Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1108800 | XP_013449168.1 | 71.429 | 77 | 17 | 1 | 93 | 169 | 1 | 72 | 2.01e-24 | 100 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1108800 | A0A072UBG8 | 71.429 | 77 | 17 | 1 | 93 | 169 | 1 | 72 | 9.59e-25 | 100 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006880 | Msa1108800 | 0.801496 | 8.761161e-49 | -8.615850e-47 |
Msa0055100 | Msa1108800 | 0.803048 | 4.199010e-49 | -8.615850e-47 |
Msa0090030 | Msa1108800 | 0.815038 | 1.134418e-51 | -8.615850e-47 |
Msa0100800 | Msa1108800 | 0.827025 | 1.964143e-54 | -8.615850e-47 |
Msa0131450 | Msa1108800 | 0.811283 | 7.565991e-51 | -8.615850e-47 |
Msa0166750 | Msa1108800 | 0.827164 | 1.819880e-54 | -8.615850e-47 |
Msa0211650 | Msa1108800 | 0.808537 | 2.949539e-50 | -8.615850e-47 |
Msa0384880 | Msa1108800 | 0.801068 | 1.071661e-48 | -8.615850e-47 |
Msa0403190 | Msa1108800 | 0.820431 | 6.882716e-53 | -8.615850e-47 |
Msa0439890 | Msa1108800 | 0.808772 | 2.627341e-50 | -8.615850e-47 |
Msa1025940 | Msa1108800 | 0.819834 | 9.433554e-53 | -8.615850e-47 |
Msa1030930 | Msa1108800 | 0.802354 | 5.837973e-49 | -8.615850e-47 |
Msa1070050 | Msa1108800 | 0.816424 | 5.571127e-52 | -8.615850e-47 |
Msa1073400 | Msa1108800 | 0.812813 | 3.510657e-51 | -8.615850e-47 |
Msa1083880 | Msa1108800 | 0.818877 | 1.558367e-52 | -8.615850e-47 |
Msa1108800 | Msa1173900 | 0.800528 | 1.381642e-48 | -8.615850e-47 |
Msa1108800 | Msa1179980 | 0.800540 | 1.373791e-48 | -8.615850e-47 |
Msa1108800 | Msa1201830 | 0.805685 | 1.184967e-49 | -8.615850e-47 |
Msa1108800 | Msa1207730 | 0.811251 | 7.686243e-51 | -8.615850e-47 |
Msa1108800 | Msa1253810 | 0.803330 | 3.669630e-49 | -8.615850e-47 |
Msa1108800 | Msa1294840 | 0.811527 | 6.697329e-51 | -8.615850e-47 |
Msa1108800 | Msa1306990 | 0.802207 | 6.259327e-49 | -8.615850e-47 |
Msa1108800 | Msa1365860 | 0.814614 | 1.408530e-51 | -8.615850e-47 |
Msa0527910 | Msa1108800 | 0.802868 | 4.573607e-49 | -8.615850e-47 |
Msa0550570 | Msa1108800 | 0.802539 | 5.348240e-49 | -8.615850e-47 |
Msa0921870 | Msa1108800 | 0.806526 | 7.882755e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1108800 | MtrunA17_Chr7g0242711 | 71.429 | 77 | 17 | 1 | 93 | 169 | 1 | 72 | 1.85e-28 | 100 |
Msa1108800 | MtrunA17_Chr7g0242711 | 100.000 | 26 | 0 | 0 | 1 | 26 | 1 | 26 | 5.72e-12 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 58 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGAAGATTGAAGATGTTTC+TGG | 0.207138 | 7_3:-52077577 | None:intergenic |
CAGTCATGTGCTGCTCAATT+TGG | 0.222969 | 7_3:+52079585 | Msa1108800:intron |
GTGACACGTGCGAGGGTTAT+TGG | 0.244673 | 7_3:-52077490 | None:intergenic |
CCTACATTTGAACCCATATT+AGG | 0.245385 | 7_3:+52079682 | Msa1108800:CDS |
GAGATAATTGCAAACCTTGA+TGG | 0.285105 | 7_3:-52077612 | None:intergenic |
TAGTATTCTAATCTTGTCTT+TGG | 0.292395 | 7_3:-52080959 | None:intergenic |
GTCAATGAAGTGGTTGTTAA+TGG | 0.300803 | 7_3:+52077931 | Msa1108800:CDS |
TTTGAACCCATCTACGTTGT+AGG | 0.301925 | 7_3:-52079713 | Msa1108810:intron |
TGACACGTGCGAGGGTTATT+GGG | 0.311408 | 7_3:-52077489 | None:intergenic |
GTAGGCCAGAGGTCCTAATA+TGG | 0.325112 | 7_3:-52079695 | Msa1108810:intron |
CCTCTGGCCTACAACGTAGA+TGG | 0.356735 | 7_3:+52079706 | Msa1108800:CDS |
CCTTGATGGATTGTGATGTT+AGG | 0.359617 | 7_3:-52077598 | None:intergenic |
CTTCTGCCTCTGCAGTCTGC+TGG | 0.364855 | 7_3:-52079761 | Msa1108810:intron |
AGGCAGAAGGGCATGGCAAT+TGG | 0.365020 | 7_3:+52079775 | Msa1108800:CDS |
AGCAGTGATTCTTTCATTTG+TGG | 0.379898 | 7_3:+52080794 | Msa1108800:exon |
AGTGAGGACATCAAAGAATA+TGG | 0.394875 | 7_3:+52080521 | Msa1108800:CDS |
TGAACCCATATTAGGACCTC+TGG | 0.441728 | 7_3:+52079690 | Msa1108800:CDS |
ATTTGTGGCTGCTTTGCTGA+AGG | 0.444834 | 7_3:+52080809 | Msa1108800:three_prime_UTR |
