AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0967870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967870 MtrunA17_Chr2g0331411 95.238 315 13 2 1 314 1 314 0.0 615
Msa0967870 MtrunA17_Chr8g0390281 53.988 326 93 12 1 314 1 281 2.48e-97 290
Msa0967870 MtrunA17_Chr5g0411501 48.563 348 107 10 1 315 16 324 7.11e-97 291
Msa0967870 MtrunA17_Chr8g0366881 49.547 331 120 9 6 318 39 340 1.36e-94 285
Msa0967870 MtrunA17_Chr6g0486121 52.685 298 75 9 20 315 10 243 9.52e-85 257
Msa0967870 MtrunA17_Chr5g0428141 48.665 337 121 13 2 315 29 336 8.07e-83 255
Msa0967870 MtrunA17_Chr1g0190711 44.108 297 95 8 23 315 13 242 1.04e-60 195
Msa0967870 MtrunA17_Chr1g0184791 64.706 153 48 3 167 315 84 234 3.59e-60 193
Msa0967870 MtrunA17_Chr7g0260641 63.333 150 50 3 167 315 94 239 3.60e-59 191
Msa0967870 MtrunA17_Chr1g0187921 62.667 150 53 2 167 315 78 225 3.63e-58 188
Msa0967870 MtrunA17_Chr1g0166011 49.746 197 66 6 128 318 17 186 3.24e-51 168
Msa0967870 MtrunA17_Chr1g0184801 44.493 227 100 5 90 315 1 202 2.81e-50 167
Msa0967870 MtrunA17_Chr7g0260621 48.571 175 64 4 143 315 52 202 7.56e-46 155
Msa0967870 MtrunA17_Chr1g0187961 54.362 149 41 5 166 314 57 178 4.06e-45 152
Msa0967870 MtrunA17_Chr1g0183251 44.199 181 67 7 171 318 81 260 4.68e-33 124
Msa0967870 MtrunA17_Chr4g0004181 48.649 148 46 3 170 317 52 169 1.74e-32 119
Msa0967870 MtrunA17_Chr2g0330951 39.785 186 90 5 154 317 78 263 2.24e-31 119
Msa0967870 MtrunA17_Chr2g0332141 52.336 107 39 3 206 309 6 103 1.87e-29 109
Msa0967870 MtrunA17_Chr8g0340731 40.964 166 81 4 169 317 104 269 2.71e-29 114
Msa0967870 MtrunA17_Chr4g0069561 34.899 149 64 7 166 308 60 181 3.28e-17 78.6
Msa0967870 MtrunA17_Chr3g0137601 30.128 156 78 6 163 311 79 210 1.86e-16 77.4
Msa0967870 MtrunA17_Chr7g0270851 39.423 104 49 3 204 307 66 155 5.53e-15 72.0
Msa0967870 MtrunA17_Chr1g0193861 39.216 102 48 2 206 307 83 170 6.56e-15 72.0
Msa0967870 MtrunA17_Chr1g0209181 30.137 146 80 4 163 307 44 168 5.86e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967870 AT2G22670.5 49.533 321 118 6 6 315 21 308 2.63e-95 286
Msa0967870 AT2G22670.2 49.533 321 118 6 6 315 21 308 2.63e-95 286
Msa0967870 AT4G29080.1 52.226 337 100 12 1 318 3 297 1.82e-94 284
Msa0967870 AT2G22670.3 49.375 320 118 6 6 314 21 307 2.11e-94 284
Msa0967870 AT2G22670.1 49.375 320 118 6 6 314 21 307 2.11e-94 284
Msa0967870 AT2G22670.4 49.221 321 119 6 6 315 38 325 2.72e-94 285
Msa0967870 AT5G65670.2 47.222 324 126 9 6 315 33 325 4.47e-84 258
Msa0967870 AT5G65670.1 47.222 324 126 9 6 315 33 325 5.96e-84 258
Msa0967870 AT4G14550.2 42.857 294 88 6 25 315 1 217 1.13e-63 202
Msa0967870 AT4G14550.1 42.517 294 89 6 25 315 1 217 5.41e-63 201
Msa0967870 AT3G04730.1 51.389 216 83 4 115 314 15 224 3.96e-61 196
Msa0967870 AT3G23050.1 40.134 299 98 7 25 315 6 231 6.30e-56 183
Msa0967870 AT1G04250.1 50.259 193 83 5 127 315 35 218 1.92e-52 173
Msa0967870 AT4G14550.3 39.706 272 84 6 25 293 1 195 1.77e-49 164
Msa0967870 AT1G04240.1 56.209 153 46 4 166 318 58 189 1.97e-48 162
Msa0967870 AT5G43700.1 51.705 176 59 6 140 315 33 182 1.32e-47 159
Msa0967870 AT1G04240.2 55.844 154 47 4 165 318 157 289 1.45e-47 162
Msa0967870 AT3G23030.1 49.162 179 56 5 139 314 24 170 4.35e-44 150
Msa0967870 AT3G23030.2 49.162 179 56 5 139 314 111 257 2.91e-43 150
Msa0967870 AT3G23050.2 37.545 277 92 7 25 293 6 209 8.04e-43 148
