AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1458610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458610 MtrunA17_Chr1g0199801 100.000 71 0 0 3 73 375 445 1.42e-44 150
Msa1458610 MtrunA17_Chr2g0292051 43.333 60 34 0 15 74 344 403 8.92e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458610 AT2G39220.1 77.465 71 16 0 3 73 398 468 1.02e-33 122
Msa1458610 AT3G54950.1 76.056 71 17 0 3 73 385 455 3.34e-31 115
Msa1458610 AT4G29800.2 65.753 73 25 0 1 73 421 493 1.06e-25 100
Msa1458610 AT4G29800.1 67.606 71 23 0 3 73 422 492 1.54e-25 100

Find 42 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAAGTGGTGTAATTAAAA+AGG 0.197078 tig0039683:+2636 Msa1458610:three_prime_UTR
ACTCCATCTTTCTAGCTATT+AGG 0.228142 tig0039683:+2715 Msa1458610:three_prime_UTR
CAGAAGCTTGATTGGCTTGC+TGG 0.233034 tig0039683:+671 Msa1458610:CDS
CTCCATCTTTCTAGCTATTA+GGG 0.257957 tig0039683:+2716 Msa1458610:three_prime_UTR
CTGTTTGGAGGGAAGAAGAT+TGG 0.292097 tig0039683:+632 Msa1458610:CDS
ACAGGCAAGTGGATCAAGTA+TGG 0.331661 tig0039683:+505 Msa1458610:intron
CATCAGCATCTTTACATTGC+TGG 0.334510 tig0039683:-564 None:intergenic
GTAACTTTCAGAAGCTTGAT+TGG 0.348924 tig0039683:+663 Msa1458610:CDS
GCTTGCTGGAGAACTTGTTC+AGG 0.361300 tig0039683:+685 Msa1458610:CDS
TCACAAGAGGACAGACATTA+TGG 0.363412 tig0039683:+2687 Msa1458610:three_prime_UTR
AAATTCAGAGGGTGGTGAAT+TGG 0.367705 tig0039683:+2838 Msa1458610:three_prime_UTR
TGAAGATAGACAAGGGTTAG+AGG 0.383057 tig0039683:+2599 Msa1458610:exon
ATCAGCATCTTTACATTGCT+GGG 0.425599 tig0039683:-563 None:intergenic
CCGGGTAAAGACGGATATAT+AGG 0.461036 tig0039683:+2485 Msa1458610:CDS
AATGTGGAGTCAGTTCTGTT+TGG 0.474082 tig0039683:+617 Msa1458610:CDS
AAAAGAAGAGTGCAAATAGC+AGG 0.488103 tig0039683:+2548 Msa1458610:CDS
CTTGCATCTGTATCCACATT+GGG 0.490760 tig0039683:-539 None:intergenic
AGCAGATGAGATGTTGAAGC+AGG 0.502021 tig0039683:+592 Msa1458610:CDS
GTGGAGTCAGTTCTGTTTGG+AGG 0.515867 tig0039683:+620 Msa1458610:CDS
CCTATATATCCGTCTTTACC+CGG 0.521126 tig0039683:-2485 None:intergenic
GATGTTGAAGCAGGAGAATG+TGG 0.527488 tig0039683:+601 Msa1458610:CDS
AACAAGATGGAGAAAGTGAA+AGG 0.528258 tig0039683:+2525 Msa1458610:CDS
AACTTGTTCAGGAGCATCAG+AGG 0.533773 tig0039683:+696 Msa1458610:CDS
CAGGCAAGTGGATCAAGTAT+GGG 0.544765 tig0039683:+506 Msa1458610:intron
AAAATGTTGCCGGGTAAAGA+CGG 0.545932 tig0039683:+2476 Msa1458610:CDS
TGGAGTCAGTTCTGTTTGGA+GGG 0.556278 tig0039683:+621 Msa1458610:CDS
TACCCTAATAGCTAGAAAGA+TGG 0.565245 tig0039683:-2718 None:intergenic
CAGCAATGTAAAGATGCTGA+TGG 0.572721 tig0039683:+565 Msa1458610:CDS
AAGAATGAAAATTCAGAGGG+TGG 0.586242 tig0039683:+2830 Msa1458610:three_prime_UTR