TTGTTAATGGTCTTGCCAAC+AGG | 0.450630 | 7_3:+52077944 | Msa1108800:CDS |
AGAGTTAGCTGAGCAGATAA+AGG | 0.452139 | 7_3:+52080652 | Msa1108800:CDS |
TTCAAAAGAAGGAATCTGAT+TGG | 0.457150 | 7_3:+52079730 | Msa1108800:CDS |
CATAATGAAATGGGATGTAA+TGG | 0.458206 | 7_3:+52080914 | Msa1108800:three_prime_UTR |
CCTAATATGGGTTCAAATGT+AGG | 0.465263 | 7_3:-52079682 | Msa1108810:CDS |
ACTGCAAACCTCTGAAATGC+AGG | 0.473854 | 7_3:-52080501 | None:intergenic |
CTCTTACTTTGTCAATGAAG+TGG | 0.484729 | 7_3:+52077921 | Msa1108800:CDS |
TCTTATGCAGTTTGAAGTTG+AGG | 0.484755 | 7_3:+52077858 | Msa1108800:intron |
CTTGATGGATTGTGATGTTA+GGG | 0.489033 | 7_3:-52077597 | None:intergenic |
TGCAAACCTTCCACACATCC+TGG | 0.498949 | 7_3:+52079659 | Msa1108800:CDS |
TTTGTGGCTGCTTTGCTGAA+GGG | 0.500966 | 7_3:+52080810 | Msa1108800:three_prime_UTR |
ACGTAGATGGGTTCAAAAGA+AGG | 0.502051 | 7_3:+52079719 | Msa1108800:CDS |
CAGCAGACTGCAGAGGCAGA+AGG | 0.505027 | 7_3:+52079762 | Msa1108800:CDS |
AACATTAACATTAGAAGTGA+TGG | 0.507792 | 7_3:-52080460 | None:intergenic |
TATGGGTTCAAATGTAGGCC+AGG | 0.524583 | 7_3:-52079677 | Msa1108810:CDS |
CTCTGGCCTACAACGTAGAT+GGG | 0.533824 | 7_3:+52079707 | Msa1108800:CDS |
CCTAACATCACAATCCATCA+AGG | 0.536122 | 7_3:+52077598 | Msa1108800:five_prime_UTR |
ATGTGTGGAAGGTTTGCATA+AGG | 0.542275 | 7_3:-52079654 | Msa1108810:CDS |
GGAGCATGATGAGGTGGCAA+GGG | 0.544120 | 7_3:-52079614 | Msa1108810:CDS |
ACTGCAGAGGCAGAAGGGCA+TGG | 0.550633 | 7_3:+52079768 | Msa1108800:CDS |
AGCAGACTGCAGAGGCAGAA+GGG | 0.556522 | 7_3:+52079763 | Msa1108800:CDS |
TAGGCCAGAGGTCCTAATAT+GGG | 0.557022 | 7_3:-52079694 | Msa1108810:CDS |
GACACGTGCGAGGGTTATTG+GGG | 0.560328 | 7_3:-52077488 | None:intergenic |
TGACGGTGCACAAGATAAGA+AGG | 0.563113 | 7_3:-52079817 | Msa1108810:CDS |
TTCGCAGCCCTGCATTTCAG+AGG | 0.564752 | 7_3:+52080493 | Msa1108800:CDS |
CAAATGTAGGCCAGGATGTG+TGG | 0.571344 | 7_3:-52079669 | Msa1108810:CDS |
AGGAGCATGATGAGGTGGCA+AGG | 0.573766 | 7_3:-52079615 | Msa1108810:CDS |
AAGGAATCTGATTGGTTCTG+TGG | 0.575989 | 7_3:+52079738 | Msa1108800:CDS |
ACAAATGAAAGAATCACTGC+TGG | 0.590287 | 7_3:-52080792 | None:intergenic |
CATTTCAGAGGTTTGCAGTG+AGG | 0.594381 | 7_3:+52080505 | Msa1108800:CDS |
CTGCAAACCTCTGAAATGCA+GGG | 0.596012 | 7_3:-52080500 | None:intergenic |
AGAAAACAGTGACACGTGCG+AGG | 0.596427 | 7_3:-52077498 | None:intergenic |
TGTAGGCCAGGATGTGTGGA+AGG | 0.606416 | 7_3:-52079665 | Msa1108810:CDS |
CTGTGGCCAGCAGACTGCAG+AGG | 0.618115 | 7_3:+52079755 | Msa1108800:CDS |
GAGCATGATGAGGTGGCAAG+GGG | 0.639416 | 7_3:-52079613 | Msa1108810:CDS |
AAAGAAGGAGCATGATGAGG+TGG | 0.640320 | 7_3:-52079620 | Msa1108810:CDS |
GAAAACAGTGACACGTGCGA+GGG | 0.657689 | 7_3:-52077497 | None:intergenic |
CCATCTACGTTGTAGGCCAG+AGG | 0.660322 | 7_3:-52079706 | Msa1108810:intron |
CTAATGTTAATGTTTCATCG+TGG | 0.693022 | 7_3:+52080469 | Msa1108800:CDS |
ACACGTGCGAGGGTTATTGG+GGG | 0.720119 | 7_3:-52077487 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATGTATTTCAAAATTA+AGG | - | chr7_3:52078273-52078292 | None:intergenic | 10.0% |
!!! | CATTTTTTAATTATAGAATT+AGG | + | chr7_3:52078286-52078305 | Msa1108800:intron | 10.0% |
!!! | TTTCTATTTTAAATTATTGA+AGG | + | chr7_3:52081020-52081039 | Msa1108800:three_prime_UTR | 10.0% |
!!! | TATATTGTACTAAGTTTTTT+GGG | - | chr7_3:52077741-52077760 | None:intergenic | 15.0% |
!!! | TTATATTGTACTAAGTTTTT+TGG | - | chr7_3:52077742-52077761 | None:intergenic | 15.0% |
!! | TGCTGTATTAATAATTATAT+TGG | - | chr7_3:52078390-52078409 | None:intergenic | 15.0% |
!! | AATATAATTATTAATACAGC+AGG | + | chr7_3:52078389-52078408 | Msa1108800:intron | 15.0% |
!! | ATATAATTATTAATACAGCA+GGG | + | chr7_3:52078390-52078409 | Msa1108800:intron | 15.0% |
!! | AAAGAAAAAAAAATTAACAG+AGG | - | chr7_3:52079061-52079080 | None:intergenic | 15.0% |