Msa0967870 AT1G52830.1 44.578 166 64 4 152 317 50 187 4.78e-41 142
Msa0967870 AT4G14560.1 53.374 163 45 4 150 311 32 164 4.18e-40 139
Msa0967870 AT3G15540.1 48.485 165 60 5 159 322 56 196 3.67e-39 138
Msa0967870 AT4G28640.3 44.571 175 77 5 157 315 72 242 9.75e-36 130
Msa0967870 AT4G28640.1 44.509 173 76 5 157 313 72 240 1.88e-35 130
Msa0967870 AT4G28640.2 44.509 173 76 5 157 313 72 240 1.43e-34 129
Msa0967870 AT1G15580.1 46.528 144 44 3 167 309 48 159 8.26e-34 123
Msa0967870 AT2G33310.2 38.830 188 90 2 149 317 53 234 1.35e-33 125
Msa0967870 AT2G33310.3 39.674 184 85 3 154 317 56 233 1.77e-33 124
Msa0967870 AT2G33310.1 39.674 184 85 3 154 317 56 233 1.77e-33 124
Msa0967870 AT3G16500.1 37.198 207 104 5 126 310 50 252 2.02e-31 119
Msa0967870 AT3G16500.2 37.198 207 104 5 126 310 50 252 2.07e-31 119
Msa0967870 AT1G04550.2 38.122 181 82 2 155 314 52 223 6.36e-31 117
Msa0967870 AT4G14550.4 35.841 226 67 5 25 247 1 151 5.88e-29 110
Msa0967870 AT1G04100.1 39.286 168 74 4 174 315 95 260 2.02e-28 111
Msa0967870 AT1G51950.1 38.012 171 82 3 160 310 84 250 6.64e-28 110
Msa0967870 AT5G25890.1 40.000 145 64 4 171 315 47 168 2.04e-25 101
Msa0967870 AT3G23050.3 32.900 231 76 7 25 247 6 165 8.32e-24 96.7
Msa0967870 AT3G17600.1 37.241 145 63 6 164 307 37 154 1.13e-20 87.8
Msa0967870 AT3G62100.1 42.574 101 43 2 207 307 83 168 5.59e-18 80.9
Msa0967870 AT2G46990.1 41.584 101 44 2 207 307 85 170 1.82e-17 79.7
Msa0967870 AT4G32280.2 35.644 101 45 2 207 307 118 198 3.39e-14 71.2
Msa0967870 AT4G32280.1 28.571 168 69 4 171 307 93 240 4.36e-14 71.6
Msa0967870 AT3G62100.2 41.379 87 36 2 207 293 83 154 3.05e-13 67.0
Msa0967870 AT2G46990.2 41.379 87 36 2 207 293 85 156 3.19e-13 67.0
Msa0967870 AT1G15050.2 36.190 105 51 1 208 312 62 150 8.89e-12 63.2
Msa0967870 AT1G15050.1 36.190 105 51 1 208 312 94 182 1.52e-11 63.2
Msa0967870 AT2G01200.2 34.127 126 63 2 187 312 83 188 1.87e-11 62.8
Msa0967870 AT2G01200.1 34.127 126 63 2 187 312 83 188 1.87e-11 62.8

Find 95 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAGGAAGTTTGAGTTTA+TGG 0.105721 6_3:+97982817 Msa0967870:three_prime_UTR
TTACACTCTAGATTTGTTTA+AGG 0.177148 6_3:+97982459 Msa0967870:CDS
TGCAATTCTCCTGGACTTCC+TGG 0.219552 6_3:+97982005 Msa0967870:CDS
TTTGAACAATTTATGTAGTT+TGG 0.243085 6_3:+97983042 Msa0967870:three_prime_UTR
AATGTTCAAAAGAACCTTCT+TGG 0.276149 6_3:-97980404 None:intergenic
TGCTTGTAGGTGATGTTCCT+TGG 0.297899 6_3:+97982117 Msa0967870:CDS
GATGCCATTGATGAGTCTTC+TGG 0.307952 6_3:+97980852 Msa0967870:CDS
GAAAAGAATAAACAGGTTAA+TGG 0.313899 6_3:+97981044 Msa0967870:CDS
TATCAGTGAATTCTCCTCTT+TGG 0.315505 6_3:-97982778 None:intergenic
CTGTAATAGGGCACAGGTTG+TGG 0.328430 6_3:+97981499 Msa0967870:intron
GCTTGTAGGTGATGTTCCTT+GGG 0.334696 6_3:+97982118 Msa0967870:CDS
CAAGACCTACAACAACTATA+TGG 0.360524 6_3:+97981670 Msa0967870:CDS
TCACTGATATGCATATATAA+AGG 0.364308 6_3:+97982792 Msa0967870:exon
ATGAAAGGCTCCGAGGCAAT+TGG 0.372758 6_3:+97982421 Msa0967870:CDS
AATGTTCTTCAAATCCTTGT+TGG 0.373464 6_3:-97980766 None:intergenic
TCTTTGAGGGATCTTCTTCA+TGG 0.378941 6_3:+97982050 Msa0967870:CDS
CCTATGTAATCATGTTCTAA+TGG 0.385937 6_3:-97980600 None:intergenic
ATCTTCTTCTCTCAACTTCA+AGG 0.387877 6_3:+97980653 Msa0967870:CDS
TTTAGTTAGTAGAATTCATC+TGG 0.388369 6_3:+97982909 Msa0967870:three_prime_UTR
