AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1108800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108800 MtrunA17_Chr7g0242711 71.429 77 17 1 93 169 1 72 1.85e-28 100
Msa1108800 MtrunA17_Chr7g0242711 100.000 26 0 0 1 26 1 26 5.72e-12 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 58 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAGATTGAAGATGTTTC+TGG 0.207138 7_3:-52077577 None:intergenic
CAGTCATGTGCTGCTCAATT+TGG 0.222969 7_3:+52079585 Msa1108800:intron
GTGACACGTGCGAGGGTTAT+TGG 0.244673 7_3:-52077490 None:intergenic
CCTACATTTGAACCCATATT+AGG 0.245385 7_3:+52079682 Msa1108800:CDS
GAGATAATTGCAAACCTTGA+TGG 0.285105 7_3:-52077612 None:intergenic
TAGTATTCTAATCTTGTCTT+TGG 0.292395 7_3:-52080959 None:intergenic
GTCAATGAAGTGGTTGTTAA+TGG 0.300803 7_3:+52077931 Msa1108800:CDS
TTTGAACCCATCTACGTTGT+AGG 0.301925 7_3:-52079713 Msa1108810:intron
TGACACGTGCGAGGGTTATT+GGG 0.311408 7_3:-52077489 None:intergenic
GTAGGCCAGAGGTCCTAATA+TGG 0.325112 7_3:-52079695 Msa1108810:intron
CCTCTGGCCTACAACGTAGA+TGG 0.356735 7_3:+52079706 Msa1108800:CDS
CCTTGATGGATTGTGATGTT+AGG 0.359617 7_3:-52077598 None:intergenic
CTTCTGCCTCTGCAGTCTGC+TGG 0.364855 7_3:-52079761 Msa1108810:intron
AGGCAGAAGGGCATGGCAAT+TGG 0.365020 7_3:+52079775 Msa1108800:CDS
AGCAGTGATTCTTTCATTTG+TGG 0.379898 7_3:+52080794 Msa1108800:exon
AGTGAGGACATCAAAGAATA+TGG 0.394875 7_3:+52080521 Msa1108800:CDS
TGAACCCATATTAGGACCTC+TGG 0.441728 7_3:+52079690 Msa1108800:CDS
ATTTGTGGCTGCTTTGCTGA+AGG 0.444834 7_3:+52080809 Msa1108800:three_prime_UTR
TTGTTAATGGTCTTGCCAAC+AGG 0.450630 7_3:+52077944 Msa1108800:CDS
AGAGTTAGCTGAGCAGATAA+AGG 0.452139 7_3:+52080652 Msa1108800:CDS
TTCAAAAGAAGGAATCTGAT+TGG 0.457150 7_3:+52079730 Msa1108800:CDS
CATAATGAAATGGGATGTAA+TGG 0.458206 7_3:+52080914 Msa1108800:three_prime_UTR
CCTAATATGGGTTCAAATGT+AGG 0.465263 7_3:-52079682 Msa1108810:CDS
ACTGCAAACCTCTGAAATGC+AGG 0.473854 7_3:-52080501 None:intergenic
CTCTTACTTTGTCAATGAAG+TGG 0.484729 7_3:+52077921 Msa1108800:CDS
TCTTATGCAGTTTGAAGTTG+AGG 0.484755 7_3:+52077858 Msa1108800:intron
CTTGATGGATTGTGATGTTA+GGG 0.489033 7_3:-52077597 None:intergenic
TGCAAACCTTCCACACATCC+TGG 0.498949 7_3:+52079659 Msa1108800:CDS
TTTGTGGCTGCTTTGCTGAA+GGG 0.500966 7_3:+52080810 Msa1108800:three_prime_UTR
ACGTAGATGGGTTCAAAAGA+AGG 0.502051 7_3:+52079719 Msa1108800:CDS
CAGCAGACTGCAGAGGCAGA+AGG 0.505027 7_3:+52079762 Msa1108800:CDS
AACATTAACATTAGAAGTGA+TGG 0.507792 7_3:-52080460 None:intergenic
TATGGGTTCAAATGTAGGCC+AGG 0.524583 7_3:-52079677 Msa1108810:CDS
CTCTGGCCTACAACGTAGAT+GGG 0.533824 7_3:+52079707 Msa1108800:CDS
CCTAACATCACAATCCATCA+AGG 0.536122 7_3:+52077598 Msa1108800:five_prime_UTR
ATGTGTGGAAGGTTTGCATA+AGG 0.542275 7_3:-52079654 Msa1108810:CDS
GGAGCATGATGAGGTGGCAA+GGG 0.544120 7_3:-52079614 Msa1108810:CDS
ACTGCAGAGGCAGAAGGGCA+TGG 0.550633 7_3:+52079768 Msa1108800:CDS
AGCAGACTGCAGAGGCAGAA+GGG 0.556522 7_3:+52079763 Msa1108800:CDS
TAGGCCAGAGGTCCTAATAT+GGG 0.557022 7_3:-52079694 Msa1108810:CDS
GACACGTGCGAGGGTTATTG+GGG 0.560328 7_3:-52077488 None:intergenic
TGACGGTGCACAAGATAAGA+AGG 0.563113 7_3:-52079817 Msa1108810:CDS
TTCGCAGCCCTGCATTTCAG+AGG 0.564752 7_3:+52080493 Msa1108800:CDS