ACTTGCATCTGTATCCACAT+TGG 0.590823 tig0039683:-540 None:intergenic
TGGGATACTTTGCTCACAAG+AGG 0.606593 tig0039683:+2674 Msa1458610:three_prime_UTR
AGCAATGTAAAGATGCTGAT+GGG 0.623748 tig0039683:+566 Msa1458610:CDS
ACATGAACATGACAGGCAAG+TGG 0.629207 tig0039683:+494 Msa1458610:intron
AAGGGTGGGAAGATCTCTGT+GGG 0.631445 tig0039683:+2655 Msa1458610:three_prime_UTR
TTGTTCAGGAGCATCAGAGG+AGG 0.639976 tig0039683:+699 Msa1458610:CDS
AGGCAAGTGGATCAAGTATG+GGG 0.644681 tig0039683:+507 Msa1458610:intron
GGTAAAGACGGATATATAGG+AGG 0.648744 tig0039683:+2488 Msa1458610:CDS
TAATAGCTAGAAAGATGGAG+TGG 0.654275 tig0039683:-2713 None:intergenic
AGAAGAGTGCAAATAGCAGG+TGG 0.662294 tig0039683:+2551 Msa1458610:CDS
GGATCAAGTATGGGGCAATG+TGG 0.678401 tig0039683:+515 Msa1458610:CDS
GGGGCAATGTGGTCCCAATG+TGG 0.693974 tig0039683:+526 Msa1458610:CDS
AAAGGGTGGGAAGATCTCTG+TGG 0.709815 tig0039683:+2654 Msa1458610:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTATTTTGAAATTA+CGG + tig0039683:1747-1766 Msa1458610:intron 10.0%
!!! TTTTTTTATTTTGAAATTAC+GGG + tig0039683:1748-1767 Msa1458610:intron 10.0%
!!! TTTTTGTTAATTTACCAAAA+AGG - tig0039683:318-337 None:intergenic 15.0%
!! TATAGAATTACTGTATAAAA+TGG + tig0039683:1440-1459 Msa1458610:intron 15.0%
!! AAATAAAAAAACAAACAAAC+CGG - tig0039683:1739-1758 None:intergenic 15.0%
!! TTGACTAAATAATGTAAATT+TGG + tig0039683:2103-2122 Msa1458610:intron 15.0%
!! TGACTAAATAATGTAAATTT+GGG + tig0039683:2104-2123 Msa1458610:intron 15.0%
!!! TCATTTGTTTTCTTTTAATT+TGG + tig0039683:2344-2363 Msa1458610:intron 15.0%
!!! CAATTTTAGGAAATTTTTGT+TGG + tig0039683:85-104 Msa1458610:intron 20.0%
!! AACTATTGAAGTAATTATTG+GGG - tig0039683:259-278 None:intergenic 20.0%
!! CAACTATTGAAGTAATTATT+GGG - tig0039683:260-279 None:intergenic 20.0%
!! TCAACTATTGAAGTAATTAT+TGG - tig0039683:261-280 None:intergenic 20.0%
!!! ATTTTATGAATGTACTTCTA+AGG + tig0039683:459-478 Msa1458610:intron 20.0%
!!! TTTTATGAATGTACTTCTAA+GGG + tig0039683:460-479 Msa1458610:intron 20.0%
!! AATTACTGTATAAAATGGTT+AGG + tig0039683:1445-1464 Msa1458610:intron 20.0%
!! TCATAAATAAAATCAGATCA+TGG + tig0039683:1644-1663 Msa1458610:intron 20.0%
!! TACTTGAATTTCTAATTGTT+TGG + tig0039683:1841-1860 Msa1458610:intron 20.0%
!! ACTTGAATTTCTAATTGTTT+GGG + tig0039683:1842-1861 Msa1458610:intron 20.0%
!! TATTTGGTTACATATTTCTT+TGG + tig0039683:1933-1952 Msa1458610:intron 20.0%
!!! GAATTCTATTTATTTTGCAA+AGG + tig0039683:2139-2158 Msa1458610:intron 20.0%
!!! ATATTTCTGTCTTGTTTTTT+TGG - tig0039683:2261-2280 None:intergenic 20.0%
!! TGGTAAATATACTATATGTT+TGG - tig0039683:2297-2316 None:intergenic 20.0%
!! AGAAAACAAATGATAAGATT+TGG - tig0039683:2337-2356 None:intergenic 20.0%