TTGTGCACCTTTGAAGTTTG+TGG 0.392548 6_3:+97982979 Msa0967870:three_prime_UTR
TCTCTATGTAAAAGTCAGTA+TGG 0.396729 6_3:+97981616 Msa0967870:CDS
AAGTTCCATATAGTTGTTGT+AGG 0.402215 6_3:-97981675 None:intergenic
ATGTTCAAAAGAACCTTCTT+GGG 0.409898 6_3:-97980403 None:intergenic
TTGATGAGTCTTCTGGGAAA+TGG 0.428366 6_3:+97980859 Msa0967870:CDS
AGATCAACCTTTCTGAGATA+AGG 0.437164 6_3:-97981647 None:intergenic
TTTCCAACATTCCCTCCTCT+TGG 0.438896 6_3:-97980927 None:intergenic
ATGAAGATAAAGATGGAGAT+TGG 0.439416 6_3:+97982093 Msa0967870:CDS
CCTGGACTTCCTGGGAAAGA+TGG 0.446287 6_3:+97982014 Msa0967870:CDS
AAATATGTGTATATATTCTC+TGG 0.453827 6_3:-97982940 None:intergenic
ATGCCATTGATGAGTCTTCT+GGG 0.457749 6_3:+97980853 Msa0967870:CDS
TTTGTGGCTGTATAAAAGAA+TGG 0.458305 6_3:+97982995 Msa0967870:three_prime_UTR
TGTACATGAAAAGAATAAAC+AGG 0.460606 6_3:+97981037 Msa0967870:CDS
TGTAATAGGGCACAGGTTGT+GGG 0.465911 6_3:+97981500 Msa0967870:intron
GACTAAGTGAGAGCTCTTTG+AGG 0.466933 6_3:+97982036 Msa0967870:CDS
TCAGGTCAATGCAATTCTCC+TGG 0.470704 6_3:+97981996 Msa0967870:intron
CAAGAGCCATGGGAAAATCT+AGG 0.474403 6_3:+97982724 Msa0967870:CDS
CCATCTTTCCCAGGAAGTCC+AGG 0.476059 6_3:-97982014 None:intergenic
AAGAACCTTGTAGCTAGTGT+TGG 0.483602 6_3:+97980810 Msa0967870:CDS
TGAAAGGCTCCGAGGCAATT+GGG 0.483983 6_3:+97982422 Msa0967870:CDS
CCGACTCGTGTAGGAGACTA+AGG 0.487592 6_3:+97982395 Msa0967870:CDS
TTTCGAAACGATCGAATTGG+TGG 0.491043 6_3:-97981527 None:intergenic
AGTGAAGATGGGACGCTGCC+CGG 0.493172 6_3:+97983100 Msa0967870:three_prime_UTR
ACATAGAGACAGTCAAATCC+TGG 0.496327 6_3:-97981602 None:intergenic
TATACAGCCACAAACTTCAA+AGG 0.497093 6_3:-97982986 None:intergenic
GTTAGTACCAATGGTAAAGC+AGG 0.504295 6_3:-97981723 None:intergenic
TCAGTTGCTACTGCTGCTGC+TGG 0.505717 6_3:+97980726 Msa0967870:CDS
GATGGAGATTGGATGCTTGT+AGG 0.506785 6_3:+97982104 Msa0967870:CDS
CTATCAGGAGATTCACAACC+AGG 0.513603 6_3:-97980699 None:intergenic
GAGCTCAGACTAGGCTTACC+TGG 0.513881 6_3:+97980681 Msa0967870:CDS
TGGAGTTTCTCTATGAATGA+TGG 0.515427 6_3:+97980879 Msa0967870:CDS
TTTAGCAAATAATCCATCAA+TGG 0.515926 6_3:+97980623 Msa0967870:CDS
GCTAGTGTTGGAGCTAAAAG+AGG 0.516388 6_3:+97980822 Msa0967870:CDS
GTTGCTACTGCTGCTGCTGG+TGG 0.518150 6_3:+97980729 Msa0967870:CDS
TAGCTCCAACACTAGCTACA+AGG 0.519601 6_3:-97980815 None:intergenic
CCATTAGAACATGATTACAT+AGG 0.521656 6_3:+97980600 Msa0967870:CDS
GGCTCCGAGGCAATTGGGCT+AGG 0.521923 6_3:+97982427 Msa0967870:CDS
GATGAAGCTGAGGGAAAACC+AGG 0.522587 6_3:+97981584 Msa0967870:CDS
GGTAGGAAATCGGTTTGCTA+TGG 0.523498 6_3:-97983167 None:intergenic
ATGTTCACCTGCTTTACCAT+TGG 0.525163 6_3:+97981716 Msa0967870:CDS
TAGTAGCATAGGAGAGGAGT+TGG 0.526621 6_3:-97980438 None:intergenic
TCTCCAAGAGGAGGGAATGT+TGG 0.528075 6_3:+97980924 Msa0967870:CDS
TCACTTAGTCCATCTTTCCC+AGG 0.528669 6_3:-97982023 None:intergenic
ACTAAGTGAGAGCTCTTTGA+GGG 0.537995 6_3:+97982037 Msa0967870:CDS
GCAATTCTCCTGGACTTCCT+GGG 0.538453 6_3:+97982006 Msa0967870:CDS
CTTACATATGAAGATAAAGA+TGG 0.540325 6_3:+97982086 Msa0967870:CDS
AGCATAGGAGAGGAGTTGGC+TGG 0.541759 6_3:-97980434 None:intergenic
CATACCTAGCCCAATTGCCT+CGG 0.543011 6_3:-97982431 None:intergenic
GTTTGCAGCTCCAAGAGCCA+TGG 0.546429 6_3:+97982713 Msa0967870:intron
TATGTAAAAGTCAGTATGGA+TGG 0.548265 6_3:+97981620 Msa0967870:CDS
AGTCTCTTTCTTTGCCAACA+AGG 0.555451 6_3:+97980752 Msa0967870:CDS