CAAATGTAGGCCAGGATGTG+TGG 0.571344 7_3:-52079669 Msa1108810:CDS
AGGAGCATGATGAGGTGGCA+AGG 0.573766 7_3:-52079615 Msa1108810:CDS
AAGGAATCTGATTGGTTCTG+TGG 0.575989 7_3:+52079738 Msa1108800:CDS
ACAAATGAAAGAATCACTGC+TGG 0.590287 7_3:-52080792 None:intergenic
CATTTCAGAGGTTTGCAGTG+AGG 0.594381 7_3:+52080505 Msa1108800:CDS
CTGCAAACCTCTGAAATGCA+GGG 0.596012 7_3:-52080500 None:intergenic
AGAAAACAGTGACACGTGCG+AGG 0.596427 7_3:-52077498 None:intergenic
TGTAGGCCAGGATGTGTGGA+AGG 0.606416 7_3:-52079665 Msa1108810:CDS
CTGTGGCCAGCAGACTGCAG+AGG 0.618115 7_3:+52079755 Msa1108800:CDS
GAGCATGATGAGGTGGCAAG+GGG 0.639416 7_3:-52079613 Msa1108810:CDS
AAAGAAGGAGCATGATGAGG+TGG 0.640320 7_3:-52079620 Msa1108810:CDS
GAAAACAGTGACACGTGCGA+GGG 0.657689 7_3:-52077497 None:intergenic
CCATCTACGTTGTAGGCCAG+AGG 0.660322 7_3:-52079706 Msa1108810:intron
CTAATGTTAATGTTTCATCG+TGG 0.693022 7_3:+52080469 Msa1108800:CDS
ACACGTGCGAGGGTTATTGG+GGG 0.720119 7_3:-52077487 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGTATTTCAAAATTA+AGG - chr7_3:52078273-52078292 None:intergenic 10.0%
!!! CATTTTTTAATTATAGAATT+AGG + chr7_3:52078286-52078305 Msa1108800:intron 10.0%
!!! TTTCTATTTTAAATTATTGA+AGG + chr7_3:52081020-52081039 Msa1108800:three_prime_UTR 10.0%
!!! TATATTGTACTAAGTTTTTT+GGG - chr7_3:52077741-52077760 None:intergenic 15.0%
!!! TTATATTGTACTAAGTTTTT+TGG - chr7_3:52077742-52077761 None:intergenic 15.0%
!! TGCTGTATTAATAATTATAT+TGG - chr7_3:52078390-52078409 None:intergenic 15.0%
!! AATATAATTATTAATACAGC+AGG + chr7_3:52078389-52078408 Msa1108800:intron 15.0%
!! ATATAATTATTAATACAGCA+GGG + chr7_3:52078390-52078409 Msa1108800:intron 15.0%
!! AAAGAAAAAAAAATTAACAG+AGG - chr7_3:52079061-52079080 None:intergenic 15.0%
!! GTCATTATTAATAAGTTTAT+AGG + chr7_3:52079177-52079196 Msa1108800:intron 15.0%
!!! AATATTTTCTATTTTCAGAT+AGG + chr7_3:52080080-52080099 Msa1108800:intron 15.0%
!!! AAAAAAAACTAGGGTTTTTT+CGG - chr7_3:52077686-52077705 None:intergenic 20.0%
!!! ATATTGTACTAAGTTTTTTG+GGG - chr7_3:52077740-52077759 None:intergenic 20.0%
!! ACTTAGTACAATATAATTAG+AGG + chr7_3:52077746-52077765 Msa1108800:intron 20.0%
!!! TCATGAAAAGATTGAATTTT+TGG + chr7_3:52077797-52077816 Msa1108800:intron 20.0%
!! ATATAAAAAAAATCACCTGT+TGG - chr7_3:52077962-52077981 None:intergenic 20.0%
!! AATTGAAACAATCATATAAC+TGG - chr7_3:52078046-52078065 None:intergenic 20.0%
!! CAAAATTAAGGTGAAATTTA+TGG - chr7_3:52078261-52078280 None:intergenic 20.0%
!! TATAATTATTAATACAGCAG+GGG + chr7_3:52078391-52078410 Msa1108800:intron 20.0%
!!! ATTTTAGAAAAAGTAAGGTA+CGG + chr7_3:52078492-52078511 Msa1108800:intron 20.0%
!!! TGTATTTTTAGTGAAATTCA+CGG - chr7_3:52078701-52078720 None:intergenic 20.0%
!!! AAAATGATTTTAAGCCTATA+AGG + chr7_3:52079243-52079262 Msa1108800:intron 20.0%
!!! TTATTGTTGTTCTTAAATTC+TGG - chr7_3:52079389-52079408 None:intergenic 20.0%
!! AAAGTTATATAGGAATGTTT+AGG - chr7_3:52079565-52079584 None:intergenic 20.0%
!!! CTTTGTAACAATTATTTTCA+TGG - chr7_3:52079877-52079896 None:intergenic 20.0%
!! ACAAGATAACATAGAAAATT+GGG - chr7_3:52080280-52080299 None:intergenic 20.0%
!! TACAAGATAACATAGAAAAT+TGG - chr7_3:52080281-52080300 None:intergenic 20.0%