!! | GTCATTATTAATAAGTTTAT+AGG | + | chr7_3:52079177-52079196 | Msa1108800:intron | 15.0% |
!!! | AATATTTTCTATTTTCAGAT+AGG | + | chr7_3:52080080-52080099 | Msa1108800:intron | 15.0% |
!!! | AAAAAAAACTAGGGTTTTTT+CGG | - | chr7_3:52077686-52077705 | None:intergenic | 20.0% |
!!! | ATATTGTACTAAGTTTTTTG+GGG | - | chr7_3:52077740-52077759 | None:intergenic | 20.0% |
!! | ACTTAGTACAATATAATTAG+AGG | + | chr7_3:52077746-52077765 | Msa1108800:intron | 20.0% |
!!! | TCATGAAAAGATTGAATTTT+TGG | + | chr7_3:52077797-52077816 | Msa1108800:intron | 20.0% |
!! | ATATAAAAAAAATCACCTGT+TGG | - | chr7_3:52077962-52077981 | None:intergenic | 20.0% |
!! | AATTGAAACAATCATATAAC+TGG | - | chr7_3:52078046-52078065 | None:intergenic | 20.0% |
!! | CAAAATTAAGGTGAAATTTA+TGG | - | chr7_3:52078261-52078280 | None:intergenic | 20.0% |
!! | TATAATTATTAATACAGCAG+GGG | + | chr7_3:52078391-52078410 | Msa1108800:intron | 20.0% |
!!! | ATTTTAGAAAAAGTAAGGTA+CGG | + | chr7_3:52078492-52078511 | Msa1108800:intron | 20.0% |
!!! | TGTATTTTTAGTGAAATTCA+CGG | - | chr7_3:52078701-52078720 | None:intergenic | 20.0% |
!!! | AAAATGATTTTAAGCCTATA+AGG | + | chr7_3:52079243-52079262 | Msa1108800:intron | 20.0% |
!!! | TTATTGTTGTTCTTAAATTC+TGG | - | chr7_3:52079389-52079408 | None:intergenic | 20.0% |
!! | AAAGTTATATAGGAATGTTT+AGG | - | chr7_3:52079565-52079584 | None:intergenic | 20.0% |
!!! | CTTTGTAACAATTATTTTCA+TGG | - | chr7_3:52079877-52079896 | None:intergenic | 20.0% |
!! | ACAAGATAACATAGAAAATT+GGG | - | chr7_3:52080280-52080299 | None:intergenic | 20.0% |
!! | TACAAGATAACATAGAAAAT+TGG | - | chr7_3:52080281-52080300 | None:intergenic | 20.0% |
!! | CAAAAATGAGAATCTTATAT+GGG | - | chr7_3:52080315-52080334 | None:intergenic | 20.0% |
!! | CTAAGTTCACATTATTATTA+AGG | + | chr7_3:52080340-52080359 | Msa1108800:intron | 20.0% |
!! | TATGGAAGAAATTTCAAAAA+AGG | + | chr7_3:52080539-52080558 | Msa1108800:CDS | 20.0% |
!! | ATGGAAGAAATTTCAAAAAA+GGG | + | chr7_3:52080540-52080559 | Msa1108800:CDS | 20.0% |
!!! | AACAAAAATGTAGTTGATTT+TGG | + | chr7_3:52080885-52080904 | Msa1108800:three_prime_UTR | 20.0% |
!!! | TTGGTTTTTACATAATGAAA+TGG | + | chr7_3:52080904-52080923 | Msa1108800:three_prime_UTR | 20.0% |
!!! | TGGTTTTTACATAATGAAAT+GGG | + | chr7_3:52080905-52080924 | Msa1108800:three_prime_UTR | 20.0% |
!!! | TATTGTACTAAGTTTTTTGG+GGG | - | chr7_3:52077739-52077758 | None:intergenic | 25.0% |
! | ATTAGAGGTGAATTGTTATA+TGG | + | chr7_3:52077761-52077780 | Msa1108800:intron | 25.0% |
! | TTAGAGGTGAATTGTTATAT+GGG | + | chr7_3:52077762-52077781 | Msa1108800:intron | 25.0% |
!!! | TTTTTGAGATTGTGATTGTA+AGG | + | chr7_3:52078015-52078034 | Msa1108800:intron | 25.0% |
! | ACAAAAATCTAAGAAATTGG+AGG | - | chr7_3:52078094-52078113 | None:intergenic | 25.0% |
!! | TCCAATTTCTTAGATTTTTG+TGG | + | chr7_3:52078093-52078112 | Msa1108800:intron | 25.0% |
! | TCCACAAAAATCTAAGAAAT+TGG | - | chr7_3:52078097-52078116 | None:intergenic | 25.0% |
!!! | AAACATCATTAGTTGATGAT+TGG | + | chr7_3:52078210-52078229 | Msa1108800:intron | 25.0% |
!! | AATTATATTGGTTGCAATAG+TGG | - | chr7_3:52078378-52078397 | None:intergenic | 25.0% |
! | ATAATTATTAATACAGCAGG+GGG | + | chr7_3:52078392-52078411 | Msa1108800:intron | 25.0% |
!!! | TTTTAGAAAAAGTAAGGTAC+GGG | + | chr7_3:52078493-52078512 | Msa1108800:intron | 25.0% |
! | AACAAGGATATGATTTCAAA+CGG | - | chr7_3:52078826-52078845 | None:intergenic | 25.0% |
! | ATGAATCAAAATTCAGAACA+CGG | - | chr7_3:52079037-52079056 | None:intergenic | 25.0% |
! | AGAAGTTGGATATCTTATTA+TGG | + | chr7_3:52079353-52079372 | Msa1108800:intron | 25.0% |
! | GAAGTTGGATATCTTATTAT+GGG | + | chr7_3:52079354-52079373 | Msa1108800:intron | 25.0% |
! | ATATCTTATTATGGGTGTTA+GGG | + | chr7_3:52079362-52079381 | Msa1108800:intron | 25.0% |
! | ATGAAAAATAGCTGAAAACT+AGG | + | chr7_3:52079438-52079457 | Msa1108800:intron | 25.0% |