AAAGAAACATACTTTGCAGC+AGG 0.558479 6_3:-97981089 None:intergenic
TGCATATATAAAGGTTTACA+AGG 0.561342 6_3:+97982801 Msa0967870:three_prime_UTR
TTTGCAGCTCCAAGAGCCAT+GGG 0.568102 6_3:+97982714 Msa0967870:intron
TGATATGTATGTAGTAGCAT+AGG 0.570912 6_3:-97980449 None:intergenic
TCTATGAATGATGGATCTGA+AGG 0.572939 6_3:+97980888 Msa0967870:CDS
AAGGAAACTGAGCTCAGACT+AGG 0.575995 6_3:+97980672 Msa0967870:CDS
AAACTTCTGTAATAGGGCAC+AGG 0.579506 6_3:+97981493 Msa0967870:intron
TGGTGCTCCTTATCTCAGAA+AGG 0.583817 6_3:+97981640 Msa0967870:CDS
TTTCCCAGAAGACTCATCAA+TGG 0.587418 6_3:-97980856 None:intergenic
TGGTACAGAAAGTCCCAAGA+AGG 0.589577 6_3:+97980390 Msa0967870:five_prime_UTR
GTTTGTTCTCTCCAAGAGGA+GGG 0.594139 6_3:+97980916 Msa0967870:CDS
AAAGAACAATGATGAAGCTG+AGG 0.598000 6_3:+97981574 Msa0967870:CDS
GGTTTGTTCTCTCCAAGAGG+AGG 0.598726 6_3:+97980915 Msa0967870:CDS
GGATGTTCGCCGACTCGTGT+AGG 0.604960 6_3:+97982386 Msa0967870:intron
TGTATGTAGTAGCATAGGAG+AGG 0.607709 6_3:-97980444 None:intergenic
AATGATGGATCTGAAGGAGC+TGG 0.608371 6_3:+97980894 Msa0967870:CDS
CTAGCTACAAGGTTCTTCAA+AGG 0.626425 6_3:-97980804 None:intergenic
ATAGGGCACAGGTTGTGGGA+TGG 0.638025 6_3:+97981504 Msa0967870:intron
AAGAACAATGATGAAGCTGA+GGG 0.641734 6_3:+97981575 Msa0967870:CDS
GCTGGTTTGTTCTCTCCAAG+AGG 0.643608 6_3:+97980912 Msa0967870:CDS
CCTTAGTCTCCTACACGAGT+CGG 0.654169 6_3:-97982395 None:intergenic
AGGAGACTAAGGATCATGAA+AGG 0.655773 6_3:+97982406 Msa0967870:CDS
CTTGTAGGTGATGTTCCTTG+GGG 0.665765 6_3:+97982119 Msa0967870:CDS
TTGTAGGTGATGTTCCTTGG+GGG 0.698490 6_3:+97982120 Msa0967870:CDS
AAGGATCATGAAAGGCTCCG+AGG 0.730710 6_3:+97982414 Msa0967870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTGTTTTTTTAT+GGG + chr6_3:97981266-97981285 Msa0967870:intron 10.0%
!!! TATTTGATATTTTTTCATCT+AGG + chr6_3:97980561-97980580 Msa0967870:five_prime_UTR 15.0%
!!! GTTTTTTGTTTGTTTTTTTA+TGG + chr6_3:97981265-97981284 Msa0967870:intron 15.0%
!!! AAATTATTTACATGTGTTTT+AGG + chr6_3:97981817-97981836 Msa0967870:intron 15.0%
!!! GTTACATATATTTTTGATTT+TGG - chr6_3:97982849-97982868 None:intergenic 15.0%
!! AAAAGAAAGAGTAAAAAGTT+TGG + chr6_3:97980370-97980389 Msa0967870:five_prime_UTR 20.0%
!! AAAAAATCATGTCTATTCAA+GGG - chr6_3:97981312-97981331 None:intergenic 20.0%
!! AAAAAAATCATGTCTATTCA+AGG - chr6_3:97981313-97981332 None:intergenic 20.0%
!!! CACTATTTTTGAATTATACA+TGG - chr6_3:97981396-97981415 None:intergenic 20.0%
!! CATGTATAATTCAAAAATAG+TGG + chr6_3:97981394-97981413 Msa0967870:intron 20.0%
!! AATAGTGGTTAATGAATATT+TGG + chr6_3:97981409-97981428 Msa0967870:intron 20.0%
!! ATAGTGGTTAATGAATATTT+GGG + chr6_3:97981410-97981429 Msa0967870:intron 20.0%
!! GTGTGTAAAAAATCAAAATA+AGG - chr6_3:97981779-97981798 None:intergenic 20.0%
!!! ATTTTACAGCAAGTAAAAAA+AGG - chr6_3:97981801-97981820 None:intergenic 20.0%
!! TAAAATAAACAACAAAAGTC+TGG - chr6_3:97982540-97982559 None:intergenic 20.0%
!! ATATCTTGTAATCTTTGATA+TGG + chr6_3:97982633-97982652 Msa0967870:intron 20.0%
!! AAATATGTGTATATATTCTC+TGG - chr6_3:97982943-97982962 None:intergenic 20.0%
!! TTTGAACAATTTATGTAGTT+TGG + chr6_3:97983042-97983061 Msa0967870:three_prime_UTR 20.0%
! TTTAGCAAATAATCCATCAA+TGG + chr6_3:97980623-97980642 Msa0967870:CDS 25.0%
! TGTACATGAAAAGAATAAAC+AGG + chr6_3:97981037-97981056 Msa0967870:CDS 25.0%
! GAAAAGAATAAACAGGTTAA+TGG + chr6_3:97981044-97981063 Msa0967870:CDS 25.0%