!! CAAAAATGAGAATCTTATAT+GGG - chr7_3:52080315-52080334 None:intergenic 20.0%
!! CTAAGTTCACATTATTATTA+AGG + chr7_3:52080340-52080359 Msa1108800:intron 20.0%
!! TATGGAAGAAATTTCAAAAA+AGG + chr7_3:52080539-52080558 Msa1108800:CDS 20.0%
!! ATGGAAGAAATTTCAAAAAA+GGG + chr7_3:52080540-52080559 Msa1108800:CDS 20.0%
!!! AACAAAAATGTAGTTGATTT+TGG + chr7_3:52080885-52080904 Msa1108800:three_prime_UTR 20.0%
!!! TTGGTTTTTACATAATGAAA+TGG + chr7_3:52080904-52080923 Msa1108800:three_prime_UTR 20.0%
!!! TGGTTTTTACATAATGAAAT+GGG + chr7_3:52080905-52080924 Msa1108800:three_prime_UTR 20.0%
!!! TATTGTACTAAGTTTTTTGG+GGG - chr7_3:52077739-52077758 None:intergenic 25.0%
! ATTAGAGGTGAATTGTTATA+TGG + chr7_3:52077761-52077780 Msa1108800:intron 25.0%
! TTAGAGGTGAATTGTTATAT+GGG + chr7_3:52077762-52077781 Msa1108800:intron 25.0%
!!! TTTTTGAGATTGTGATTGTA+AGG + chr7_3:52078015-52078034 Msa1108800:intron 25.0%
! ACAAAAATCTAAGAAATTGG+AGG - chr7_3:52078094-52078113 None:intergenic 25.0%
!! TCCAATTTCTTAGATTTTTG+TGG + chr7_3:52078093-52078112 Msa1108800:intron 25.0%
! TCCACAAAAATCTAAGAAAT+TGG - chr7_3:52078097-52078116 None:intergenic 25.0%
!!! AAACATCATTAGTTGATGAT+TGG + chr7_3:52078210-52078229 Msa1108800:intron 25.0%
!! AATTATATTGGTTGCAATAG+TGG - chr7_3:52078378-52078397 None:intergenic 25.0%
! ATAATTATTAATACAGCAGG+GGG + chr7_3:52078392-52078411 Msa1108800:intron 25.0%
!!! TTTTAGAAAAAGTAAGGTAC+GGG + chr7_3:52078493-52078512 Msa1108800:intron 25.0%
! AACAAGGATATGATTTCAAA+CGG - chr7_3:52078826-52078845 None:intergenic 25.0%
! ATGAATCAAAATTCAGAACA+CGG - chr7_3:52079037-52079056 None:intergenic 25.0%
! AGAAGTTGGATATCTTATTA+TGG + chr7_3:52079353-52079372 Msa1108800:intron 25.0%
! GAAGTTGGATATCTTATTAT+GGG + chr7_3:52079354-52079373 Msa1108800:intron 25.0%
! ATATCTTATTATGGGTGTTA+GGG + chr7_3:52079362-52079381 Msa1108800:intron 25.0%
! ATGAAAAATAGCTGAAAACT+AGG + chr7_3:52079438-52079457 Msa1108800:intron 25.0%
! TGAAAAATAGCTGAAAACTA+GGG + chr7_3:52079439-52079458 Msa1108800:intron 25.0%
! AAGGAAGAATATGAAAAAGA+AGG - chr7_3:52079638-52079657 Msa1108810:CDS 25.0%
!! TTTACAGTTTTTGCTACAAT+AGG + chr7_3:52080249-52080268 Msa1108800:intron 25.0%
! GCAAAAATGAGAATCTTATA+TGG - chr7_3:52080316-52080335 None:intergenic 25.0%
!! ATTATTATTAAGGTGCTCAT+GGG + chr7_3:52080350-52080369 Msa1108800:intron 25.0%
! AACATTAACATTAGAAGTGA+TGG - chr7_3:52080463-52080482 None:intergenic 25.0%
!!! TGTATTACCTCCATTTTTTT+CGG - chr7_3:52080683-52080702 None:intergenic 25.0%
! TAGTATTCTAATCTTGTCTT+TGG - chr7_3:52080962-52080981 None:intergenic 25.0%
TGAAGTTGAGGAAAAAAACA+TGG + chr7_3:52077870-52077889 Msa1108800:exon 30.0%
ATTGTTTCAATTGAGAGAGA+GGG + chr7_3:52078054-52078073 Msa1108800:intron 30.0%
! TTCTTAGATTTTTGTGGAGT+TGG + chr7_3:52078099-52078118 Msa1108800:intron 30.0%
!! TTGATGATTGGTGTCAAAAA+TGG + chr7_3:52078222-52078241 Msa1108800:intron 30.0%
TAATTATTAATACAGCAGGG+GGG + chr7_3:52078393-52078412 Msa1108800:intron 30.0%
AACTAAAACCTATGTTGCAT+AGG + chr7_3:52078419-52078438 Msa1108800:intron 30.0%
!! CGGCAATTTTAGAAAAAGTA+AGG + chr7_3:52078487-52078506 Msa1108800:intron 30.0%
TACAATAATGAGCAGAAATG+AGG + chr7_3:52078717-52078736 Msa1108800:intron 30.0%
