AlfalfaGEDB | Msa0798000

M. sativa cultivar zhongmu-4 / Msa0798000

KEGG: -
GO: -
PFAM: PF07939.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798000	XP_003611749.1	99.419	172	1	0	1	172	1	172	1.78e-120	347

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798000	G7K6Q0	99.419	172	1	0	1	172	1	172	8.49e-121	347

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0798000	0.804309	2.297685e-49	-8.615850e-47
Msa0016670	Msa0798000	-0.805533	1.275173e-49	-8.615850e-47
Msa0027260	Msa0798000	-0.804226	2.391111e-49	-8.615850e-47
Msa0027580	Msa0798000	-0.808574	2.896997e-50	-8.615850e-47
Msa0030380	Msa0798000	-0.848365	6.421911e-60	-8.615850e-47
Msa0032260	Msa0798000	-0.829066	6.336768e-55	-8.615850e-47
Msa0032840	Msa0798000	0.839861	1.229695e-57	-8.615850e-47
Msa0053110	Msa0798000	-0.801562	8.491078e-49	-8.615850e-47
Msa0073670	Msa0798000	-0.821045	4.975187e-53	-8.615850e-47
Msa0075340	Msa0798000	-0.807996	3.847508e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798000	MtrunA17_Chr5g0402271	99.419	172	1	0	1	172	1	172	1.64e-124	347
Msa0798000	MtrunA17_Chr1g0190591	48.718	117	44	4	61	172	80	185	4.04e-24	93.2
Msa0798000	MtrunA17_Chr4g0044791	52.747	91	33	3	27	110	12	99	2.01e-23	90.1
Msa0798000	MtrunA17_Chr7g0274251	42.500	120	50	4	61	172	77	185	2.00e-19	80.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0798000	AT4G33985.1	52.381	147	54	4	29	171	14	148	1.91e-39	131
Msa0798000	AT3G50350.2	53.147	143	52	4	33	172	38	168	1.02e-37	127
Msa0798000	AT2G15590.2	46.358	151	58	6	29	172	11	145	7.54e-33	115
Msa0798000	AT3G50350.1	57.273	110	36	5	7	111	18	121	1.09e-28	105
Msa0798000	AT2G15590.1	55.056	89	28	4	29	110	11	94	6.79e-24	91.3
Msa0798000	AT1G08790.1	40.559	143	66	5	42	172	53	188	1.84e-19	81.3
Msa0798000	AT3G04700.1	39.456	147	69	3	42	172	48	190	2.48e-19	81.3
Msa0798000	AT2G31560.2	39.316	117	57	4	57	170	94	199	4.53e-17	75.5
Msa0798000	AT2G31560.1	39.316	117	57	4	57	170	94	199	4.53e-17	75.5
Msa0798000	AT2G31560.3	39.316	117	57	4	57	170	94	199	4.53e-17	75.5