!! TATTATAAATTTCAAGAGCA+AGG - tig0039683:2378-2397 None:intergenic 20.0%
!! ATAATATTTCATTTCGTGAA+TGG + tig0039683:2392-2411 Msa1458610:intron 20.0%
!! AAAAAAGAATGAAAATTCAG+AGG + tig0039683:2826-2845 Msa1458610:three_prime_UTR 20.0%
!! AAAAAGAATGAAAATTCAGA+GGG + tig0039683:2827-2846 Msa1458610:three_prime_UTR 20.0%
! GAAACTAATTACCAAAACTA+TGG - tig0039683:112-131 None:intergenic 25.0%
!! ATTAGTTTCATTATAGCATG+TGG + tig0039683:123-142 Msa1458610:intron 25.0%
!!! CTTAATTTTGATCCTAAAGA+CGG - tig0039683:204-223 None:intergenic 25.0%
! CGAGATTATTGAATTTCATT+TGG + tig0039683:232-251 Msa1458610:intron 25.0%
!!! TGTGTTCTAAAATACCTTTT+TGG + tig0039683:301-320 Msa1458610:intron 25.0%
!! TTGGTAATTTATTACTCAAG+GGG - tig0039683:901-920 None:intergenic 25.0%
!! CTTGGTAATTTATTACTCAA+GGG - tig0039683:902-921 None:intergenic 25.0%
! ATTGTTATCTGATTAGTACT+TGG - tig0039683:1050-1069 None:intergenic 25.0%
!!! GGTCTTTGGTAATTTTTAAT+GGG + tig0039683:1225-1244 Msa1458610:intron 25.0%
!!! TTTGGTAATTTTTAATGGGT+GGG + tig0039683:1229-1248 Msa1458610:intron 25.0%
! TAAAGACATCCACAAATTAA+GGG - tig0039683:1266-1285 None:intergenic 25.0%
! TTAAAGACATCCACAAATTA+AGG - tig0039683:1267-1286 None:intergenic 25.0%
!! ATTGTTGTTACATACTTACA+TGG + tig0039683:1474-1493 Msa1458610:intron 25.0%
! TAATACTAACAAATGAGTGT+CGG - tig0039683:1537-1556 None:intergenic 25.0%
!! TCATTTGTTAGTATTAGGAA+AGG + tig0039683:1541-1560 Msa1458610:intron 25.0%
!! CATTTGTTAGTATTAGGAAA+GGG + tig0039683:1542-1561 Msa1458610:intron 25.0%
!! TAGTCAATCTAGTTCAAAAT+AGG + tig0039683:1570-1589 Msa1458610:intron 25.0%
!! ATCTAGTTCAAAATAGGAAA+AGG + tig0039683:1576-1595 Msa1458610:intron 25.0%
!! TCTAGTTCAAAATAGGAAAA+GGG + tig0039683:1577-1596 Msa1458610:intron 25.0%
!!! GTTAAGAGGGTATTTTATTT+TGG + tig0039683:1621-1640 Msa1458610:intron 25.0%
! TAAATAAAATCAGATCATGG+AGG + tig0039683:1647-1666 Msa1458610:intron 25.0%
! TGTCATAATAAAGTTATTGC+CGG + tig0039683:1717-1736 Msa1458610:intron 25.0%
! GTGATCTTTATTGTACAAAA+AGG + tig0039683:1798-1817 Msa1458610:intron 25.0%
! CTTGAATTTCTAATTGTTTG+GGG + tig0039683:1843-1862 Msa1458610:intron 25.0%
! TTGAATTTCTAATTGTTTGG+GGG + tig0039683:1844-1863 Msa1458610:intron 25.0%
! GTAACCAAATATATACTTGA+AGG - tig0039683:1924-1943 None:intergenic 25.0%
!!! ATTTTCATGATTTTGAGTAG+TGG + tig0039683:2031-2050 Msa1458610:intron 25.0%
! GAATTTGATTGAGAAAAACA+AGG - tig0039683:2424-2443 None:intergenic 25.0%
! CATGTAATAAAATGTTTGCA+GGG + tig0039683:2444-2463 Msa1458610:intron 25.0%
! AAAGCAAAAAAAGAACAAGA+TGG + tig0039683:2512-2531 Msa1458610:CDS 25.0%
!!! TTTACTTTTGAAGATAGACA+AGG + tig0039683:2591-2610 Msa1458610:exon 25.0%
