AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0798000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798000 MtrunA17_Chr5g0402271 99.419 172 1 0 1 172 1 172 1.64e-124 347
Msa0798000 MtrunA17_Chr1g0190591 48.718 117 44 4 61 172 80 185 4.04e-24 93.2
Msa0798000 MtrunA17_Chr4g0044791 52.747 91 33 3 27 110 12 99 2.01e-23 90.1
Msa0798000 MtrunA17_Chr7g0274251 42.500 120 50 4 61 172 77 185 2.00e-19 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798000 AT4G33985.1 52.381 147 54 4 29 171 14 148 1.91e-39 131
Msa0798000 AT3G50350.2 53.147 143 52 4 33 172 38 168 1.02e-37 127
Msa0798000 AT2G15590.2 46.358 151 58 6 29 172 11 145 7.54e-33 115
Msa0798000 AT3G50350.1 57.273 110 36 5 7 111 18 121 1.09e-28 105
Msa0798000 AT2G15590.1 55.056 89 28 4 29 110 11 94 6.79e-24 91.3
Msa0798000 AT1G08790.1 40.559 143 66 5 42 172 53 188 1.84e-19 81.3
Msa0798000 AT3G04700.1 39.456 147 69 3 42 172 48 190 2.48e-19 81.3
Msa0798000 AT2G31560.2 39.316 117 57 4 57 170 94 199 4.53e-17 75.5
Msa0798000 AT2G31560.1 39.316 117 57 4 57 170 94 199 4.53e-17 75.5
Msa0798000 AT2G31560.3 39.316 117 57 4 57 170 94 199 4.53e-17 75.5
Msa0798000 AT5G28690.1 38.255 149 68 5 42 172 49 191 5.71e-17 75.1
Msa0798000 AT5G28690.3 38.255 149 68 5 42 172 49 191 5.71e-17 75.1
Msa0798000 AT5G28690.2 38.255 149 68 5 42 172 49 191 5.71e-17 75.1
Msa0798000 AT1G05870.4 38.983 118 57 4 57 170 80 186 7.63e-17 74.7
Msa0798000 AT1G05870.12 38.983 118 57 4 57 170 80 186 7.63e-17 74.7
Msa0798000 AT1G05870.8 38.983 118 57 4 57 170 80 186 7.63e-17 74.7
Msa0798000 AT1G05870.1 38.983 118 57 4 57 170 80 186 7.63e-17 74.7
Msa0798000 AT1G05870.7 38.983 118 57 4 57 170 80 186 7.63e-17 74.7
Msa0798000 AT1G05870.2 38.983 118 57 4 57 170 80 186 7.63e-17 74.7
Msa0798000 AT1G05870.10 38.983 118 57 4 57 170 80 186 7.63e-17 74.7
Msa0798000 AT1G05870.5 38.983 118 57 4 57 170 80 186 7.63e-17 74.7
Msa0798000 AT1G05870.9 38.983 118 57 4 57 170 80 186 7.63e-17 74.7
Msa0798000 AT1G05870.3 38.983 118 57 4 57 170 80 186 7.63e-17 74.7
Msa0798000 AT1G05870.6 38.983 118 57 4 57 170 80 186 7.63e-17 74.7
Msa0798000 AT1G05870.11 38.983 118 57 4 57 170 80 186 7.63e-17 74.7
Msa0798000 AT2G15610.1 45.349 86 42 3 29 110 12 96 8.09e-17 73.6
Msa0798000 AT3G04710.3 34.595 185 100 4 1 169 8 187 1.22e-16 77.0
Msa0798000 AT2G43340.1 40.171 117 58 4 56 170 80 186 1.90e-16 73.6

Find 129 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGAGTGCAAAGATTTA+AGG 0.183003 5_3:-10463328 None:intergenic
ATTGTTAATCATTTAAAATT+TGG 0.201566 5_3:+10464584 Msa0798000:three_prime_UTR
ATTGTTAATCATTTAAAATT+TGG 0.201566 5_3:-10464955 None:intergenic
CTCAAAGCTTGCATTGAATT+AGG 0.228374 5_3:+10463674 Msa0798000:CDS
GGAAGACGCTATGGCTTATT+AGG 0.235569 5_3:-10463402 None:intergenic
AAATTAGCCCAGGGGTATTT+TGG 0.240384 5_3:+10464871 Msa0798000:three_prime_UTR
GTAGTAACGGCGGCGGATTT+AGG 0.271292 5_3:-10463809 None:intergenic
GTTATTATTGATAGGCTTAA+TGG 0.293719 5_3:+10464484 Msa0798000:three_prime_UTR
GCTTGCATTGAATTAGGTTT+TGG 0.295486 5_3:+10463680 Msa0798000:CDS
AACCTTGTCTTCACCGTTTG+TGG 0.303740 5_3:-10464187 None:intergenic
TTTAAATGATTAACAATTGC+AGG 0.307226 5_3:-10464578 None:intergenic
TTTAAATGATTAACAATTGC+AGG 0.307226 5_3:+10464961 Msa0798000:three_prime_UTR
CTTTAGGTACCAAAACAATC+TGG 0.316908 5_3:-10464453 None:intergenic
ATAATAACATCAACTACTTT+AGG 0.332767 5_3:-10464469 None:intergenic
ATGCCAGGATTAACGATTAC+AGG 0.344916 5_3:-10464549 None:intergenic
TTTAAACGCCGCCTATTTGC+AGG 0.349522 5_3:-10464518 None:intergenic
TAGTAACGGCGGCGGATTTA+GGG 0.354317 5_3:-10463808 None:intergenic
TTTAAACGCCGCCTATTTGC+AGG 0.356339 5_3:+10465021 Msa0798000:three_prime_UTR
TAACCAAACCCAGATTGTTT+TGG 0.374396 5_3:+10464444 Msa0798000:three_prime_UTR
ATGATTATGCATGATGATTC+TGG 0.374745 5_3:+10464256 Msa0798000:three_prime_UTR
AGCCCTCGCACCGCCATCTT+CGG 0.378249 5_3:+10463884 Msa0798000:CDS
CGACGATCAGTTTCAACTTC+GGG 0.385163 5_3:-10463716 None:intergenic
ATGCCAGGATTAGCGATTAC+AGG 0.403878 5_3:+10464990 Msa0798000:three_prime_UTR
TGTCTTTAGTCCCTGCAAAT+AGG 0.408384 5_3:-10465032 None:intergenic
TAGTTGATGTTATTATTGAT+AGG 0.411949 5_3:+10464476 Msa0798000:three_prime_UTR
GGCTCGTGGCCGGTTCTGTT+TGG 0.413415 5_3:-10464414 None:intergenic
GTACCAAAACAATCTGGGTT+TGG 0.415014 5_3:-10464447 None:intergenic
GGGGATTATTGATGATTAAC+CGG 0.415499 5_3:+10464306 Msa0798000:three_prime_UTR
ATAAAAGTTATAATGATTCT+CGG 0.416427 5_3:+10463783 Msa0798000:CDS
AATATTACCGTTGCCGAAGA+TGG 0.416533 5_3:-10463897 None:intergenic
TGTGTTTCGCCCCTGCAAAT+AGG 0.416953 5_3:+10464507 Msa0798000:three_prime_UTR
GGTGGAGATGGCGGCGCGTA+GGG 0.419051 5_3:-10463479 None:intergenic
CTACACAATGAATACCAAAA+AGG 0.420369 5_3:-10465285 None:intergenic
GGCTTCGTCGTAAAGGAAAC+TGG 0.420518 5_3:+10463606 Msa0798000:CDS
AGAAAGGAAGGTGGTGGAGA+TGG 0.426640 5_3:-10463491 None:intergenic
CAGCAAGTAACATATCAATA+AGG 0.430485 5_3:-10465063 None:intergenic
TCTGGGTTTGGTTAAACTAA+AGG 0.430998 5_3:-10464435 None:intergenic
AGAAGAGTGCAAAGATTTAA+GGG 0.444563 5_3:-10463327 None:intergenic
ATTGTAACTTGTAACTTGTA+TGG 0.445013 5_3:-10464359 None:intergenic
TGGTGGAGATGGCGGCGCGT+AGG 0.463791 5_3:-10463480 None:intergenic