! | TGAAAAATAGCTGAAAACTA+GGG | + | chr7_3:52079439-52079458 | Msa1108800:intron | 25.0% |
! | AAGGAAGAATATGAAAAAGA+AGG | - | chr7_3:52079638-52079657 | Msa1108810:CDS | 25.0% |
!! | TTTACAGTTTTTGCTACAAT+AGG | + | chr7_3:52080249-52080268 | Msa1108800:intron | 25.0% |
! | GCAAAAATGAGAATCTTATA+TGG | - | chr7_3:52080316-52080335 | None:intergenic | 25.0% |
!! | ATTATTATTAAGGTGCTCAT+GGG | + | chr7_3:52080350-52080369 | Msa1108800:intron | 25.0% |
! | AACATTAACATTAGAAGTGA+TGG | - | chr7_3:52080463-52080482 | None:intergenic | 25.0% |
!!! | TGTATTACCTCCATTTTTTT+CGG | - | chr7_3:52080683-52080702 | None:intergenic | 25.0% |
! | TAGTATTCTAATCTTGTCTT+TGG | - | chr7_3:52080962-52080981 | None:intergenic | 25.0% |
TGAAGTTGAGGAAAAAAACA+TGG | + | chr7_3:52077870-52077889 | Msa1108800:exon | 30.0% | |
ATTGTTTCAATTGAGAGAGA+GGG | + | chr7_3:52078054-52078073 | Msa1108800:intron | 30.0% | |
! | TTCTTAGATTTTTGTGGAGT+TGG | + | chr7_3:52078099-52078118 | Msa1108800:intron | 30.0% |
!! | TTGATGATTGGTGTCAAAAA+TGG | + | chr7_3:52078222-52078241 | Msa1108800:intron | 30.0% |
TAATTATTAATACAGCAGGG+GGG | + | chr7_3:52078393-52078412 | Msa1108800:intron | 30.0% | |
AACTAAAACCTATGTTGCAT+AGG | + | chr7_3:52078419-52078438 | Msa1108800:intron | 30.0% | |
!! | CGGCAATTTTAGAAAAAGTA+AGG | + | chr7_3:52078487-52078506 | Msa1108800:intron | 30.0% |
TACAATAATGAGCAGAAATG+AGG | + | chr7_3:52078717-52078736 | Msa1108800:intron | 30.0% | |
TATGATTTCAAACGGCATAT+GGG | - | chr7_3:52078818-52078837 | None:intergenic | 30.0% | |
ATATGATTTCAAACGGCATA+TGG | - | chr7_3:52078819-52078838 | None:intergenic | 30.0% | |
GTTGTTATCTTTGTATAGGT+AGG | - | chr7_3:52078856-52078875 | None:intergenic | 30.0% | |
ATTCAACAGGTTCAAAGTAA+AGG | - | chr7_3:52078881-52078900 | None:intergenic | 30.0% | |
TACACGTATTAACAGAAAGT+GGG | - | chr7_3:52079004-52079023 | None:intergenic | 30.0% | |
ATACACGTATTAACAGAAAG+TGG | - | chr7_3:52079005-52079024 | None:intergenic | 30.0% | |
CTGTTATAGGTATCAATCTT+AGG | + | chr7_3:52079089-52079108 | Msa1108800:intron | 30.0% | |
TAGGTATCAATCTTAGGTAA+TGG | + | chr7_3:52079095-52079114 | Msa1108800:intron | 30.0% | |
! | TCAATCTTAGGTAATGGTAT+TGG | + | chr7_3:52079101-52079120 | Msa1108800:intron | 30.0% |
! | TCAGTTTCTTTAAGCCTTAT+AGG | - | chr7_3:52079260-52079279 | None:intergenic | 30.0% |
TTAGAAATCAGAACACACAT+AGG | + | chr7_3:52079295-52079314 | Msa1108800:intron | 30.0% | |
AAAAGACAACAGAAAGAAGT+TGG | + | chr7_3:52079339-52079358 | Msa1108800:intron | 30.0% | |
GATATCTTATTATGGGTGTT+AGG | + | chr7_3:52079361-52079380 | Msa1108800:intron | 30.0% | |
GAACTTGCAAAATCTGTTAT+GGG | - | chr7_3:52079524-52079543 | None:intergenic | 30.0% | |
CACATGACTGAAAGTTATAT+AGG | - | chr7_3:52079575-52079594 | None:intergenic | 30.0% | |
TTCAAAAGAAGGAATCTGAT+TGG | + | chr7_3:52079730-52079749 | Msa1108800:CDS | 30.0% | |
TCTCAACTCTCTAATATTGA+CGG | - | chr7_3:52079837-52079856 | Msa1108810:CDS | 30.0% | |
GTCTGCTTATTAAGAATCAA+AGG | - | chr7_3:52079905-52079924 | None:intergenic | 30.0% | |
! | GTAAGAGCATAGACAATAAT+AGG | + | chr7_3:52079933-52079952 | Msa1108800:intron | 30.0% |
AGACCAAATTAGAGTAGTTT+AGG | + | chr7_3:52079983-52080002 | Msa1108800:intron | 30.0% | |
! | ATAGGACGTTTTTCTCTTAA+TGG | + | chr7_3:52080098-52080117 | Msa1108800:intron | 30.0% |
AGAATCTTATATGGGATGAA+TGG | - | chr7_3:52080307-52080326 | None:intergenic | 30.0% | |
! | CATTATTATTAAGGTGCTCA+TGG | + | chr7_3:52080349-52080368 | Msa1108800:intron | 30.0% |
AATTCAAAAGCAGGAAAACT+TGG | - | chr7_3:52080376-52080395 | None:intergenic | 30.0% | |
!! | TCCTGCTTTTGAATTATCTA+AGG | + | chr7_3:52080381-52080400 | Msa1108800:intron | 30.0% |
TCCTTAGATAATTCAAAAGC+AGG | - | chr7_3:52080385-52080404 | None:intergenic | 30.0% | |
