AlfalfaGEDB | Msa1124980

M. sativa cultivar zhongmu-4 / Msa1124980

KEGG: K01689
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004634 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0030054 GO:0031967 GO:0031975 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097305 GO:1901363 GO:1901700
PFAM: PF03952.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1124980	XP_013450091.1	99.775	444	1	0	1	444	1	444	0.0	909

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1124980	sp\|P42896\|ENO_RICCO	90.023	441	44	0	4	444	5	445	0.0	831

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1124980	A0A072U338	99.775	444	1	0	1	444	1	444	0.0	909

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001760	Msa1124980	0.801784	7.646200e-49	-8.615850e-47
Msa0003330	Msa1124980	0.833773	4.398436e-56	-8.615850e-47
Msa0016440	Msa1124980	0.814744	1.318176e-51	-8.615850e-47
Msa0020870	Msa1124980	0.805560	1.258508e-49	-8.615850e-47
Msa0025690	Msa1124980	-0.807728	4.387562e-50	-8.615850e-47
Msa0029730	Msa1124980	0.802710	4.930732e-49	-8.615850e-47
Msa0042510	Msa1124980	0.840298	9.457712e-58	-8.615850e-47
Msa0050320	Msa1124980	-0.802988	4.320675e-49	-8.615850e-47
Msa0071640	Msa1124980	0.814551	1.454254e-51	-8.615850e-47
Msa0079560	Msa1124980	0.821020	5.041169e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1124980	MtrunA17_Chr7g0265741	99.775	444	1	0	1	444	1	444	0.0	909
Msa1124980	MtrunA17_Chr6g0476311	87.640	445	54	1	1	444	2	446	0.0	816
Msa1124980	MtrunA17_Chr2g0307671	68.182	440	128	7	2	440	63	491	0.0	602
Msa1124980	MtrunA17_Chr5g0447301	60.268	224	81	4	2	224	45	261	1.07e-84	261
Msa1124980	MtrunA17_Chr5g0447311	59.155	213	84	3	226	438	19	228	8.35e-84	256

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1124980	AT2G36530.1	89.189	444	48	0	1	444	1	444	0.0	821
Msa1124980	AT2G36530.2	89.336	422	45	0	23	444	12	433	0.0	780
Msa1124980	AT1G74030.1	67.352	438	131	6	4	440	51	477	0.0	599
Msa1124980	AT2G29560.1	57.763	438	174	7	2	438	45	472	1.83e-175	500