! CAAAAAAAAGTAAACAGAAC+AGG - chr6_3:97981160-97981179 None:intergenic 25.0%
!!! ACATGATTTTTTTCTCTCTT+TGG + chr6_3:97981320-97981339 Msa0967870:intron 25.0%
! TTGTATCAAACTTCTGTAAT+AGG + chr6_3:97981486-97981505 Msa0967870:intron 25.0%
! TGTATCAAACTTCTGTAATA+GGG + chr6_3:97981487-97981506 Msa0967870:intron 25.0%
! TAAGGTAAGTAATTTGAAGA+AGG - chr6_3:97981753-97981772 None:intergenic 25.0%
! AAAATCAAAATAAGGAGCTA+AGG - chr6_3:97981771-97981790 None:intergenic 25.0%
! ATATTCGTATTCCTAAAATC+AGG + chr6_3:97981978-97981997 Msa0967870:intron 25.0%
! CTTACATATGAAGATAAAGA+TGG + chr6_3:97982086-97982105 Msa0967870:CDS 25.0%
!! ATTTCTTTTTATTCGCTGTT+TGG + chr6_3:97982149-97982168 Msa0967870:intron 25.0%
!!! AAGTTGACTTATTTTGTCTT+TGG - chr6_3:97982249-97982268 None:intergenic 25.0%
!! TTACACTCTAGATTTGTTTA+AGG + chr6_3:97982459-97982478 Msa0967870:CDS 25.0%
! ACAATCTAATAATTGTAGTG+CGG - chr6_3:97982611-97982630 None:intergenic 25.0%
! TCACTGATATGCATATATAA+AGG + chr6_3:97982792-97982811 Msa0967870:exon 25.0%
! TGCATATATAAAGGTTTACA+AGG + chr6_3:97982801-97982820 Msa0967870:three_prime_UTR 25.0%
! TTTAGTTAGTAGAATTCATC+TGG + chr6_3:97982909-97982928 Msa0967870:three_prime_UTR 25.0%
!! TGATTTTTATGTAGTGAAGA+TGG + chr6_3:97983088-97983107 Msa0967870:three_prime_UTR 25.0%
!! GATTTTTATGTAGTGAAGAT+GGG + chr6_3:97983089-97983108 Msa0967870:three_prime_UTR 25.0%
ATGTTCAAAAGAACCTTCTT+GGG - chr6_3:97980406-97980425 None:intergenic 30.0%
AATGTTCAAAAGAACCTTCT+TGG - chr6_3:97980407-97980426 None:intergenic 30.0%
TGATATGTATGTAGTAGCAT+AGG - chr6_3:97980452-97980471 None:intergenic 30.0%
CCTATGTAATCATGTTCTAA+TGG - chr6_3:97980603-97980622 None:intergenic 30.0%
CCATTAGAACATGATTACAT+AGG + chr6_3:97980600-97980619 Msa0967870:CDS 30.0%
AATGTTCTTCAAATCCTTGT+TGG - chr6_3:97980769-97980788 None:intergenic 30.0%
AATGTTGGAAAAACTCTTGT+TGG + chr6_3:97980939-97980958 Msa0967870:CDS 30.0%
TGCAACAAAAAACATCAAAG+AGG + chr6_3:97981001-97981020 Msa0967870:CDS 30.0%
! CTTTTGTTCATGTCATGTTT+TGG + chr6_3:97981186-97981205 Msa0967870:intron 30.0%
!!! ATTTGGGTTGTTTTCAGAAA+AGG + chr6_3:97981426-97981445 Msa0967870:intron 30.0%
TACAGAAGTTTGATACAATG+AGG - chr6_3:97981484-97981503 None:intergenic 30.0%
!!! TTTTTTCGAAACGATCGAAT+TGG - chr6_3:97981533-97981552 None:intergenic 30.0%
TCTCTATGTAAAAGTCAGTA+TGG + chr6_3:97981616-97981635 Msa0967870:CDS 30.0%
TATGTAAAAGTCAGTATGGA+TGG + chr6_3:97981620-97981639 Msa0967870:CDS 30.0%
AAGTTCCATATAGTTGTTGT+AGG - chr6_3:97981678-97981697 None:intergenic 30.0%
TATCTTATCTAGATCCTGTT+TGG + chr6_3:97981893-97981912 Msa0967870:intron 30.0%
AATTAACTGTGTAACCAAAC+AGG - chr6_3:97981910-97981929 None:intergenic 30.0%
!! AATTGCATTGACCTGATTTT+AGG - chr6_3:97981992-97982011 None:intergenic 30.0%
ATGAAGATAAAGATGGAGAT+TGG + chr6_3:97982093-97982112 Msa0967870:CDS 30.0%
CAGCTTAATTAAGCACTTAT+AGG + chr6_3:97982177-97982196 Msa0967870:intron 30.0%
!! GCTTCAATATGAAAGTGTTT+GGG - chr6_3:97982305-97982324 None:intergenic 30.0%
!! AGCTTCAATATGAAAGTGTT+TGG - chr6_3:97982306-97982325 None:intergenic 30.0%
! AATCGGCTTAACTAAATTGT+TGG + chr6_3:97982355-97982374 Msa0967870:intron 30.0%
CAATCTAATAATTGTAGTGC+GGG - chr6_3:97982610-97982629 None:intergenic 30.0%
TAATCTTTGATATGGATCAC+TGG + chr6_3:97982641-97982660 Msa0967870:intron 30.0%
!!! ATGGATCACTGGTTTTATAT+TGG + chr6_3:97982652-97982671 Msa0967870:intron 30.0%