! | GTTTTTATTGCATTGTCCTT+AGG | + | chr7_3:52080428-52080447 | Msa1108800:intron | 30.0% |
CTAATGTTAATGTTTCATCG+TGG | + | chr7_3:52080469-52080488 | Msa1108800:CDS | 30.0% | |
TATTGACCATGTGAACAAAT+CGG | + | chr7_3:52080588-52080607 | Msa1108800:intron | 30.0% | |
CATAATGAAATGGGATGTAA+TGG | + | chr7_3:52080914-52080933 | Msa1108800:three_prime_UTR | 30.0% | |
!!! | CTCTTTCATTTTTTGCGGAT+AGG | + | chr7_3:52077426-52077445 | Msa1108800:five_prime_UTR | 35.0% |
!! | CTTGATGGATTGTGATGTTA+GGG | - | chr7_3:52077600-52077619 | None:intergenic | 35.0% |
GAGATAATTGCAAACCTTGA+TGG | - | chr7_3:52077615-52077634 | None:intergenic | 35.0% | |
! | TCTTATGCAGTTTGAAGTTG+AGG | + | chr7_3:52077858-52077877 | Msa1108800:intron | 35.0% |
!!! | TGGTGGCAATTTTTTGCATA+GGG | + | chr7_3:52077894-52077913 | Msa1108800:CDS | 35.0% |
CTCTTACTTTGTCAATGAAG+TGG | + | chr7_3:52077921-52077940 | Msa1108800:CDS | 35.0% | |
GTCAATGAAGTGGTTGTTAA+TGG | + | chr7_3:52077931-52077950 | Msa1108800:CDS | 35.0% | |
GATTGTTTCAATTGAGAGAG+AGG | + | chr7_3:52078053-52078072 | Msa1108800:intron | 35.0% | |
AAACCTATGTTGCATAGGTA+CGG | + | chr7_3:52078424-52078443 | Msa1108800:intron | 35.0% | |
TCTTTGTATAGGTAGGAAGT+AGG | - | chr7_3:52078849-52078868 | None:intergenic | 35.0% | |
GGTGGTTGTTATCTTTGTAT+AGG | - | chr7_3:52078860-52078879 | None:intergenic | 35.0% | |
TGATACCTATAACAGTCACA+GGG | - | chr7_3:52079084-52079103 | None:intergenic | 35.0% | |
TTGATACCTATAACAGTCAC+AGG | - | chr7_3:52079085-52079104 | None:intergenic | 35.0% | |
GTGTGTTCTGATTTCTAACT+TGG | - | chr7_3:52079293-52079312 | None:intergenic | 35.0% | |
CAAAATCTGTTATGGGAACA+GGG | - | chr7_3:52079517-52079536 | None:intergenic | 35.0% | |
GGAACTTGCAAAATCTGTTA+TGG | - | chr7_3:52079525-52079544 | None:intergenic | 35.0% | |
! | TATAGGAATGTTTAGGACAG+AGG | - | chr7_3:52079558-52079577 | None:intergenic | 35.0% |
CCTAATATGGGTTCAAATGT+AGG | - | chr7_3:52079685-52079704 | Msa1108810:CDS | 35.0% | |
CCTACATTTGAACCCATATT+AGG | + | chr7_3:52079682-52079701 | Msa1108800:CDS | 35.0% | |
CTTCAAAGCACAACGAAAAT+TGG | - | chr7_3:52079965-52079984 | None:intergenic | 35.0% | |
GAGCCTAAACTACTCTAATT+TGG | - | chr7_3:52079989-52080008 | None:intergenic | 35.0% | |
!! | AGTAGTTTAGGCTCTAAACT+AGG | + | chr7_3:52079995-52080014 | Msa1108800:intron | 35.0% |
GTCCAATAGTTAGAGATAGA+GGG | - | chr7_3:52080149-52080168 | None:intergenic | 35.0% | |
AGTCCAATAGTTAGAGATAG+AGG | - | chr7_3:52080150-52080169 | None:intergenic | 35.0% | |
AAAGACGGTTGATCATATGA+AGG | - | chr7_3:52080175-52080194 | None:intergenic | 35.0% | |
! | AAACTGTAAAGTGCCATCTT+AGG | - | chr7_3:52080239-52080258 | None:intergenic | 35.0% |
AGTGAGGACATCAAAGAATA+TGG | + | chr7_3:52080521-52080540 | Msa1108800:CDS | 35.0% | |
ATTGACCATGTGAACAAATC+GGG | + | chr7_3:52080589-52080608 | Msa1108800:intron | 35.0% | |
!! | GGTTGACTTTTGTGTTATTC+TGG | + | chr7_3:52080610-52080629 | Msa1108800:intron | 35.0% |
AAAGGACCTTCCGAAAAAAA+TGG | + | chr7_3:52080670-52080689 | Msa1108800:CDS | 35.0% | |
!!! | TTACCTCCATTTTTTTCGGA+AGG | - | chr7_3:52080679-52080698 | None:intergenic | 35.0% |
ACAAATGAAAGAATCACTGC+TGG | - | chr7_3:52080795-52080814 | None:intergenic | 35.0% | |
AGCAGTGATTCTTTCATTTG+TGG | + | chr7_3:52080794-52080813 | Msa1108800:exon | 35.0% | |
GGGAAGATTGAAGATGTTTC+TGG | - | chr7_3:52077580-52077599 | None:intergenic | 40.0% | |
!! | CCTTGATGGATTGTGATGTT+AGG | - | chr7_3:52077601-52077620 | None:intergenic | 40.0% |
CCTAACATCACAATCCATCA+AGG | + | chr7_3:52077598-52077617 | Msa1108800:five_prime_UTR | 40.0% | |
GTTGAGGAAAAAAACATGGC+TGG | + | chr7_3:52077874-52077893 | Msa1108800:exon | 40.0% | |
!!! | CTGGTGGCAATTTTTTGCAT+AGG | + | chr7_3:52077893-52077912 | Msa1108800:CDS | 40.0% |
! | TTGTTAATGGTCTTGCCAAC+AGG | + | chr7_3:52077944-52077963 | Msa1108800:CDS | 40.0% |