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Find 165 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCGAGAGTTGATA+GGG	0.529115	7_3:-76250589	Msa1124980:five_prime_UTR
AAACAACAGGTCAACCAAAT+TGG	0.247163	7_3:-76246481	Msa1124980:intron
AAAGATCTGACGGGCCTTGA+TGG	0.379603	7_3:+76250434	None:intergenic
AAATATGTGGTTGGGTGTTT+AGG	0.286685	7_3:-76245265	Msa1124980:three_prime_UTR
AAATCTCATTGCTCAAACTA+AGG	0.442849	7_3:+76245852	None:intergenic
AACACTAACCTGGTTGTACT+TGG	0.444307	7_3:+76246075	None:intergenic
AACAGCAAGATCAGCAATGA+AGG	0.504723	7_3:+76246249	None:intergenic
AACATTCAGGAAAACAAGGA+AGG	0.590478	7_3:-76247697	Msa1124980:CDS
AAGCAATAAAACCTGAGGCT+CGG	0.599744	7_3:+76245431	None:intergenic
AAGTCCGCCATTGACAAAGC+TGG	0.537931	7_3:-76247661	Msa1124980:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTATAAATAACCCATAAGC+AGG	-	chr7_3:76245216-76245235	Msa1124980:three_prime_UTR	30.0%
AAAAAGAAATGAAACAAGGC+AGG	+	chr7_3:76246438-76246457	None:intergenic	30.0%
TACTGCATAAAAAAGTGAGA+TGG	-	chr7_3:76246513-76246532	Msa1124980:intron	30.0%
GGATAAATTACCTTGTATAG+AGG	+	chr7_3:76247095-76247114	None:intergenic	30.0%
ATGGACATAAAAGAAAACTG+GGG	+	chr7_3:76247380-76247399	None:intergenic	30.0%
ACCATTAATCACATTGAAAG+CGG	+	chr7_3:76247515-76247534	None:intergenic	30.0%
TACTGGTAAAAAACAAAGCT+TGG	+	chr7_3:76247836-76247855	None:intergenic	30.0%
GCTGTGATTAAGAAGAAATA+TGG	-	chr7_3:76248019-76248038	Msa1124980:intron	30.0%
CGAAACAGAAAATTGAATAG+AGG	+	chr7_3:76248173-76248192	None:intergenic	30.0%
ATCATACGATTTGAACTTCA+AGG	-	chr7_3:76248305-76248324	Msa1124980:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	76245193	76250611	76245193	ID=Msa1124980;Name=Msa1124980
chr7_3	mRNA	76245193	76250611	76245193	ID=Msa1124980-mRNA-1;Parent=Msa1124980;Name=Msa1124980-mRNA-1;_AED=0.14;_eAED=0.14;_QI=139\|1\|1\|1\|1\|1\|16\|714\|444
chr7_3	exon	76245193	76245987	76245193	ID=Msa1124980-mRNA-1:exon:20752;Parent=Msa1124980-mRNA-1
chr7_3	exon	76246084	76246140	76246084	ID=Msa1124980-mRNA-1:exon:20751;Parent=Msa1124980-mRNA-1
chr7_3	exon	76246237	76246288	76246237	ID=Msa1124980-mRNA-1:exon:20750;Parent=Msa1124980-mRNA-1
chr7_3	exon	76246406	76246494	76246406	ID=Msa1124980-mRNA-1:exon:20749;Parent=Msa1124980-mRNA-1
chr7_3	exon	76246596	76246646	76246596	ID=Msa1124980-mRNA-1:exon:20748;Parent=Msa1124980-mRNA-1
chr7_3	exon	76246737	76246931	76246737	ID=Msa1124980-mRNA-1:exon:20747;Parent=Msa1124980-mRNA-1
chr7_3	exon	76247472	76247549	76247472	ID=Msa1124980-mRNA-1:exon:20746;Parent=Msa1124980-mRNA-1
chr7_3	exon	76247648	76247785	76247648	ID=Msa1124980-mRNA-1:exon:20745;Parent=Msa1124980-mRNA-1
chr7_3	exon	76248073	76248153	76248073	ID=Msa1124980-mRNA-1:exon:20744;Parent=Msa1124980-mRNA-1
chr7_3	exon	76248237	76248338	76248237	ID=Msa1124980-mRNA-1:exon:20743;Parent=Msa1124980-mRNA-1
chr7_3	exon	76248701	76248781	76248701	ID=Msa1124980-mRNA-1:exon:20742;Parent=Msa1124980-mRNA-1
chr7_3	exon	76248878	76248964	76248878	ID=Msa1124980-mRNA-1:exon:20741;Parent=Msa1124980-mRNA-1
chr7_3	exon	76249146	76249193	76249146	ID=Msa1124980-mRNA-1:exon:20740;Parent=Msa1124980-mRNA-1
chr7_3	exon	76249760	76249824	76249760	ID=Msa1124980-mRNA-1:exon:20739;Parent=Msa1124980-mRNA-1
chr7_3	exon	76250226	76250289	76250226	ID=Msa1124980-mRNA-1:exon:20738;Parent=Msa1124980-mRNA-1
chr7_3	exon	76250407	76250611	76250407	ID=Msa1124980-mRNA-1:exon:20737;Parent=Msa1124980-mRNA-1
chr7_3	five_prime_UTR	76250473	76250611	76250473	ID=Msa1124980-mRNA-1:five_prime_utr;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76250407	76250472	76250407	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76250226	76250289	76250226	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76249760	76249824	76249760	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76249146	76249193	76249146	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76248878	76248964	76248878	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76248701	76248781	76248701	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76248237	76248338	76248237	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76248073	76248153	76248073	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76247648	76247785	76247648	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76247472	76247549	76247472	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76246737	76246931	76246737	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76246596	76246646	76246596	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76246406	76246494	76246406	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76246237	76246288	76246237	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76246084	76246140	76246084	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	CDS	76245907	76245987	76245907	ID=Msa1124980-mRNA-1:cds;Parent=Msa1124980-mRNA-1
chr7_3	three_prime_UTR	76245193	76245906	76245193	ID=Msa1124980-mRNA-1:three_prime_utr;Parent=Msa1124980-mRNA-1