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Find 129 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTTAAGGGTGTGTTG+AGG	0.732717	5_3:-10463317	None:intergenic
AAATTAGCCCAGGGGTATTT+TGG	0.240384	5_3:+10464871	Msa0798000:three_prime_UTR
AACCTTGTCTTCACCGTTTG+TGG	0.303740	5_3:-10464187	None:intergenic
AAGAAGAGTGCAAAGATTTA+AGG	0.183003	5_3:-10463328	None:intergenic
AAGGAAGGTGGTGGAGATGG+CGG	0.597909	5_3:-10463488	None:intergenic
AAGGTTGAGACAGTGGGCAC+AGG	0.577432	5_3:+10464204	Msa0798000:CDS
AATATTACCGTTGCCGAAGA+TGG	0.416533	5_3:-10463897	None:intergenic
AATGATGATGAGCATGAATG+GGG	0.660943	5_3:+10464286	Msa0798000:three_prime_UTR
AATTCTTGCCTTAGCAGTGG+TGG	0.566176	5_3:-10463524	None:intergenic
AATTGCAGGGGTAAAATGCC+AGG	0.548437	5_3:-10464564	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACCAATAAAAAAGAGGTAA+GGG	+	chr5_3:10463275-10463294	Msa0798000:five_prime_UTR	30.0%
ATGATTATGCATGATGATTC+TGG	+	chr5_3:10464256-10464275	Msa0798000:three_prime_UTR	30.0%
TTTAGGTACCAAAACAATCT+GGG	-	chr5_3:10464455-10464474	None:intergenic	30.0%
AGGAAAAAAAAAATTAGCCC+AGG	+	chr5_3:10464861-10464880	Msa0798000:three_prime_UTR	30.0%
GGAAAAAAAAAATTAGCCCA+GGG	+	chr5_3:10464862-10464881	Msa0798000:three_prime_UTR	30.0%
GAAAAAAAAAATTAGCCCAG+GGG	+	chr5_3:10464863-10464882	Msa0798000:three_prime_UTR	30.0%
CAGCAAGTAACATATCAATA+AGG	-	chr5_3:10465066-10465085	None:intergenic	30.0%
CTACACAATGAATACCAAAA+AGG	-	chr5_3:10465288-10465307	None:intergenic	30.0%
GACCAATAAAAAAGAGGTAA+GGG	+	chr5_3:10463275-10463294	Msa0798000:five_prime_UTR	30.0%
ATGATTATGCATGATGATTC+TGG	+	chr5_3:10464256-10464275	Msa0798000:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	10463229	10465334	10463229	ID=Msa0798000;Name=Msa0798000
chr5_3	mRNA	10463229	10465334	10463229	ID=Msa0798000-mRNA-1;Parent=Msa0798000;Name=Msa0798000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=241\|1\|1\|1\|1\|1\|2\|1079\|172
chr5_3	exon	10463229	10463911	10463229	ID=Msa0798000-mRNA-1:exon:4371;Parent=Msa0798000-mRNA-1
chr5_3	exon	10464179	10465334	10464179	ID=Msa0798000-mRNA-1:exon:4372;Parent=Msa0798000-mRNA-1
chr5_3	five_prime_UTR	10463229	10463469	10463229	ID=Msa0798000-mRNA-1:five_prime_utr;Parent=Msa0798000-mRNA-1
chr5_3	CDS	10463470	10463911	10463470	ID=Msa0798000-mRNA-1:cds;Parent=Msa0798000-mRNA-1
chr5_3	CDS	10464179	10464255	10464179	ID=Msa0798000-mRNA-1:cds;Parent=Msa0798000-mRNA-1
chr5_3	three_prime_UTR	10464256	10465334	10464256	ID=Msa0798000-mRNA-1:three_prime_utr;Parent=Msa0798000-mRNA-1

Gene Sequence

>Msa0798000

ATGTCTGATCCCTACGCGCCGCCATCTCCACCACCTTCCTTTCTCTTCCACCGTCCACCACTGCTAAGGCAAGAATTCTCTTCTCCTCTCCTCAAGCAGCGATCGTGGTCGCCTGATCTTTACCGTGACGAAGCGTGGCTTCGTCGTAAAGGAAACTGGAAGAATCGGAGAAGTAAAAGCGTTACTGATGAAGATGTTGATGAACTCAAAGCTTGCATTGAATTAGGTTTTGGATTTGAATCTTCACCCGAAGTTGAAACTGATCGTCGTCTTGTTGATACTTTACCTGCTCTTGAACTTTATCATGCTGTTAATAAAAGTTATAATGATTCTCGGAACCCTAAATCCGCCGCCGTTACTACACCGTCTTCCTCCGCAGCCTCCGATCGTGATGGCACTCCTTCTCCTCGTGGCAGCCCTCGCACCGCCATCTTCGGCAACGATGATGATCCACAAACGGTGAAGACAAGGTTGAGACAGTGGGCACAGGTTGTTGCTTGTGCGGTTCGTCAAAGCTGA

Protein sequence

>Msa0798000

MSDPYAPPSPPPSFLFHRPPLLRQEFSSPLLKQRSWSPDLYRDEAWLRRKGNWKNRRSKSVTDEDVDELKACIELGFGFESSPEVETDRRLVDTLPALELYHAVNKSYNDSRNPKSAAVTTPSSSAASDRDGTPSPRGSPRTAIFGNDDDPQTVKTRLRQWAQVVACAVRQS*