TATGATTTCAAACGGCATAT+GGG - chr7_3:52078818-52078837 None:intergenic 30.0%
ATATGATTTCAAACGGCATA+TGG - chr7_3:52078819-52078838 None:intergenic 30.0%
GTTGTTATCTTTGTATAGGT+AGG - chr7_3:52078856-52078875 None:intergenic 30.0%
ATTCAACAGGTTCAAAGTAA+AGG - chr7_3:52078881-52078900 None:intergenic 30.0%
TACACGTATTAACAGAAAGT+GGG - chr7_3:52079004-52079023 None:intergenic 30.0%
ATACACGTATTAACAGAAAG+TGG - chr7_3:52079005-52079024 None:intergenic 30.0%
CTGTTATAGGTATCAATCTT+AGG + chr7_3:52079089-52079108 Msa1108800:intron 30.0%
TAGGTATCAATCTTAGGTAA+TGG + chr7_3:52079095-52079114 Msa1108800:intron 30.0%
! TCAATCTTAGGTAATGGTAT+TGG + chr7_3:52079101-52079120 Msa1108800:intron 30.0%
! TCAGTTTCTTTAAGCCTTAT+AGG - chr7_3:52079260-52079279 None:intergenic 30.0%
TTAGAAATCAGAACACACAT+AGG + chr7_3:52079295-52079314 Msa1108800:intron 30.0%
AAAAGACAACAGAAAGAAGT+TGG + chr7_3:52079339-52079358 Msa1108800:intron 30.0%
GATATCTTATTATGGGTGTT+AGG + chr7_3:52079361-52079380 Msa1108800:intron 30.0%
GAACTTGCAAAATCTGTTAT+GGG - chr7_3:52079524-52079543 None:intergenic 30.0%
CACATGACTGAAAGTTATAT+AGG - chr7_3:52079575-52079594 None:intergenic 30.0%
TTCAAAAGAAGGAATCTGAT+TGG + chr7_3:52079730-52079749 Msa1108800:CDS 30.0%
TCTCAACTCTCTAATATTGA+CGG - chr7_3:52079837-52079856 Msa1108810:CDS 30.0%
GTCTGCTTATTAAGAATCAA+AGG - chr7_3:52079905-52079924 None:intergenic 30.0%
! GTAAGAGCATAGACAATAAT+AGG + chr7_3:52079933-52079952 Msa1108800:intron 30.0%
AGACCAAATTAGAGTAGTTT+AGG + chr7_3:52079983-52080002 Msa1108800:intron 30.0%
! ATAGGACGTTTTTCTCTTAA+TGG + chr7_3:52080098-52080117 Msa1108800:intron 30.0%
AGAATCTTATATGGGATGAA+TGG - chr7_3:52080307-52080326 None:intergenic 30.0%
! CATTATTATTAAGGTGCTCA+TGG + chr7_3:52080349-52080368 Msa1108800:intron 30.0%
AATTCAAAAGCAGGAAAACT+TGG - chr7_3:52080376-52080395 None:intergenic 30.0%
!! TCCTGCTTTTGAATTATCTA+AGG + chr7_3:52080381-52080400 Msa1108800:intron 30.0%
TCCTTAGATAATTCAAAAGC+AGG - chr7_3:52080385-52080404 None:intergenic 30.0%
! GTTTTTATTGCATTGTCCTT+AGG + chr7_3:52080428-52080447 Msa1108800:intron 30.0%
CTAATGTTAATGTTTCATCG+TGG + chr7_3:52080469-52080488 Msa1108800:CDS 30.0%
TATTGACCATGTGAACAAAT+CGG + chr7_3:52080588-52080607 Msa1108800:intron 30.0%
CATAATGAAATGGGATGTAA+TGG + chr7_3:52080914-52080933 Msa1108800:three_prime_UTR 30.0%
!!! CTCTTTCATTTTTTGCGGAT+AGG + chr7_3:52077426-52077445 Msa1108800:five_prime_UTR 35.0%
!! CTTGATGGATTGTGATGTTA+GGG - chr7_3:52077600-52077619 None:intergenic 35.0%
GAGATAATTGCAAACCTTGA+TGG - chr7_3:52077615-52077634 None:intergenic 35.0%
! TCTTATGCAGTTTGAAGTTG+AGG + chr7_3:52077858-52077877 Msa1108800:intron 35.0%
!!! TGGTGGCAATTTTTTGCATA+GGG + chr7_3:52077894-52077913 Msa1108800:CDS 35.0%
CTCTTACTTTGTCAATGAAG+TGG + chr7_3:52077921-52077940 Msa1108800:CDS 35.0%
GTCAATGAAGTGGTTGTTAA+TGG + chr7_3:52077931-52077950 Msa1108800:CDS 35.0%
GATTGTTTCAATTGAGAGAG+AGG + chr7_3:52078053-52078072 Msa1108800:intron 35.0%
AAACCTATGTTGCATAGGTA+CGG + chr7_3:52078424-52078443 Msa1108800:intron 35.0%
TCTTTGTATAGGTAGGAAGT+AGG - chr7_3:52078849-52078868 None:intergenic 35.0%
GGTGGTTGTTATCTTTGTAT+AGG - chr7_3:52078860-52078879 None:intergenic 35.0%
TGATACCTATAACAGTCACA+GGG - chr7_3:52079084-52079103 None:intergenic 35.0%