Gene Sequence

>Msa1124980

ATGGCTGCTATTACCTCCATCAAGGCCCGTCAGATCTTTGACAGTCGTGGCAATCCTACCGTCGAGGTTGATATAACCGTATCCGATGGTACTTTCGCTAGAGCTGCTGTTCCTAGTGGTGCATCCACTGGTATTTACGAGGCTCTTGAGTTAAGAGATGGAGGATCTGACTATCTTGGCAAGGGTGTATCAAAGGCTGTTGCCAACGTGAACACCATCATTGCACCAGCATTGATCGGCAAGGACCCAACTCAGCAGACAGAAATTGACAACTTCATGGTTCAGAAGCTTGACGGAACTGTTAATGAATGGGGTTGGTGCAAACAAAAGCTTGGTGCCAATGCCATATTAGCAGTGTCTCTTGCAGTGTGCAAAGCTGGTGCTAATGTCCTAAAGATTCCTCTATACAAGCATATTGCAAACATTGCCGGTAACAAGAACTTGGTTTTGCCTGTTCCCGCTTTCAATGTGATTAATGGTGGATCACATGCAGGAAACAAACTTGCAATGCAGGAGTTTATGGTTCTTCCTGTTGGAGCCTCCTCTTTCAAGGAAGCCATGAAGATGGGTGTGGAAGTCTATCACCATCTGAAGGCTGTGATTAAGAAGAAATATGGTCAAGATGCAGTAAATGTTGGTGATGAAGGTGGCTTTGCCCCCAACATTCAGGAAAACAAGGAAGGTTTGGAATTGCTAAAGTCCGCCATTGACAAAGCTGGTTACACCGGCAAAGTTGTCATTGGAATGGATGTTGCAGCTTCTGAGTTCTACAAGGAGGACAAATCATACGATTTGAACTTCAAGGAAGATAACAACGACGGCTCACAGAAGATATCTGGAGAGGCTTTGAAAGATCTCTACAAGTCATTTGTGTCAGAGTACCCAATTGTTTCAATTGAGGATCCTTTTGACCAGGATGACTGGGAGCACTATGCTAAGATGACCGGTGAGATTGGAACCAATGTACAAATTGTTGGTGATGATCTCTTGGTTACCAACCCCAAGAGAGTTCAGAAGGCAATTGACTCAAAAGCATGCAATGCTCTTTTGCTCAAGGTCAACCAAATTGGATCCGTGACTGAGAGTATTGAAGCCGTCAGGATGTCCAAAAAGGCTGGATGGGGTGTCATGACCAGCCACAGAAGTGGAGAGACTGAGGATACCTTCATTGCTGATCTTGCTGTTGGTTTGTCAACGGGTCAAATTAAGACCGGAGCACCTTGCAGGTCAGAGCGTCTTGCCAAGTACAACCAGCTATTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTATGCTGGAGCAAACTTCCGTACCCCTGTCGAGCCATACTAG

Protein sequence

>Msa1124980

MAAITSIKARQIFDSRGNPTVEVDITVSDGTFARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVANVNTIIAPALIGKDPTQQTEIDNFMVQKLDGTVNEWGWCKQKLGANAILAVSLAVCKAGANVLKIPLYKHIANIAGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMVLPVGASSFKEAMKMGVEVYHHLKAVIKKKYGQDAVNVGDEGGFAPNIQENKEGLELLKSAIDKAGYTGKVVIGMDVAASEFYKEDKSYDLNFKEDNNDGSQKISGEALKDLYKSFVSEYPIVSIEDPFDQDDWEHYAKMTGEIGTNVQIVGDDLLVTNPKRVQKAIDSKACNALLLKVNQIGSVTESIEAVRMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGANFRTPVEPY*