCCAAAAGAAACTTGATTC+CGG 0.406703 1_3:-45355686 None:intergenic
GTATTTGATACATTTACTTC+AGG 0.408426 1_3:+45354961 Msa0120450:CDS
CCGGGAAAGGTTATGCCATA+AGG 0.417887 1_3:-45352607 None:intergenic
CATTCCATCCAGCTTGTGTT+GGG 0.422271 1_3:-45355718 None:intergenic
TCCTTGATATTATGGCTTGA+AGG 0.432887 1_3:-45355569 None:intergenic
CGTTAAGTTATCCTTAAACT+CGG 0.440060 1_3:+45355869 Msa0120450:three_prime_UTR
TCTACCGTCGGAGAATCTTC+CGG 0.453026 1_3:-45352638 None:intergenic
GGTTCATGGAAAGAACCTTA+TGG 0.453293 1_3:+45352592 Msa0120450:CDS
TTCTTGAATGAGTTGGTTGA+AGG 0.465456 1_3:-45355010 None:intergenic
AATCATTACTTGGCCACAAA+TGG 0.467719 1_3:+45355099 Msa0120450:CDS
GGATTTAAGAGAATTGTTGT+AGG 0.471266 1_3:+45355344 Msa0120450:CDS
GCATTCCATCCAGCTTGTGT+TGG 0.477061 1_3:-45355719 None:intergenic
AGAGAAACGTGGCCAAGACT+TGG 0.477614 1_3:-45351734 None:intergenic
GGTTCAATTTGGTCACGGAT+TGG 0.479693 1_3:-45355475 None:intergenic
GGAGACTCTTATGTTGATAC+CGG 0.484084 1_3:+45352547 Msa0120450:CDS
ATATTCGGTTTGTGAAAATC+CGG 0.487453 1_3:+45355667 Msa0120450:CDS
TTCTTGGTTCAATTTGGTCA+CGG 0.488512 1_3:-45355480 None:intergenic
AATTCTCACATTCCAAGTCT+TGG 0.491733 1_3:+45351722 None:intergenic
GTAAGTAGTCAGTATAATTG+TGG 0.491932 1_3:+45355617 Msa0120450:CDS
AACTTTGCATATGGTGGTAC+AGG 0.496157 1_3:+45354937 Msa0120450:CDS
AAATGACTACAATCATTACT+TGG 0.497754 1_3:+45355089 Msa0120450:CDS
TGATCTCAATCTCAAATACT+TGG 0.498148 1_3:-45354857 None:intergenic
TATAGTGAGTTGGAGAAGAA+AGG 0.505843 1_3:+45355746 Msa0120450:CDS
TGTAAAGGTGGTGTGATCCT+TGG 0.506168 1_3:-45355504 None:intergenic
TTCCTGAATTTGTGAGGGAT+TGG 0.510692 1_3:-45354880 None:intergenic
CCTTGATATTATGGCTTGAA+GGG 0.516932 1_3:-45355568 None:intergenic
ACAACTGAAGCAATGAAAGA+TGG 0.522350 1_3:-45355281 None:intergenic
ACCTTTCCCGGAAAACCTGC+CGG 0.522743 1_3:+45352619 Msa0120450:CDS
GGGTTGCACCCAACACAAGC+TGG 0.525749 1_3:+45355710 Msa0120450:CDS
GGCCACAAATGGCTCTCTCC+CGG 0.526173 1_3:+45355110 Msa0120450:CDS
CCCTTCAAGCCATAATATCA+AGG 0.529260 1_3:+45355568 Msa0120450:CDS
TGTTGAGAGAAGGAAAATAA+GGG 0.530179 1_3:-45351818 None:intergenic
GAACTCTGAAGAAAATATGT+AGG 0.533255 1_3:-45351783 None:intergenic
TTGATTCATCTCCAAAGCAT+AGG 0.533822 1_3:+45355323 Msa0120450:CDS
TACCGGGAGAGAGCCATTTG+TGG 0.536907 1_3:-45355112 None:intergenic
ATGATATTTGAGGTGACGAC+TGG 0.537784 1_3:-45352500 None:intergenic
CGTTTGAAGCCATGTTGCGC+GGG 0.546388 1_3:+45355593 Msa0120450:CDS
CAATGTTCCTGAATTTGTGA+GGG 0.549183 1_3:-45354885 None:intergenic
TGATATTATGGCTTGAAGGG+TGG 0.554035 1_3:-45355565 None:intergenic
TATGGGATGAACTTTGCATA+TGG 0.559537 1_3:+45354928 Msa0120450:CDS
TAAGGTTCTTTCCATGAACC+AGG 0.564705 1_3:-45352589 None:intergenic
AATGTTTAGAATTGTAAAGG+TGG 0.567886 1_3:-45355516 None:intergenic
GCTTTGGAGATGAATCAAAT+CGG 0.568789 1_3:-45355318 None:intergenic
CCGTCGGAGAATCTTCCGGC+AGG 0.570452 1_3:-45352634 None:intergenic
TGAATGTACTATTGCAACGT+TGG 0.572848 1_3:-45355418 None:intergenic
TCCTTCAAAACTAGGCACCT+TGG 0.574769 1_3:+45351924 Msa0120450:five_prime_UTR
CTACTTACTCCCGCGCAACA+TGG 0.578629 1_3:-45355602 None:intergenic
TCGTTTGAAGCCATGTTGCG+CGG 0.583492 1_3:+45355592 Msa0120450:CDS
GAATGCTGTATATAGTGAGT+TGG 0.586110 1_3:+45355736 Msa0120450:CDS
ATTGTTAGGGCTGCAAGCTG+AGG 0.588197 1_3:+45352477 Msa0120450:intron
TGCACCCAACACAAGCTGGA+TGG 0.589516 1_3:+45355714 Msa0120450:CDS
ATAACTATGATGTTGAGAGA+AGG 0.589710 1_3:-45351828 None:intergenic
CAAATTGAACCAAGAAGCCA+AGG 0.595369 1_3:+45355487 Msa0120450:CDS
AAATACAATTGAATGAACAA+TGG 0.603442 1_3:-45351853 None:intergenic
ACAATGTTCCTGAATTTGTG+AGG 0.612556 1_3:-45354886 None:intergenic
GAGAGAAGGAAAATAAGGGT+TGG 0.615653 1_3:-45351814 None:intergenic
GTCAGTTAAAACTCTACCGT+CGG 0.618067 1_3:-45352650 None:intergenic
GAGGATTGAGCAGTGGTCTG+AGG 0.625641 1_3:-45355392 None:intergenic
GCTAAGAGATACATTGCCAA+AGG 0.633098 1_3:-45356005 None:intergenic
GTAGGTGCTTTACAACCACT+TGG 0.634865 1_3:+45355362 Msa0120450:CDS
ACTATTGCAACGTTGGAACG+AGG 0.664844 1_3:-45355411 None:intergenic
AATAGCTATGAAAATGACCA+AGG 0.674457 1_3:-45351941 None:intergenic
GGGATGAACTTTGCATATGG+TGG 0.674519 1_3:+45354931 Msa0120450:CDS
TTGGAACGAGGATTGAGCAG+TGG 0.684303 1_3:-45355399 None:intergenic
CCTGCCGGAAGATTCTCCGA+CGG 0.737578 1_3:+45352634 Msa0120450:CDS
GTCTGAGGAAGACATCCAAG+TGG 0.739269 1_3:-45355377 None:intergenic
GGTTGTTATGGAGAGCTACG+AGG 0.763965 1_3:-45355445 None:intergenic
ATAGTGAAAGGAGAGAAACG+TGG 0.805186 1_3:-45351745 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAAGAAAAATCAAT+GGG - chr1_3:45352413-45352432 None:intergenic 10.0%
!! TATTAATTAAGAAAAATCAA+TGG - chr1_3:45352414-45352433 None:intergenic 10.0%
!! ATAAATAGAGAAATATAATA+CGG - chr1_3:45352894-45352913 None:intergenic 10.0%
!! ATTTAAAAATTATAAAAGAG+TGG + chr1_3:45353413-45353432 Msa0120450:intron 10.0%
!!! ATAGAAAACTATTTTAAAAT+GGG - chr1_3:45353466-45353485 None:intergenic 10.0%
!!! AATAGAAAACTATTTTAAAA+TGG - chr1_3:45353467-45353486 None:intergenic 10.0%
!!! ATTTTAAAATAGTTTTCTAT+TGG + chr1_3:45353466-45353485 Msa0120450:intron 10.0%
!! AGCATAAAATAAATTAATAA+GGG - chr1_3:45354586-45354605 None:intergenic 10.0%
!! TATAAAAATGTTAAATCATA+TGG + chr1_3:45354720-45354739 Msa0120450:intron 10.0%
!! CTAAAATAATATTAATTCTA+AGG + chr1_3:45354748-45354767 Msa0120450:intron 10.0%
!! AATAAATGTAATTATATAAG+AGG - chr1_3:45354803-45354822 None:intergenic 10.0%
!! ATTAAAATGAATTAATTTAC+CGG - chr1_3:45355132-45355151 None:intergenic 10.0%
!!! AATTCTATTTTTATTAATAG+AGG - chr1_3:45355179-45355198 None:intergenic 10.0%
!! TTCAATATACTTTAATAGAA+TGG + chr1_3:45352196-45352215 Msa0120450:intron 15.0%
!!! TTATTATAATTTTTGAGATG+TGG + chr1_3:45352910-45352929 Msa0120450:intron 15.0%
!!! TATTATAATTTTTGAGATGT+GGG + chr1_3:45352911-45352930 Msa0120450:intron 15.0%
!! AAAATTGAATATACGAAAAT+AGG - chr1_3:45353037-45353056 None:intergenic 15.0%
!!! ATTTCTAAAAATCTATTTAG+TGG - chr1_3:45353356-45353375 None:intergenic 15.0%
!! TTTCTTAGTATTTAGAAAAT+AGG + chr1_3:45353620-45353639 Msa0120450:intron 15.0%
!! TAAAAAAATATGACAAACTA+TGG - chr1_3:45354520-45354539 None:intergenic 15.0%
!! GAGCATAAAATAAATTAATA+AGG - chr1_3:45354587-45354606 None:intergenic 15.0%
!!! CTAAACATTATTTGAAATAT+GGG + chr1_3:45354911-45354930 Msa0120450:CDS 15.0%
!! TTAAAATGAATTAATTTACC+GGG - chr1_3:45355131-45355150 None:intergenic 15.0%
!!! AAAAATGTTTAGAATTGTAA+AGG - chr1_3:45355522-45355541 None:intergenic 15.0%
!! GAATAATGTTAAGAAATATT+CGG + chr1_3:45355652-45355671 Msa0120450:CDS 15.0%
!!! ATGAGATTTTATATAGTGAA+AGG - chr1_3:45351760-45351779 None:intergenic 20.0%
!! AAATACAATTGAATGAACAA+TGG - chr1_3:45351856-45351875 None:intergenic 20.0%
!!! CACAATACAATATAGTATTT+TGG + chr1_3:45352291-45352310 Msa0120450:intron 20.0%
!!! ATTATAATTTTTGAGATGTG+GGG + chr1_3:45352912-45352931 Msa0120450:intron 20.0%
!!! TCCATGATATATTTTACATT+TGG + chr1_3:45352980-45352999 Msa0120450:intron 20.0%
!! ACCAAATGTAAAATATATCA+TGG - chr1_3:45352984-45353003 None:intergenic 20.0%
!!! TTTTAGAAATGTTGTATTAG+AGG + chr1_3:45353366-45353385 Msa0120450:intron 20.0%
!! AATTCACAAAGAATTAATTC+AGG - chr1_3:45354119-45354138 None:intergenic 20.0%
!!! ATCAACCATAGTTTATTTTT+AGG + chr1_3:45354352-45354371 Msa0120450:intron 20.0%
!!! TCAACCATAGTTTATTTTTA+GGG + chr1_3:45354353-45354372 Msa0120450:intron 20.0%
!! AAATAAATTAATAAGGGTAG+TGG - chr1_3:45354580-45354599 None:intergenic 20.0%
!! CCATATTTCAAATAATGTTT+AGG - chr1_3:45354913-45354932 None:intergenic 20.0%
!!! CCTAAACATTATTTGAAATA+TGG + chr1_3:45354910-45354929 Msa0120450:CDS 20.0%
!!! TTAATTCATTTTAATCTGAG+CGG + chr1_3:45355137-45355156 Msa0120450:intron 20.0%
!!! TTTTGTTAAAATTCATGTAG+AGG - chr1_3:45355235-45355254 None:intergenic 20.0%
!! AACAAAATGATGCAAATAAA+TGG - chr1_3:45355814-45355833 None:intergenic 20.0%
!!! ATTTTGTTTCTTGTCTAATA+AGG + chr1_3:45355826-45355845 Msa0120450:three_prime_UTR 20.0%
!!! TAGTTTTGAAGGAAGTTAAA+AGG - chr1_3:45351917-45351936 None:intergenic 25.0%
!!! TTTTAACTTCCTTCAAAACT+AGG + chr1_3:45351916-45351935 Msa0120450:five_prime_UTR 25.0%
!! ATTTTCATAGCTATTCATCA+TGG + chr1_3:45351949-45351968 Msa0120450:exon 25.0%
! GGAACAAGTTAAAATAAAAG+GGG - chr1_3:45352392-45352411 None:intergenic 25.0%
! GGGAACAAGTTAAAATAAAA+GGG - chr1_3:45352393-45352412 None:intergenic 25.0%
! TGGGAACAAGTTAAAATAAA+AGG - chr1_3:45352394-45352413 None:intergenic 25.0%
!! AAAACGAACAATTCTTTTGT+AGG - chr1_3:45352526-45352545 None:intergenic 25.0%
!! ACAAAAGAATTGTTCGTTTT+TGG + chr1_3:45352526-45352545 Msa0120450:CDS 25.0%
! ATGCTATTAACATAATCAAC+TGG + chr1_3:45352711-45352730 Msa0120450:intron 25.0%
!! TTTCTTTCTTTCTCTTTTCT+TGG + chr1_3:45352756-45352775 Msa0120450:intron 25.0%
!! GATTACAAAGCATTCTTAAT+CGG + chr1_3:45353175-45353194 Msa0120450:intron 25.0%
! TTATCTGATTCACATATTGA+AGG - chr1_3:45353242-45353261 None:intergenic 25.0%
!! AAATAGTTTTCTATTGGAGA+TGG + chr1_3:45353472-45353491 Msa0120450:intron 25.0%
! CTTAGTATTTAGAAAATAGG+TGG + chr1_3:45353623-45353642 Msa0120450:intron 25.0%
! CAACTAAAAAAAATCGATAG+AGG + chr1_3:45353830-45353849 Msa0120450:intron 25.0%
! ACAATGCATTGTTATATACA+GGG - chr1_3:45353865-45353884 None:intergenic 25.0%
!!! TATTGCTTTGTTTTTCTTTG+AGG + chr1_3:45353905-45353924 Msa0120450:intron 25.0%
!! AAGTCTTTTGTGTACAATTT+TGG + chr1_3:45353933-45353952 Msa0120450:intron 25.0%
!!! AAGCTATGTGTCATTTTTAT+TGG + chr1_3:45354284-45354303 Msa0120450:intron 25.0%
!!! CAACCATAGTTTATTTTTAG+GGG + chr1_3:45354354-45354373 Msa0120450:intron 25.0%
! TAACCCCTAAAAATAAACTA+TGG - chr1_3:45354360-45354379 None:intergenic 25.0%
! ATACTAACGTTACATTTATG+TGG + chr1_3:45354829-45354848 Msa0120450:intron 25.0%
! GTATTTGATACATTTACTTC+AGG + chr1_3:45354961-45354980 Msa0120450:CDS 25.0%
! AAATGACTACAATCATTACT+TGG + chr1_3:45355089-45355108 Msa0120450:CDS 25.0%
!! AATGTTTAGAATTGTAAAGG+TGG - chr1_3:45355519-45355538 None:intergenic 25.0%
!! AGAAGCTCTAGTATAAAATA+TGG - chr1_3:45355778-45355797 None:intergenic 25.0%
!!! AAAGAAAATTTTGACTGAGA+AGG - chr1_3:45355946-45355965 None:intergenic 25.0%
! ATGCATATGTTTATTACCTT+TGG + chr1_3:45355989-45356008 Msa0120450:three_prime_UTR 25.0%
! GAACTCTGAAGAAAATATGT+AGG - chr1_3:45351786-45351805 None:intergenic 30.0%
! ACATATTTTCTTCAGAGTTC+TGG + chr1_3:45351786-45351805 Msa0120450:five_prime_UTR 30.0%
TGTTGAGAGAAGGAAAATAA+GGG - chr1_3:45351821-45351840 None:intergenic 30.0%
ATGTTGAGAGAAGGAAAATA+AGG - chr1_3:45351822-45351841 None:intergenic 30.0%
ATAACTATGATGTTGAGAGA+AGG - chr1_3:45351831-45351850 None:intergenic 30.0%
AATAGCTATGAAAATGACCA+AGG - chr1_3:45351944-45351963 None:intergenic 30.0%
!!! CATGTTTGTTTTTGAGCTAT+AGG - chr1_3:45352110-45352129 None:intergenic 30.0%
GAAAATCATACACATACACA+TGG - chr1_3:45352170-45352189 None:intergenic 30.0%
!!! ATAGTATTTTGGTGTGAATC+AGG + chr1_3:45352302-45352321 Msa0120450:intron 30.0%
!! ACATCTTGTTGTTCATTGTT+AGG + chr1_3:45352463-45352482 Msa0120450:intron 30.0%
!! CATCTTGTTGTTCATTGTTA+GGG + chr1_3:45352464-45352483 Msa0120450:intron 30.0%
! CTTTTGTAGGATGATATTTG+AGG - chr1_3:45352513-45352532 None:intergenic 30.0%
!!! TGAACCAGGTTTACTTTTTT+GGG - chr1_3:45352578-45352597 None:intergenic 30.0%
!!! ATGAACCAGGTTTACTTTTT+TGG - chr1_3:45352579-45352598 None:intergenic 30.0%
AAAAAAGTAAACCTGGTTCA+TGG + chr1_3:45352578-45352597 Msa0120450:CDS 30.0%
!!! AGAGTTTTAACTGACTTCAT+TGG + chr1_3:45352658-45352677 Msa0120450:CDS 30.0%
TAATAGCATTAGAGAGAGAT+GGG - chr1_3:45352700-45352719 None:intergenic 30.0%
TTAATAGCATTAGAGAGAGA+TGG - chr1_3:45352701-45352720 None:intergenic 30.0%
TAGAGGATTTGATGCTTATT+AGG + chr1_3:45353383-45353402 Msa0120450:intron 30.0%
AATGACCTGTGAAAATGAAT+GGG - chr1_3:45353516-45353535 None:intergenic 30.0%
GACAATGCATTGTTATATAC+AGG - chr1_3:45353866-45353885 None:intergenic 30.0%
ATGTGATCAGATTCAAAACT+AGG - chr1_3:45353995-45354014 None:intergenic 30.0%
!!! TAGTTTTGAATCTGATCACA+TGG + chr1_3:45353994-45354013 Msa0120450:intron 30.0%
AAAATGTGATTGAGAGTTTG+AGG + chr1_3:45354222-45354241 Msa0120450:intron 30.0%
AAATGTGATTGAGAGTTTGA+GGG + chr1_3:45354223-45354242 Msa0120450:intron 30.0%
AAAGCTAAATTGACACTAGA+GGG - chr1_3:45354478-45354497 None:intergenic 30.0%
AAAAGCTAAATTGACACTAG+AGG - chr1_3:45354479-45354498 None:intergenic 30.0%
! AAATTAATAAGGGTAGTGGT+TGG - chr1_3:45354576-45354595 None:intergenic 30.0%
!!! ATGCTTTTGCTTCTAGTTTA+CGG - chr1_3:45354665-45354684 None:intergenic 30.0%
