Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330450 | KAG5039587.1 | 70.361 | 415 | 46 | 4 | 5 | 344 | 58 | 470 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330450 | A0A396ID29 | 77.778 | 432 | 7 | 3 | 1 | 344 | 51 | 481 | 0.0 | 661 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032920 | Msa1330450 | -0.833089 | 6.515765e-56 | -8.615850e-47 |
| Msa0032960 | Msa1330450 | -0.801658 | 8.117169e-49 | -8.615850e-47 |
| Msa0052870 | Msa1330450 | 0.814407 | 1.565222e-51 | -8.615850e-47 |
| Msa0093850 | Msa1330450 | 0.801491 | 8.780116e-49 | -8.615850e-47 |
| Msa0098470 | Msa1330450 | 0.813659 | 2.288547e-51 | -8.615850e-47 |
| Msa0108410 | Msa1330450 | 0.807068 | 6.053382e-50 | -8.615850e-47 |
| Msa0626450 | Msa1330450 | 0.820586 | 6.343456e-53 | -8.615850e-47 |
| Msa0626490 | Msa1330450 | 0.820873 | 5.448881e-53 | -8.615850e-47 |
| Msa0664600 | Msa1330450 | 0.824870 | 6.384035e-54 | -8.615850e-47 |
| Msa0706760 | Msa1330450 | 0.817455 | 3.267956e-52 | -8.615850e-47 |
| Msa0711430 | Msa1330450 | 0.815152 | 1.069975e-51 | -8.615850e-47 |
| Msa0778590 | Msa1330450 | 0.811212 | 7.838578e-51 | -8.615850e-47 |
| Msa0815960 | Msa1330450 | 0.804663 | 1.938960e-49 | -8.615850e-47 |
| Msa0832120 | Msa1330450 | 0.819562 | 1.088145e-52 | -8.615850e-47 |
| Msa0136650 | Msa1330450 | 0.811931 | 5.468760e-51 | -8.615850e-47 |
| Msa0146740 | Msa1330450 | 0.819547 | 1.097049e-52 | -8.615850e-47 |
| Msa0174450 | Msa1330450 | 0.800394 | 1.471197e-48 | -8.615850e-47 |
| Msa1290680 | Msa1330450 | 0.813082 | 3.064957e-51 | -8.615850e-47 |
| Msa1330450 | Msa1348090 | 0.845802 | 3.236243e-59 | -8.615850e-47 |
| Msa1330450 | Msa1371520 | 0.800903 | 1.158423e-48 | -8.615850e-47 |
| Msa1330450 | Msa1427110 | 0.814210 | 1.730047e-51 | -8.615850e-47 |
| Msa1330450 | Msa1440310 | 0.810537 | 1.097510e-50 | -8.615850e-47 |
| Msa1330450 | Msa1440960 | 0.818147 | 2.281334e-52 | -8.615850e-47 |
| Msa1330450 | Msa1459460 | 0.800264 | 1.563464e-48 | -8.615850e-47 |
| Msa0369790 | Msa1330450 | 0.802683 | 4.993181e-49 | -8.615850e-47 |
| Msa0378720 | Msa1330450 | 0.835649 | 1.483922e-56 | -8.615850e-47 |
| Msa0380620 | Msa1330450 | 0.805863 | 1.087110e-49 | -8.615850e-47 |
| Msa0428370 | Msa1330450 | 0.803591 | 3.240945e-49 | -8.615850e-47 |
| Msa0430260 | Msa1330450 | 0.827893 | 1.216697e-54 | -8.615850e-47 |
| Msa0474730 | Msa1330450 | 0.833686 | 4.623929e-56 | -8.615850e-47 |
| Msa1035060 | Msa1330450 | 0.803430 | 3.499051e-49 | -8.615850e-47 |
| Msa1072940 | Msa1330450 | 0.812885 | 3.383871e-51 | -8.615850e-47 |
| Msa1085330 | Msa1330450 | 0.823326 | 1.471420e-53 | -8.615850e-47 |
| Msa0247890 | Msa1330450 | 0.810948 | 8.942566e-51 | -8.615850e-47 |
| Msa0300320 | Msa1330450 | 0.807679 | 4.493775e-50 | -8.615850e-47 |
| Msa0307270 | Msa1330450 | 0.823858 | 1.104366e-53 | -8.615850e-47 |
| Msa0307570 | Msa1330450 | 0.810903 | 9.143823e-51 | -8.615850e-47 |
| Msa0312530 | Msa1330450 | 0.800021 | 1.751796e-48 | -8.615850e-47 |
| Msa0338210 | Msa1330450 | 0.814257 | 1.689299e-51 | -8.615850e-47 |
| Msa0341690 | Msa1330450 | 0.809262 | 2.064342e-50 | -8.615850e-47 |
| Msa1160920 | Msa1330450 | 0.818508 | 1.889748e-52 | -8.615850e-47 |
| Msa0500380 | Msa1330450 | 0.820384 | 7.056418e-53 | -8.615850e-47 |
| Msa0519760 | Msa1330450 | 0.806976 | 6.330782e-50 | -8.615850e-47 |
| Msa0519840 | Msa1330450 | 0.811056 | 8.474446e-51 | -8.615850e-47 |
| Msa0556010 | Msa1330450 | 0.811794 | 5.858522e-51 | -8.615850e-47 |
| Msa0581690 | Msa1330450 | 0.811727 | 6.057834e-51 | -8.615850e-47 |
| Msa0861510 | Msa1330450 | 0.836103 | 1.138755e-56 | -8.615850e-47 |
| Msa0861530 | Msa1330450 | 0.823676 | 1.218606e-53 | -8.615850e-47 |
| Msa0861600 | Msa1330450 | 0.840454 | 8.612596e-58 | -8.615850e-47 |
| Msa0866520 | Msa1330450 | 0.803650 | 3.151038e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330450 | MtrunA17_Chr4g0058771 | 77.778 | 432 | 7 | 3 | 1 | 344 | 51 | 481 | 0.0 | 661 |
| Msa1330450 | MtrunA17_Chr3g0117271 | 72.126 | 348 | 47 | 2 | 46 | 344 | 150 | 496 | 0.0 | 528 |
| Msa1330450 | MtrunA17_Chr5g0413131 | 58.513 | 417 | 91 | 6 | 8 | 344 | 49 | 463 | 6.95e-164 | 465 |
| Msa1330450 | MtrunA17_Chr8g0368161 | 60.920 | 348 | 86 | 2 | 46 | 344 | 102 | 448 | 5.37e-155 | 442 |
| Msa1330450 | MtrunA17_Chr2g0314461 | 52.011 | 348 | 112 | 5 | 46 | 344 | 65 | 406 | 1.42e-122 | 358 |
| Msa1330450 | MtrunA17_Chr8g0368241 | 43.659 | 410 | 151 | 4 | 14 | 344 | 6 | 414 | 9.38e-119 | 349 |
| Msa1330450 | MtrunA17_Chr2g0314451 | 47.194 | 392 | 148 | 6 | 2 | 344 | 24 | 405 | 1.66e-118 | 348 |
| Msa1330450 | MtrunA17_Chr2g0314471 | 50.575 | 348 | 117 | 6 | 46 | 344 | 65 | 406 | 3.89e-117 | 344 |
| Msa1330450 | MtrunA17_Chr7g0274951 | 48.108 | 370 | 120 | 7 | 46 | 343 | 70 | 439 | 4.63e-114 | 338 |
| Msa1330450 | MtrunA17_Chr8g0380511 | 47.527 | 364 | 124 | 7 | 46 | 343 | 53 | 415 | 5.09e-112 | 332 |
| Msa1330450 | MtrunA17_Chr1g0189961 | 46.842 | 380 | 121 | 8 | 46 | 344 | 72 | 451 | 5.18e-112 | 333 |
| Msa1330450 | MtrunA17_Chr2g0309251 | 45.528 | 369 | 132 | 4 | 44 | 344 | 59 | 426 | 8.35e-106 | 316 |
| Msa1330450 | MtrunA17_Chr8g0368291 | 43.909 | 353 | 132 | 8 | 47 | 344 | 64 | 405 | 1.34e-94 | 287 |