ACGAGCATGTGAATCTAACT+AGG | - | chr7_3:52078176-52078195 | None:intergenic | 40.0% | |
CATGCTAAGACATTGTCATG+TGG | + | chr7_3:52078320-52078339 | Msa1108800:intron | 40.0% | |
AACCTATGTTGCATAGGTAC+GGG | + | chr7_3:52078425-52078444 | Msa1108800:intron | 40.0% | |
!! | GGTTTTAGTCTCTCAAGCAT+GGG | - | chr7_3:52078797-52078816 | None:intergenic | 40.0% |
ATAGGTAGGAAGTAGGAACA+AGG | - | chr7_3:52078842-52078861 | None:intergenic | 40.0% | |
CAACAGGTTCAAAGTAAAGG+TGG | - | chr7_3:52078878-52078897 | None:intergenic | 40.0% | |
AAGACTTGTGAGAAGTGGTT+GGG | - | chr7_3:52078909-52078928 | None:intergenic | 40.0% | |
TCTTTCCCTGTGACTGTTAT+AGG | + | chr7_3:52079076-52079095 | Msa1108800:intron | 40.0% | |
! | GAACACACATAGGAAAGCAT+AGG | + | chr7_3:52079305-52079324 | Msa1108800:intron | 40.0% |
! | AGCATTGCTCTGTGTCATTA+AGG | - | chr7_3:52079476-52079495 | None:intergenic | 40.0% |
CAGGGTAATAAGTTCTCTCA+AGG | - | chr7_3:52079499-52079518 | None:intergenic | 40.0% | |
GCAAAATCTGTTATGGGAAC+AGG | - | chr7_3:52079518-52079537 | None:intergenic | 40.0% | |
TAGGACAGAGGAATCATTCT+AGG | - | chr7_3:52079546-52079565 | None:intergenic | 40.0% | |
! | GAAAAAGAAGGAGCATGATG+AGG | - | chr7_3:52079626-52079645 | Msa1108810:CDS | 40.0% |
ATGTGTGGAAGGTTTGCATA+AGG | - | chr7_3:52079657-52079676 | Msa1108810:CDS | 40.0% | |
TTTGAACCCATCTACGTTGT+AGG | - | chr7_3:52079716-52079735 | Msa1108810:intron | 40.0% | |
! | ACGTAGATGGGTTCAAAAGA+AGG | + | chr7_3:52079719-52079738 | Msa1108800:CDS | 40.0% |
!! | AAGGAATCTGATTGGTTCTG+TGG | + | chr7_3:52079738-52079757 | Msa1108800:CDS | 40.0% |
! | CAACTAAGCCTTATCCTACT+AGG | + | chr7_3:52080028-52080047 | Msa1108800:intron | 40.0% |
CTATTCCACCTAGTAGGATA+AGG | - | chr7_3:52080039-52080058 | None:intergenic | 40.0% | |
CTTATCCTACTAGGTGGAAT+AGG | + | chr7_3:52080037-52080056 | Msa1108800:intron | 40.0% | |
TAAAGCCTATTCCACCTAGT+AGG | - | chr7_3:52080045-52080064 | None:intergenic | 40.0% | |
ACTAGGTGGAATAGGCTTTA+TGG | + | chr7_3:52080045-52080064 | Msa1108800:intron | 40.0% | |
CTCCCTCTATCTCTAACTAT+TGG | + | chr7_3:52080144-52080163 | Msa1108800:intron | 40.0% | |
CATAGAACCAGATGCAAAGA+CGG | - | chr7_3:52080190-52080209 | None:intergenic | 40.0% | |
!! | GTCTTTGCATCTGGTTCTAT+GGG | + | chr7_3:52080189-52080208 | Msa1108800:intron | 40.0% |
GTGATGGTAATAAGCACCTA+AGG | - | chr7_3:52080447-52080466 | None:intergenic | 40.0% | |
AGAGTTAGCTGAGCAGATAA+AGG | + | chr7_3:52080652-52080671 | Msa1108800:CDS | 40.0% | |
GAGGAAAAAAACATGGCTGG+TGG | + | chr7_3:52077877-52077896 | Msa1108800:exon | 45.0% | |
GCTAAGACATTGTCATGTGG+TGG | + | chr7_3:52078323-52078342 | Msa1108800:intron | 45.0% | |
CATTGTCATGTGGTGGTTTG+TGG | + | chr7_3:52078330-52078349 | Msa1108800:intron | 45.0% | |
TACCCGTACCTATGCAACAT+AGG | - | chr7_3:52078430-52078449 | None:intergenic | 45.0% | |
ATGTTGCATAGGTACGGGTA+TGG | + | chr7_3:52078430-52078449 | Msa1108800:intron | 45.0% | |
TACCGATACGCGTATCTTAC+CGG | - | chr7_3:52078459-52078478 | None:intergenic | 45.0% | |
TAACGATGAAGAACCCGTAC+CGG | - | chr7_3:52078766-52078785 | None:intergenic | 45.0% | |
!! | GGGTTTTAGTCTCTCAAGCA+TGG | - | chr7_3:52078798-52078817 | None:intergenic | 45.0% |
AGACTTGTGAGAAGTGGTTG+GGG | - | chr7_3:52078908-52078927 | None:intergenic | 45.0% | |
CAAGACTTGTGAGAAGTGGT+TGG | - | chr7_3:52078910-52078929 | None:intergenic | 45.0% | |
! | CAGTCATGTGCTGCTCAATT+TGG | + | chr7_3:52079585-52079604 | Msa1108800:intron | 45.0% |
! | AAAGAAGGAGCATGATGAGG+TGG | - | chr7_3:52079623-52079642 | Msa1108810:CDS | 45.0% |
TATGGGTTCAAATGTAGGCC+AGG | - | chr7_3:52079680-52079699 | Msa1108810:CDS | 45.0% | |
TGAACCCATATTAGGACCTC+TGG | + | chr7_3:52079690-52079709 | Msa1108800:CDS | 45.0% | |
TAGGCCAGAGGTCCTAATAT+GGG | - | chr7_3:52079697-52079716 | Msa1108810:intron | 45.0% | |