TGATCTCAATCTCAAATACT+TGG - chr1_3:45354860-45354879 None:intergenic 30.0%
!! TCGATTTGAGTTGTCATATT+TGG - chr1_3:45354988-45355007 None:intergenic 30.0%
! AGACATTTTCTTGAATGAGT+TGG - chr1_3:45355020-45355039 None:intergenic 30.0%
AATAATTTCGTTTGATACGC+AGG + chr1_3:45355253-45355272 Msa0120450:intron 30.0%
ATAATTTCGTTTGATACGCA+GGG + chr1_3:45355254-45355273 Msa0120450:intron 30.0%
TTCTCTTAAATCCTATGCTT+TGG - chr1_3:45355337-45355356 None:intergenic 30.0%
GGATTTAAGAGAATTGTTGT+AGG + chr1_3:45355344-45355363 Msa0120450:CDS 30.0%
! ATTGGTTCAATAGGTTGTTA+TGG - chr1_3:45355460-45355479 None:intergenic 30.0%
TCAAACGATCCTTGATATTA+TGG - chr1_3:45355580-45355599 None:intergenic 30.0%
GTAAGTAGTCAGTATAATTG+TGG + chr1_3:45355617-45355636 Msa0120450:CDS 30.0%
! ATATTCGGTTTGTGAAAATC+CGG + chr1_3:45355667-45355686 Msa0120450:CDS 30.0%
!!! AATCAAGTTTCTTTTGGGAT+GGG + chr1_3:45355690-45355709 Msa0120450:CDS 30.0%
CGTTAAGTTATCCTTAAACT+CGG + chr1_3:45355869-45355888 Msa0120450:three_prime_UTR 30.0%
ATAAAAGGGGAATGTATTGC+AGG - chr1_3:45352379-45352398 None:intergenic 35.0%
!!! TTTACTTTTTTGGGTGTTGC+CGG - chr1_3:45352569-45352588 None:intergenic 35.0%
AACACCCAAAAAAGTAAACC+TGG + chr1_3:45352571-45352590 Msa0120450:CDS 35.0%
AAAGCACAAGAAAGGTAAAG+TGG - chr1_3:45352958-45352977 None:intergenic 35.0%
! CATGGATAAAAGCACAAGAA+AGG - chr1_3:45352966-45352985 None:intergenic 35.0%
ATGACCTGTGAAAATGAATG+GGG - chr1_3:45353515-45353534 None:intergenic 35.0%
GAATGACCTGTGAAAATGAA+TGG - chr1_3:45353517-45353536 None:intergenic 35.0%
TCTTTGTGAATTCCTCACTT+TGG + chr1_3:45354127-45354146 Msa0120450:intron 35.0%
! AGATAAACGTTAAGAGCATG+TGG - chr1_3:45354166-45354185 None:intergenic 35.0%
!! AACTAGAAGCAAAAGCATTG+TGG + chr1_3:45354667-45354686 Msa0120450:intron 35.0%
CAATGTTCCTGAATTTGTGA+GGG - chr1_3:45354888-45354907 None:intergenic 35.0%
ACAATGTTCCTGAATTTGTG+AGG - chr1_3:45354889-45354908 None:intergenic 35.0%
TATGGGATGAACTTTGCATA+TGG + chr1_3:45354928-45354947 Msa0120450:CDS 35.0%
!! TTCTTGAATGAGTTGGTTGA+AGG - chr1_3:45355013-45355032 None:intergenic 35.0%
AATCATTACTTGGCCACAAA+TGG + chr1_3:45355099-45355118 Msa0120450:CDS 35.0%
ACAACTGAAGCAATGAAAGA+TGG - chr1_3:45355284-45355303 None:intergenic 35.0%
!! GCTTTGGAGATGAATCAAAT+CGG - chr1_3:45355321-45355340 None:intergenic 35.0%
TTGATTCATCTCCAAAGCAT+AGG + chr1_3:45355323-45355342 Msa0120450:CDS 35.0%
TGAATGTACTATTGCAACGT+TGG - chr1_3:45355421-45355440 None:intergenic 35.0%
TTCTTGGTTCAATTTGGTCA+CGG - chr1_3:45355483-45355502 None:intergenic 35.0%
CCTTGATATTATGGCTTGAA+GGG - chr1_3:45355571-45355590 None:intergenic 35.0%
TCCTTGATATTATGGCTTGA+AGG - chr1_3:45355572-45355591 None:intergenic 35.0%
! ATCCGGAATCAAGTTTCTTT+TGG + chr1_3:45355684-45355703 Msa0120450:CDS 35.0%
! TCCGGAATCAAGTTTCTTTT+GGG + chr1_3:45355685-45355704 Msa0120450:CDS 35.0%
TCCCAAAAGAAACTTGATTC+CGG - chr1_3:45355689-45355708 None:intergenic 35.0%
!! GAATCAAGTTTCTTTTGGGA+TGG + chr1_3:45355689-45355708 Msa0120450:CDS 35.0%
GAATGCTGTATATAGTGAGT+TGG + chr1_3:45355736-45355755 Msa0120450:CDS 35.0%