!!! TTACTTTTGAAGATAGACAA+GGG + tig0039683:2592-2611 Msa1458610:exon 25.0%
! ACAAGTGGTGTAATTAAAAA+GGG + tig0039683:2637-2656 Msa1458610:three_prime_UTR 25.0%
!!! TACACTTTGTTTTTCTTTCT+TGG - tig0039683:2750-2769 None:intergenic 25.0%
! TTTTTGTTGGTCCATAGTTT+TGG + tig0039683:98-117 Msa1458610:intron 30.0%
ACAAAAAGCCTAATCTGAAT+TGG + tig0039683:331-350 Msa1458610:intron 30.0%
TAGAACCAACCTAAACAAAA+CGG + tig0039683:801-820 Msa1458610:intron 30.0%
! CTTTCAAACAAAGCTTTTCA+GGG + tig0039683:873-892 Msa1458610:intron 30.0%
! TTTCAAACAAAGCTTTTCAG+GGG + tig0039683:874-893 Msa1458610:intron 30.0%
! CCTTGGTAATTTATTACTCA+AGG - tig0039683:903-922 None:intergenic 30.0%
CCTTGAGTAATAAATTACCA+AGG + tig0039683:900-919 Msa1458610:intron 30.0%
AAATAAAGATGCTTTCACCT+TGG - tig0039683:920-939 None:intergenic 30.0%
AGTTTAGAGGTGAAAACAAT+AGG - tig0039683:1134-1153 None:intergenic 30.0%
!! CGGTCTTTGGTAATTTTTAA+TGG + tig0039683:1224-1243 Msa1458610:intron 30.0%
!! CTTTGGTAATTTTTAATGGG+TGG + tig0039683:1228-1247 Msa1458610:intron 30.0%
!! TTGGTAATTTTTAATGGGTG+GGG + tig0039683:1230-1249 Msa1458610:intron 30.0%
! TAATCAACACCCTTAATTTG+TGG + tig0039683:1254-1273 Msa1458610:intron 30.0%
ATTACTATGATGAATCTGTG+TGG - tig0039683:1301-1320 None:intergenic 30.0%
! TCTATATTGTACTGATGATG+AGG - tig0039683:1426-1445 None:intergenic 30.0%
TGAGAGAACATAAGTTATGT+CGG + tig0039683:1507-1526 Msa1458610:intron 30.0%
! GACACTCATTTGTTAGTATT+AGG + tig0039683:1536-1555 Msa1458610:intron 30.0%
TTCAAAATAGGAAAAGGGTA+GGG + tig0039683:1582-1601 Msa1458610:intron 30.0%
!!! TATTTTGAAATTACGGGTTG+TGG + tig0039683:1754-1773 Msa1458610:intron 30.0%
!! TGTACAAAAAGGTATTTCTG+AGG + tig0039683:1809-1828 Msa1458610:intron 30.0%
!! GTACAAAAAGGTATTTCTGA+GGG + tig0039683:1810-1829 Msa1458610:intron 30.0%
TCCTCCTTCAAGTATATATT+TGG + tig0039683:1917-1936 Msa1458610:intron 30.0%
ACCAAATATATACTTGAAGG+AGG - tig0039683:1921-1940 None:intergenic 30.0%
ATAATGTAAATTTGGGCAGT+TGG + tig0039683:2111-2130 Msa1458610:intron 30.0%
TTTGCAAAGGAATGATGATA+TGG + tig0039683:2152-2171 Msa1458610:intron 30.0%
TTGCAAAGGAATGATGATAT+GGG + tig0039683:2153-2172 Msa1458610:intron 30.0%
CAAAACAAAAAGTAATGTCG+CGG + tig0039683:2224-2243 Msa1458610:intron 30.0%
! GATTTGGTACAATCAAATTG+TGG - tig0039683:2321-2340 None:intergenic 30.0%
! CCTGCAAACATTTTATTACA+TGG - tig0039683:2446-2465 None:intergenic 30.0%
CCATGTAATAAAATGTTTGC+AGG + tig0039683:2443-2462 Msa1458610:intron 30.0%
AATAAAATGTTTGCAGGGAA+TGG + tig0039683:2449-2468 Msa1458610:intron 30.0%
GACAAGTGGTGTAATTAAAA+AGG + tig0039683:2636-2655 Msa1458610:three_prime_UTR 30.0%
! ACTACTAGTTGAAGCTTTTT+AGG + tig0039683:2769-2788 Msa1458610:three_prime_UTR 30.0%