TGACGGTGCACAAGATAAGA+AGG | - | chr7_3:52079820-52079839 | Msa1108810:CDS | 45.0% | |
! | CTAAGCCTTATCCTACTAGG+TGG | + | chr7_3:52080031-52080050 | Msa1108800:intron | 45.0% |
TGATCAACCGTCTTTGCATC+TGG | + | chr7_3:52080180-52080199 | Msa1108800:intron | 45.0% | |
!! | CGTCTTTGCATCTGGTTCTA+TGG | + | chr7_3:52080188-52080207 | Msa1108800:intron | 45.0% |
AAGTGCCATCTTAGGTGGTT+CGG | - | chr7_3:52080231-52080250 | None:intergenic | 45.0% | |
! | CTGTAAAGTGCCATCTTAGG+TGG | - | chr7_3:52080236-52080255 | None:intergenic | 45.0% |
!! | CTGCAAACCTCTGAAATGCA+GGG | - | chr7_3:52080503-52080522 | None:intergenic | 45.0% |
!! | ACTGCAAACCTCTGAAATGC+AGG | - | chr7_3:52080504-52080523 | None:intergenic | 45.0% |
CATTTCAGAGGTTTGCAGTG+AGG | + | chr7_3:52080505-52080524 | Msa1108800:CDS | 45.0% | |
! | GTCAACCCGATTTGTTCACA+TGG | - | chr7_3:52080597-52080616 | None:intergenic | 45.0% |
GGACCTTCCGAAAAAAATGG+AGG | + | chr7_3:52080673-52080692 | Msa1108800:CDS | 45.0% | |
! | ATTTGTGGCTGCTTTGCTGA+AGG | + | chr7_3:52080809-52080828 | Msa1108800:three_prime_UTR | 45.0% |
! | TTTGTGGCTGCTTTGCTGAA+GGG | + | chr7_3:52080810-52080829 | Msa1108800:three_prime_UTR | 45.0% |
!! | ATAATTAAAAAAAAAAACTA+GGG | - | chr7_3:52077695-52077714 | None:intergenic | 5.0% |
!! | AATAATTAAAAAAAAAAACT+AGG | - | chr7_3:52077696-52077715 | None:intergenic | 5.0% |
!!! | ATTTATTTAATTTTGAATTT+TGG | + | chr7_3:52077833-52077852 | Msa1108800:intron | 5.0% |
TGACACGTGCGAGGGTTATT+GGG | - | chr7_3:52077492-52077511 | None:intergenic | 50.0% | |
GAAAACAGTGACACGTGCGA+GGG | - | chr7_3:52077500-52077519 | None:intergenic | 50.0% | |
AGAAAACAGTGACACGTGCG+AGG | - | chr7_3:52077501-52077520 | None:intergenic | 50.0% | |
GTGGTGCAATGCATAAGCTG+CGG | - | chr7_3:52078359-52078378 | None:intergenic | 50.0% | |
ATAGGTACGGGTATGGTACC+CGG | + | chr7_3:52078437-52078456 | Msa1108800:intron | 50.0% | |
ACCCGGTAAGATACGCGTAT+CGG | + | chr7_3:52078454-52078473 | Msa1108800:intron | 50.0% | |
ACCGATACGCGTATCTTACC+GGG | - | chr7_3:52078458-52078477 | None:intergenic | 50.0% | |
! | CGCGTATCGGTACGAGAATA+CGG | + | chr7_3:52078467-52078486 | Msa1108800:intron | 50.0% |
AACGATGAAGAACCCGTACC+GGG | - | chr7_3:52078765-52078784 | None:intergenic | 50.0% | |
! | TGGTTGGGGGTTGATTCAAC+AGG | - | chr7_3:52078894-52078913 | None:intergenic | 50.0% |
GACTTGTGAGAAGTGGTTGG+GGG | - | chr7_3:52078907-52078926 | None:intergenic | 50.0% | |
GACGCAAGACTTGTGAGAAG+TGG | - | chr7_3:52078914-52078933 | None:intergenic | 50.0% | |
CTTCTCACAAGTCTTGCGTC+TGG | + | chr7_3:52078914-52078933 | Msa1108800:intron | 50.0% | |
TGGGTGAAACACATCAGCAC+GGG | - | chr7_3:52078985-52079004 | None:intergenic | 50.0% | |
GTGGGTGAAACACATCAGCA+CGG | - | chr7_3:52078986-52079005 | None:intergenic | 50.0% | |
TGCAAACCTTCCACACATCC+TGG | + | chr7_3:52079659-52079678 | Msa1108800:CDS | 50.0% | |
CAAATGTAGGCCAGGATGTG+TGG | - | chr7_3:52079672-52079691 | Msa1108810:CDS | 50.0% | |
GTAGGCCAGAGGTCCTAATA+TGG | - | chr7_3:52079698-52079717 | Msa1108810:intron | 50.0% | |
CTCTGGCCTACAACGTAGAT+GGG | + | chr7_3:52079707-52079726 | Msa1108800:CDS | 50.0% | |
CATGTCCGAACCACCTAAGA+TGG | + | chr7_3:52080223-52080242 | Msa1108800:intron | 50.0% | |
ACACGTGCGAGGGTTATTGG+GGG | - | chr7_3:52077490-52077509 | None:intergenic | 55.0% | |
GACACGTGCGAGGGTTATTG+GGG | - | chr7_3:52077491-52077510 | None:intergenic | 55.0% | |
GTGACACGTGCGAGGGTTAT+TGG | - | chr7_3:52077493-52077512 | None:intergenic | 55.0% | |
GTGCAATGCATAAGCTGCGG+CGG | - | chr7_3:52078356-52078375 | None:intergenic | 55.0% | |
! | ACGAGTACCGTACACGTACC+CGG | + | chr7_3:52078744-52078763 | Msa1108800:intron | 55.0% |
TACCGTACACGTACCCGGTA+CGG | + | chr7_3:52078749-52078768 | Msa1108800:intron | 55.0% | |
CTGACGACAAACACGAGGCT+TGG | - | chr7_3:52078940-52078959 | None:intergenic | 55.0% | |