TTGATACCTATAACAGTCAC+AGG - chr7_3:52079085-52079104 None:intergenic 35.0%
GTGTGTTCTGATTTCTAACT+TGG - chr7_3:52079293-52079312 None:intergenic 35.0%
CAAAATCTGTTATGGGAACA+GGG - chr7_3:52079517-52079536 None:intergenic 35.0%
GGAACTTGCAAAATCTGTTA+TGG - chr7_3:52079525-52079544 None:intergenic 35.0%
! TATAGGAATGTTTAGGACAG+AGG - chr7_3:52079558-52079577 None:intergenic 35.0%
CCTAATATGGGTTCAAATGT+AGG - chr7_3:52079685-52079704 Msa1108810:CDS 35.0%
CCTACATTTGAACCCATATT+AGG + chr7_3:52079682-52079701 Msa1108800:CDS 35.0%
CTTCAAAGCACAACGAAAAT+TGG - chr7_3:52079965-52079984 None:intergenic 35.0%
GAGCCTAAACTACTCTAATT+TGG - chr7_3:52079989-52080008 None:intergenic 35.0%
!! AGTAGTTTAGGCTCTAAACT+AGG + chr7_3:52079995-52080014 Msa1108800:intron 35.0%
GTCCAATAGTTAGAGATAGA+GGG - chr7_3:52080149-52080168 None:intergenic 35.0%
AGTCCAATAGTTAGAGATAG+AGG - chr7_3:52080150-52080169 None:intergenic 35.0%
AAAGACGGTTGATCATATGA+AGG - chr7_3:52080175-52080194 None:intergenic 35.0%
! AAACTGTAAAGTGCCATCTT+AGG - chr7_3:52080239-52080258 None:intergenic 35.0%
AGTGAGGACATCAAAGAATA+TGG + chr7_3:52080521-52080540 Msa1108800:CDS 35.0%
ATTGACCATGTGAACAAATC+GGG + chr7_3:52080589-52080608 Msa1108800:intron 35.0%
!! GGTTGACTTTTGTGTTATTC+TGG + chr7_3:52080610-52080629 Msa1108800:intron 35.0%
AAAGGACCTTCCGAAAAAAA+TGG + chr7_3:52080670-52080689 Msa1108800:CDS 35.0%
!!! TTACCTCCATTTTTTTCGGA+AGG - chr7_3:52080679-52080698 None:intergenic 35.0%
ACAAATGAAAGAATCACTGC+TGG - chr7_3:52080795-52080814 None:intergenic 35.0%
AGCAGTGATTCTTTCATTTG+TGG + chr7_3:52080794-52080813 Msa1108800:exon 35.0%
GGGAAGATTGAAGATGTTTC+TGG - chr7_3:52077580-52077599 None:intergenic 40.0%
!! CCTTGATGGATTGTGATGTT+AGG - chr7_3:52077601-52077620 None:intergenic 40.0%
CCTAACATCACAATCCATCA+AGG + chr7_3:52077598-52077617 Msa1108800:five_prime_UTR 40.0%
GTTGAGGAAAAAAACATGGC+TGG + chr7_3:52077874-52077893 Msa1108800:exon 40.0%
!!! CTGGTGGCAATTTTTTGCAT+AGG + chr7_3:52077893-52077912 Msa1108800:CDS 40.0%
! TTGTTAATGGTCTTGCCAAC+AGG + chr7_3:52077944-52077963 Msa1108800:CDS 40.0%
ACGAGCATGTGAATCTAACT+AGG - chr7_3:52078176-52078195 None:intergenic 40.0%
CATGCTAAGACATTGTCATG+TGG + chr7_3:52078320-52078339 Msa1108800:intron 40.0%
AACCTATGTTGCATAGGTAC+GGG + chr7_3:52078425-52078444 Msa1108800:intron 40.0%
!! GGTTTTAGTCTCTCAAGCAT+GGG - chr7_3:52078797-52078816 None:intergenic 40.0%
ATAGGTAGGAAGTAGGAACA+AGG - chr7_3:52078842-52078861 None:intergenic 40.0%
CAACAGGTTCAAAGTAAAGG+TGG - chr7_3:52078878-52078897 None:intergenic 40.0%
AAGACTTGTGAGAAGTGGTT+GGG - chr7_3:52078909-52078928 None:intergenic 40.0%
TCTTTCCCTGTGACTGTTAT+AGG + chr7_3:52079076-52079095 Msa1108800:intron 40.0%
! GAACACACATAGGAAAGCAT+AGG + chr7_3:52079305-52079324 Msa1108800:intron 40.0%
! AGCATTGCTCTGTGTCATTA+AGG - chr7_3:52079476-52079495 None:intergenic 40.0%
CAGGGTAATAAGTTCTCTCA+AGG - chr7_3:52079499-52079518 None:intergenic 40.0%
GCAAAATCTGTTATGGGAAC+AGG - chr7_3:52079518-52079537 None:intergenic 40.0%
TAGGACAGAGGAATCATTCT+AGG - chr7_3:52079546-52079565 None:intergenic 40.0%
! GAAAAAGAAGGAGCATGATG+AGG - chr7_3:52079626-52079645 Msa1108810:CDS 40.0%