! TATAGTGAGTTGGAGAAGAA+AGG + chr1_3:45355746-45355765 Msa0120450:CDS 35.0%
ATACAAAGAAGCCGAGTTTA+AGG - chr1_3:45355883-45355902 None:intergenic 35.0%
ATAGTGAAAGGAGAGAAACG+TGG - chr1_3:45351748-45351767 None:intergenic 40.0%
GAGAGAAGGAAAATAAGGGT+TGG - chr1_3:45351817-45351836 None:intergenic 40.0%
! ATGATATTTGAGGTGACGAC+TGG - chr1_3:45352503-45352522 None:intergenic 40.0%
GGAGACTCTTATGTTGATAC+CGG + chr1_3:45352547-45352566 Msa0120450:CDS 40.0%
TAAGGTTCTTTCCATGAACC+AGG - chr1_3:45352592-45352611 None:intergenic 40.0%
GGTTCATGGAAAGAACCTTA+TGG + chr1_3:45352592-45352611 Msa0120450:CDS 40.0%
GTCAGTTAAAACTCTACCGT+CGG - chr1_3:45352653-45352672 None:intergenic 40.0%
TAGAGAGAGATGGGTGAAAT+AGG - chr1_3:45352691-45352710 None:intergenic 40.0%
! TGTGGGGTTTATTTCTTCGT+TGG + chr1_3:45352928-45352947 Msa0120450:intron 40.0%
AACACAATCACCACACATTG+AGG - chr1_3:45353013-45353032 None:intergenic 40.0%
TGACCTGTGAAAATGAATGG+GGG - chr1_3:45353514-45353533 None:intergenic 40.0%
! CATTTTCACAGGTCATTCGT+TGG + chr1_3:45353519-45353538 Msa0120450:intron 40.0%
ATAGCAATCCCTTGAGGATA+GGG - chr1_3:45353888-45353907 None:intergenic 40.0%
AATAGCAATCCCTTGAGGAT+AGG - chr1_3:45353889-45353908 None:intergenic 40.0%
AAAGCAATAGCAATCCCTTG+AGG - chr1_3:45353894-45353913 None:intergenic 40.0%
TAAGCATATAGGCCAAAGTG+AGG - chr1_3:45354142-45354161 None:intergenic 40.0%
GAGCATGTGGTTAAGCATAT+AGG - chr1_3:45354153-45354172 None:intergenic 40.0%
TGATTGAGAGTTTGAGGGAT+TGG + chr1_3:45354228-45354247 Msa0120450:intron 40.0%
! AGTGGGTTTAGGACAAACTA+TGG - chr1_3:45354387-45354406 None:intergenic 40.0%
! TAGTTTGTCCTAAACCCACT+TGG + chr1_3:45354387-45354406 Msa0120450:intron 40.0%
AGTTTGTCCTAAACCCACTT+GGG + chr1_3:45354388-45354407 Msa0120450:intron 40.0%
TTCCTGAATTTGTGAGGGAT+TGG - chr1_3:45354883-45354902 None:intergenic 40.0%
AACTTTGCATATGGTGGTAC+AGG + chr1_3:45354937-45354956 Msa0120450:CDS 40.0%
ATTGCTTATGTCTCTGTTGC+TGG + chr1_3:45355066-45355085 Msa0120450:CDS 40.0%
CTTGGCTTCTTGGTTCAATT+TGG - chr1_3:45355489-45355508 None:intergenic 40.0%
CAAATTGAACCAAGAAGCCA+AGG + chr1_3:45355487-45355506 Msa0120450:CDS 40.0%
TGATATTATGGCTTGAAGGG+TGG - chr1_3:45355568-45355587 None:intergenic 40.0%
CCCTTCAAGCCATAATATCA+AGG + chr1_3:45355568-45355587 Msa0120450:CDS 40.0%
TCCTTCAAAACTAGGCACCT+TGG + chr1_3:45351924-45351943 Msa0120450:five_prime_UTR 45.0%
!!! ACCAAGGTGCCTAGTTTTGA+AGG - chr1_3:45351928-45351947 None:intergenic 45.0%
CATCTTCTCATGTCTTTCGC+TGG + chr1_3:45351991-45352010 Msa0120450:CDS 45.0%
! CTGGTTCTTGTACTTCTCTC+AGG + chr1_3:45352010-45352029 Msa0120450:CDS 45.0%
CCTTATGGCATAACCTTTCC+CGG + chr1_3:45352607-45352626 Msa0120450:CDS 45.0%
! ACTCCCCCATTCATTTTCAC+AGG + chr1_3:45353508-45353527 Msa0120450:intron 45.0%
ATGCATTGTCCCTATCCTCA+AGG + chr1_3:45353876-45353895 Msa0120450:intron 45.0%
TGCATTGTCCCTATCCTCAA+GGG + chr1_3:45353877-45353896 Msa0120450:intron 45.0%
CACCAATCCCTCACAAATTC+AGG + chr1_3:45354878-45354897 Msa0120450:CDS 45.0%
GGGATGAACTTTGCATATGG+TGG + chr1_3:45354931-45354950 Msa0120450:CDS 45.0%
GTAGGTGCTTTACAACCACT+TGG + chr1_3:45355362-45355381 Msa0120450:CDS 45.0%