GTCTGCTGACGACAAACACG+AGG | - | chr7_3:52078945-52078964 | None:intergenic | 55.0% | |
GAGCATGATGAGGTGGCAAG+GGG | - | chr7_3:52079616-52079635 | Msa1108810:CDS | 55.0% | |
GGAGCATGATGAGGTGGCAA+GGG | - | chr7_3:52079617-52079636 | Msa1108810:CDS | 55.0% | |
! | AGGAGCATGATGAGGTGGCA+AGG | - | chr7_3:52079618-52079637 | Msa1108810:CDS | 55.0% |
TGTAGGCCAGGATGTGTGGA+AGG | - | chr7_3:52079668-52079687 | Msa1108810:CDS | 55.0% | |
CCATCTACGTTGTAGGCCAG+AGG | - | chr7_3:52079709-52079728 | Msa1108810:intron | 55.0% | |
CCTCTGGCCTACAACGTAGA+TGG | + | chr7_3:52079706-52079725 | Msa1108800:CDS | 55.0% | |
AGCAGACTGCAGAGGCAGAA+GGG | + | chr7_3:52079763-52079782 | Msa1108800:CDS | 55.0% | |
! | AGGCAGAAGGGCATGGCAAT+TGG | + | chr7_3:52079775-52079794 | Msa1108800:CDS | 55.0% |
TTCGCAGCCCTGCATTTCAG+AGG | + | chr7_3:52080493-52080512 | Msa1108800:CDS | 55.0% | |
GGGTACGTGTACGGTACTCG+TGG | - | chr7_3:52078745-52078764 | None:intergenic | 60.0% | |
ACCGTACACGTACCCGGTAC+GGG | + | chr7_3:52078750-52078769 | Msa1108800:intron | 60.0% | |
ACCCGTACCGGGTACGTGTA+CGG | - | chr7_3:52078754-52078773 | None:intergenic | 60.0% | |
CTTCTGCCTCTGCAGTCTGC+TGG | - | chr7_3:52079764-52079783 | Msa1108810:intron | 60.0% | |
CAGCAGACTGCAGAGGCAGA+AGG | + | chr7_3:52079762-52079781 | Msa1108800:CDS | 60.0% | |
ACTGCAGAGGCAGAAGGGCA+TGG | + | chr7_3:52079768-52079787 | Msa1108800:CDS | 60.0% | |
GTCGTCAGCAGACCCTCCAC+TGG | + | chr7_3:52078952-52078971 | Msa1108800:intron | 65.0% | |
TCAGCAGACCCTCCACTGGC+TGG | + | chr7_3:52078956-52078975 | Msa1108800:intron | 65.0% | |
! | ACGGGTTGCCAGCCAGTGGA+GGG | - | chr7_3:52078967-52078986 | None:intergenic | 65.0% |
CTGTGGCCAGCAGACTGCAG+AGG | + | chr7_3:52079755-52079774 | Msa1108800:CDS | 65.0% | |
! | CACGGGTTGCCAGCCAGTGG+AGG | - | chr7_3:52078968-52078987 | None:intergenic | 70.0% |
! | CAGCACGGGTTGCCAGCCAG+TGG | - | chr7_3:52078971-52078990 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 52077422 | 52081110 | 52077422 | ID=Msa1108800;Name=Msa1108800 |
chr7_3 | mRNA | 52077422 | 52081110 | 52077422 | ID=Msa1108800-mRNA-1;Parent=Msa1108800;Name=Msa1108800-mRNA-1;_AED=0.17;_eAED=0.17;_QI=219|0.6|0.66|0.83|0.2|0.5|6|309|169 |
chr7_3 | exon | 52077422 | 52077619 | 52077422 | ID=Msa1108800-mRNA-1:exon:10777;Parent=Msa1108800-mRNA-1 |
chr7_3 | exon | 52077868 | 52077965 | 52077868 | ID=Msa1108800-mRNA-1:exon:10778;Parent=Msa1108800-mRNA-1 |
chr7_3 | exon | 52079588 | 52079828 | 52079588 | ID=Msa1108800-mRNA-1:exon:10779;Parent=Msa1108800-mRNA-1 |
chr7_3 | exon | 52080450 | 52080561 | 52080450 | ID=Msa1108800-mRNA-1:exon:10780;Parent=Msa1108800-mRNA-1 |
chr7_3 | exon | 52080636 | 52080694 | 52080636 | ID=Msa1108800-mRNA-1:exon:10781;Parent=Msa1108800-mRNA-1 |
chr7_3 | exon | 52080781 | 52081110 | 52080781 | ID=Msa1108800-mRNA-1:exon:10782;Parent=Msa1108800-mRNA-1 |
chr7_3 | five_prime_UTR | 52077422 | 52077619 | 52077422 | ID=Msa1108800-mRNA-1:five_prime_utr;Parent=Msa1108800-mRNA-1 |
chr7_3 | five_prime_UTR | 52077868 | 52077888 | 52077868 | ID=Msa1108800-mRNA-1:five_prime_utr;Parent=Msa1108800-mRNA-1 |
chr7_3 | CDS | 52077889 | 52077965 | 52077889 | ID=Msa1108800-mRNA-1:cds;Parent=Msa1108800-mRNA-1 |
chr7_3 | CDS | 52079588 | 52079828 | 52079588 | ID=Msa1108800-mRNA-1:cds;Parent=Msa1108800-mRNA-1 |
chr7_3 | CDS | 52080450 | 52080561 | 52080450 | ID=Msa1108800-mRNA-1:cds;Parent=Msa1108800-mRNA-1 |
chr7_3 | CDS | 52080636 | 52080694 | 52080636 | ID=Msa1108800-mRNA-1:cds;Parent=Msa1108800-mRNA-1 |
chr7_3 | CDS | 52080781 | 52080801 | 52080781 | ID=Msa1108800-mRNA-1:cds;Parent=Msa1108800-mRNA-1 |
chr7_3 | three_prime_UTR | 52080802 | 52081110 | 52080802 | ID=Msa1108800-mRNA-1:three_prime_utr;Parent=Msa1108800-mRNA-1 |
Gene Sequence |
Protein sequence |