GCAATGATGATGAGCATGAA+TGG 0.476446 5_3:+10464284 Msa0798000:three_prime_UTR
TTGCCGAAGATGGCGGTGCG+AGG 0.483550 5_3:-10463887 None:intergenic
TGGAAGAGAAAGGAAGGTGG+TGG 0.489175 5_3:-10463497 None:intergenic
GCGTTGTTGTGCGGAGGTCG+AGG 0.489529 5_3:-10463443 None:intergenic
ATCTTTACCGTGACGAAGCG+TGG 0.490402 5_3:+10463585 Msa0798000:CDS
CGAGGGCTGCCACGAGGAGA+AGG 0.497711 5_3:-10463869 None:intergenic
GTTAAATTAATAACCATGGT+TGG 0.498910 5_3:-10464337 None:intergenic
TTTAGGTACCAAAACAATCT+GGG 0.503636 5_3:-10464452 None:intergenic
GAAGCGTGGCTTCGTCGTAA+AGG 0.505096 5_3:+10463599 Msa0798000:CDS
GTAAAGGAAACTGGAAGAAT+CGG 0.510681 5_3:+10463615 Msa0798000:CDS
CAATGATGATGAGCATGAAT+GGG 0.514334 5_3:+10464285 Msa0798000:three_prime_UTR
GATTTAAGGGTGTGTTGAGG+TGG 0.520619 5_3:-10463314 None:intergenic
GCCATCACGATCGGAGGCTG+CGG 0.520742 5_3:-10463843 None:intergenic
TCACTGCCACGTCACCAGAT+TGG 0.521962 5_3:-10464915 None:intergenic
AGGGACCTCGCACGGTGCGT+TGG 0.523223 5_3:-10463423 None:intergenic
TGCCGAAGATGGCGGTGCGA+GGG 0.523267 5_3:-10463886 None:intergenic
TTAAATGATTAACAATTGCA+GGG 0.523853 5_3:-10464577 None:intergenic
TTAAATGATTAACAATTGCA+GGG 0.523853 5_3:+10464962 Msa0798000:three_prime_UTR
GTCCCTGTAATCGCTAATCC+TGG 0.525359 5_3:-10464993 None:intergenic
GCTTCGTCACGGTAAAGATC+AGG 0.527383 5_3:-10463581 None:intergenic
TTTGCTAATCTGGTGACGTA+AGG 0.528048 5_3:-10464608 None:intergenic
CTCTCCTCAAGCAGCGATCG+TGG 0.533172 5_3:+10463555 Msa0798000:CDS
ATTTCACTACCAAACAGAAC+CGG 0.537637 5_3:+10464405 Msa0798000:three_prime_UTR
TGGTGGACGGTGGAAGAGAA+AGG 0.537926 5_3:-10463507 None:intergenic
ATCACGATCGGAGGCTGCGG+AGG 0.538111 5_3:-10463840 None:intergenic
GTCCCTGTAATCGTTAATCC+TGG 0.539198 5_3:+10464546 Msa0798000:three_prime_UTR
GGAATTGACCAAAATACCCC+TGG 0.539486 5_3:-10464879 None:intergenic
GCATGATAAAGTTCAAGAGC+AGG 0.542994 5_3:-10463755 None:intergenic
ATTGATATGTTACTTGCTGT+CGG 0.545245 5_3:+10465067 Msa0798000:three_prime_UTR
TGGTATTCATTGTGTAGGTG+TGG 0.545424 5_3:+10465291 Msa0798000:three_prime_UTR
CGGTGCGTTGGAAGACGCTA+TGG 0.546409 5_3:-10463411 None:intergenic
AATTGCAGGGGTAAAATGCC+AGG 0.548437 5_3:-10464564 None:intergenic
AATTGCAGGGGTAAAATGCC+AGG 0.548437 5_3:+10464975 Msa0798000:three_prime_UTR
ACGACGATCAGTTTCAACTT+CGG 0.557808 5_3:-10463717 None:intergenic
TTAAACGCCGCCTATTTGCA+GGG 0.558539 5_3:-10464517 None:intergenic
TATGGTTAAATTAATAACCA+TGG 0.559289 5_3:-10464341 None:intergenic
AGAAGGAGTGCCATCACGAT+CGG 0.561060 5_3:-10463852 None:intergenic
GTCTTCCAACGCACCGTGCG+AGG 0.563962 5_3:+10463418 Msa0798000:five_prime_UTR
TCGGAGGCTGCGGAGGAAGA+CGG 0.564577 5_3:-10463833 None:intergenic
GGACGGTGGAAGAGAAAGGA+AGG 0.564692 5_3:-10463503 None:intergenic
AATTCTTGCCTTAGCAGTGG+TGG 0.566176 5_3:-10463524 None:intergenic
CGCACCGCCATCTTCGGCAA+CGG 0.567388 5_3:+10463890 Msa0798000:CDS
TTAAACTAAAGGCTCGTGGC+CGG 0.568803 5_3:-10464424 None:intergenic
GGCACAGGTTGTTGCTTGTG+CGG 0.568971 5_3:+10464219 Msa0798000:CDS
TTAAACGCCGCCTATTTGCA+GGG 0.569196 5_3:+10465022 Msa0798000:three_prime_UTR
ATGCATGATGATTCTGGTGA+TGG 0.576855 5_3:+10464262 Msa0798000:three_prime_UTR
AAGGTTGAGACAGTGGGCAC+AGG 0.577432 5_3:+10464204 Msa0798000:CDS
TGAAGATGATGATCCACAAA+CGG 0.579168 5_3:+10464174 Msa0798000:intron
CGTTGTTGTGCGGAGGTCGA+GGG 0.580667 5_3:-10463442 None:intergenic
TCCACCGTCCACCACTGCTA+AGG 0.580926 5_3:+10463516 Msa0798000:CDS
GTTGAGGTGGTAGATCAAGT+TGG 0.581589 5_3:-10463301 None:intergenic
CGGTGGAAGAGAAAGGAAGG+TGG 0.588878 5_3:-10463500 None:intergenic
CACGATCGCTGCTTGAGGAG+AGG 0.590516 5_3:-10463554 None:intergenic
AAGGAAGGTGGTGGAGATGG+CGG 0.597909 5_3:-10463488 None:intergenic
TGCCAGGATTAGCGATTACA+GGG 0.599415 5_3:+10464991 Msa0798000:three_prime_UTR
ATCCACAAACGGTGAAGACA+AGG 0.599536 5_3:+10464185 Msa0798000:CDS
CTTGCCTTAGCAGTGGTGGA+CGG 0.601893 5_3:-10463520 None:intergenic
GGAGGAAGACGGTGTAGTAA+CGG 0.604938 5_3:-10463822 None:intergenic
GGAGGTCGAGGGACCTCGCA+CGG 0.605935 5_3:-10463431 None:intergenic
ATTACCGTTGCCGAAGATGG+CGG 0.608342 5_3:-10463894 None:intergenic
TCCGCAGCCTCCGATCGTGA+TGG 0.608934 5_3:+10463842 Msa0798000:CDS
GCAGTGATTAAGTTGGTCAA+AGG 0.611450 5_3:+10464931 Msa0798000:three_prime_UTR
GACGAAGCCACGCTTCGTCA+CGG 0.613832 5_3:-10463592 None:intergenic
ATCGGAGCGTTGTTGTGCGG+AGG 0.613915 5_3:-10463449 None:intergenic
GCGACCACGATCGCTGCTTG+AGG 0.614305 5_3:-10463559 None:intergenic
GACATCGGAGCGTTGTTGTG+CGG 0.617234 5_3:-10463452 None:intergenic
GCCTTAGCAGTGGTGGACGG+TGG 0.621956 5_3:-10463517 None:intergenic
TAAATGATTAACAATTGCAG+GGG 0.623848 5_3:-10464576 None:intergenic
TAAATGATTAACAATTGCAG+GGG 0.623848 5_3:+10464963 Msa0798000:three_prime_UTR
TGAAGACAAGGTTGAGACAG+TGG 0.625033 5_3:+10464197 Msa0798000:CDS
GAGAATTCTTGCCTTAGCAG+TGG 0.625843 5_3:-10463527 None:intergenic
AGACGGTGTAGTAACGGCGG+CGG 0.627507 5_3:-10463816 None:intergenic
TTGGTTAAACTAAAGGCTCG+TGG 0.638119 5_3:-10464428 None:intergenic
TAAACGCCGCCTATTTGCAG+GGG 0.643667 5_3:-10464516 None:intergenic
GTTTCGCCCCTGCAAATAGG+CGG 0.644886 5_3:+10464510 Msa0798000:three_prime_UTR
GGCGCGTAGGGATCAGACAT+CGG 0.645725 5_3:-10463467 None:intergenic