| Msa1330450 | MtrunA17_Chr8g0368341 | 43.103 | 348 | 132 | 7 | 47 | 344 | 4 | 335 | 4.33e-90 | 273 |
| Msa1330450 | MtrunA17_Chr8g0368201 | 43.125 | 320 | 115 | 5 | 90 | 344 | 3 | 320 | 6.66e-82 | 251 |
| Msa1330450 | MtrunA17_Chr3g0129891 | 44.702 | 302 | 141 | 8 | 47 | 343 | 99 | 379 | 1.93e-81 | 252 |
| Msa1330450 | MtrunA17_Chr2g0326371 | 43.925 | 321 | 116 | 9 | 76 | 344 | 52 | 360 | 5.15e-78 | 243 |
| Msa1330450 | MtrunA17_Chr8g0368221 | 54.502 | 211 | 86 | 4 | 13 | 219 | 5 | 209 | 1.02e-70 | 221 |
| Msa1330450 | MtrunA17_Chr6g0453411 | 33.598 | 378 | 176 | 10 | 39 | 344 | 1 | 375 | 5.85e-61 | 199 |
| Msa1330450 | MtrunA17_Chr8g0368351 | 58.491 | 159 | 58 | 3 | 46 | 203 | 98 | 249 | 2.77e-60 | 194 |
| Msa1330450 | MtrunA17_Chr3g0135381 | 33.333 | 384 | 171 | 10 | 32 | 339 | 58 | 432 | 1.01e-54 | 186 |
| Msa1330450 | MtrunA17_Chr3g0135371 | 31.186 | 388 | 182 | 10 | 32 | 344 | 58 | 435 | 7.12e-54 | 182 |
| Msa1330450 | MtrunA17_Chr8g0368181 | 47.668 | 193 | 51 | 2 | 201 | 344 | 2 | 193 | 8.68e-53 | 172 |
| Msa1330450 | MtrunA17_Chr8g0368231 | 58.400 | 125 | 52 | 0 | 220 | 344 | 8 | 132 | 5.33e-49 | 160 |
| Msa1330450 | MtrunA17_Chr3g0135401 | 33.125 | 320 | 134 | 9 | 95 | 340 | 33 | 346 | 2.49e-45 | 158 |
| Msa1330450 | MtrunA17_Chr8g0368331 | 33.213 | 277 | 104 | 5 | 146 | 344 | 13 | 286 | 6.93e-44 | 152 |
| Msa1330450 | MtrunA17_Chr8g0368261 | 55.556 | 126 | 54 | 2 | 220 | 344 | 5 | 129 | 1.86e-43 | 146 |
| Msa1330450 | MtrunA17_Chr1g0151871 | 31.333 | 300 | 143 | 7 | 96 | 344 | 40 | 327 | 4.45e-42 | 149 |
| Msa1330450 | MtrunA17_Chr8g0368361 | 38.462 | 195 | 68 | 3 | 201 | 344 | 2 | 195 | 4.29e-38 | 134 |
| Msa1330450 | MtrunA17_Chr8g0368171 | 44.654 | 159 | 65 | 3 | 46 | 202 | 67 | 204 | 4.70e-38 | 135 |
| Msa1330450 | MtrunA17_Chr8g0368321 | 67.021 | 94 | 28 | 2 | 47 | 140 | 58 | 148 | 4.90e-38 | 134 |
| Msa1330450 | MtrunA17_Chr3g0135431 | 38.785 | 214 | 97 | 6 | 32 | 219 | 51 | 256 | 1.82e-37 | 139 |
| Msa1330450 | MtrunA17_Chr8g0368281 | 45.255 | 137 | 74 | 1 | 208 | 343 | 58 | 194 | 2.47e-37 | 132 |
| Msa1330450 | MtrunA17_Chr8g0368271 | 65.517 | 87 | 29 | 1 | 46 | 132 | 68 | 153 | 1.20e-32 | 120 |
| Msa1330450 | MtrunA17_Chr3g0135441 | 30.000 | 230 | 115 | 9 | 154 | 344 | 10 | 232 | 1.81e-25 | 102 |
| Msa1330450 | MtrunA17_Chr2g0302691 | 28.779 | 344 | 172 | 13 | 50 | 338 | 43 | 368 | 1.23e-24 | 103 |
| Msa1330450 | MtrunA17_Chr3g0138811 | 24.682 | 393 | 212 | 13 | 15 | 341 | 13 | 387 | 4.73e-23 | 99.0 |
| Msa1330450 | MtrunA17_Chr8g0339871 | 29.461 | 241 | 103 | 9 | 158 | 338 | 4 | 237 | 1.37e-18 | 84.0 |
| Msa1330450 | MtrunA17_Chr8g0353931 | 31.707 | 164 | 100 | 5 | 44 | 202 | 47 | 203 | 3.20e-17 | 79.3 |
| Msa1330450 | MtrunA17_Chr3g0135451 | 42.149 | 121 | 46 | 5 | 32 | 133 | 45 | 160 | 1.22e-16 | 77.4 |
| Msa1330450 | MtrunA17_Chr8g0391201 | 25.630 | 238 | 116 | 7 | 157 | 338 | 3 | 235 | 1.12e-15 | 75.5 |
| Msa1330450 | MtrunA17_Chr2g0302651 | 31.220 | 205 | 87 | 11 | 179 | 338 | 1 | 196 | 1.81e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330450 | AT5G50150.1 | 68.000 | 350 | 59 | 4 | 46 | 344 | 73 | 420 | 1.08e-169 | 479 |
| Msa1330450 | AT1G70550.1 | 65.517 | 348 | 70 | 2 | 46 | 344 | 119 | 465 | 4.98e-166 | 471 |
| Msa1330450 | AT1G23340.2 | 63.401 | 347 | 77 | 2 | 47 | 344 | 64 | 409 | 6.79e-163 | 461 |
| Msa1330450 | AT1G23340.1 | 63.401 | 347 | 77 | 2 | 47 | 344 | 64 | 409 | 6.79e-163 | 461 |
| Msa1330450 | AT1G10750.1 | 61.782 | 348 | 83 | 2 | 46 | 344 | 121 | 467 | 8.05e-158 | 451 |
| Msa1330450 | AT3G13510.1 | 47.802 | 364 | 124 | 7 | 46 | 344 | 57 | 419 | 4.47e-114 | 337 |
| Msa1330450 | AT1G55360.1 | 46.825 | 378 | 130 | 8 | 33 | 344 | 50 | 422 | 7.11e-114 | 337 |
| Msa1330450 | AT5G18460.1 | 48.352 | 364 | 122 | 7 | 46 | 343 | 66 | 429 | 2.60e-111 | 331 |
| Msa1330450 | AT5G56530.2 | 46.849 | 365 | 128 | 6 | 44 | 343 | 56 | 419 | 2.72e-110 | 328 |
| Msa1330450 | AT5G56530.1 | 46.849 | 365 | 128 | 6 | 44 | 343 | 56 | 419 | 2.72e-110 | 328 |
| Msa1330450 | AT2G44210.2 | 42.476 | 412 | 157 | 8 | 1 | 344 | 46 | 445 | 1.20e-100 | 304 |
| Msa1330450 | AT2G44210.1 | 44.444 | 369 | 136 | 7 | 44 | 344 | 48 | 415 | 2.79e-100 | 302 |
| Msa1330450 | AT1G70550.2 | 76.437 | 174 | 40 | 1 | 46 | 219 | 119 | 291 | 3.62e-96 | 287 |
| Msa1330450 | AT1G23340.3 | 73.988 | 173 | 44 | 1 | 47 | 219 | 64 | 235 | 5.24e-93 | 280 |
| Msa1330450 | AT2G44220.1 | 43.333 | 360 | 140 | 8 | 44 | 344 | 49 | 403 | 1.58e-91 | 279 |
| Msa1330450 | AT2G44240.1 | 40.503 | 358 | 152 | 8 | 44 | 344 | 49 | 402 | 5.33e-81 | 252 |
| Msa1330450 | AT2G17750.1 | 37.640 | 356 | 162 | 8 | 44 | 343 | 44 | 395 | 1.82e-80 | 251 |
| Msa1330450 | AT2G19360.1 | 38.522 | 379 | 152 | 10 | 44 | 343 | 49 | 425 | 2.21e-78 | 246 |
| Msa1330450 | AT1G10750.2 | 68.125 | 160 | 50 | 1 | 47 | 206 | 122 | 280 | 3.45e-76 | 238 |
| Msa1330450 | AT3G48230.1 | 37.760 | 384 | 166 | 11 | 23 | 344 | 1 | 373 | 2.61e-74 | 234 |
| Msa1330450 | AT2G44250.1 | 38.889 | 360 | 157 | 10 | 44 | 343 | 52 | 408 | 1.06e-69 | 223 |
| Msa1330450 | AT5G19170.1 | 35.372 | 376 | 172 | 9 | 20 | 338 | 4 | 365 | 8.01e-68 | 218 |