! TACAAGGAAGTTTGAGTTTA+TGG + chr6_3:97982817-97982836 Msa0967870:three_prime_UTR 30.0%
TTTGTGGCTGTATAAAAGAA+TGG + chr6_3:97982995-97983014 Msa0967870:three_prime_UTR 30.0%
! TCGAATGATATTTTCGATTC+CGG - chr6_3:97983122-97983141 None:intergenic 30.0%
! GAAGATGTTTTGTCCATTGA+TGG - chr6_3:97980639-97980658 None:intergenic 35.0%
ATCTTCTTCTCTCAACTTCA+AGG + chr6_3:97980653-97980672 Msa0967870:CDS 35.0%
!! GTAGCAACTGATTTTCTATC+AGG - chr6_3:97980717-97980736 None:intergenic 35.0%
TGGAGTTTCTCTATGAATGA+TGG + chr6_3:97980879-97980898 Msa0967870:CDS 35.0%
!! TCTATGAATGATGGATCTGA+AGG + chr6_3:97980888-97980907 Msa0967870:CDS 35.0%
AAAGAAACATACTTTGCAGC+AGG - chr6_3:97981092-97981111 None:intergenic 35.0%
TGGTTACCTAGATTAGACAA+AGG + chr6_3:97981206-97981225 Msa0967870:intron 35.0%
CTTTCACCTTTGTCTAATCT+AGG - chr6_3:97981215-97981234 None:intergenic 35.0%
ATCGTTTCGAAAAAACACGA+TGG + chr6_3:97981538-97981557 Msa0967870:CDS 35.0%
AAAGAACAATGATGAAGCTG+AGG + chr6_3:97981574-97981593 Msa0967870:CDS 35.0%
AAGAACAATGATGAAGCTGA+GGG + chr6_3:97981575-97981594 Msa0967870:CDS 35.0%
!! AGATCAACCTTTCTGAGATA+AGG - chr6_3:97981650-97981669 None:intergenic 35.0%
CAAGACCTACAACAACTATA+TGG + chr6_3:97981670-97981689 Msa0967870:CDS 35.0%
GAAGGTAAAGTTAGTACCAA+TGG - chr6_3:97981735-97981754 None:intergenic 35.0%
TTACATGAGAAAGTCAAGCT+AGG - chr6_3:97981852-97981871 None:intergenic 35.0%
AAAGAAATAACTTACCCCCA+AGG - chr6_3:97982137-97982156 None:intergenic 35.0%
GTTAAATCGTGATAGTCCAA+TGG + chr6_3:97982329-97982348 Msa0967870:intron 35.0%
TGATAGTCCAATGGTTGAAT+CGG + chr6_3:97982338-97982357 Msa0967870:intron 35.0%
! ACTAAATTGTTGGTTGATGC+AGG + chr6_3:97982365-97982384 Msa0967870:intron 35.0%
!!! GAGTTTTTCTGGACTAGTTT+TGG - chr6_3:97982752-97982771 None:intergenic 35.0%
TATCAGTGAATTCTCCTCTT+TGG - chr6_3:97982781-97982800 None:intergenic 35.0%
TATACAGCCACAAACTTCAA+AGG - chr6_3:97982989-97983008 None:intergenic 35.0%
! CGAATGATATTTTCGATTCC+GGG - chr6_3:97983121-97983140 None:intergenic 35.0%
TGTATGTAGTAGCATAGGAG+AGG - chr6_3:97980447-97980466 None:intergenic 40.0%
AGTCTCTTTCTTTGCCAACA+AGG + chr6_3:97980752-97980771 Msa0967870:CDS 40.0%
CTAGCTACAAGGTTCTTCAA+AGG - chr6_3:97980807-97980826 None:intergenic 40.0%
AAGAACCTTGTAGCTAGTGT+TGG + chr6_3:97980810-97980829 Msa0967870:CDS 40.0%
ATGCCATTGATGAGTCTTCT+GGG + chr6_3:97980853-97980872 Msa0967870:CDS 40.0%
TTTCCCAGAAGACTCATCAA+TGG - chr6_3:97980859-97980878 None:intergenic 40.0%
! TTGATGAGTCTTCTGGGAAA+TGG + chr6_3:97980859-97980878 Msa0967870:CDS 40.0%
AAACTTCTGTAATAGGGCAC+AGG + chr6_3:97981493-97981512 Msa0967870:intron 40.0%
TTTCGAAACGATCGAATTGG+TGG - chr6_3:97981530-97981549 None:intergenic 40.0%
ACATAGAGACAGTCAAATCC+TGG - chr6_3:97981605-97981624 None:intergenic 40.0%
ATGTTCACCTGCTTTACCAT+TGG + chr6_3:97981716-97981735 Msa0967870:CDS 40.0%
GTTAGTACCAATGGTAAAGC+AGG - chr6_3:97981726-97981745 None:intergenic 40.0%
ACTAAGTGAGAGCTCTTTGA+GGG + chr6_3:97982037-97982056 Msa0967870:CDS 40.0%
! TCTTTGAGGGATCTTCTTCA+TGG + chr6_3:97982050-97982069 Msa0967870:CDS 40.0%
! AGTTAAGCCGATTCAACCAT+TGG - chr6_3:97982348-97982367 None:intergenic 40.0%
AGGAGACTAAGGATCATGAA+AGG + chr6_3:97982406-97982425 Msa0967870:CDS 40.0%
ACTAGTCCAGAAAAACTCGT+TGG + chr6_3:97982754-97982773 Msa0967870:CDS 40.0%