TGACGTGGCAGTGATTAAGT+TGG 0.645820 5_3:+10464924 Msa0798000:three_prime_UTR
GATGGCACTCCTTCTCCTCG+TGG 0.649473 5_3:+10463860 Msa0798000:CDS
TGCCAGGATTAACGATTACA+GGG 0.650259 5_3:-10464548 None:intergenic
GAAGACAAGGTTGAGACAGT+GGG 0.660668 5_3:+10464198 Msa0798000:CDS
AATGATGATGAGCATGAATG+GGG 0.660943 5_3:+10464286 Msa0798000:three_prime_UTR
CTTTAGTCCCTGCAAATAGG+CGG 0.661340 5_3:-10465029 None:intergenic
GAATTGACCAAAATACCCCT+GGG 0.663414 5_3:-10464878 None:intergenic
AGGAGTGCCATCACGATCGG+AGG 0.666999 5_3:-10463849 None:intergenic
TATTGTCTAAAATGTGACTG+TGG 0.705865 5_3:+10465118 Msa0798000:three_prime_UTR
GGAAGACGGTGTAGTAACGG+CGG 0.724547 5_3:-10463819 None:intergenic
AAAGATTTAAGGGTGTGTTG+AGG 0.732717 5_3:-10463317 None:intergenic
GCGGTGCGAGGGCTGCCACG+AGG 0.734065 5_3:-10463875 None:intergenic
ATGATGATGAGCATGAATGG+GGG 0.734195 5_3:+10464287 Msa0798000:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTTAATCATTTAAAATT+TGG + chr5_3:10464584-10464603 Msa0798000:three_prime_UTR 10.0%
!!! AAAACTGAATTTTTTTTTTA+AGG - chr5_3:10464689-10464708 None:intergenic 10.0%
!! AAAAAATCGTAAAAAAAATT+CGG - chr5_3:10464715-10464734 None:intergenic 10.0%
!!! AATTAAAACTGAAAAATTTT+CGG - chr5_3:10464739-10464758 None:intergenic 10.0%
!! TTAAAAGTCAAAAAAAATTT+CGG - chr5_3:10464776-10464795 None:intergenic 10.0%
!! TTGAAAAAAAAAAAATTTGA+AGG + chr5_3:10464841-10464860 Msa0798000:three_prime_UTR 10.0%
!!! ATTGTTAATCATTTAAAATT+TGG - chr5_3:10464584-10464603 None:intergenic 10.0%
!!! ATTGTTAATCATTTAAAATT+TGG + chr5_3:10464584-10464603 Msa0798000:three_prime_UTR 10.0%
!!! AAAACTGAATTTTTTTTTTA+AGG - chr5_3:10464689-10464708 None:intergenic 10.0%
!! AAAAAATCGTAAAAAAAATT+CGG - chr5_3:10464715-10464734 None:intergenic 10.0%
!!! AATTAAAACTGAAAAATTTT+CGG - chr5_3:10464739-10464758 None:intergenic 10.0%
!! TTAAAAGTCAAAAAAAATTT+CGG - chr5_3:10464776-10464795 None:intergenic 10.0%
!! TTGAAAAAAAAAAAATTTGA+AGG + chr5_3:10464841-10464860 Msa0798000:three_prime_UTR 10.0%
!!! ATTGTTAATCATTTAAAATT+TGG - chr5_3:10464584-10464603 None:intergenic 10.0%
!! AAAGAGAAAAAAAAAAAAAC+AGG + chr5_3:10463239-10463258 Msa0798000:five_prime_UTR 15.0%
!! ATAAAAGTTATAATGATTCT+CGG + chr5_3:10463783-10463802 Msa0798000:CDS 15.0%
!! AAACAAAAAAAAATAAGTCA+GGG - chr5_3:10464660-10464679 None:intergenic 15.0%
!! AAAACAAAAAAAAATAAGTC+AGG - chr5_3:10464661-10464680 None:intergenic 15.0%
!! AAAAATCGTAAAAAAAATTC+GGG - chr5_3:10464714-10464733 None:intergenic 15.0%
!!! ATTAAAACTGAAAAATTTTC+GGG - chr5_3:10464738-10464757 None:intergenic 15.0%
!! AAAGAGAAAAAAAAAAAAAC+AGG + chr5_3:10463239-10463258 Msa0798000:five_prime_UTR 15.0%
!! ATAAAAGTTATAATGATTCT+CGG + chr5_3:10463783-10463802 Msa0798000:CDS 15.0%
!! AAACAAAAAAAAATAAGTCA+GGG - chr5_3:10464660-10464679 None:intergenic 15.0%
!! AAAACAAAAAAAAATAAGTC+AGG - chr5_3:10464661-10464680 None:intergenic 15.0%
!! AAAAATCGTAAAAAAAATTC+GGG - chr5_3:10464714-10464733 None:intergenic 15.0%
!!! ATTAAAACTGAAAAATTTTC+GGG - chr5_3:10464738-10464757 None:intergenic 15.0%
!!! TTTTTGTTTTGTTTTGGATT+CGG - chr5_3:10463371-10463390 None:intergenic 20.0%
!!! TTGGTTTTTTTGTTTTGTTT+TGG - chr5_3:10463377-10463396 None:intergenic 20.0%
!! TCATATTGAATTAAGATCTA+TGG + chr5_3:10464086-10464105 Msa0798000:intron 20.0%
!! TATGGTTAAATTAATAACCA+TGG - chr5_3:10464344-10464363 None:intergenic 20.0%
!! ATAATAACATCAACTACTTT+AGG - chr5_3:10464472-10464491 None:intergenic 20.0%
!!! TAGTTGATGTTATTATTGAT+AGG + chr5_3:10464476-10464495 Msa0798000:three_prime_UTR 20.0%
!! TTAAATGATTAACAATTGCA+GGG - chr5_3:10464962-10464981 None:intergenic 20.0%
!! TTTAAATGATTAACAATTGC+AGG - chr5_3:10464961-10464980 None:intergenic 20.0%
!! AACAAAAAAAAATAAGTCAG+GGG - chr5_3:10464659-10464678 None:intergenic 20.0%
!! TTTAAATGATTAACAATTGC+AGG + chr5_3:10464961-10464980 Msa0798000:three_prime_UTR 20.0%
!! TTAAATGATTAACAATTGCA+GGG + chr5_3:10464962-10464981 Msa0798000:three_prime_UTR 20.0%
!!! TTTTTGTTTTGTTTTGGATT+CGG - chr5_3:10463371-10463390 None:intergenic 20.0%
!!! TTGGTTTTTTTGTTTTGTTT+TGG - chr5_3:10463377-10463396 None:intergenic 20.0%
!! TCATATTGAATTAAGATCTA+TGG + chr5_3:10464086-10464105 Msa0798000:intron 20.0%
!! TATGGTTAAATTAATAACCA+TGG - chr5_3:10464344-10464363 None:intergenic 20.0%
!! ATAATAACATCAACTACTTT+AGG - chr5_3:10464472-10464491 None:intergenic 20.0%
!!! TAGTTGATGTTATTATTGAT+AGG + chr5_3:10464476-10464495 Msa0798000:three_prime_UTR 20.0%
!! TTAAATGATTAACAATTGCA+GGG - chr5_3:10464962-10464981 None:intergenic 20.0%
!! TTTAAATGATTAACAATTGC+AGG - chr5_3:10464961-10464980 None:intergenic 20.0%
!! AACAAAAAAAAATAAGTCAG+GGG - chr5_3:10464659-10464678 None:intergenic 20.0%
!! TTTAAATGATTAACAATTGC+AGG + chr5_3:10464961-10464980 Msa0798000:three_prime_UTR 20.0%
!! TTAAATGATTAACAATTGCA+GGG + chr5_3:10464962-10464981 Msa0798000:three_prime_UTR 20.0%
!!! TATGGCTTATTAGGTTTTTT+TGG - chr5_3:10463396-10463415 None:intergenic 25.0%
!! GTATTCTAAGAGTAATTAAG+AGG - chr5_3:10463990-10464009 None:intergenic 25.0%
! GTTAAATTAATAACCATGGT+TGG - chr5_3:10464340-10464359 None:intergenic 25.0%
!! ATTGTAACTTGTAACTTGTA+TGG - chr5_3:10464362-10464381 None:intergenic 25.0%