! CTACTAGTTGAAGCTTTTTA+GGG + tig0039683:2770-2789 Msa1458610:three_prime_UTR 30.0%
TCTGTGTCACAGAAATGAAA+TGG + tig0039683:165-184 Msa1458610:intron 35.0%
TATGTTTGTTTGCCGTCTTT+AGG + tig0039683:189-208 Msa1458610:intron 35.0%
!!! GTATTTTAGAACACACTGAG+GGG - tig0039683:296-315 None:intergenic 35.0%
!!! GGTATTTTAGAACACACTGA+GGG - tig0039683:297-316 None:intergenic 35.0%
!!! AGGTATTTTAGAACACACTG+AGG - tig0039683:298-317 None:intergenic 35.0%
AAAAGCCTAATCTGAATTGG+TGG + tig0039683:334-353 Msa1458610:intron 35.0%
AAAGCCTAATCTGAATTGGT+GGG + tig0039683:335-354 Msa1458610:intron 35.0%
TGTGATCGAGTTTATTATGC+TGG + tig0039683:391-410 Msa1458610:intron 35.0%
GATCAATTCATGCTTAGTTC+AGG - tig0039683:418-437 None:intergenic 35.0%
! GTTTGTTACATGAACATGAC+AGG + tig0039683:487-506 Msa1458610:intron 35.0%
ATCAGCATCTTTACATTGCT+GGG - tig0039683:566-585 None:intergenic 35.0%
AGCAATGTAAAGATGCTGAT+GGG + tig0039683:566-585 Msa1458610:CDS 35.0%
GTAACTTTCAGAAGCTTGAT+TGG + tig0039683:663-682 Msa1458610:CDS 35.0%
!! TTTAGGTTGGTTCTATAGAC+GGG - tig0039683:796-815 None:intergenic 35.0%
!! GTTTAGGTTGGTTCTATAGA+CGG - tig0039683:797-816 None:intergenic 35.0%
!! CCTGAAAAGCTTTGTTTGAA+AGG - tig0039683:875-894 None:intergenic 35.0%
! CCTTTCAAACAAAGCTTTTC+AGG + tig0039683:872-891 Msa1458610:intron 35.0%
! AATCTAAGTTGAGCAATGCA+GGG - tig0039683:1010-1029 None:intergenic 35.0%
TCTGTAGAAACTCTGTTGAT+GGG + tig0039683:1086-1105 Msa1458610:intron 35.0%
CAGCTAAATAAACACAAGCA+CGG + tig0039683:1204-1223 Msa1458610:intron 35.0%
TACATACTTACATGGTCGTA+TGG + tig0039683:1482-1501 Msa1458610:intron 35.0%
GAGAGAACATAAGTTATGTC+GGG + tig0039683:1508-1527 Msa1458610:intron 35.0%
GTTCAAAATAGGAAAAGGGT+AGG + tig0039683:1581-1600 Msa1458610:intron 35.0%
GAACTTGGAAGATGTTAAGA+GGG + tig0039683:1608-1627 Msa1458610:intron 35.0%
ACTACGGAAAAAACTTTGGA+GGG - tig0039683:1678-1697 None:intergenic 35.0%
!!! TTTTTTCCGTAGTCCTGAAA+AGG + tig0039683:1685-1704 Msa1458610:intron 35.0%
CACAAAGAACCCAATTAGAA+CGG - tig0039683:1878-1897 None:intergenic 35.0%
TTCTAATTGGGTTCTTTGTG+TGG + tig0039683:1878-1897 Msa1458610:intron 35.0%
GGCATAGATAATTTCCATCT+TGG - tig0039683:1971-1990 None:intergenic 35.0%
TCAGAAGTCATCTATGCAAA+GGG - tig0039683:1992-2011 None:intergenic 35.0%
TAGTGGTCCTAATATGCTAT+TGG + tig0039683:2048-2067 Msa1458610:intron 35.0%
TAAATTTGGGCAGTTGGATA+TGG + tig0039683:2117-2136 Msa1458610:intron 35.0%
TGCAAAGGAATGATGATATG+GGG + tig0039683:2154-2173 Msa1458610:intron 35.0%
TGGTACAATCAAATTGTGGT+TGG - tig0039683:2317-2336 None:intergenic 35.0%
AATTTCAAGAGCAAGGACTA+AGG - tig0039683:2371-2390 None:intergenic 35.0%
GAATGGTCAAAAAATGTTGC+CGG + tig0039683:2466-2485 Msa1458610:CDS 35.0%