! TTTGGTCCAACGAGTTTTTC+TGG - chr6_3:97982763-97982782 None:intergenic 40.0%
AAAAACTCGTTGGACCAAAG+AGG + chr6_3:97982764-97982783 Msa0967870:CDS 40.0%
!! TTGTGCACCTTTGAAGTTTG+TGG + chr6_3:97982979-97982998 Msa0967870:three_prime_UTR 40.0%
TGGTACAGAAAGTCCCAAGA+AGG + chr6_3:97980390-97980409 Msa0967870:five_prime_UTR 45.0%
TAGTAGCATAGGAGAGGAGT+TGG - chr6_3:97980441-97980460 None:intergenic 45.0%
AAGGAAACTGAGCTCAGACT+AGG + chr6_3:97980672-97980691 Msa0967870:CDS 45.0%
CTATCAGGAGATTCACAACC+AGG - chr6_3:97980702-97980721 None:intergenic 45.0%
TAGCTCCAACACTAGCTACA+AGG - chr6_3:97980818-97980837 None:intergenic 45.0%
! GCTAGTGTTGGAGCTAAAAG+AGG + chr6_3:97980822-97980841 Msa0967870:CDS 45.0%
GATGCCATTGATGAGTCTTC+TGG + chr6_3:97980852-97980871 Msa0967870:CDS 45.0%
!! AATGATGGATCTGAAGGAGC+TGG + chr6_3:97980894-97980913 Msa0967870:CDS 45.0%
GTTTGTTCTCTCCAAGAGGA+GGG + chr6_3:97980916-97980935 Msa0967870:CDS 45.0%
TTTCCAACATTCCCTCCTCT+TGG - chr6_3:97980930-97980949 None:intergenic 45.0%
TGTAATAGGGCACAGGTTGT+GGG + chr6_3:97981500-97981519 Msa0967870:intron 45.0%
TGGTGCTCCTTATCTCAGAA+AGG + chr6_3:97981640-97981659 Msa0967870:CDS 45.0%
TCAGGTCAATGCAATTCTCC+TGG + chr6_3:97981996-97982015 Msa0967870:intron 45.0%
TCACTTAGTCCATCTTTCCC+AGG - chr6_3:97982026-97982045 None:intergenic 45.0%
GACTAAGTGAGAGCTCTTTG+AGG + chr6_3:97982036-97982055 Msa0967870:CDS 45.0%
GATGGAGATTGGATGCTTGT+AGG + chr6_3:97982104-97982123 Msa0967870:CDS 45.0%
TGCTTGTAGGTGATGTTCCT+TGG + chr6_3:97982117-97982136 Msa0967870:CDS 45.0%
GCTTGTAGGTGATGTTCCTT+GGG + chr6_3:97982118-97982137 Msa0967870:CDS 45.0%
CTTGTAGGTGATGTTCCTTG+GGG + chr6_3:97982119-97982138 Msa0967870:CDS 45.0%
TTGTAGGTGATGTTCCTTGG+GGG + chr6_3:97982120-97982139 Msa0967870:CDS 45.0%
! CTAGATTTTCCCATGGCTCT+TGG - chr6_3:97982726-97982745 None:intergenic 45.0%
CAAGAGCCATGGGAAAATCT+AGG + chr6_3:97982724-97982743 Msa0967870:CDS 45.0%
! TTGGCTCCTAGATTTTCCCA+TGG - chr6_3:97982733-97982752 None:intergenic 45.0%
!! GCTGGTTTGTTCTCTCCAAG+AGG + chr6_3:97980912-97980931 Msa0967870:CDS 50.0%
! GGTTTGTTCTCTCCAAGAGG+AGG + chr6_3:97980915-97980934 Msa0967870:CDS 50.0%
TCTCCAAGAGGAGGGAATGT+TGG + chr6_3:97980924-97980943 Msa0967870:CDS 50.0%
CTGTAATAGGGCACAGGTTG+TGG + chr6_3:97981499-97981518 Msa0967870:intron 50.0%
GATGAAGCTGAGGGAAAACC+AGG + chr6_3:97981584-97981603 Msa0967870:CDS 50.0%
TGCAATTCTCCTGGACTTCC+TGG + chr6_3:97982005-97982024 Msa0967870:CDS 50.0%
GCAATTCTCCTGGACTTCCT+GGG + chr6_3:97982006-97982025 Msa0967870:CDS 50.0%
CCTTAGTCTCCTACACGAGT+CGG - chr6_3:97982398-97982417 None:intergenic 50.0%
AAGGATCATGAAAGGCTCCG+AGG + chr6_3:97982414-97982433 Msa0967870:CDS 50.0%
ATGAAAGGCTCCGAGGCAAT+TGG + chr6_3:97982421-97982440 Msa0967870:CDS 50.0%
TGAAAGGCTCCGAGGCAATT+GGG + chr6_3:97982422-97982441 Msa0967870:CDS 50.0%
CATACCTAGCCCAATTGCCT+CGG - chr6_3:97982434-97982453 None:intergenic 50.0%
TTTGCAGCTCCAAGAGCCAT+GGG + chr6_3:97982714-97982733 Msa0967870:intron 50.0%
AGCATAGGAGAGGAGTTGGC+TGG - chr6_3:97980437-97980456 None:intergenic 55.0%
GAGCTCAGACTAGGCTTACC+TGG + chr6_3:97980681-97980700 Msa0967870:CDS 55.0%
TCAGTTGCTACTGCTGCTGC+TGG + chr6_3:97980726-97980745 Msa0967870:CDS 55.0%
ATAGGGCACAGGTTGTGGGA+TGG + chr6_3:97981504-97981523 Msa0967870:intron 55.0%
CCATCTTTCCCAGGAAGTCC+AGG - chr6_3:97982017-97982036 None:intergenic 55.0%