! GTTATTATTGATAGGCTTAA+TGG + chr5_3:10464484-10464503 Msa0798000:three_prime_UTR 25.0%
! TAAATGATTAACAATTGCAG+GGG - chr5_3:10464963-10464982 None:intergenic 25.0%
! TAAATGATTAACAATTGCAG+GGG + chr5_3:10464963-10464982 Msa0798000:three_prime_UTR 25.0%
! TTAAAAATGTTACTACTACG+TGG + chr5_3:10465243-10465262 Msa0798000:three_prime_UTR 25.0%
!!! TATGGCTTATTAGGTTTTTT+TGG - chr5_3:10463396-10463415 None:intergenic 25.0%
!! GTATTCTAAGAGTAATTAAG+AGG - chr5_3:10463990-10464009 None:intergenic 25.0%
! GTTAAATTAATAACCATGGT+TGG - chr5_3:10464340-10464359 None:intergenic 25.0%
!! ATTGTAACTTGTAACTTGTA+TGG - chr5_3:10464362-10464381 None:intergenic 25.0%
! GTTATTATTGATAGGCTTAA+TGG + chr5_3:10464484-10464503 Msa0798000:three_prime_UTR 25.0%
! TAAATGATTAACAATTGCAG+GGG - chr5_3:10464963-10464982 None:intergenic 25.0%
! TAAATGATTAACAATTGCAG+GGG + chr5_3:10464963-10464982 Msa0798000:three_prime_UTR 25.0%
! TTAAAAATGTTACTACTACG+TGG + chr5_3:10465243-10465262 Msa0798000:three_prime_UTR 25.0%
GACCAATAAAAAAGAGGTAA+GGG + chr5_3:10463275-10463294 Msa0798000:five_prime_UTR 30.0%
!!! AACCCTTACCTCTTTTTTAT+TGG - chr5_3:10463280-10463299 None:intergenic 30.0%
! AGAAGAGTGCAAAGATTTAA+GGG - chr5_3:10463330-10463349 None:intergenic 30.0%
! AAGAAGAGTGCAAAGATTTA+AGG - chr5_3:10463331-10463350 None:intergenic 30.0%
!! AAATTTTTGTTGACTGTGTC+CGG + chr5_3:10464032-10464051 Msa0798000:intron 30.0%
ATGATTATGCATGATGATTC+TGG + chr5_3:10464256-10464275 Msa0798000:three_prime_UTR 30.0%
TTTAGGTACCAAAACAATCT+GGG - chr5_3:10464455-10464474 None:intergenic 30.0%
AGGAAAAAAAAAATTAGCCC+AGG + chr5_3:10464861-10464880 Msa0798000:three_prime_UTR 30.0%
GGAAAAAAAAAATTAGCCCA+GGG + chr5_3:10464862-10464881 Msa0798000:three_prime_UTR 30.0%
GAAAAAAAAAATTAGCCCAG+GGG + chr5_3:10464863-10464882 Msa0798000:three_prime_UTR 30.0%
CAGCAAGTAACATATCAATA+AGG - chr5_3:10465066-10465085 None:intergenic 30.0%
!! ATTGATATGTTACTTGCTGT+CGG + chr5_3:10465067-10465086 Msa0798000:three_prime_UTR 30.0%
! TATTGTCTAAAATGTGACTG+TGG + chr5_3:10465118-10465137 Msa0798000:three_prime_UTR 30.0%
! TTTTGTGTCAGAAAGAAAGA+CGG + chr5_3:10465213-10465232 Msa0798000:three_prime_UTR 30.0%
CTACACAATGAATACCAAAA+AGG - chr5_3:10465288-10465307 None:intergenic 30.0%
!! CTTTTTGGTATTCATTGTGT+AGG + chr5_3:10465286-10465305 Msa0798000:three_prime_UTR 30.0%
GACCAATAAAAAAGAGGTAA+GGG + chr5_3:10463275-10463294 Msa0798000:five_prime_UTR 30.0%
!!! AACCCTTACCTCTTTTTTAT+TGG - chr5_3:10463280-10463299 None:intergenic 30.0%
! AGAAGAGTGCAAAGATTTAA+GGG - chr5_3:10463330-10463349 None:intergenic 30.0%
! AAGAAGAGTGCAAAGATTTA+AGG - chr5_3:10463331-10463350 None:intergenic 30.0%
!! AAATTTTTGTTGACTGTGTC+CGG + chr5_3:10464032-10464051 Msa0798000:intron 30.0%
ATGATTATGCATGATGATTC+TGG + chr5_3:10464256-10464275 Msa0798000:three_prime_UTR 30.0%
TTTAGGTACCAAAACAATCT+GGG - chr5_3:10464455-10464474 None:intergenic 30.0%
AGGAAAAAAAAAATTAGCCC+AGG + chr5_3:10464861-10464880 Msa0798000:three_prime_UTR 30.0%
GGAAAAAAAAAATTAGCCCA+GGG + chr5_3:10464862-10464881 Msa0798000:three_prime_UTR 30.0%
GAAAAAAAAAATTAGCCCAG+GGG + chr5_3:10464863-10464882 Msa0798000:three_prime_UTR 30.0%
CAGCAAGTAACATATCAATA+AGG - chr5_3:10465066-10465085 None:intergenic 30.0%
!! ATTGATATGTTACTTGCTGT+CGG + chr5_3:10465067-10465086 Msa0798000:three_prime_UTR 30.0%
! TATTGTCTAAAATGTGACTG+TGG + chr5_3:10465118-10465137 Msa0798000:three_prime_UTR 30.0%
! TTTTGTGTCAGAAAGAAAGA+CGG + chr5_3:10465213-10465232 Msa0798000:three_prime_UTR 30.0%
CTACACAATGAATACCAAAA+AGG - chr5_3:10465288-10465307 None:intergenic 30.0%
!! CTTTTTGGTATTCATTGTGT+AGG + chr5_3:10465286-10465305 Msa0798000:three_prime_UTR 30.0%
AAAAACAGGTCATGATTACG+TGG + chr5_3:10463253-10463272 Msa0798000:five_prime_UTR 35.0%
TACGTGGACCAATAAAAAAG+AGG + chr5_3:10463269-10463288 Msa0798000:five_prime_UTR 35.0%
GGACCAATAAAAAAGAGGTA+AGG + chr5_3:10463274-10463293 Msa0798000:five_prime_UTR 35.0%
! AAAGATTTAAGGGTGTGTTG+AGG - chr5_3:10463320-10463339 None:intergenic 35.0%
!!! TTGTTTTGTTTTGGATTCGG+CGG - chr5_3:10463368-10463387 None:intergenic 35.0%
GTAAAGGAAACTGGAAGAAT+CGG + chr5_3:10463615-10463634 Msa0798000:CDS 35.0%
CTCAAAGCTTGCATTGAATT+AGG + chr5_3:10463674-10463693 Msa0798000:CDS 35.0%
! GCTTGCATTGAATTAGGTTT+TGG + chr5_3:10463680-10463699 Msa0798000:CDS 35.0%
TGAAGATGATGATCCACAAA+CGG + chr5_3:10464174-10464193 Msa0798000:intron 35.0%
! CAATGATGATGAGCATGAAT+GGG + chr5_3:10464285-10464304 Msa0798000:three_prime_UTR 35.0%
! AATGATGATGAGCATGAATG+GGG + chr5_3:10464286-10464305 Msa0798000:three_prime_UTR 35.0%
! GGGGATTATTGATGATTAAC+CGG + chr5_3:10464306-10464325 Msa0798000:three_prime_UTR 35.0%
ATTTCACTACCAAACAGAAC+CGG + chr5_3:10464405-10464424 Msa0798000:three_prime_UTR 35.0%
! TCTGGGTTTGGTTAAACTAA+AGG - chr5_3:10464438-10464457 None:intergenic 35.0%
! TAACCAAACCCAGATTGTTT+TGG + chr5_3:10464444-10464463 Msa0798000:three_prime_UTR 35.0%
CTTTAGGTACCAAAACAATC+TGG - chr5_3:10464456-10464475 None:intergenic 35.0%
AATAGGCGGCGTTTAAAAAT+TGG + chr5_3:10464524-10464543 Msa0798000:three_prime_UTR 35.0%
CAGATTAGCAAAAATGGCAT+GGG + chr5_3:10464619-10464638 Msa0798000:three_prime_UTR 35.0%
AATAGGCGGCGTTTAAAAAT+TGG - chr5_3:10464524-10464543 None:intergenic 35.0%