AATGGTCAAAAAATGTTGCC+GGG + tig0039683:2467-2486 Msa1458610:CDS 35.0%
AACAAGATGGAGAAAGTGAA+AGG + tig0039683:2525-2544 Msa1458610:CDS 35.0%
! AAAAGAAGAGTGCAAATAGC+AGG + tig0039683:2548-2567 Msa1458610:CDS 35.0%
TGTTGAGTGAAAAAGACAAG+TGG + tig0039683:2622-2641 Msa1458610:three_prime_UTR 35.0%
AGTGGTGTAATTAAAAAGGG+TGG + tig0039683:2640-2659 Msa1458610:three_prime_UTR 35.0%
GTGGTGTAATTAAAAAGGGT+GGG + tig0039683:2641-2660 Msa1458610:three_prime_UTR 35.0%
TAATAGCTAGAAAGATGGAG+TGG - tig0039683:2716-2735 None:intergenic 35.0%
!! ACTCCATCTTTCTAGCTATT+AGG + tig0039683:2715-2734 Msa1458610:three_prime_UTR 35.0%
!! CTCCATCTTTCTAGCTATTA+GGG + tig0039683:2716-2735 Msa1458610:three_prime_UTR 35.0%
TACCCTAATAGCTAGAAAGA+TGG - tig0039683:2721-2740 None:intergenic 35.0%
AAGAATGAAAATTCAGAGGG+TGG + tig0039683:2830-2849 Msa1458610:three_prime_UTR 35.0%
TTATAGCATGTGGAATGCTG+TGG + tig0039683:133-152 Msa1458610:intron 40.0%
AAGCCTAATCTGAATTGGTG+GGG + tig0039683:336-355 Msa1458610:intron 40.0%
ATTCCCCACCAATTCAGATT+AGG - tig0039683:342-361 None:intergenic 40.0%
CTTGCATCTGTATCCACATT+GGG - tig0039683:542-561 None:intergenic 40.0%
ACTTGCATCTGTATCCACAT+TGG - tig0039683:543-562 None:intergenic 40.0%
CATCAGCATCTTTACATTGC+TGG - tig0039683:567-586 None:intergenic 40.0%
CAGCAATGTAAAGATGCTGA+TGG + tig0039683:565-584 Msa1458610:CDS 40.0%
AATGTGGAGTCAGTTCTGTT+TGG + tig0039683:617-636 Msa1458610:CDS 40.0%
GCTTGTTTGAAAGCAACAGT+GGG - tig0039683:740-759 None:intergenic 40.0%
! AGCTTGTTTGAAAGCAACAG+TGG - tig0039683:741-760 None:intergenic 40.0%
!!! GCTTACCGTTTTGTTTAGGT+TGG - tig0039683:809-828 None:intergenic 40.0%
!!! GTGTGCTTACCGTTTTGTTT+AGG - tig0039683:813-832 None:intergenic 40.0%
AAAACGGTAAGCACACTCAT+TGG + tig0039683:817-836 Msa1458610:intron 40.0%
! GAATCTAAGTTGAGCAATGC+AGG - tig0039683:1011-1030 None:intergenic 40.0%
GTCTGTAGAAACTCTGTTGA+TGG + tig0039683:1085-1104 Msa1458610:intron 40.0%
CTGTAGAAACTCTGTTGATG+GGG + tig0039683:1087-1106 Msa1458610:intron 40.0%
GGTGTGTTCGAATAGTTTAG+AGG - tig0039683:1147-1166 None:intergenic 40.0%
! TGTGTTGCTGGTCTGATAAT+AGG - tig0039683:1168-1187 None:intergenic 40.0%
CACAAGTTTCAATGTGTTGC+TGG - tig0039683:1180-1199 None:intergenic 40.0%
ATAAACACAAGCACGGTCTT+TGG + tig0039683:1211-1230 Msa1458610:intron 40.0%
TGTCAGCTTCTGTGTATTCA+TGG + tig0039683:1376-1395 Msa1458610:intron 40.0%
CTTCTGTGTATTCATGGTCA+TGG + tig0039683:1382-1401 Msa1458610:intron 40.0%
AAATAGGAAAAGGGTAGGGT+AGG + tig0039683:1586-1605 Msa1458610:intron 40.0%
GGAACTTGGAAGATGTTAAG+AGG + tig0039683:1607-1626 Msa1458610:intron 40.0%
! CTACGGAAAAAACTTTGGAG+GGG - tig0039683:1677-1696 None:intergenic 40.0%