| Msa1330450 | AT2G44250.2 | 37.117 | 326 | 142 | 10 | 78 | 343 | 3 | 325 | 2.54e-55 | 184 |
| Msa1330450 | AT5G25950.1 | 30.303 | 363 | 173 | 9 | 59 | 344 | 73 | 432 | 3.82e-46 | 162 |
| Msa1330450 | AT5G25960.1 | 28.655 | 342 | 150 | 8 | 59 | 344 | 54 | 357 | 1.19e-39 | 144 |
| Msa1330450 | AT2G20170.1 | 30.595 | 353 | 181 | 11 | 44 | 338 | 50 | 396 | 1.21e-38 | 142 |
| Msa1330450 | AT2G20170.2 | 30.595 | 353 | 181 | 11 | 44 | 338 | 50 | 396 | 1.21e-38 | 142 |
| Msa1330450 | AT2G20170.3 | 31.045 | 335 | 186 | 11 | 44 | 338 | 50 | 379 | 6.06e-37 | 137 |
| Msa1330450 | AT4G23390.1 | 30.899 | 356 | 176 | 16 | 44 | 338 | 51 | 397 | 1.82e-34 | 130 |
| Msa1330450 | AT4G23370.1 | 30.556 | 360 | 177 | 15 | 44 | 338 | 50 | 401 | 3.07e-32 | 124 |
| Msa1330450 | AT4G23380.1 | 28.902 | 346 | 180 | 14 | 51 | 338 | 61 | 398 | 8.59e-32 | 123 |
| Msa1330450 | AT4G23355.1 | 27.887 | 355 | 187 | 13 | 44 | 338 | 53 | 398 | 1.26e-31 | 123 |
| Msa1330450 | AT4G23365.1 | 28.367 | 349 | 181 | 15 | 50 | 338 | 59 | 398 | 2.93e-31 | 122 |
| Msa1330450 | AT4G23360.1 | 28.090 | 356 | 186 | 14 | 44 | 338 | 53 | 399 | 3.98e-31 | 121 |
| Msa1330450 | AT2G35250.1 | 29.167 | 360 | 159 | 14 | 43 | 341 | 16 | 340 | 1.76e-27 | 110 |
| Msa1330450 | AT1G10190.1 | 29.006 | 362 | 167 | 16 | 46 | 338 | 54 | 394 | 1.97e-27 | 111 |
| Msa1330450 | AT4G15050.1 | 28.969 | 359 | 171 | 17 | 46 | 338 | 54 | 394 | 3.45e-27 | 110 |
| Msa1330450 | AT4G23350.1 | 26.257 | 358 | 191 | 14 | 44 | 338 | 53 | 400 | 5.14e-27 | 110 |
| Msa1330450 | AT4G23373.1 | 30.363 | 303 | 153 | 15 | 44 | 338 | 50 | 302 | 3.63e-26 | 106 |
| Msa1330450 | AT5G25410.1 | 25.469 | 373 | 212 | 13 | 16 | 338 | 7 | 363 | 1.65e-21 | 94.7 |
| Msa1330450 | AT4G17505.1 | 24.390 | 369 | 172 | 12 | 30 | 344 | 6 | 321 | 3.65e-21 | 92.8 |
| Msa1330450 | AT5G60380.1 | 25.519 | 337 | 186 | 12 | 54 | 338 | 44 | 367 | 1.82e-20 | 91.7 |
| Msa1330450 | AT4G15053.1 | 26.997 | 363 | 176 | 16 | 46 | 338 | 58 | 401 | 1.96e-20 | 92.0 |
| Msa1330450 | AT2G03930.2 | 53.165 | 79 | 35 | 2 | 143 | 219 | 40 | 118 | 3.54e-20 | 86.7 |
| Msa1330450 | AT2G27320.1 | 28.378 | 296 | 131 | 11 | 53 | 295 | 30 | 297 | 3.56e-19 | 87.4 |
| Msa1330450 | AT4G10220.1 | 25.356 | 351 | 188 | 14 | 46 | 338 | 64 | 398 | 2.00e-18 | 85.9 |
| Msa1330450 | AT5G05030.1 | 24.800 | 375 | 211 | 12 | 19 | 340 | 3 | 359 | 2.44e-18 | 85.5 |
| Msa1330450 | AT2G24950.1 | 24.294 | 354 | 183 | 14 | 50 | 338 | 76 | 409 | 3.13e-18 | 85.5 |
| Msa1330450 | AT5G46810.1 | 23.944 | 355 | 184 | 14 | 54 | 338 | 11 | 349 | 3.76e-16 | 79.0 |
| Msa1330450 | AT2G38255.1 | 29.341 | 167 | 95 | 6 | 54 | 219 | 14 | 158 | 4.16e-15 | 73.9 |
| Msa1330450 | AT4G17860.1 | 25.072 | 347 | 174 | 15 | 54 | 338 | 29 | 351 | 1.70e-14 | 73.9 |
| Msa1330450 | AT5G46820.1 | 22.989 | 348 | 188 | 13 | 54 | 338 | 17 | 347 | 3.33e-14 | 73.2 |
| Msa1330450 | AT5G11660.1 | 24.653 | 288 | 158 | 7 | 104 | 340 | 25 | 304 | 9.08e-14 | 71.6 |
| Msa1330450 | AT5G37520.1 | 33.333 | 123 | 72 | 5 | 220 | 339 | 83 | 198 | 1.31e-11 | 63.5 |
| Msa1330450 | AT5G04937.1 | 26.633 | 199 | 98 | 6 | 182 | 338 | 6 | 198 | 2.43e-11 | 62.8 |
Find 81 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCAAGATTCTTTACTTAT+TGG | 0.143563 | 8_4:-49604396 | Msa1330450:CDS |
| AATTCAGCTTATCACAAATA+TGG | 0.173753 | 8_4:-49604630 | Msa1330450:CDS |
| TTAGAGACACTTTGTTATTA+AGG | 0.216561 | 8_4:-49602235 | Msa1330450:three_prime_UTR |
| CCATTGTTGTTATACCCTTT+TGG | 0.234746 | 8_4:+49605174 | None:intergenic |
| AGCCACCAATGTCCATGTTT+TGG | 0.238090 | 8_4:+49602733 | None:intergenic |
| GGACATTGGTGGCTTGAATT+TGG | 0.240872 | 8_4:-49602724 | Msa1330450:CDS |
| GAATAGGTGATAGAGTATTT+AGG | 0.242438 | 8_4:+49605781 | None:intergenic |
| TTTCAGCTTTGGATTGATTC+TGG | 0.261074 | 8_4:-49605132 | Msa1330450:CDS |
| AATAGGTGATAGAGTATTTA+GGG | 0.276864 | 8_4:+49605782 | None:intergenic |
| TGTTCTGTTGTTCTTCTGAT+TGG | 0.281618 | 8_4:+49605084 | None:intergenic |
| GCAAGCTCTATAAGAAGATT+TGG | 0.288015 | 8_4:-49605048 | Msa1330450:CDS |
| GAAACTTACAAGTAGTTGAT+TGG | 0.334217 | 8_4:-49602522 | Msa1330450:CDS |
| ACTATGGGGTGTGACAAAAT+TGG | 0.336408 | 8_4:+49605714 | None:intergenic |
| AAGAGGGAAGAAATAATGTT+TGG | 0.337838 | 8_4:-49602432 | Msa1330450:CDS |
| CAACAAATAACTTTCAGCTT+TGG | 0.338340 | 8_4:-49605143 | Msa1330450:CDS |
| TGGGTTATTGCTGGATCATT+TGG | 0.338863 | 8_4:-49604610 | Msa1330450:CDS |
| CTGATTGGAACAGTTCCTTT+AGG | 0.345024 | 8_4:+49605099 | None:intergenic |
| CATGCAAGCATGGTACAATT+TGG | 0.347198 | 8_4:-49602646 | Msa1330450:CDS |
| TAGTACCAATAATTTGTTCA+TGG | 0.361328 | 8_4:+49602364 | None:intergenic |
| GTGAATGGAGAACAATACTA+TGG | 0.379067 | 8_4:-49604703 | Msa1330450:CDS |
| AGAGGGAAGAAATAATGTTT+GGG | 0.379333 | 8_4:-49602431 | Msa1330450:CDS |
| GTCCAATAAGTAAAGAATCT+TGG | 0.392009 | 8_4:+49604394 | None:intergenic |
| GATGTCCATGAACAAATTAT+TGG | 0.396912 | 8_4:-49602369 | Msa1330450:exon |
| TCACAAATATGGGTTATTGC+TGG | 0.398889 | 8_4:-49604619 | Msa1330450:CDS |
| TGATAGAGTATTTAGGGAAG+TGG | 0.402633 | 8_4:+49605788 | None:intergenic |
| GGACATCTCACATTCCTTCC+AGG | 0.406112 | 8_4:+49602385 | None:intergenic |
| ATTCAGCTTATCACAAATAT+GGG | 0.416844 | 8_4:-49604629 | Msa1330450:CDS |