ACTATTGCAACGTTGGAACG+AGG - chr1_3:45355414-45355433 None:intergenic 45.0%
!! TGGTCACGGATTGGTTCAAT+AGG - chr1_3:45355469-45355488 None:intergenic 45.0%
GGTTCAATTTGGTCACGGAT+TGG - chr1_3:45355478-45355497 None:intergenic 45.0%
TGTAAAGGTGGTGTGATCCT+TGG - chr1_3:45355507-45355526 None:intergenic 45.0%
CATTCCATCCAGCTTGTGTT+GGG - chr1_3:45355721-45355740 None:intergenic 45.0%
AGAGAAACGTGGCCAAGACT+TGG - chr1_3:45351737-45351756 None:intergenic 50.0%
ATTGTTAGGGCTGCAAGCTG+AGG + chr1_3:45352477-45352496 Msa0120450:intron 50.0%
CCGGGAAAGGTTATGCCATA+AGG - chr1_3:45352610-45352629 None:intergenic 50.0%
! AATCTTCCGGCAGGTTTTCC+GGG - chr1_3:45352628-45352647 None:intergenic 50.0%
! GAATCTTCCGGCAGGTTTTC+CGG - chr1_3:45352629-45352648 None:intergenic 50.0%
TCTACCGTCGGAGAATCTTC+CGG - chr1_3:45352641-45352660 None:intergenic 50.0%
TGGTTGTCTGCCTCAATGTG+TGG + chr1_3:45353000-45353019 Msa0120450:intron 50.0%
! TTGGGTTGCCCTAGTGGTAT+TGG + chr1_3:45354406-45354425 Msa0120450:intron 50.0%
!! TTGCCCTAGTGGTATTGGCT+TGG + chr1_3:45354411-45354430 Msa0120450:intron 50.0%
!! TGCCCTAGTGGTATTGGCTT+GGG + chr1_3:45354412-45354431 Msa0120450:intron 50.0%
GTCCCAAGCCAATACCACTA+GGG - chr1_3:45354417-45354436 None:intergenic 50.0%
AGTCCCAAGCCAATACCACT+AGG - chr1_3:45354418-45354437 None:intergenic 50.0%
!! AGTGGTATTGGCTTGGGACT+TGG + chr1_3:45354418-45354437 Msa0120450:intron 50.0%
!! GTGGTATTGGCTTGGGACTT+GGG + chr1_3:45354419-45354438 Msa0120450:intron 50.0%
GAATCGAACCTGAGACCTTG+AGG - chr1_3:45354456-45354475 None:intergenic 50.0%
GTCTGAGGAAGACATCCAAG+TGG - chr1_3:45355380-45355399 None:intergenic 50.0%
TTGGAACGAGGATTGAGCAG+TGG - chr1_3:45355402-45355421 None:intergenic 50.0%
GGTTGTTATGGAGAGCTACG+AGG - chr1_3:45355448-45355467 None:intergenic 50.0%
TGGTGTGATCCTTGGCTTCT+TGG - chr1_3:45355499-45355518 None:intergenic 50.0%
! TCGTTTGAAGCCATGTTGCG+CGG + chr1_3:45355592-45355611 Msa0120450:CDS 50.0%
GCATTCCATCCAGCTTGTGT+TGG - chr1_3:45355722-45355741 None:intergenic 50.0%
ACCTTTCCCGGAAAACCTGC+CGG + chr1_3:45352619-45352638 Msa0120450:CDS 55.0%
! AGGGCAACCCAAGTGGGTTT+AGG - chr1_3:45354398-45354417 None:intergenic 55.0%
ACCACTAGGGCAACCCAAGT+GGG - chr1_3:45354404-45354423 None:intergenic 55.0%
TACCACTAGGGCAACCCAAG+TGG - chr1_3:45354405-45354424 None:intergenic 55.0%
TCGAACCTGAGACCTTGAGG+AGG - chr1_3:45354453-45354472 None:intergenic 55.0%
TACCGGGAGAGAGCCATTTG+TGG - chr1_3:45355115-45355134 None:intergenic 55.0%
GAGGATTGAGCAGTGGTCTG+AGG - chr1_3:45355395-45355414 None:intergenic 55.0%
! CGTTTGAAGCCATGTTGCGC+GGG + chr1_3:45355593-45355612 Msa0120450:CDS 55.0%
CTACTTACTCCCGCGCAACA+TGG - chr1_3:45355605-45355624 None:intergenic 55.0%
TGCACCCAACACAAGCTGGA+TGG + chr1_3:45355714-45355733 Msa0120450:CDS 55.0%
! TCCGGCAGGTTTTCCGGGAA+AGG - chr1_3:45352623-45352642 None:intergenic 60.0%
CCTGCCGGAAGATTCTCCGA+CGG + chr1_3:45352634-45352653 Msa0120450:CDS 60.0%
! ACCCACTTGGGTTGCCCTAG+TGG + chr1_3:45354400-45354419 Msa0120450:intron 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG + chr1_3:45354438-45354457 Msa0120450:intron 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG + chr1_3:45354445-45354464 Msa0120450:intron 60.0%