GACTACGGAAAAAACTTTGG+AGG - tig0039683:1679-1698 None:intergenic 40.0%
CAGGACTACGGAAAAAACTT+TGG - tig0039683:1682-1701 None:intergenic 40.0%
!! AGGTATTTCTGAGGGCATTT+AGG + tig0039683:1818-1837 Msa1458610:intron 40.0%
TCTAATTGTTTGGGGGATTG+AGG + tig0039683:1851-1870 Msa1458610:intron 40.0%
GATTGAGGACCGTTCTAATT+GGG + tig0039683:1866-1885 Msa1458610:intron 40.0%
CTCAGAAGTCATCTATGCAA+AGG - tig0039683:1993-2012 None:intergenic 40.0%
TGGTCCTAATATGCTATTGG+AGG + tig0039683:2051-2070 Msa1458610:intron 40.0%
GGTCCTAATATGCTATTGGA+GGG + tig0039683:2052-2071 Msa1458610:intron 40.0%
TGACCCTCCAATAGCATATT+AGG - tig0039683:2058-2077 None:intergenic 40.0%
AAAATGTTGCCGGGTAAAGA+CGG + tig0039683:2476-2495 Msa1458610:CDS 40.0%
CCTATATATCCGTCTTTACC+CGG - tig0039683:2488-2507 None:intergenic 40.0%
GGTAAAGACGGATATATAGG+AGG + tig0039683:2488-2507 Msa1458610:CDS 40.0%
TGAAGATAGACAAGGGTTAG+AGG + tig0039683:2599-2618 Msa1458610:exon 40.0%
TCACAAGAGGACAGACATTA+TGG + tig0039683:2687-2706 Msa1458610:three_prime_UTR 40.0%
AAATTCAGAGGGTGGTGAAT+TGG + tig0039683:2838-2857 Msa1458610:three_prime_UTR 40.0%
ACATGAACATGACAGGCAAG+TGG + tig0039683:494-513 Msa1458610:intron 45.0%
ACAGGCAAGTGGATCAAGTA+TGG + tig0039683:505-524 Msa1458610:intron 45.0%
CAGGCAAGTGGATCAAGTAT+GGG + tig0039683:506-525 Msa1458610:intron 45.0%
AGGCAAGTGGATCAAGTATG+GGG + tig0039683:507-526 Msa1458610:intron 45.0%
AGCAGATGAGATGTTGAAGC+AGG + tig0039683:592-611 Msa1458610:CDS 45.0%
GATGTTGAAGCAGGAGAATG+TGG + tig0039683:601-620 Msa1458610:CDS 45.0%
TGGAGTCAGTTCTGTTTGGA+GGG + tig0039683:621-640 Msa1458610:CDS 45.0%
CTGTTTGGAGGGAAGAAGAT+TGG + tig0039683:632-651 Msa1458610:CDS 45.0%
!! AACTTGTTCAGGAGCATCAG+AGG + tig0039683:696-715 Msa1458610:CDS 45.0%
!! TCTATAGACGGGTTGGGTTT+GGG - tig0039683:785-804 None:intergenic 45.0%
!! TTCTATAGACGGGTTGGGTT+TGG - tig0039683:786-805 None:intergenic 45.0%
!! GTTGGTTCTATAGACGGGTT+GGG - tig0039683:791-810 None:intergenic 45.0%
AAAAGGGTAGGGTAGGAACT+TGG + tig0039683:1593-1612 Msa1458610:intron 45.0%
!! GAAGCACCTTTTCAGGACTA+CGG - tig0039683:1694-1713 None:intergenic 45.0%
!!! GACATGAGAAGCACCTTTTC+AGG - tig0039683:1701-1720 None:intergenic 45.0%
! TGAAATTACGGGTTGTGGAG+TGG + tig0039683:1759-1778 Msa1458610:intron 45.0%
GGATTGAGGACCGTTCTAAT+TGG + tig0039683:1865-1884 Msa1458610:intron 45.0%
GGTGTCTTCAACAACCAAGA+TGG + tig0039683:1954-1973 Msa1458610:intron 45.0%
ATGATATGGGGACAACAACG+TGG + tig0039683:2166-2185 Msa1458610:intron 45.0%
CCGGGTAAAGACGGATATAT+AGG + tig0039683:2485-2504 Msa1458610:CDS 45.0%
! AGAAGAGTGCAAATAGCAGG+TGG + tig0039683:2551-2570 Msa1458610:CDS 45.0%