ATGTGTGGAAGGTTTGCATA+AGG - chr7_3:52079657-52079676 Msa1108810:CDS 40.0%
TTTGAACCCATCTACGTTGT+AGG - chr7_3:52079716-52079735 Msa1108810:intron 40.0%
! ACGTAGATGGGTTCAAAAGA+AGG + chr7_3:52079719-52079738 Msa1108800:CDS 40.0%
!! AAGGAATCTGATTGGTTCTG+TGG + chr7_3:52079738-52079757 Msa1108800:CDS 40.0%
! CAACTAAGCCTTATCCTACT+AGG + chr7_3:52080028-52080047 Msa1108800:intron 40.0%
CTATTCCACCTAGTAGGATA+AGG - chr7_3:52080039-52080058 None:intergenic 40.0%
CTTATCCTACTAGGTGGAAT+AGG + chr7_3:52080037-52080056 Msa1108800:intron 40.0%
TAAAGCCTATTCCACCTAGT+AGG - chr7_3:52080045-52080064 None:intergenic 40.0%
ACTAGGTGGAATAGGCTTTA+TGG + chr7_3:52080045-52080064 Msa1108800:intron 40.0%
CTCCCTCTATCTCTAACTAT+TGG + chr7_3:52080144-52080163 Msa1108800:intron 40.0%
CATAGAACCAGATGCAAAGA+CGG - chr7_3:52080190-52080209 None:intergenic 40.0%
!! GTCTTTGCATCTGGTTCTAT+GGG + chr7_3:52080189-52080208 Msa1108800:intron 40.0%
GTGATGGTAATAAGCACCTA+AGG - chr7_3:52080447-52080466 None:intergenic 40.0%
AGAGTTAGCTGAGCAGATAA+AGG + chr7_3:52080652-52080671 Msa1108800:CDS 40.0%
GAGGAAAAAAACATGGCTGG+TGG + chr7_3:52077877-52077896 Msa1108800:exon 45.0%
GCTAAGACATTGTCATGTGG+TGG + chr7_3:52078323-52078342 Msa1108800:intron 45.0%
CATTGTCATGTGGTGGTTTG+TGG + chr7_3:52078330-52078349 Msa1108800:intron 45.0%
TACCCGTACCTATGCAACAT+AGG - chr7_3:52078430-52078449 None:intergenic 45.0%
ATGTTGCATAGGTACGGGTA+TGG + chr7_3:52078430-52078449 Msa1108800:intron 45.0%
TACCGATACGCGTATCTTAC+CGG - chr7_3:52078459-52078478 None:intergenic 45.0%
TAACGATGAAGAACCCGTAC+CGG - chr7_3:52078766-52078785 None:intergenic 45.0%
!! GGGTTTTAGTCTCTCAAGCA+TGG - chr7_3:52078798-52078817 None:intergenic 45.0%
AGACTTGTGAGAAGTGGTTG+GGG - chr7_3:52078908-52078927 None:intergenic 45.0%
CAAGACTTGTGAGAAGTGGT+TGG - chr7_3:52078910-52078929 None:intergenic 45.0%
! CAGTCATGTGCTGCTCAATT+TGG + chr7_3:52079585-52079604 Msa1108800:intron 45.0%
! AAAGAAGGAGCATGATGAGG+TGG - chr7_3:52079623-52079642 Msa1108810:CDS 45.0%
TATGGGTTCAAATGTAGGCC+AGG - chr7_3:52079680-52079699 Msa1108810:CDS 45.0%
TGAACCCATATTAGGACCTC+TGG + chr7_3:52079690-52079709 Msa1108800:CDS 45.0%
TAGGCCAGAGGTCCTAATAT+GGG - chr7_3:52079697-52079716 Msa1108810:intron 45.0%
TGACGGTGCACAAGATAAGA+AGG - chr7_3:52079820-52079839 Msa1108810:CDS 45.0%
! CTAAGCCTTATCCTACTAGG+TGG + chr7_3:52080031-52080050 Msa1108800:intron 45.0%
TGATCAACCGTCTTTGCATC+TGG + chr7_3:52080180-52080199 Msa1108800:intron 45.0%
!! CGTCTTTGCATCTGGTTCTA+TGG + chr7_3:52080188-52080207 Msa1108800:intron 45.0%
AAGTGCCATCTTAGGTGGTT+CGG - chr7_3:52080231-52080250 None:intergenic 45.0%
! CTGTAAAGTGCCATCTTAGG+TGG - chr7_3:52080236-52080255 None:intergenic 45.0%
!! CTGCAAACCTCTGAAATGCA+GGG - chr7_3:52080503-52080522 None:intergenic 45.0%
!! ACTGCAAACCTCTGAAATGC+AGG - chr7_3:52080504-52080523 None:intergenic 45.0%
CATTTCAGAGGTTTGCAGTG+AGG + chr7_3:52080505-52080524 Msa1108800:CDS 45.0%
! GTCAACCCGATTTGTTCACA+TGG - chr7_3:52080597-52080616 None:intergenic 45.0%
GGACCTTCCGAAAAAAATGG+AGG + chr7_3:52080673-52080692 Msa1108800:CDS 45.0%
! ATTTGTGGCTGCTTTGCTGA+AGG + chr7_3:52080809-52080828 Msa1108800:three_prime_UTR 45.0%
! TTTGTGGCTGCTTTGCTGAA+GGG + chr7_3:52080810-52080829 Msa1108800:three_prime_UTR 45.0%