| TCTATCAAATATTCACCAAT+TGG | 0.419630 | 8_4:-49602482 | Msa1330450:CDS |
| TGGTGGCTTGAATTTGGATC+AGG | 0.431677 | 8_4:-49602718 | Msa1330450:CDS |
| AAACTTACAAGTAGTTGATT+GGG | 0.432328 | 8_4:-49602521 | Msa1330450:CDS |
| CTATCACACTGGCACACAAA+TGG | 0.436821 | 8_4:-49602593 | Msa1330450:CDS |
| CAATCTATCAAATCTCCATC+TGG | 0.438180 | 8_4:+49605406 | None:intergenic |
| CAGGTAAGCCCTGAGTTATA+TGG | 0.438336 | 8_4:-49604427 | Msa1330450:CDS |
| TTTGGATCAGGTCTACTAGT+TGG | 0.445858 | 8_4:-49602706 | Msa1330450:CDS |
| GAGTCTCTCCGTACACCTCT+TGG | 0.457148 | 8_4:+49605018 | None:intergenic |
| AAGTGACTAAACAAGTTTGC+TGG | 0.458245 | 8_4:+49602676 | None:intergenic |
| AGTTGAATTAGAGACAACTA+TGG | 0.460292 | 8_4:+49605698 | None:intergenic |
| CAGGTCTACTAGTTGGATAT+TGG | 0.467184 | 8_4:-49602699 | Msa1330450:CDS |
| AATTTGAATGATCAGCCAAT+TGG | 0.483000 | 8_4:+49602467 | None:intergenic |
| GATCCACCAGAAAGGCCAAA+AGG | 0.485021 | 8_4:-49605189 | Msa1330450:CDS |
| AATTGGTGAATATTTGATAG+AGG | 0.492967 | 8_4:+49602484 | None:intergenic |
| TACATTAGAAGCTGGATGGC+AGG | 0.503606 | 8_4:-49604575 | Msa1330450:intron |
| TATCACACTGGCACACAAAT+GGG | 0.504038 | 8_4:-49602592 | Msa1330450:CDS |
| TCATATTGATCGGTTACCCT+TGG | 0.505272 | 8_4:+49604652 | None:intergenic |
| TGACAAAATTGGACTAATTG+AGG | 0.509869 | 8_4:+49605725 | None:intergenic |
| CGGAGAGACTCAACAGGCTC+TGG | 0.513385 | 8_4:-49605006 | Msa1330450:CDS |
| TTTGTCCTTTGAGTAGTGGA+TGG | 0.513451 | 8_4:+49605353 | None:intergenic |
| TTGAGAAGTACATAGTAAGT+AGG | 0.514745 | 8_4:+49602173 | None:intergenic |
| TAATTATCACCATATAACTC+AGG | 0.519613 | 8_4:+49604418 | None:intergenic |
| GATCTTAATACATTAGAAGC+TGG | 0.523264 | 8_4:-49604583 | Msa1330450:CDS |
| TAAGCTGAATTCATATTGAT+CGG | 0.544350 | 8_4:+49604642 | None:intergenic |
| ATCCACCAGAAAGGCCAAAA+GGG | 0.545730 | 8_4:-49605188 | Msa1330450:CDS |
| TCTGGTGAAGAATGTCCTAA+AGG | 0.548240 | 8_4:-49605114 | Msa1330450:CDS |
| CTTGAGAAGTCATGCAAGCA+TGG | 0.552648 | 8_4:-49602656 | Msa1330450:CDS |
| GTTGAATTAGAGACAACTAT+GGG | 0.552946 | 8_4:+49605699 | None:intergenic |
| GGTGTACGGAGAGACTCAAC+AGG | 0.565498 | 8_4:-49605012 | Msa1330450:CDS |
| GCAAGCATGGTACAATTTGG+AGG | 0.566205 | 8_4:-49602643 | Msa1330450:CDS |
| GAAGAAAACCAAGAGGTGTA+CGG | 0.572169 | 8_4:-49605026 | Msa1330450:CDS |
| CTCAACAGGCTCTGGTCATG+AGG | 0.573940 | 8_4:-49604998 | Msa1330450:intron |
| AAATTGCTATGATATAAAAG+AGG | 0.574299 | 8_4:-49602449 | Msa1330450:CDS |
| ACTGGCACACAAATGGGAAG+TGG | 0.576010 | 8_4:-49602586 | Msa1330450:CDS |
| ATTGTGAATTCACGTTCAAG+AGG | 0.577166 | 8_4:-49602616 | Msa1330450:CDS |
| TGTACTATAAACTTGAAGAT+CGG | 0.585474 | 8_4:-49602124 | None:intergenic |
| GCATAAATGTGTGGACACCA+AGG | 0.586207 | 8_4:-49604669 | Msa1330450:CDS |
| ACCCAAAACATGGACATTGG+TGG | 0.589771 | 8_4:-49602735 | Msa1330450:CDS |
| AATTGCTATGATATAAAAGA+GGG | 0.589945 | 8_4:-49602448 | Msa1330450:CDS |
| AGTAGTGGATGGTCAAAAGC+TGG | 0.592451 | 8_4:+49605364 | None:intergenic |
| TTTATTATGGAGGTCCTGGA+AGG | 0.592575 | 8_4:-49602399 | Msa1330450:CDS |
| TATGTATAGGACCCAAAACA+TGG | 0.593710 | 8_4:-49602745 | Msa1330450:intron |
| TTAATACATTAGAAGCTGGA+TGG | 0.602287 | 8_4:-49604579 | Msa1330450:CDS |
| GTTTACAGGATCCACCAGAA+AGG | 0.603971 | 8_4:-49605197 | Msa1330450:intron |
| CCAAAAGGGTATAACAACAA+TGG | 0.605463 | 8_4:-49605174 | Msa1330450:CDS |
| AATTATCACCATATAACTCA+GGG | 0.622824 | 8_4:+49604419 | None:intergenic |
| TTTGACCATCCACTACTCAA+AGG | 0.626511 | 8_4:-49605358 | Msa1330450:CDS |
| AGGACCCAAAACATGGACAT+TGG | 0.633661 | 8_4:-49602738 | Msa1330450:CDS |
| CATAAATGTGTGGACACCAA+GGG | 0.646212 | 8_4:-49604668 | Msa1330450:CDS |
| CGTTCAAGAGGCTATCACAC+TGG | 0.646366 | 8_4:-49602604 | Msa1330450:CDS |
| GAGGGAAGAAATAATGTTTG+GGG | 0.648601 | 8_4:-49602430 | Msa1330450:CDS |
| CAAAAGCAAGCATAAATGTG+TGG | 0.653308 | 8_4:-49604678 | Msa1330450:CDS |
| AGATTTGGAAGAAAACCAAG+AGG | 0.740571 | 8_4:-49605033 | Msa1330450:CDS |
| TTGAATTAGAGACAACTATG+GGG | 0.750435 | 8_4:+49605700 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAAAATTTGTATATTAT+AGG | + | chr8_4:49602969-49602988 | None:intergenic | 10.0% |
| !!! | AAATTTTTACTATTTGTTAA+TGG | - | chr8_4:49602978-49602997 | Msa1330450:intron | 10.0% |
| !! | TATGGTAAAAAAAAAAAAAA+AGG | + | chr8_4:49603816-49603835 | None:intergenic | 10.0% |
| !! | AATTATAAAAAGTTAAGTAA+GGG | + | chr8_4:49604602-49604621 | None:intergenic | 10.0% |
| !! | AAATTATAAAAAGTTAAGTA+AGG | + | chr8_4:49604603-49604622 | None:intergenic | 10.0% |
| !! | TCCAAAAATATTATTAAAAA+AGG | - | chr8_4:49604635-49604654 | Msa1330450:CDS | 10.0% |
| !!! | ACCTTTTTTAATAATATTTT+TGG | + | chr8_4:49604639-49604658 | None:intergenic | 10.0% |
| !!! | TTTTATCATAGTCTTAAAAA+AGG | - | chr8_4:49602636-49602655 | Msa1330450:CDS | 15.0% |
| !! | TTTATTAAAGCAATATTTCA+CGG | - | chr8_4:49604503-49604522 | Msa1330450:intron | 15.0% |
| !! | ATTATAAAAAGTTAAGTAAG+GGG | + | chr8_4:49604601-49604620 | None:intergenic | 15.0% |
| !!! | TACTATGTATTTTTATGTAT+AGG | - | chr8_4:49605171-49605190 | Msa1330450:CDS | 15.0% |
| !! | TTAGCAAAAAAACAAAATTA+TGG | + | chr8_4:49605670-49605689 | None:intergenic | 15.0% |
| !! | TATGATAAAACATGTTACAT+TGG | + | chr8_4:49602626-49602645 | None:intergenic | 20.0% |
| !! | TGAAATTCAATATTGAACTT+TGG | + | chr8_4:49603042-49603061 | None:intergenic | 20.0% |
| !! | TTCAAAACTAAAAACATTGA+AGG | - | chr8_4:49603058-49603077 | Msa1330450:intron | 20.0% |
| !! | TCAAAACTAAAAACATTGAA+GGG | - | chr8_4:49603059-49603078 | Msa1330450:intron | 20.0% |
| !! | TCTTCAAAATATTTGAATAG+TGG | + | chr8_4:49603432-49603451 | None:intergenic | 20.0% |
| !! | TCATATTTCAATTTGATAGA+CGG | - | chr8_4:49603633-49603652 | Msa1330450:intron | 20.0% |
| !! | GATTTATTCAAACAAACAAT+AGG | - | chr8_4:49603698-49603717 | Msa1330450:intron | 20.0% |
| !! | TCTAAAAAATTTAGTTGTGT+CGG | + | chr8_4:49603901-49603920 | None:intergenic | 20.0% |
| !!! | CAAACTTTTTCAATTCTTAA+TGG | + | chr8_4:49604330-49604349 | None:intergenic | 20.0% |
| !! | GTGAAATATTGCTTTAATAA+AGG | + | chr8_4:49604504-49604523 | None:intergenic | 20.0% |
| !!! | AGCTTTGATGTTAATTATTT+AGG | + | chr8_4:49604578-49604597 | None:intergenic | 20.0% |
| !! | ATTAATTAATTGACCCATAA+GGG | - | chr8_4:49604682-49604701 | Msa1330450:CDS | 20.0% |
| !!! | TGTTTATACTTTGAAAACTA+TGG | + | chr8_4:49604773-49604792 | None:intergenic | 20.0% |
| !!! | ATTTTTGTATTATGCAACTA+TGG | - | chr8_4:49604871-49604890 | Msa1330450:intron | 20.0% |
| !!! | ACTTTTTTTTTTCACGAAAA+TGG | - | chr8_4:49604918-49604937 | Msa1330450:intron | 20.0% |
| !! | AAATTGCTATGATATAAAAG+AGG | - | chr8_4:49605480-49605499 | Msa1330450:intron | 20.0% |
| !! | AATTGCTATGATATAAAAGA+GGG | - | chr8_4:49605481-49605500 | Msa1330450:intron | 20.0% |
| !! | CCAAAAGAAAAAAAAAAAGT+GGG | + | chr8_4:49605639-49605658 | None:intergenic | 20.0% |
| !!! | CCACTTTTTTTTTTTCTTTT+GGG | - | chr8_4:49605637-49605656 | Msa1330450:intron | 20.0% |
| !! | AATAGGTGATAGAGTATTTA+GGG | + | chr8_4:49602150-49602169 | None:intergenic | 25.0% |
| ! | GTAACAAAAACATGTAGAAT+AGG | + | chr8_4:49602167-49602186 | None:intergenic | 25.0% |
| ! | TCTAAAAGTTTGGTTAGAAT+TGG | + | chr8_4:49602279-49602298 | None:intergenic | 25.0% |
| ! | GATGAAAATGTAATTACCAA+TGG | + | chr8_4:49602604-49602623 | None:intergenic | 25.0% |
| !! | ATAGTCTTAAAAAAGGACTA+AGG | - | chr8_4:49602643-49602662 | Msa1330450:CDS | 25.0% |
| ! | GAATTGAATTTAAGAGTAAG+AGG | - | chr8_4:49602703-49602722 | Msa1330450:CDS | 25.0% |
| !!! | GATTTTGATGTCACTTTTTT+AGG | + | chr8_4:49603115-49603134 | None:intergenic | 25.0% |
| ! | AAAAAAATTCCATTAAGAGC+TGG | - | chr8_4:49603142-49603161 | Msa1330450:intron | 25.0% |
| ! | TAAGCTGAATTCATATTGAT+CGG | + | chr8_4:49603290-49603309 | None:intergenic | 25.0% |
| ! | AATTCAGCTTATCACAAATA+TGG | - | chr8_4:49603299-49603318 | Msa1330450:intron | 25.0% |
| ! | ATTCAGCTTATCACAAATAT+GGG | - | chr8_4:49603300-49603319 | Msa1330450:intron | 25.0% |
| !! | AATAGCATGTATTTTCTTAC+AGG | - | chr8_4:49603483-49603502 | Msa1330450:intron | 25.0% |
| ! | AATTATCACCATATAACTCA+GGG | + | chr8_4:49603513-49603532 | None:intergenic | 25.0% |
| ! | TAATTATCACCATATAACTC+AGG | + | chr8_4:49603514-49603533 | None:intergenic | 25.0% |
| ! | ATCCAAGATTCTTTACTTAT+TGG | - | chr8_4:49603533-49603552 | Msa1330450:intron | 25.0% |
| ! | TGTTACAATTTACTATGTTC+TGG | - | chr8_4:49603676-49603695 | Msa1330450:intron | 25.0% |
| ! | AATGGAAGACAATTTGATAT+TGG | - | chr8_4:49603760-49603779 | Msa1330450:intron | 25.0% |
| !!! | TTGATATTGGCTTAATGATT+TGG | - | chr8_4:49603773-49603792 | Msa1330450:intron | 25.0% |
| ! | TTACCATAAGATACTTTACT+TGG | - | chr8_4:49603828-49603847 | Msa1330450:intron | 25.0% |
| !! | ATACCAAGTAAAGTATCTTA+TGG | + | chr8_4:49603834-49603853 | None:intergenic | 25.0% |
| ! | TTTAGTGTAATTATACGTGT+CGG | - | chr8_4:49603932-49603951 | Msa1330450:intron | 25.0% |
| ! | ATACAAATTATTGCTTCACT+TGG | + | chr8_4:49604356-49604375 | None:intergenic | 25.0% |
| !! | TTGTGTTAGTGTTATTCAAA+TGG | - | chr8_4:49604410-49604429 | Msa1330450:CDS | 25.0% |
| !!! | AACTCATTGCTTTTTAACAT+TGG | - | chr8_4:49604528-49604547 | Msa1330450:intron | 25.0% |
| ! | CATTAATTAATTGACCCATA+AGG | - | chr8_4:49604681-49604700 | Msa1330450:CDS | 25.0% |
| ! | TTAATTAATTGACCCATAAG+GGG | - | chr8_4:49604683-49604702 | Msa1330450:CDS | 25.0% |
| ! | ACCATTGAATCTATATTAGA+CGG | + | chr8_4:49605080-49605099 | None:intergenic | 25.0% |
| !! | TATTATAGCTTGTGTTCAAA+GGG | + | chr8_4:49605149-49605168 | None:intergenic | 25.0% |
| !! | ATATTATAGCTTGTGTTCAA+AGG | + | chr8_4:49605150-49605169 | None:intergenic | 25.0% |
| ! | AAACTTACAAGTAGTTGATT+GGG | - | chr8_4:49605408-49605427 | Msa1330450:CDS | 25.0% |
| ! | AATTGGTGAATATTTGATAG+AGG | + | chr8_4:49605448-49605467 | None:intergenic | 25.0% |
| ! | TCTATCAAATATTCACCAAT+TGG | - | chr8_4:49605447-49605466 | Msa1330450:intron | 25.0% |
| !!! | TGGGGAACTTATTTTTATTA+TGG | - | chr8_4:49605517-49605536 | Msa1330450:intron | 25.0% |
| !!! | GGAACTTATTTTTATTATGG+AGG | - | chr8_4:49605520-49605539 | Msa1330450:intron | 25.0% |
| !!! | TAGTACCAATAATTTGTTCA+TGG | + | chr8_4:49605568-49605587 | None:intergenic | 25.0% |
| !!! | CCCACTTTTTTTTTTTCTTT+TGG | - | chr8_4:49605636-49605655 | Msa1330450:intron | 25.0% |
| ! | CCCAAAAGAAAAAAAAAAAG+TGG | + | chr8_4:49605640-49605659 | None:intergenic | 25.0% |
| !!! | TTAGAGACACTTTGTTATTA+AGG | - | chr8_4:49605694-49605713 | Msa1330450:CDS | 25.0% |
| ! | GAATAGGTGATAGAGTATTT+AGG | + | chr8_4:49602151-49602170 | None:intergenic | 30.0% |
| TGACAAAATTGGACTAATTG+AGG | + | chr8_4:49602207-49602226 | None:intergenic | 30.0% | |
| TTGAATTAGAGACAACTATG+GGG | + | chr8_4:49602232-49602251 | None:intergenic | 30.0% | |
| GTTGAATTAGAGACAACTAT+GGG | + | chr8_4:49602233-49602252 | None:intergenic | 30.0% | |
| AGTTGAATTAGAGACAACTA+TGG | + | chr8_4:49602234-49602253 | None:intergenic | 30.0% | |
| AATTTATGCAATGCAACATC+TGG | + | chr8_4:49602302-49602321 | None:intergenic | 30.0% | |
| AATGCCTTAATTGTCTTGAT+GGG | + | chr8_4:49602365-49602384 | None:intergenic | 30.0% | |
| AAATGCCTTAATTGTCTTGA+TGG | + | chr8_4:49602366-49602385 | None:intergenic | 30.0% | |
| ATTTAAGAGTAAGAGGCTTA+AGG | - | chr8_4:49602710-49602729 | Msa1330450:CDS | 30.0% | |
| CAACAAATAACTTTCAGCTT+TGG | - | chr8_4:49602786-49602805 | Msa1330450:intron | 30.0% | |
| !!! | TGTCACTTTTTTAGGCAAAT+AGG | + | chr8_4:49603107-49603126 | None:intergenic | 30.0% |
| !!! | AGTTTTTTTCCAGCTCTTAA+TGG | + | chr8_4:49603154-49603173 | None:intergenic | 30.0% |
| GATCTTAATACATTAGAAGC+TGG | - | chr8_4:49603346-49603365 | Msa1330450:intron | 30.0% | |
| TTAATACATTAGAAGCTGGA+TGG | - | chr8_4:49603350-49603369 | Msa1330450:intron | 30.0% | |
| GTCCAATAAGTAAAGAATCT+TGG | + | chr8_4:49603538-49603557 | None:intergenic | 30.0% | |
| AAGAAAGAACTTAGAAGCAA+AGG | + | chr8_4:49603590-49603609 | None:intergenic | 30.0% | |
| ACAAACAATAGGATAGCAAT+AGG | - | chr8_4:49603709-49603728 | Msa1330450:intron | 30.0% | |
| CAAACAATAGGATAGCAATA+GGG | - | chr8_4:49603710-49603729 | Msa1330450:intron | 30.0% | |
| AAACAATAGGATAGCAATAG+GGG | - | chr8_4:49603711-49603730 | Msa1330450:intron | 30.0% | |
| ACCTAAATTACTCACACAAA+AGG | - | chr8_4:49604189-49604208 | Msa1330450:intron | 30.0% | |
| ACAAAAAAAGTTAAGCAAGC+AGG | - | chr8_4:49604298-49604317 | Msa1330450:intron | 30.0% | |
| GACACTAATGTTCTTATGTT+GGG | - | chr8_4:49604705-49604724 | Msa1330450:CDS | 30.0% | |
| ATTTGAGAGAATGAGATACA+GGG | + | chr8_4:49604740-49604759 | None:intergenic | 30.0% | |
| AATTTGAGAGAATGAGATAC+AGG | + | chr8_4:49604741-49604760 | None:intergenic | 30.0% | |
| !! | TTACTAGTCTTAGGATGATT+TGG | + | chr8_4:49604839-49604858 | None:intergenic | 30.0% |
| ACCGTCTAATATAGATTCAA+TGG | - | chr8_4:49605076-49605095 | Msa1330450:CDS | 30.0% | |
| TTCAAAGGGATCAAGATTAA+TGG | + | chr8_4:49605135-49605154 | None:intergenic | 30.0% | |
| GAAACTTACAAGTAGTTGAT+TGG | - | chr8_4:49605407-49605426 | Msa1330450:CDS | 30.0% | |
| AATTTGAATGATCAGCCAAT+TGG | + | chr8_4:49605465-49605484 | None:intergenic | 30.0% | |
| AAGAGGGAAGAAATAATGTT+TGG | - | chr8_4:49605497-49605516 | Msa1330450:intron | 30.0% | |
| AGAGGGAAGAAATAATGTTT+GGG | - | chr8_4:49605498-49605517 | Msa1330450:intron | 30.0% | |
| !! | TATTTTTATTATGGAGGTCC+TGG | - | chr8_4:49605526-49605545 | Msa1330450:intron | 30.0% |
| GATGTCCATGAACAAATTAT+TGG | - | chr8_4:49605560-49605579 | Msa1330450:intron | 30.0% | |
| ! | TTGAGAAGTACATAGTAAGT+AGG | + | chr8_4:49605759-49605778 | None:intergenic | 30.0% |
| ! | TGATAGAGTATTTAGGGAAG+TGG | + | chr8_4:49602144-49602163 | None:intergenic | 35.0% |
| CAACATCTGGTCTAAAAGTT+TGG | + | chr8_4:49602289-49602308 | None:intergenic | 35.0% | |
| ATTCACATCACTGAATCACA+AGG | + | chr8_4:49602475-49602494 | None:intergenic | 35.0% | |
| TGTGATTCAGTGATGTGAAT+TGG | - | chr8_4:49602475-49602494 | Msa1330450:CDS | 35.0% | |
| CAATCTATCAAATCTCCATC+TGG | + | chr8_4:49602526-49602545 | None:intergenic | 35.0% | |
| ACTCAAAGGACAAAAACCAT+TGG | - | chr8_4:49602585-49602604 | Msa1330450:CDS | 35.0% | |
| !! | CCATTGTTGTTATACCCTTT+TGG | + | chr8_4:49602758-49602777 | None:intergenic | 35.0% |
| ! | CCAAAAGGGTATAACAACAA+TGG | - | chr8_4:49602755-49602774 | Msa1330450:intron | 35.0% |
| !! | TTTCAGCTTTGGATTGATTC+TGG | - | chr8_4:49602797-49602816 | Msa1330450:intron | 35.0% |
| TGTTCTGTTGTTCTTCTGAT+TGG | + | chr8_4:49602848-49602867 | None:intergenic | 35.0% | |
| GCAAGCTCTATAAGAAGATT+TGG | - | chr8_4:49602881-49602900 | Msa1330450:intron | 35.0% | |
| AGATTTGGAAGAAAACCAAG+AGG | - | chr8_4:49602896-49602915 | Msa1330450:intron | 35.0% | |
| !!! | CACTTTTTTAGGCAAATAGG+AGG | + | chr8_4:49603104-49603123 | None:intergenic | 35.0% |
| !!! | CATGCAGTTGTTTTTGTGAA+TGG | - | chr8_4:49603211-49603230 | Msa1330450:intron | 35.0% |
| GTGAATGGAGAACAATACTA+TGG | - | chr8_4:49603226-49603245 | Msa1330450:intron | 35.0% | |
| CAAAAGCAAGCATAAATGTG+TGG | - | chr8_4:49603251-49603270 | Msa1330450:intron | 35.0% | |
| ! | TCACAAATATGGGTTATTGC+TGG | - | chr8_4:49603310-49603329 | Msa1330450:intron | 35.0% |
| TCTCCAAGATCGTTCTATAA+TGG | - | chr8_4:49603742-49603761 | Msa1330450:intron | 35.0% | |
| CTTCCATTATAGAACGATCT+TGG | + | chr8_4:49603748-49603767 | None:intergenic | 35.0% | |
| TAATACCAAGCTATGAAGCA+TGG | + | chr8_4:49604021-49604040 | None:intergenic | 35.0% | |
| TCAATGTCACAAAGACATAC+TGG | - | chr8_4:49604042-49604061 | Msa1330450:intron | 35.0% | |
| GACATACTGGCATTTGTAAT+TGG | - | chr8_4:49604055-49604074 | Msa1330450:intron | 35.0% | |
| ! | GCCTTTTGTGTGAGTAATTT+AGG | + | chr8_4:49604193-49604212 | None:intergenic | 35.0% |
| ACACAAAAGGCTTAATGCTT+TGG | - | chr8_4:49604202-49604221 | Msa1330450:intron | 35.0% | |
| ! | AAGGCTTAATGCTTTGGATT+TGG | - | chr8_4:49604208-49604227 | Msa1330450:intron | 35.0% |
| ! | CTTAATGCTTTGGATTTGGA+AGG | - | chr8_4:49604212-49604231 | Msa1330450:intron | 35.0% |
| TATTCAAATGGAAGATTCCC+TGG | - | chr8_4:49604422-49604441 | Msa1330450:CDS | 35.0% | |
| GGACACTAATGTTCTTATGT+TGG | - | chr8_4:49604704-49604723 | Msa1330450:CDS | 35.0% | |
| ! | TAGTCTTAGGATGATTTGGA+TGG | + | chr8_4:49604835-49604854 | None:intergenic | 35.0% |
| TATGTATAGGACCCAAAACA+TGG | - | chr8_4:49605184-49605203 | Msa1330450:CDS | 35.0% | |
| AAGTGACTAAACAAGTTTGC+TGG | + | chr8_4:49605256-49605275 | None:intergenic | 35.0% | |
| ATTGTGAATTCACGTTCAAG+AGG | - | chr8_4:49605313-49605332 | Msa1330450:intron | 35.0% | |
| GAGGGAAGAAATAATGTTTG+GGG | - | chr8_4:49605499-49605518 | Msa1330450:intron | 35.0% | |
| ACTATGGGGTGTGACAAAAT+TGG | + | chr8_4:49602218-49602237 | None:intergenic | 40.0% | |
| TTTGACCATCCACTACTCAA+AGG | - | chr8_4:49602571-49602590 | Msa1330450:CDS | 40.0% | |
| ! | TTTGTCCTTTGAGTAGTGGA+TGG | + | chr8_4:49602579-49602598 | None:intergenic | 40.0% |
| ! | GGTTTTTGTCCTTTGAGTAG+TGG | + | chr8_4:49602583-49602602 | None:intergenic | 40.0% |
| GTAAGAGGCTTAAGGTTTAC+AGG | - | chr8_4:49602718-49602737 | Msa1330450:CDS | 40.0% | |
| !! | TTATACCCTTTTGGCCTTTC+TGG | + | chr8_4:49602749-49602768 | None:intergenic | 40.0% |
| TCTGGTGAAGAATGTCCTAA+AGG | - | chr8_4:49602815-49602834 | Msa1330450:intron | 40.0% | |
| CTGATTGGAACAGTTCCTTT+AGG | + | chr8_4:49602833-49602852 | None:intergenic | 40.0% | |
| ! | GAAGAAAACCAAGAGGTGTA+CGG | - | chr8_4:49602903-49602922 | Msa1330450:intron | 40.0% |
| ! | TAGGAGGCAAACTTTTGTTG+TGG | + | chr8_4:49603088-49603107 | None:intergenic | 40.0% |
| CATAAATGTGTGGACACCAA+GGG | - | chr8_4:49603261-49603280 | Msa1330450:intron | 40.0% | |
| TCATATTGATCGGTTACCCT+TGG | + | chr8_4:49603280-49603299 | None:intergenic | 40.0% | |
| TGGGTTATTGCTGGATCATT+TGG | - | chr8_4:49603319-49603338 | Msa1330450:intron | 40.0% | |
| CTTGGTATGAAGCACAGATA+CGG | - | chr8_4:49603846-49603865 | Msa1330450:intron | 40.0% | |
| ! | TATACGTGTCGGTATCATGT+CGG | - | chr8_4:49603943-49603962 | Msa1330450:intron | 40.0% |
| ! | ACAGTATATCGTGTCGATGT+TGG | - | chr8_4:49604102-49604121 | Msa1330450:intron | 40.0% |
| TCGATGTTGGACATTGATGT+TGG | - | chr8_4:49604115-49604134 | Msa1330450:intron | 40.0% | |
| GTCTGATGTCTAACATGTGT+CGG | + | chr8_4:49604144-49604163 | None:intergenic | 40.0% | |
| TCGTACATGGAAAAAAGCCA+GGG | + | chr8_4:49604442-49604461 | None:intergenic | 40.0% | |
| !!! | AACATTGGTTTTGCCGTAAC+TGG | - | chr8_4:49604543-49604562 | Msa1330450:intron | 40.0% |
| !!! | TAGGCTTTTGAAGCCAGTTA+CGG | + | chr8_4:49604559-49604578 | None:intergenic | 40.0% |
| GAACATTAGTGTCCCCTTAT+GGG | + | chr8_4:49604698-49604717 | None:intergenic | 40.0% | |
| AGAACATTAGTGTCCCCTTA+TGG | + | chr8_4:49604699-49604718 | None:intergenic | 40.0% | |
| !! | TCAGCGCAATTACTAGTCTT+AGG | + | chr8_4:49604848-49604867 | None:intergenic | 40.0% |
| TGAGATATCCCGTATTCATG+CGG | - | chr8_4:49604953-49604972 | Msa1330450:intron | 40.0% | |
| ATGCATTGTCCGCATGAATA+CGG | + | chr8_4:49604965-49604984 | None:intergenic | 40.0% | |
| TTTGGATCAGGTCTACTAGT+TGG | - | chr8_4:49605223-49605242 | Msa1330450:intron | 40.0% | |
| CAGGTCTACTAGTTGGATAT+TGG | - | chr8_4:49605230-49605249 | Msa1330450:intron | 40.0% | |
| CATGCAAGCATGGTACAATT+TGG | - | chr8_4:49605283-49605302 | Msa1330450:intron | 40.0% | |
| TATCACACTGGCACACAAAT+GGG | - | chr8_4:49605337-49605356 | Msa1330450:intron | 40.0% | |
| ! | ATGGGAAGTGGACATTTTTC+AGG | - | chr8_4:49605355-49605374 | Msa1330450:CDS | 40.0% |
| !!! | AGTGGACATTTTTCAGGAGA+AGG | - | chr8_4:49605361-49605380 | Msa1330450:CDS | 40.0% |
| TTTATTATGGAGGTCCTGGA+AGG | - | chr8_4:49605530-49605549 | Msa1330450:intron | 40.0% | |
| GCCTCCCATCAAGACAATTA+AGG | - | chr8_4:49602358-49602377 | Msa1330450:three_prime_UTR | 45.0% | |
| GCCTTAATTGTCTTGATGGG+AGG | + | chr8_4:49602362-49602381 | None:intergenic | 45.0% | |
| TTCACGAATCGAACCGACAA+TGG | - | chr8_4:49602414-49602433 | Msa1330450:CDS | 45.0% | |
| CACTGAGATTCAGCCATTGT+CGG | + | chr8_4:49602430-49602449 | None:intergenic | 45.0% | |
| GCTGAATCTCAGTGACAATG+AGG | - | chr8_4:49602436-49602455 | Msa1330450:CDS | 45.0% | |
| ! | CTTTTGTTGCAGAGTCCAGA+TGG | - | chr8_4:49602508-49602527 | Msa1330450:CDS | 45.0% |
| !! | AGTAGTGGATGGTCAAAAGC+TGG | + | chr8_4:49602568-49602587 | None:intergenic | 45.0% |
| GTTTACAGGATCCACCAGAA+AGG | - | chr8_4:49602732-49602751 | Msa1330450:CDS | 45.0% | |
| ATCCACCAGAAAGGCCAAAA+GGG | - | chr8_4:49602741-49602760 | Msa1330450:intron | 45.0% | |
| GCATAAATGTGTGGACACCA+AGG | - | chr8_4:49603260-49603279 | Msa1330450:intron | 45.0% | |
| TACATTAGAAGCTGGATGGC+AGG | - | chr8_4:49603354-49603373 | Msa1330450:intron | 45.0% | |
| CAGGTAAGCCCTGAGTTATA+TGG | - | chr8_4:49603502-49603521 | Msa1330450:intron | 45.0% | |
| ACGGATGCATATCAAGCAAC+TGG | - | chr8_4:49603652-49603671 | Msa1330450:intron | 45.0% | |