AAAAACAGGTCATGATTACG+TGG + chr5_3:10463253-10463272 Msa0798000:five_prime_UTR 35.0%
TACGTGGACCAATAAAAAAG+AGG + chr5_3:10463269-10463288 Msa0798000:five_prime_UTR 35.0%
GGACCAATAAAAAAGAGGTA+AGG + chr5_3:10463274-10463293 Msa0798000:five_prime_UTR 35.0%
! AAAGATTTAAGGGTGTGTTG+AGG - chr5_3:10463320-10463339 None:intergenic 35.0%
!!! TTGTTTTGTTTTGGATTCGG+CGG - chr5_3:10463368-10463387 None:intergenic 35.0%
GTAAAGGAAACTGGAAGAAT+CGG + chr5_3:10463615-10463634 Msa0798000:CDS 35.0%
CTCAAAGCTTGCATTGAATT+AGG + chr5_3:10463674-10463693 Msa0798000:CDS 35.0%
! GCTTGCATTGAATTAGGTTT+TGG + chr5_3:10463680-10463699 Msa0798000:CDS 35.0%
TGAAGATGATGATCCACAAA+CGG + chr5_3:10464174-10464193 Msa0798000:intron 35.0%
! CAATGATGATGAGCATGAAT+GGG + chr5_3:10464285-10464304 Msa0798000:three_prime_UTR 35.0%
! AATGATGATGAGCATGAATG+GGG + chr5_3:10464286-10464305 Msa0798000:three_prime_UTR 35.0%
! GGGGATTATTGATGATTAAC+CGG + chr5_3:10464306-10464325 Msa0798000:three_prime_UTR 35.0%
ATTTCACTACCAAACAGAAC+CGG + chr5_3:10464405-10464424 Msa0798000:three_prime_UTR 35.0%
! TCTGGGTTTGGTTAAACTAA+AGG - chr5_3:10464438-10464457 None:intergenic 35.0%
! TAACCAAACCCAGATTGTTT+TGG + chr5_3:10464444-10464463 Msa0798000:three_prime_UTR 35.0%
CTTTAGGTACCAAAACAATC+TGG - chr5_3:10464456-10464475 None:intergenic 35.0%
AATAGGCGGCGTTTAAAAAT+TGG + chr5_3:10464524-10464543 Msa0798000:three_prime_UTR 35.0%
CAGATTAGCAAAAATGGCAT+GGG + chr5_3:10464619-10464638 Msa0798000:three_prime_UTR 35.0%
AATAGGCGGCGTTTAAAAAT+TGG - chr5_3:10464524-10464543 None:intergenic 35.0%
!!! GATTCGGCGGTTTTTTGAAT+GGG - chr5_3:10463355-10463374 None:intergenic 40.0%
ACGACGATCAGTTTCAACTT+CGG - chr5_3:10463720-10463739 None:intergenic 40.0%
GCATGATAAAGTTCAAGAGC+AGG - chr5_3:10463758-10463777 None:intergenic 40.0%
AATATTACCGTTGCCGAAGA+TGG - chr5_3:10463900-10463919 None:intergenic 40.0%
ATGCATGATGATTCTGGTGA+TGG + chr5_3:10464262-10464281 Msa0798000:three_prime_UTR 40.0%
! GCAATGATGATGAGCATGAA+TGG + chr5_3:10464284-10464303 Msa0798000:three_prime_UTR 40.0%
! ATGATGATGAGCATGAATGG+GGG + chr5_3:10464287-10464306 Msa0798000:three_prime_UTR 40.0%
! ACCATGGTTGGATTTTTCTC+CGG - chr5_3:10464328-10464347 None:intergenic 40.0%
TTGGTTAAACTAAAGGCTCG+TGG - chr5_3:10464431-10464450 None:intergenic 40.0%
GTACCAAAACAATCTGGGTT+TGG - chr5_3:10464450-10464469 None:intergenic 40.0%
TGCCAGGATTAACGATTACA+GGG - chr5_3:10464551-10464570 None:intergenic 40.0%
ATGCCAGGATTAACGATTAC+AGG - chr5_3:10464552-10464571 None:intergenic 40.0%
! TTTGCTAATCTGGTGACGTA+AGG - chr5_3:10464611-10464630 None:intergenic 40.0%
CGTCACCAGATTAGCAAAAA+TGG + chr5_3:10464613-10464632 Msa0798000:three_prime_UTR 40.0%
!!! CCATGCCATTTTTGCTAATC+TGG - chr5_3:10464621-10464640 None:intergenic 40.0%
CCAGATTAGCAAAAATGGCA+TGG + chr5_3:10464618-10464637 Msa0798000:three_prime_UTR 40.0%
!!! AAATTAGCCCAGGGGTATTT+TGG + chr5_3:10464871-10464890 Msa0798000:three_prime_UTR 40.0%
GAATTGACCAAAATACCCCT+GGG - chr5_3:10464881-10464900 None:intergenic 40.0%
CAGATTGGCAAAAATGGCAT+GGG - chr5_3:10464903-10464922 None:intergenic 40.0%
!! GCAGTGATTAAGTTGGTCAA+AGG + chr5_3:10464931-10464950 Msa0798000:three_prime_UTR 40.0%
TGTCTTTAGTCCCTGCAAAT+AGG - chr5_3:10465035-10465054 None:intergenic 40.0%
AATACCAAAAAGGAGCAGCA+GGG - chr5_3:10465278-10465297 None:intergenic 40.0%
TGGTATTCATTGTGTAGGTG+TGG + chr5_3:10465291-10465310 Msa0798000:three_prime_UTR 40.0%
!!! GATTCGGCGGTTTTTTGAAT+GGG - chr5_3:10463355-10463374 None:intergenic 40.0%
ACGACGATCAGTTTCAACTT+CGG - chr5_3:10463720-10463739 None:intergenic 40.0%
GCATGATAAAGTTCAAGAGC+AGG - chr5_3:10463758-10463777 None:intergenic 40.0%
AATATTACCGTTGCCGAAGA+TGG - chr5_3:10463900-10463919 None:intergenic 40.0%
ATGCATGATGATTCTGGTGA+TGG + chr5_3:10464262-10464281 Msa0798000:three_prime_UTR 40.0%
! GCAATGATGATGAGCATGAA+TGG + chr5_3:10464284-10464303 Msa0798000:three_prime_UTR 40.0%
! ATGATGATGAGCATGAATGG+GGG + chr5_3:10464287-10464306 Msa0798000:three_prime_UTR 40.0%
! ACCATGGTTGGATTTTTCTC+CGG - chr5_3:10464328-10464347 None:intergenic 40.0%
TTGGTTAAACTAAAGGCTCG+TGG - chr5_3:10464431-10464450 None:intergenic 40.0%
GTACCAAAACAATCTGGGTT+TGG - chr5_3:10464450-10464469 None:intergenic 40.0%
TGCCAGGATTAACGATTACA+GGG - chr5_3:10464551-10464570 None:intergenic 40.0%
ATGCCAGGATTAACGATTAC+AGG - chr5_3:10464552-10464571 None:intergenic 40.0%
! TTTGCTAATCTGGTGACGTA+AGG - chr5_3:10464611-10464630 None:intergenic 40.0%
CGTCACCAGATTAGCAAAAA+TGG + chr5_3:10464613-10464632 Msa0798000:three_prime_UTR 40.0%
!!! CCATGCCATTTTTGCTAATC+TGG - chr5_3:10464621-10464640 None:intergenic 40.0%
CCAGATTAGCAAAAATGGCA+TGG + chr5_3:10464618-10464637 Msa0798000:three_prime_UTR 40.0%
!!! AAATTAGCCCAGGGGTATTT+TGG + chr5_3:10464871-10464890 Msa0798000:three_prime_UTR 40.0%
GAATTGACCAAAATACCCCT+GGG - chr5_3:10464881-10464900 None:intergenic 40.0%
CAGATTGGCAAAAATGGCAT+GGG - chr5_3:10464903-10464922 None:intergenic 40.0%
!! GCAGTGATTAAGTTGGTCAA+AGG + chr5_3:10464931-10464950 Msa0798000:three_prime_UTR 40.0%
TGTCTTTAGTCCCTGCAAAT+AGG - chr5_3:10465035-10465054 None:intergenic 40.0%