TGGGATACTTTGCTCACAAG+AGG + tig0039683:2674-2693 Msa1458610:three_prime_UTR 45.0%
GGATCAAGTATGGGGCAATG+TGG + tig0039683:515-534 Msa1458610:CDS 50.0%
GTGGAGTCAGTTCTGTTTGG+AGG + tig0039683:620-639 Msa1458610:CDS 50.0%
!! CAGAAGCTTGATTGGCTTGC+TGG + tig0039683:671-690 Msa1458610:CDS 50.0%
! GCTTGCTGGAGAACTTGTTC+AGG + tig0039683:685-704 Msa1458610:CDS 50.0%
!! TTGTTCAGGAGCATCAGAGG+AGG + tig0039683:699-718 Msa1458610:CDS 50.0%
!! TTGGGCTTCTAGGTGGGTTT+TGG - tig0039683:767-786 None:intergenic 50.0%
TTGGGTTTGGGCTTCTAGGT+GGG - tig0039683:773-792 None:intergenic 50.0%
!! GGTTGGTTCTATAGACGGGT+TGG - tig0039683:792-811 None:intergenic 50.0%
! CGGAAAAAACTTTGGAGGGG+TGG - tig0039683:1674-1693 None:intergenic 50.0%
TATGCTATTGGAGGGTCACG+TGG + tig0039683:2060-2079 Msa1458610:intron 50.0%
ATGCTATTGGAGGGTCACGT+GGG + tig0039683:2061-2080 Msa1458610:intron 50.0%
AAAGGGTGGGAAGATCTCTG+TGG + tig0039683:2654-2673 Msa1458610:three_prime_UTR 50.0%
AAGGGTGGGAAGATCTCTGT+GGG + tig0039683:2655-2674 Msa1458610:three_prime_UTR 50.0%
GTTGGGTTTGGGCTTCTAGG+TGG - tig0039683:774-793 None:intergenic 55.0%
GGACAACAACGTGGCAAGAC+AGG + tig0039683:2175-2194 Msa1458610:intron 55.0%
GGGGCAATGTGGTCCCAATG+TGG + tig0039683:526-545 Msa1458610:CDS 60.0%
! CGGGTTGGGTTTGGGCTTCT+AGG - tig0039683:777-796 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0039683 gene 73 2919 73 ID=Msa1458610;Name=Msa1458610
tig0039683 mRNA 73 2919 73 ID=Msa1458610-mRNA-1;Parent=Msa1458610;Name=Msa1458610-mRNA-1;_AED=0.09;_eAED=0.38;_QI=0|0|0.33|0.66|0.5|0.33|3|318|118
tig0039683 exon 73 78 73 ID=Msa1458610-mRNA-1:exon:21845;Parent=Msa1458610-mRNA-1
tig0039683 exon 509 722 509 ID=Msa1458610-mRNA-1:exon:21846;Parent=Msa1458610-mRNA-1
tig0039683 exon 2465 2919 2465 ID=Msa1458610-mRNA-1:exon:21847;Parent=Msa1458610-mRNA-1
tig0039683 CDS 73 78 73 ID=Msa1458610-mRNA-1:cds;Parent=Msa1458610-mRNA-1
tig0039683 CDS 509 722 509 ID=Msa1458610-mRNA-1:cds;Parent=Msa1458610-mRNA-1
tig0039683 CDS 2465 2601 2465 ID=Msa1458610-mRNA-1:cds;Parent=Msa1458610-mRNA-1
tig0039683 three_prime_UTR 2602 2919 2602 ID=Msa1458610-mRNA-1:three_prime_utr;Parent=Msa1458610-mRNA-1
Gene Sequence

>Msa1458610

AAGAATGCAAGTGGATCAAGTATGGGGCAATGTGGTCCCAATGTGGATACAGATGCAAGTCCCAGCAATGTAAAGATGCTGATGGGAATAGCAGATGAGATGTTGAAGCAGGAGAATGTGGAGTCAGTTCTGTTTGGAGGGAAGAAGATTGGAGAGCAGAGTAACTTTCAGAAGCTTGATTGGCTTGCTGGAGAACTTGTTCAGGAGCATCAGAGGAGGAGGAATGGTCAAAAAATGTTGCCGGGTAAAGACGGATATATAGGAGGCAAAGCAAAAAAAGAACAAGATGGAGAAAGTGAAAGGAAAAGAAGAGTGCAAATAGCAGGTGGTAGTATAGCAGCTTTACTTTACTTTTGA

Protein sequence

>Msa1458610

KNASGSSMGQCGPNVDTDASPSNVKMLMGIADEMLKQENVESVLFGGKKIGEQSNFQKLDWLAGELVQEHQRRRNGQKMLPGKDGYIGGKAKKEQDGESERKRRVQIAGGSIAALLYF*