| AGTGTCCATGCTTCATAGCT+TGG | - | chr8_4:49604013-49604032 | Msa1330450:intron | 45.0% | |
| CTCGTACATGGAAAAAAGCC+AGG | + | chr8_4:49604443-49604462 | None:intergenic | 45.0% | |
| TGCATTGTCCGCATGAATAC+GGG | + | chr8_4:49604964-49604983 | None:intergenic | 45.0% | |
| GTATTCATGCGGACAATGCA+TGG | - | chr8_4:49604964-49604983 | Msa1330450:intron | 45.0% | |
| AGGACCCAAAACATGGACAT+TGG | - | chr8_4:49605191-49605210 | Msa1330450:CDS | 45.0% | |
| ACCCAAAACATGGACATTGG+TGG | - | chr8_4:49605194-49605213 | Msa1330450:intron | 45.0% | |
| ! | GCCACCAATGTCCATGTTTT+GGG | + | chr8_4:49605198-49605217 | None:intergenic | 45.0% |
| ! | AGCCACCAATGTCCATGTTT+TGG | + | chr8_4:49605199-49605218 | None:intergenic | 45.0% |
| ! | GGACATTGGTGGCTTGAATT+TGG | - | chr8_4:49605205-49605224 | Msa1330450:intron | 45.0% |
| TGGTGGCTTGAATTTGGATC+AGG | - | chr8_4:49605211-49605230 | Msa1330450:intron | 45.0% | |
| CTTGAGAAGTCATGCAAGCA+TGG | - | chr8_4:49605273-49605292 | Msa1330450:intron | 45.0% | |
| GCAAGCATGGTACAATTTGG+AGG | - | chr8_4:49605286-49605305 | Msa1330450:intron | 45.0% | |
| CTATCACACTGGCACACAAA+TGG | - | chr8_4:49605336-49605355 | Msa1330450:intron | 45.0% | |
| !!! | TTTTTTATATATAATTAAAG+TGG | - | chr8_4:49602668-49602687 | Msa1330450:CDS | 5.0% |
| !!! | AATAATTTTCAAAATAAATT+TGG | + | chr8_4:49603385-49603404 | None:intergenic | 5.0% |
| GATCCACCAGAAAGGCCAAA+AGG | - | chr8_4:49602740-49602759 | Msa1330450:intron | 50.0% | |
| !! | TACCCTTTTGGCCTTTCTGG+TGG | + | chr8_4:49602746-49602765 | None:intergenic | 50.0% |
| TACGGACACCAGACACGATA+CGG | - | chr8_4:49603864-49603883 | Msa1330450:intron | 50.0% | |
| GTCAGTATCCGTATCGTGTC+TGG | + | chr8_4:49603875-49603894 | None:intergenic | 50.0% | |
| TGTCGGTATCATGTCGGTGT+CGG | - | chr8_4:49603949-49603968 | Msa1330450:intron | 50.0% | |
| GACACGACAGATGTCTGACA+CGG | - | chr8_4:49603971-49603990 | Msa1330450:intron | 50.0% | |
| ACACGACAGATGTCTGACAC+GGG | - | chr8_4:49603972-49603991 | Msa1330450:intron | 50.0% | |
| GCATGGACACTCCTCGAATA+AGG | + | chr8_4:49604004-49604023 | None:intergenic | 50.0% | |
| CATGTACGAGTGTCCCTCAT+GGG | - | chr8_4:49604453-49604472 | Msa1330450:intron | 50.0% | |
| ATGTACGAGTGTCCCTCATG+GGG | - | chr8_4:49604454-49604473 | Msa1330450:intron | 50.0% | |
| AGAACAGAGCTACCCCATGA+GGG | + | chr8_4:49604469-49604488 | None:intergenic | 50.0% | |
| AAGAACAGAGCTACCCCATG+AGG | + | chr8_4:49604470-49604489 | None:intergenic | 50.0% | |
| CGTTCAAGAGGCTATCACAC+TGG | - | chr8_4:49605325-49605344 | Msa1330450:intron | 50.0% | |
| ACTGGCACACAAATGGGAAG+TGG | - | chr8_4:49605343-49605362 | Msa1330450:intron | 50.0% | |
| GGACATCTCACATTCCTTCC+AGG | + | chr8_4:49605547-49605566 | None:intergenic | 50.0% | |
| GAGTCTCTCCGTACACCTCT+TGG | + | chr8_4:49602914-49602933 | None:intergenic | 55.0% | |
| GGTGTACGGAGAGACTCAAC+AGG | - | chr8_4:49602917-49602936 | Msa1330450:intron | 55.0% | |
| ! | CTCAACAGGCTCTGGTCATG+AGG | - | chr8_4:49602931-49602950 | Msa1330450:intron | 55.0% |
| CACGACAGATGTCTGACACG+GGG | - | chr8_4:49603973-49603992 | Msa1330450:intron | 55.0% | |
| CCATGAGGGACACTCGTACA+TGG | + | chr8_4:49604455-49604474 | None:intergenic | 55.0% | |
| CCATGTACGAGTGTCCCTCA+TGG | - | chr8_4:49604452-49604471 | Msa1330450:intron | 55.0% | |
| CGGAGAGACTCAACAGGCTC+TGG | - | chr8_4:49602923-49602942 | Msa1330450:intron | 60.0% | |
| ! | ACGGGGACACGCCTTATTCG+AGG | - | chr8_4:49603990-49604009 | Msa1330450:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 49602125 | 49605826 | 49602125 | ID=Msa1330450;Name=Msa1330450 |
| chr8_4 | mRNA | 49602125 | 49605826 | 49602125 | ID=Msa1330450-mRNA-1;Parent=Msa1330450;Name=Msa1330450-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.6|0.83|1|1|1|6|256|344 |
| chr8_4 | exon | 49602125 | 49602758 | 49602125 | ID=Msa1330450-mRNA-1:exon:14416;Parent=Msa1330450-mRNA-1 |
| chr8_4 | exon | 49604393 | 49604446 | 49604393 | ID=Msa1330450-mRNA-1:exon:14415;Parent=Msa1330450-mRNA-1 |
| chr8_4 | exon | 49604576 | 49604740 | 49604576 | ID=Msa1330450-mRNA-1:exon:14414;Parent=Msa1330450-mRNA-1 |
| chr8_4 | exon | 49604999 | 49605211 | 49604999 | ID=Msa1330450-mRNA-1:exon:14413;Parent=Msa1330450-mRNA-1 |
| chr8_4 | exon | 49605345 | 49605431 | 49605345 | ID=Msa1330450-mRNA-1:exon:14412;Parent=Msa1330450-mRNA-1 |
| chr8_4 | exon | 49605689 | 49605826 | 49605689 | ID=Msa1330450-mRNA-1:exon:14411;Parent=Msa1330450-mRNA-1 |
| chr8_4 | CDS | 49605689 | 49605826 | 49605689 | ID=Msa1330450-mRNA-1:cds;Parent=Msa1330450-mRNA-1 |
| chr8_4 | CDS | 49605345 | 49605431 | 49605345 | ID=Msa1330450-mRNA-1:cds;Parent=Msa1330450-mRNA-1 |
| chr8_4 | CDS | 49604999 | 49605211 | 49604999 | ID=Msa1330450-mRNA-1:cds;Parent=Msa1330450-mRNA-1 |
| chr8_4 | CDS | 49604576 | 49604740 | 49604576 | ID=Msa1330450-mRNA-1:cds;Parent=Msa1330450-mRNA-1 |
| chr8_4 | CDS | 49604393 | 49604446 | 49604393 | ID=Msa1330450-mRNA-1:cds;Parent=Msa1330450-mRNA-1 |
| chr8_4 | CDS | 49602381 | 49602758 | 49602381 | ID=Msa1330450-mRNA-1:cds;Parent=Msa1330450-mRNA-1 |
| chr8_4 | three_prime_UTR | 49602125 | 49602380 | 49602125 | ID=Msa1330450-mRNA-1:three_prime_utr;Parent=Msa1330450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