AATACCAAAAAGGAGCAGCA+GGG - chr5_3:10465278-10465297 None:intergenic 40.0%
TGGTATTCATTGTGTAGGTG+TGG + chr5_3:10465291-10465310 Msa0798000:three_prime_UTR 40.0%
GTTGAGGTGGTAGATCAAGT+TGG - chr5_3:10463304-10463323 None:intergenic 45.0%
! GATTTAAGGGTGTGTTGAGG+TGG - chr5_3:10463317-10463336 None:intergenic 45.0%
!!! GGATTCGGCGGTTTTTTGAA+TGG - chr5_3:10463356-10463375 None:intergenic 45.0%
GGAAGACGCTATGGCTTATT+AGG - chr5_3:10463405-10463424 None:intergenic 45.0%
AATTCTTGCCTTAGCAGTGG+TGG - chr5_3:10463527-10463546 None:intergenic 45.0%
GAGAATTCTTGCCTTAGCAG+TGG - chr5_3:10463530-10463549 None:intergenic 45.0%
CGACGATCAGTTTCAACTTC+GGG - chr5_3:10463719-10463738 None:intergenic 45.0%
TGAAGCACAAACACAGACAC+CGG - chr5_3:10464054-10464073 None:intergenic 45.0%
ATCCACAAACGGTGAAGACA+AGG + chr5_3:10464185-10464204 Msa0798000:CDS 45.0%
AACCTTGTCTTCACCGTTTG+TGG - chr5_3:10464190-10464209 None:intergenic 45.0%
TGAAGACAAGGTTGAGACAG+TGG + chr5_3:10464197-10464216 Msa0798000:CDS 45.0%
GAAGACAAGGTTGAGACAGT+GGG + chr5_3:10464198-10464217 Msa0798000:CDS 45.0%
ACCGGAGAAAAATCCAACCA+TGG + chr5_3:10464324-10464343 Msa0798000:three_prime_UTR 45.0%
TTAAACTAAAGGCTCGTGGC+CGG - chr5_3:10464427-10464446 None:intergenic 45.0%
TTAAACGCCGCCTATTTGCA+GGG - chr5_3:10465022-10465041 None:intergenic 45.0%
TTTAAACGCCGCCTATTTGC+AGG - chr5_3:10465021-10465040 None:intergenic 45.0%
GTCCCTGTAATCGTTAATCC+TGG + chr5_3:10464546-10464565 Msa0798000:three_prime_UTR 45.0%
AATTGCAGGGGTAAAATGCC+AGG - chr5_3:10464975-10464994 None:intergenic 45.0%
GGAATTGACCAAAATACCCC+TGG - chr5_3:10464882-10464901 None:intergenic 45.0%
CCAGATTGGCAAAAATGGCA+TGG - chr5_3:10464904-10464923 None:intergenic 45.0%
!!! CCATGCCATTTTTGCCAATC+TGG + chr5_3:10464901-10464920 Msa0798000:three_prime_UTR 45.0%
CGTCACCAGATTGGCAAAAA+TGG - chr5_3:10464909-10464928 None:intergenic 45.0%
!! TTTTTGCCAATCTGGTGACG+TGG + chr5_3:10464909-10464928 Msa0798000:three_prime_UTR 45.0%
TGACGTGGCAGTGATTAAGT+TGG + chr5_3:10464924-10464943 Msa0798000:three_prime_UTR 45.0%
AATTGCAGGGGTAAAATGCC+AGG + chr5_3:10464975-10464994 Msa0798000:three_prime_UTR 45.0%
! ATGCCAGGATTAGCGATTAC+AGG + chr5_3:10464990-10465009 Msa0798000:three_prime_UTR 45.0%
! TGCCAGGATTAGCGATTACA+GGG + chr5_3:10464991-10465010 Msa0798000:three_prime_UTR 45.0%
TTTAAACGCCGCCTATTTGC+AGG + chr5_3:10465021-10465040 Msa0798000:three_prime_UTR 45.0%
TTAAACGCCGCCTATTTGCA+GGG + chr5_3:10465022-10465041 Msa0798000:three_prime_UTR 45.0%
CTTTAGTCCCTGCAAATAGG+CGG - chr5_3:10465032-10465051 None:intergenic 45.0%
ATACCAAAAAGGAGCAGCAG+GGG - chr5_3:10465277-10465296 None:intergenic 45.0%
GAATACCAAAAAGGAGCAGC+AGG - chr5_3:10465279-10465298 None:intergenic 45.0%
GTTGAGGTGGTAGATCAAGT+TGG - chr5_3:10463304-10463323 None:intergenic 45.0%
! GATTTAAGGGTGTGTTGAGG+TGG - chr5_3:10463317-10463336 None:intergenic 45.0%
!!! GGATTCGGCGGTTTTTTGAA+TGG - chr5_3:10463356-10463375 None:intergenic 45.0%
GGAAGACGCTATGGCTTATT+AGG - chr5_3:10463405-10463424 None:intergenic 45.0%
AATTCTTGCCTTAGCAGTGG+TGG - chr5_3:10463527-10463546 None:intergenic 45.0%
GAGAATTCTTGCCTTAGCAG+TGG - chr5_3:10463530-10463549 None:intergenic 45.0%
CGACGATCAGTTTCAACTTC+GGG - chr5_3:10463719-10463738 None:intergenic 45.0%
TGAAGCACAAACACAGACAC+CGG - chr5_3:10464054-10464073 None:intergenic 45.0%
ATCCACAAACGGTGAAGACA+AGG + chr5_3:10464185-10464204 Msa0798000:CDS 45.0%
AACCTTGTCTTCACCGTTTG+TGG - chr5_3:10464190-10464209 None:intergenic 45.0%
TGAAGACAAGGTTGAGACAG+TGG + chr5_3:10464197-10464216 Msa0798000:CDS 45.0%
GAAGACAAGGTTGAGACAGT+GGG + chr5_3:10464198-10464217 Msa0798000:CDS 45.0%
ACCGGAGAAAAATCCAACCA+TGG + chr5_3:10464324-10464343 Msa0798000:three_prime_UTR 45.0%
TTAAACTAAAGGCTCGTGGC+CGG - chr5_3:10464427-10464446 None:intergenic 45.0%
TTAAACGCCGCCTATTTGCA+GGG - chr5_3:10465022-10465041 None:intergenic 45.0%
TTTAAACGCCGCCTATTTGC+AGG - chr5_3:10465021-10465040 None:intergenic 45.0%
GTCCCTGTAATCGTTAATCC+TGG + chr5_3:10464546-10464565 Msa0798000:three_prime_UTR 45.0%
AATTGCAGGGGTAAAATGCC+AGG - chr5_3:10464975-10464994 None:intergenic 45.0%
GGAATTGACCAAAATACCCC+TGG - chr5_3:10464882-10464901 None:intergenic 45.0%
CCAGATTGGCAAAAATGGCA+TGG - chr5_3:10464904-10464923 None:intergenic 45.0%
!!! CCATGCCATTTTTGCCAATC+TGG + chr5_3:10464901-10464920 Msa0798000:three_prime_UTR 45.0%
CGTCACCAGATTGGCAAAAA+TGG - chr5_3:10464909-10464928 None:intergenic 45.0%
!! TTTTTGCCAATCTGGTGACG+TGG + chr5_3:10464909-10464928 Msa0798000:three_prime_UTR 45.0%
TGACGTGGCAGTGATTAAGT+TGG + chr5_3:10464924-10464943 Msa0798000:three_prime_UTR 45.0%
AATTGCAGGGGTAAAATGCC+AGG + chr5_3:10464975-10464994 Msa0798000:three_prime_UTR 45.0%
! ATGCCAGGATTAGCGATTAC+AGG + chr5_3:10464990-10465009 Msa0798000:three_prime_UTR 45.0%
! TGCCAGGATTAGCGATTACA+GGG + chr5_3:10464991-10465010 Msa0798000:three_prime_UTR 45.0%
TTTAAACGCCGCCTATTTGC+AGG + chr5_3:10465021-10465040 Msa0798000:three_prime_UTR 45.0%
TTAAACGCCGCCTATTTGCA+GGG + chr5_3:10465022-10465041 Msa0798000:three_prime_UTR 45.0%
CTTTAGTCCCTGCAAATAGG+CGG - chr5_3:10465032-10465051 None:intergenic 45.0%
ATACCAAAAAGGAGCAGCAG+GGG - chr5_3:10465277-10465296 None:intergenic 45.0%