CCTGGACTTCCTGGGAAAGA+TGG + chr6_3:97982014-97982033 Msa0967870:CDS 55.0%
! CCGACTCGTGTAGGAGACTA+AGG + chr6_3:97982395-97982414 Msa0967870:CDS 55.0%
GTTTGCAGCTCCAAGAGCCA+TGG + chr6_3:97982713-97982732 Msa0967870:intron 55.0%
GTTGCTACTGCTGCTGCTGG+TGG + chr6_3:97980729-97980748 Msa0967870:CDS 60.0%
!! GGATGTTCGCCGACTCGTGT+AGG + chr6_3:97982386-97982405 Msa0967870:intron 60.0%
AGTGAAGATGGGACGCTGCC+CGG + chr6_3:97983100-97983119 Msa0967870:three_prime_UTR 60.0%
GGCTCCGAGGCAATTGGGCT+AGG + chr6_3:97982427-97982446 Msa0967870:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 97980370 97983179 97980370 ID=Msa0967870;Name=Msa0967870
chr6_3 mRNA 97980370 97983179 97980370 ID=Msa0967870-mRNA-1;Parent=Msa0967870;Name=Msa0967870-mRNA-1;_AED=0.04;_eAED=0.04;_QI=221|0.75|0.8|1|1|1|5|381|351
chr6_3 exon 97980370 97981099 97980370 ID=Msa0967870-mRNA-1:exon:18258;Parent=Msa0967870-mRNA-1
chr6_3 exon 97981508 97981737 97981508 ID=Msa0967870-mRNA-1:exon:18259;Parent=Msa0967870-mRNA-1
chr6_3 exon 97982000 97982141 97982000 ID=Msa0967870-mRNA-1:exon:18260;Parent=Msa0967870-mRNA-1
chr6_3 exon 97982387 97982483 97982387 ID=Msa0967870-mRNA-1:exon:18261;Parent=Msa0967870-mRNA-1
chr6_3 exon 97982721 97983179 97982721 ID=Msa0967870-mRNA-1:exon:18262;Parent=Msa0967870-mRNA-1
chr6_3 five_prime_UTR 97980370 97980590 97980370 ID=Msa0967870-mRNA-1:five_prime_utr;Parent=Msa0967870-mRNA-1
chr6_3 CDS 97980591 97981099 97980591 ID=Msa0967870-mRNA-1:cds;Parent=Msa0967870-mRNA-1
chr6_3 CDS 97981508 97981737 97981508 ID=Msa0967870-mRNA-1:cds;Parent=Msa0967870-mRNA-1
chr6_3 CDS 97982000 97982141 97982000 ID=Msa0967870-mRNA-1:cds;Parent=Msa0967870-mRNA-1
chr6_3 CDS 97982387 97982483 97982387 ID=Msa0967870-mRNA-1:cds;Parent=Msa0967870-mRNA-1
chr6_3 CDS 97982721 97982798 97982721 ID=Msa0967870-mRNA-1:cds;Parent=Msa0967870-mRNA-1
chr6_3 three_prime_UTR 97982799 97983179 97982799 ID=Msa0967870-mRNA-1:three_prime_utr;Parent=Msa0967870-mRNA-1
Gene Sequence

>Msa0967870

ATGTCTACACCATTAGAACATGATTACATAGGTTTAGCAAATAATCCATCAATGGACAAAACATCTTCTTCTCTCAACTTCAAGGAAACTGAGCTCAGACTAGGCTTACCTGGTTGTGAATCTCCTGATAGAAAATCAGTTGCTACTGCTGCTGCTGGTGGAGTCTCTTTCTTTGCCAACAAGGATTTGAAGAACATTAATGTTTGTTCTTCTCCTTTGAAGAACCTTGTAGCTAGTGTTGGAGCTAAAAGAGGTTTCTCTGATGCCATTGATGAGTCTTCTGGGAAATGGAGTTTCTCTATGAATGATGGATCTGAAGGAGCTGGTTTGTTCTCTCCAAGAGGAGGGAATGTTGGAAAAACTCTTGTTGGTTTAGAGACTCAAACTAATATTCAGAAGATTAATACAAATGCAACAAAAAACATCAAAGAGGTTCTTCATCAATCTGTACATGAAAAGAATAAACAGGTTAATGGAACAAATGAGCATGCTAATGCTCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCGTTTCGAAAAAACACGATGGCATCTAATTTGTCAAAGAACAATGATGAAGCTGAGGGAAAACCAGGATTTGACTGTCTCTATGTAAAAGTCAGTATGGATGGTGCTCCTTATCTCAGAAAGGTTGATCTCAAGACCTACAACAACTATATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCACCTGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTAGGTGATGTTCCTTGGGGGATGTTCGCCGACTCGTGTAGGAGACTAAGGATCATGAAAGGCTCCGAGGCAATTGGGCTAGGTATGAAAGTTTACACTCTAGATTTGTTTAAGGAACTCCAAGAGCCATGGGAAAATCTAGGAGCCAAAACTAGTCCAGAAAAACTCGTTGGACCAAAGAGGAGAATTCACTGA

Protein sequence

>Msa0967870

MSTPLEHDYIGLANNPSMDKTSSSLNFKETELRLGLPGCESPDRKSVATAAAGGVSFFANKDLKNINVCSSPLKNLVASVGAKRGFSDAIDESSGKWSFSMNDGSEGAGLFSPRGGNVGKTLVGLETQTNIQKINTNATKNIKEVLHQSVHEKNKQVNGTNEHANAPAAKAQVVGWPPIRSFRKNTMASNLSKNNDEAEGKPGFDCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFADSCRRLRIMKGSEAIGLGMKVYTLDLFKELQEPWENLGAKTSPEKLVGPKRRIH*