GGCCACAAATGGCTCTCTCC+CGG + chr1_3:45355110-45355129 Msa0120450:CDS 60.0%
GGGTTGCACCCAACACAAGC+TGG + chr1_3:45355710-45355729 Msa0120450:CDS 60.0%
CCGTCGGAGAATCTTCCGGC+AGG - chr1_3:45352637-45352656 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 45351727 45356016 45351727 ID=Msa0120450;Name=Msa0120450
chr1_3 mRNA 45351727 45356016 45351727 ID=Msa0120450-mRNA-1;Parent=Msa0120450;Name=Msa0120450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=241|1|1|1|1|1|4|226|349
chr1_3 exon 45351727 45352031 45351727 ID=Msa0120450-mRNA-1:exon:13569;Parent=Msa0120450-mRNA-1
chr1_3 exon 45352485 45352679 45352485 ID=Msa0120450-mRNA-1:exon:13570;Parent=Msa0120450-mRNA-1
chr1_3 exon 45354857 45355131 45354857 ID=Msa0120450-mRNA-1:exon:13571;Parent=Msa0120450-mRNA-1
chr1_3 exon 45355275 45356016 45355275 ID=Msa0120450-mRNA-1:exon:13572;Parent=Msa0120450-mRNA-1
chr1_3 five_prime_UTR 45351727 45351967 45351727 ID=Msa0120450-mRNA-1:five_prime_utr;Parent=Msa0120450-mRNA-1
chr1_3 CDS 45351968 45352031 45351968 ID=Msa0120450-mRNA-1:cds;Parent=Msa0120450-mRNA-1
chr1_3 CDS 45352485 45352679 45352485 ID=Msa0120450-mRNA-1:cds;Parent=Msa0120450-mRNA-1
chr1_3 CDS 45354857 45355131 45354857 ID=Msa0120450-mRNA-1:cds;Parent=Msa0120450-mRNA-1
chr1_3 CDS 45355275 45355790 45355275 ID=Msa0120450-mRNA-1:cds;Parent=Msa0120450-mRNA-1
chr1_3 three_prime_UTR 45355791 45356016 45355791 ID=Msa0120450-mRNA-1:three_prime_utr;Parent=Msa0120450-mRNA-1
Gene Sequence

>Msa0120450

ATGGACTCGTATAAGCAACTTTTCATCTTCTCATGTCTTTCGCTGGTTCTTGTACTTCTCTCAGGGCTGCAAGCTGAGGCCAGTCGTCACCTCAAATATCATCCTACAAAAGAATTGTTCGTTTTTGGAGACTCTTATGTTGATACCGGCAACACCCAAAAAAGTAAACCTGGTTCATGGAAAGAACCTTATGGCATAACCTTTCCCGGAAAACCTGCCGGAAGATTCTCCGACGGTAGAGTTTTAACTGACTTCATTGCCAAGTATTTGAGATTGAGATCACCAATCCCTCACAAATTCAGGAACATTGTGCCTAAACATTATTTGAAATATGGGATGAACTTTGCATATGGTGGTACAGGTGTATTTGATACATTTACTTCAGGACCAAATATGACAACTCAAATCGATTCCTTCAACCAACTCATTCAAGAAAATGTCTATACTCATTCAGATCTCAACAAAGCTATTGCTTATGTCTCTGTTGCTGGAAATGACTACAATCATTACTTGGCCACAAATGGCTCTCTCCCGGGTTTTCCATCTTTCATTGCTTCAGTTGTTAAACAAACAACGACCGATTTGATTCATCTCCAAAGCATAGGATTTAAGAGAATTGTTGTAGGTGCTTTACAACCACTTGGATGTCTTCCTCAGACCACTGCTCAATCCTCGTTCCAACGTTGCAATAGTACATTCAACGACCTCGTAGCTCTCCATAACAACCTATTGAACCAATCCGTGACCAAATTGAACCAAGAAGCCAAGGATCACACCACCTTTACAATTCTAAACATTTTTGACAGTTTCGCGTCTGTGTTGAACCACCCTTCAAGCCATAATATCAAGGATCGTTTGAAGCCATGTTGCGCGGGAGTAAGTAGTCAGTATAATTGTGGAAGTGTAGACGAGAATAATGTTAAGAAATATTCGGTTTGTGAAAATCCGGAATCAAGTTTCTTTTGGGATGGGTTGCACCCAACACAAGCTGGATGGAATGCTGTATATAGTGAGTTGGAGAAGAAAGGTCTTCACCATATTTTATACTAG
Protein sequence

>Msa0120450

MDSYKQLFIFSCLSLVLVLLSGLQAEASRHLKYHPTKELFVFGDSYVDTGNTQKSKPGSWKEPYGITFPGKPAGRFSDGRVLTDFIAKYLRLRSPIPHKFRNIVPKHYLKYGMNFAYGGTGVFDTFTSGPNMTTQIDSFNQLIQENVYTHSDLNKAIAYVSVAGNDYNHYLATNGSLPGFPSFIASVVKQTTTDLIHLQSIGFKRIVVGALQPLGCLPQTTAQSSFQRCNSTFNDLVALHNNLLNQSVTKLNQEAKDHTTFTILNIFDSFASVLNHPSSHNIKDRLKPCCAGVSSQYNCGSVDENNVKKYSVCENPESSFFWDGLHPTQAGWNAVYSELEKKGLHHILY*