GAATACCAAAAAGGAGCAGC+AGG - chr5_3:10465279-10465298 None:intergenic 45.0%
!! AGAAAGGAAGGTGGTGGAGA+TGG - chr5_3:10463494-10463513 None:intergenic 50.0%
TGGAAGAGAAAGGAAGGTGG+TGG - chr5_3:10463500-10463519 None:intergenic 50.0%
GCTTCGTCACGGTAAAGATC+AGG - chr5_3:10463584-10463603 None:intergenic 50.0%
ATCTTTACCGTGACGAAGCG+TGG + chr5_3:10463585-10463604 Msa0798000:CDS 50.0%
GGCTTCGTCGTAAAGGAAAC+TGG + chr5_3:10463606-10463625 Msa0798000:CDS 50.0%
! TAGTAACGGCGGCGGATTTA+GGG - chr5_3:10463811-10463830 None:intergenic 50.0%
GGAGGAAGACGGTGTAGTAA+CGG - chr5_3:10463825-10463844 None:intergenic 50.0%
!! AGAAGGAGTGCCATCACGAT+CGG - chr5_3:10463855-10463874 None:intergenic 50.0%
ATTACCGTTGCCGAAGATGG+CGG - chr5_3:10463897-10463916 None:intergenic 50.0%
TGTGTTTCGCCCCTGCAAAT+AGG + chr5_3:10464507-10464526 Msa0798000:three_prime_UTR 50.0%
TAAACGCCGCCTATTTGCAG+GGG - chr5_3:10465023-10465042 None:intergenic 50.0%
GTCCCTGTAATCGCTAATCC+TGG - chr5_3:10464996-10465015 None:intergenic 50.0%
! AATCCCCTGCTGCTCCTTTT+TGG + chr5_3:10465271-10465290 Msa0798000:three_prime_UTR 50.0%
!! AGAAAGGAAGGTGGTGGAGA+TGG - chr5_3:10463494-10463513 None:intergenic 50.0%
TGGAAGAGAAAGGAAGGTGG+TGG - chr5_3:10463500-10463519 None:intergenic 50.0%
GCTTCGTCACGGTAAAGATC+AGG - chr5_3:10463584-10463603 None:intergenic 50.0%
ATCTTTACCGTGACGAAGCG+TGG + chr5_3:10463585-10463604 Msa0798000:CDS 50.0%
GGCTTCGTCGTAAAGGAAAC+TGG + chr5_3:10463606-10463625 Msa0798000:CDS 50.0%
! TAGTAACGGCGGCGGATTTA+GGG - chr5_3:10463811-10463830 None:intergenic 50.0%
GGAGGAAGACGGTGTAGTAA+CGG - chr5_3:10463825-10463844 None:intergenic 50.0%
!! AGAAGGAGTGCCATCACGAT+CGG - chr5_3:10463855-10463874 None:intergenic 50.0%
ATTACCGTTGCCGAAGATGG+CGG - chr5_3:10463897-10463916 None:intergenic 50.0%
TGTGTTTCGCCCCTGCAAAT+AGG + chr5_3:10464507-10464526 Msa0798000:three_prime_UTR 50.0%
TAAACGCCGCCTATTTGCAG+GGG - chr5_3:10465023-10465042 None:intergenic 50.0%
GTCCCTGTAATCGCTAATCC+TGG - chr5_3:10464996-10465015 None:intergenic 50.0%
! AATCCCCTGCTGCTCCTTTT+TGG + chr5_3:10465271-10465290 Msa0798000:three_prime_UTR 50.0%
!! GACATCGGAGCGTTGTTGTG+CGG - chr5_3:10463455-10463474 None:intergenic 55.0%
!! AAGGAAGGTGGTGGAGATGG+CGG - chr5_3:10463491-10463510 None:intergenic 55.0%
CGGTGGAAGAGAAAGGAAGG+TGG - chr5_3:10463503-10463522 None:intergenic 55.0%
GGACGGTGGAAGAGAAAGGA+AGG - chr5_3:10463506-10463525 None:intergenic 55.0%
! TGGTGGACGGTGGAAGAGAA+AGG - chr5_3:10463510-10463529 None:intergenic 55.0%
! CTTGCCTTAGCAGTGGTGGA+CGG - chr5_3:10463523-10463542 None:intergenic 55.0%
GAAGCGTGGCTTCGTCGTAA+AGG + chr5_3:10463599-10463618 Msa0798000:CDS 55.0%
! GTAGTAACGGCGGCGGATTT+AGG - chr5_3:10463812-10463831 None:intergenic 55.0%
GGAAGACGGTGTAGTAACGG+CGG - chr5_3:10463822-10463841 None:intergenic 55.0%
AAGGTTGAGACAGTGGGCAC+AGG + chr5_3:10464204-10464223 Msa0798000:CDS 55.0%
! GGCACAGGTTGTTGCTTGTG+CGG + chr5_3:10464219-10464238 Msa0798000:CDS 55.0%
GTTTCGCCCCTGCAAATAGG+CGG + chr5_3:10464510-10464529 Msa0798000:three_prime_UTR 55.0%
TCACTGCCACGTCACCAGAT+TGG - chr5_3:10464918-10464937 None:intergenic 55.0%
!! GACATCGGAGCGTTGTTGTG+CGG - chr5_3:10463455-10463474 None:intergenic 55.0%
!! AAGGAAGGTGGTGGAGATGG+CGG - chr5_3:10463491-10463510 None:intergenic 55.0%
CGGTGGAAGAGAAAGGAAGG+TGG - chr5_3:10463503-10463522 None:intergenic 55.0%
GGACGGTGGAAGAGAAAGGA+AGG - chr5_3:10463506-10463525 None:intergenic 55.0%
! TGGTGGACGGTGGAAGAGAA+AGG - chr5_3:10463510-10463529 None:intergenic 55.0%
! CTTGCCTTAGCAGTGGTGGA+CGG - chr5_3:10463523-10463542 None:intergenic 55.0%
GAAGCGTGGCTTCGTCGTAA+AGG + chr5_3:10463599-10463618 Msa0798000:CDS 55.0%
! GTAGTAACGGCGGCGGATTT+AGG - chr5_3:10463812-10463831 None:intergenic 55.0%
GGAAGACGGTGTAGTAACGG+CGG - chr5_3:10463822-10463841 None:intergenic 55.0%
AAGGTTGAGACAGTGGGCAC+AGG + chr5_3:10464204-10464223 Msa0798000:CDS 55.0%
! GGCACAGGTTGTTGCTTGTG+CGG + chr5_3:10464219-10464238 Msa0798000:CDS 55.0%
GTTTCGCCCCTGCAAATAGG+CGG + chr5_3:10464510-10464529 Msa0798000:three_prime_UTR 55.0%
TCACTGCCACGTCACCAGAT+TGG - chr5_3:10464918-10464937 None:intergenic 55.0%
CGGTGCGTTGGAAGACGCTA+TGG - chr5_3:10463414-10463433 None:intergenic 60.0%
CGTTGTTGTGCGGAGGTCGA+GGG - chr5_3:10463445-10463464 None:intergenic 60.0%
!! ATCGGAGCGTTGTTGTGCGG+AGG - chr5_3:10463452-10463471 None:intergenic 60.0%
GGCGCGTAGGGATCAGACAT+CGG - chr5_3:10463470-10463489 None:intergenic 60.0%
TCCACCGTCCACCACTGCTA+AGG + chr5_3:10463516-10463535 Msa0798000:CDS 60.0%
CACGATCGCTGCTTGAGGAG+AGG - chr5_3:10463557-10463576 None:intergenic 60.0%
CTCTCCTCAAGCAGCGATCG+TGG + chr5_3:10463555-10463574 Msa0798000:CDS 60.0%
GACGAAGCCACGCTTCGTCA+CGG - chr5_3:10463595-10463614 None:intergenic 60.0%
AGACGGTGTAGTAACGGCGG+CGG - chr5_3:10463819-10463838 None:intergenic 60.0%
!! AGGAGTGCCATCACGATCGG+AGG - chr5_3:10463852-10463871 None:intergenic 60.0%
GATGGCACTCCTTCTCCTCG+TGG + chr5_3:10463860-10463879 Msa0798000:CDS 60.0%
CGGTGCGTTGGAAGACGCTA+TGG - chr5_3:10463414-10463433 None:intergenic 60.0%
CGTTGTTGTGCGGAGGTCGA+GGG - chr5_3:10463445-10463464 None:intergenic 60.0%
!! ATCGGAGCGTTGTTGTGCGG+AGG - chr5_3:10463452-10463471 None:intergenic 60.0%