!! ATAATTAAAAAAAAAAACTA+GGG - chr7_3:52077695-52077714 None:intergenic 5.0%
!! AATAATTAAAAAAAAAAACT+AGG - chr7_3:52077696-52077715 None:intergenic 5.0%
!!! ATTTATTTAATTTTGAATTT+TGG + chr7_3:52077833-52077852 Msa1108800:intron 5.0%
TGACACGTGCGAGGGTTATT+GGG - chr7_3:52077492-52077511 None:intergenic 50.0%
GAAAACAGTGACACGTGCGA+GGG - chr7_3:52077500-52077519 None:intergenic 50.0%
AGAAAACAGTGACACGTGCG+AGG - chr7_3:52077501-52077520 None:intergenic 50.0%
GTGGTGCAATGCATAAGCTG+CGG - chr7_3:52078359-52078378 None:intergenic 50.0%
ATAGGTACGGGTATGGTACC+CGG + chr7_3:52078437-52078456 Msa1108800:intron 50.0%
ACCCGGTAAGATACGCGTAT+CGG + chr7_3:52078454-52078473 Msa1108800:intron 50.0%
ACCGATACGCGTATCTTACC+GGG - chr7_3:52078458-52078477 None:intergenic 50.0%
! CGCGTATCGGTACGAGAATA+CGG + chr7_3:52078467-52078486 Msa1108800:intron 50.0%
AACGATGAAGAACCCGTACC+GGG - chr7_3:52078765-52078784 None:intergenic 50.0%
! TGGTTGGGGGTTGATTCAAC+AGG - chr7_3:52078894-52078913 None:intergenic 50.0%
GACTTGTGAGAAGTGGTTGG+GGG - chr7_3:52078907-52078926 None:intergenic 50.0%
GACGCAAGACTTGTGAGAAG+TGG - chr7_3:52078914-52078933 None:intergenic 50.0%
CTTCTCACAAGTCTTGCGTC+TGG + chr7_3:52078914-52078933 Msa1108800:intron 50.0%
TGGGTGAAACACATCAGCAC+GGG - chr7_3:52078985-52079004 None:intergenic 50.0%
GTGGGTGAAACACATCAGCA+CGG - chr7_3:52078986-52079005 None:intergenic 50.0%
TGCAAACCTTCCACACATCC+TGG + chr7_3:52079659-52079678 Msa1108800:CDS 50.0%
CAAATGTAGGCCAGGATGTG+TGG - chr7_3:52079672-52079691 Msa1108810:CDS 50.0%
GTAGGCCAGAGGTCCTAATA+TGG - chr7_3:52079698-52079717 Msa1108810:intron 50.0%
CTCTGGCCTACAACGTAGAT+GGG + chr7_3:52079707-52079726 Msa1108800:CDS 50.0%
CATGTCCGAACCACCTAAGA+TGG + chr7_3:52080223-52080242 Msa1108800:intron 50.0%
ACACGTGCGAGGGTTATTGG+GGG - chr7_3:52077490-52077509 None:intergenic 55.0%
GACACGTGCGAGGGTTATTG+GGG - chr7_3:52077491-52077510 None:intergenic 55.0%
GTGACACGTGCGAGGGTTAT+TGG - chr7_3:52077493-52077512 None:intergenic 55.0%
GTGCAATGCATAAGCTGCGG+CGG - chr7_3:52078356-52078375 None:intergenic 55.0%
! ACGAGTACCGTACACGTACC+CGG + chr7_3:52078744-52078763 Msa1108800:intron 55.0%
TACCGTACACGTACCCGGTA+CGG + chr7_3:52078749-52078768 Msa1108800:intron 55.0%
CTGACGACAAACACGAGGCT+TGG - chr7_3:52078940-52078959 None:intergenic 55.0%
GTCTGCTGACGACAAACACG+AGG - chr7_3:52078945-52078964 None:intergenic 55.0%
GAGCATGATGAGGTGGCAAG+GGG - chr7_3:52079616-52079635 Msa1108810:CDS 55.0%
GGAGCATGATGAGGTGGCAA+GGG - chr7_3:52079617-52079636 Msa1108810:CDS 55.0%
! AGGAGCATGATGAGGTGGCA+AGG - chr7_3:52079618-52079637 Msa1108810:CDS 55.0%
TGTAGGCCAGGATGTGTGGA+AGG - chr7_3:52079668-52079687 Msa1108810:CDS 55.0%
CCATCTACGTTGTAGGCCAG+AGG - chr7_3:52079709-52079728 Msa1108810:intron 55.0%
CCTCTGGCCTACAACGTAGA+TGG + chr7_3:52079706-52079725 Msa1108800:CDS 55.0%
AGCAGACTGCAGAGGCAGAA+GGG + chr7_3:52079763-52079782 Msa1108800:CDS 55.0%
! AGGCAGAAGGGCATGGCAAT+TGG + chr7_3:52079775-52079794 Msa1108800:CDS 55.0%
TTCGCAGCCCTGCATTTCAG+AGG + chr7_3:52080493-52080512 Msa1108800:CDS 55.0%
GGGTACGTGTACGGTACTCG+TGG - chr7_3:52078745-52078764 None:intergenic 60.0%