GGCGCGTAGGGATCAGACAT+CGG - chr5_3:10463470-10463489 None:intergenic 60.0%
TCCACCGTCCACCACTGCTA+AGG + chr5_3:10463516-10463535 Msa0798000:CDS 60.0%
CACGATCGCTGCTTGAGGAG+AGG - chr5_3:10463557-10463576 None:intergenic 60.0%
CTCTCCTCAAGCAGCGATCG+TGG + chr5_3:10463555-10463574 Msa0798000:CDS 60.0%
GACGAAGCCACGCTTCGTCA+CGG - chr5_3:10463595-10463614 None:intergenic 60.0%
AGACGGTGTAGTAACGGCGG+CGG - chr5_3:10463819-10463838 None:intergenic 60.0%
!! AGGAGTGCCATCACGATCGG+AGG - chr5_3:10463852-10463871 None:intergenic 60.0%
GATGGCACTCCTTCTCCTCG+TGG + chr5_3:10463860-10463879 Msa0798000:CDS 60.0%
GTCTTCCAACGCACCGTGCG+AGG + chr5_3:10463418-10463437 Msa0798000:five_prime_UTR 65.0%
GCGTTGTTGTGCGGAGGTCG+AGG - chr5_3:10463446-10463465 None:intergenic 65.0%
!! GCCTTAGCAGTGGTGGACGG+TGG - chr5_3:10463520-10463539 None:intergenic 65.0%
GCGACCACGATCGCTGCTTG+AGG - chr5_3:10463562-10463581 None:intergenic 65.0%
TCGGAGGCTGCGGAGGAAGA+CGG - chr5_3:10463836-10463855 None:intergenic 65.0%
ATCACGATCGGAGGCTGCGG+AGG - chr5_3:10463843-10463862 None:intergenic 65.0%
TCCGCAGCCTCCGATCGTGA+TGG + chr5_3:10463842-10463861 Msa0798000:CDS 65.0%
GCCATCACGATCGGAGGCTG+CGG - chr5_3:10463846-10463865 None:intergenic 65.0%
AGCCCTCGCACCGCCATCTT+CGG + chr5_3:10463884-10463903 Msa0798000:CDS 65.0%
! TGCCGAAGATGGCGGTGCGA+GGG - chr5_3:10463889-10463908 None:intergenic 65.0%
! TTGCCGAAGATGGCGGTGCG+AGG - chr5_3:10463890-10463909 None:intergenic 65.0%
CGCACCGCCATCTTCGGCAA+CGG + chr5_3:10463890-10463909 Msa0798000:CDS 65.0%
! GGCTCGTGGCCGGTTCTGTT+TGG - chr5_3:10464417-10464436 None:intergenic 65.0%
GTCTTCCAACGCACCGTGCG+AGG + chr5_3:10463418-10463437 Msa0798000:five_prime_UTR 65.0%
GCGTTGTTGTGCGGAGGTCG+AGG - chr5_3:10463446-10463465 None:intergenic 65.0%
!! GCCTTAGCAGTGGTGGACGG+TGG - chr5_3:10463520-10463539 None:intergenic 65.0%
GCGACCACGATCGCTGCTTG+AGG - chr5_3:10463562-10463581 None:intergenic 65.0%
TCGGAGGCTGCGGAGGAAGA+CGG - chr5_3:10463836-10463855 None:intergenic 65.0%
ATCACGATCGGAGGCTGCGG+AGG - chr5_3:10463843-10463862 None:intergenic 65.0%
TCCGCAGCCTCCGATCGTGA+TGG + chr5_3:10463842-10463861 Msa0798000:CDS 65.0%
GCCATCACGATCGGAGGCTG+CGG - chr5_3:10463846-10463865 None:intergenic 65.0%
AGCCCTCGCACCGCCATCTT+CGG + chr5_3:10463884-10463903 Msa0798000:CDS 65.0%
! TGCCGAAGATGGCGGTGCGA+GGG - chr5_3:10463889-10463908 None:intergenic 65.0%
! TTGCCGAAGATGGCGGTGCG+AGG - chr5_3:10463890-10463909 None:intergenic 65.0%
CGCACCGCCATCTTCGGCAA+CGG + chr5_3:10463890-10463909 Msa0798000:CDS 65.0%
! GGCTCGTGGCCGGTTCTGTT+TGG - chr5_3:10464417-10464436 None:intergenic 65.0%
AGGGACCTCGCACGGTGCGT+TGG - chr5_3:10463426-10463445 None:intergenic 70.0%
GGAGGTCGAGGGACCTCGCA+CGG - chr5_3:10463434-10463453 None:intergenic 70.0%
! GGTGGAGATGGCGGCGCGTA+GGG - chr5_3:10463482-10463501 None:intergenic 70.0%
! TGGTGGAGATGGCGGCGCGT+AGG - chr5_3:10463483-10463502 None:intergenic 70.0%
CGAGGGCTGCCACGAGGAGA+AGG - chr5_3:10463872-10463891 None:intergenic 70.0%
AGGGACCTCGCACGGTGCGT+TGG - chr5_3:10463426-10463445 None:intergenic 70.0%
GGAGGTCGAGGGACCTCGCA+CGG - chr5_3:10463434-10463453 None:intergenic 70.0%
! GGTGGAGATGGCGGCGCGTA+GGG - chr5_3:10463482-10463501 None:intergenic 70.0%
! TGGTGGAGATGGCGGCGCGT+AGG - chr5_3:10463483-10463502 None:intergenic 70.0%
CGAGGGCTGCCACGAGGAGA+AGG - chr5_3:10463872-10463891 None:intergenic 70.0%
! GCGGTGCGAGGGCTGCCACG+AGG - chr5_3:10463878-10463897 None:intergenic 80.0%
! GCGGTGCGAGGGCTGCCACG+AGG - chr5_3:10463878-10463897 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 10463229 10465334 10463229 ID=Msa0798000;Name=Msa0798000
chr5_3 mRNA 10463229 10465334 10463229 ID=Msa0798000-mRNA-1;Parent=Msa0798000;Name=Msa0798000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=241|1|1|1|1|1|2|1079|172
chr5_3 exon 10463229 10463911 10463229 ID=Msa0798000-mRNA-1:exon:4371;Parent=Msa0798000-mRNA-1
chr5_3 exon 10464179 10465334 10464179 ID=Msa0798000-mRNA-1:exon:4372;Parent=Msa0798000-mRNA-1
chr5_3 five_prime_UTR 10463229 10463469 10463229 ID=Msa0798000-mRNA-1:five_prime_utr;Parent=Msa0798000-mRNA-1
chr5_3 CDS 10463470 10463911 10463470 ID=Msa0798000-mRNA-1:cds;Parent=Msa0798000-mRNA-1
chr5_3 CDS 10464179 10464255 10464179 ID=Msa0798000-mRNA-1:cds;Parent=Msa0798000-mRNA-1
chr5_3 three_prime_UTR 10464256 10465334 10464256 ID=Msa0798000-mRNA-1:three_prime_utr;Parent=Msa0798000-mRNA-1
Gene Sequence

>Msa0798000

ATGTCTGATCCCTACGCGCCGCCATCTCCACCACCTTCCTTTCTCTTCCACCGTCCACCACTGCTAAGGCAAGAATTCTCTTCTCCTCTCCTCAAGCAGCGATCGTGGTCGCCTGATCTTTACCGTGACGAAGCGTGGCTTCGTCGTAAAGGAAACTGGAAGAATCGGAGAAGTAAAAGCGTTACTGATGAAGATGTTGATGAACTCAAAGCTTGCATTGAATTAGGTTTTGGATTTGAATCTTCACCCGAAGTTGAAACTGATCGTCGTCTTGTTGATACTTTACCTGCTCTTGAACTTTATCATGCTGTTAATAAAAGTTATAATGATTCTCGGAACCCTAAATCCGCCGCCGTTACTACACCGTCTTCCTCCGCAGCCTCCGATCGTGATGGCACTCCTTCTCCTCGTGGCAGCCCTCGCACCGCCATCTTCGGCAACGATGATGATCCACAAACGGTGAAGACAAGGTTGAGACAGTGGGCACAGGTTGTTGCTTGTGCGGTTCGTCAAAGCTGA
Protein sequence

>Msa0798000

MSDPYAPPSPPPSFLFHRPPLLRQEFSSPLLKQRSWSPDLYRDEAWLRRKGNWKNRRSKSVTDEDVDELKACIELGFGFESSPEVETDRRLVDTLPALELYHAVNKSYNDSRNPKSAAVTTPSSSAASDRDGTPSPRGSPRTAIFGNDDDPQTVKTRLRQWAQVVACAVRQS*