ACCGTACACGTACCCGGTAC+GGG + chr7_3:52078750-52078769 Msa1108800:intron 60.0%
ACCCGTACCGGGTACGTGTA+CGG - chr7_3:52078754-52078773 None:intergenic 60.0%
CTTCTGCCTCTGCAGTCTGC+TGG - chr7_3:52079764-52079783 Msa1108810:intron 60.0%
CAGCAGACTGCAGAGGCAGA+AGG + chr7_3:52079762-52079781 Msa1108800:CDS 60.0%
ACTGCAGAGGCAGAAGGGCA+TGG + chr7_3:52079768-52079787 Msa1108800:CDS 60.0%
GTCGTCAGCAGACCCTCCAC+TGG + chr7_3:52078952-52078971 Msa1108800:intron 65.0%
TCAGCAGACCCTCCACTGGC+TGG + chr7_3:52078956-52078975 Msa1108800:intron 65.0%
! ACGGGTTGCCAGCCAGTGGA+GGG - chr7_3:52078967-52078986 None:intergenic 65.0%
CTGTGGCCAGCAGACTGCAG+AGG + chr7_3:52079755-52079774 Msa1108800:CDS 65.0%
! CACGGGTTGCCAGCCAGTGG+AGG - chr7_3:52078968-52078987 None:intergenic 70.0%
! CAGCACGGGTTGCCAGCCAG+TGG - chr7_3:52078971-52078990 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 52077422 52081110 52077422 ID=Msa1108800;Name=Msa1108800
chr7_3 mRNA 52077422 52081110 52077422 ID=Msa1108800-mRNA-1;Parent=Msa1108800;Name=Msa1108800-mRNA-1;_AED=0.17;_eAED=0.17;_QI=219|0.6|0.66|0.83|0.2|0.5|6|309|169
chr7_3 exon 52077422 52077619 52077422 ID=Msa1108800-mRNA-1:exon:10777;Parent=Msa1108800-mRNA-1
chr7_3 exon 52077868 52077965 52077868 ID=Msa1108800-mRNA-1:exon:10778;Parent=Msa1108800-mRNA-1
chr7_3 exon 52079588 52079828 52079588 ID=Msa1108800-mRNA-1:exon:10779;Parent=Msa1108800-mRNA-1
chr7_3 exon 52080450 52080561 52080450 ID=Msa1108800-mRNA-1:exon:10780;Parent=Msa1108800-mRNA-1
chr7_3 exon 52080636 52080694 52080636 ID=Msa1108800-mRNA-1:exon:10781;Parent=Msa1108800-mRNA-1
chr7_3 exon 52080781 52081110 52080781 ID=Msa1108800-mRNA-1:exon:10782;Parent=Msa1108800-mRNA-1
chr7_3 five_prime_UTR 52077422 52077619 52077422 ID=Msa1108800-mRNA-1:five_prime_utr;Parent=Msa1108800-mRNA-1
chr7_3 five_prime_UTR 52077868 52077888 52077868 ID=Msa1108800-mRNA-1:five_prime_utr;Parent=Msa1108800-mRNA-1
chr7_3 CDS 52077889 52077965 52077889 ID=Msa1108800-mRNA-1:cds;Parent=Msa1108800-mRNA-1
chr7_3 CDS 52079588 52079828 52079588 ID=Msa1108800-mRNA-1:cds;Parent=Msa1108800-mRNA-1
chr7_3 CDS 52080450 52080561 52080450 ID=Msa1108800-mRNA-1:cds;Parent=Msa1108800-mRNA-1
chr7_3 CDS 52080636 52080694 52080636 ID=Msa1108800-mRNA-1:cds;Parent=Msa1108800-mRNA-1
chr7_3 CDS 52080781 52080801 52080781 ID=Msa1108800-mRNA-1:cds;Parent=Msa1108800-mRNA-1
chr7_3 three_prime_UTR 52080802 52081110 52080802 ID=Msa1108800-mRNA-1:three_prime_utr;Parent=Msa1108800-mRNA-1
Gene Sequence

>Msa1108800

ATGGCTGGTGGCAATTTTTTGCATAGGGTTATCTCTTACTTTGTCAATGAAGTGGTTGTTAATGGTCTTGCCAACAGTCATGTGCTGCTCAATTTGGTTATGCCCCTTGCCACCTCATCATGCTCCTTCTTTTTCATATTCTTCCTTATGCAAACCTTCCACACATCCTGGCCTACATTTGAACCCATATTAGGACCTCTGGCCTACAACGTAGATGGGTTCAAAAGAAGGAATCTGATTGGTTCTGTGGCCAGCAGACTGCAGAGGCAGAAGGGCATGGCAATTGGCGAACACTCACATTCTTATCCTTCTTATCTTGTGCTTATTACCATCACTTCTAATGTTAATGTTTCATCGTGGATTCGCAGCCCTGCATTTCAGAGGTTTGCAGTGAGGACATCAAAGAATATGGAAGAAATTTCAAAAAAGGCTATTCAAACGCAGAAAGAGTTAGCTGAGCAGATAAAGGACCTTCCGAAAAAAATGGAGTCTTTCAAGAACCAGCAGTGA

Protein sequence

>Msa1108800

MAGGNFLHRVISYFVNEVVVNGLANSHVLLNLVMPLATSSCSFFFIFFLMQTFHTSWPTFEPILGPLAYNVDGFKRRNLIGSVASRLQRQKGMAIGEHSHSYPSYLVLITITSNVNVSSWIRSPAFQRFAVRTSKNMEEISKKAIQTQKELAEQIKDLPKKMESFKNQQ*