AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0055100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055100 MtrunA17_Chr1g0149521 97.977 346 4 1 1 343 1 346 0.0 692
Msa0055100 MtrunA17_Chr3g0126221 47.352 321 166 3 24 341 20 340 6.15e-112 329
Msa0055100 MtrunA17_Chr5g0396961 45.697 337 176 3 12 341 4 340 1.66e-107 318
Msa0055100 MtrunA17_Chr3g0115251 38.298 329 180 5 27 333 16 343 6.51e-73 231
Msa0055100 MtrunA17_Chr4g0024631 43.130 262 138 5 82 333 96 356 1.92e-67 217
Msa0055100 MtrunA17_Chr2g0322591 44.867 263 134 5 81 333 91 352 1.27e-64 209
Msa0055100 MtrunA17_Chr4g0004991 43.777 233 127 4 104 333 12 243 7.49e-64 204
Msa0055100 MtrunA17_Chr4g0017871 43.367 196 108 3 140 333 4 198 3.93e-55 180
Msa0055100 MtrunA17_Chr8g0360581 31.579 266 167 8 79 339 49 304 5.89e-37 135
Msa0055100 MtrunA17_Chr2g0316241 35.043 234 137 8 110 335 71 297 3.15e-35 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055100 AT4G32120.1 76.879 346 76 2 1 343 1 345 0.0 556
Msa0055100 AT2G25300.1 73.487 347 87 2 1 343 1 346 0.0 536
Msa0055100 AT2G25300.2 77.695 269 59 1 75 343 1 268 4.28e-161 451
Msa0055100 AT5G53340.1 42.985 335 188 3 10 341 2 336 1.19e-99 298
Msa0055100 AT5G53340.2 42.985 335 187 4 10 341 2 335 1.28e-97 293
Msa0055100 AT1G05170.1 38.824 340 174 7 25 333 20 356 8.50e-75 235
Msa0055100 AT1G05170.2 38.395 349 181 7 16 333 11 356 9.96e-74 234
Msa0055100 AT1G32930.1 47.511 221 113 3 115 333 129 348 9.55e-70 223
Msa0055100 AT1G77810.2 46.396 222 116 3 114 333 113 333 9.50e-69 220
Msa0055100 AT1G77810.1 46.396 222 116 3 114 333 116 336 1.39e-68 220
Msa0055100 AT2G32430.1 38.857 350 179 8 16 333 12 358 1.28e-67 218
Msa0055100 AT1G33430.1 42.308 260 143 4 80 333 84 342 2.53e-65 212
Msa0055100 AT1G11730.1 42.578 256 142 5 82 333 79 333 4.49e-65 211
Msa0055100 AT1G33430.2 41.045 268 143 5 80 333 84 350 2.59e-62 204
Msa0055100 AT4G26940.1 39.104 335 173 11 26 333 27 357 3.39e-62 204
Msa0055100 AT1G22015.1 42.478 226 127 3 110 333 120 344 2.25e-57 191
Msa0055100 AT1G33430.3 43.172 227 122 4 78 298 82 307 1.56e-54 181
Msa0055100 AT1G53290.1 33.198 247 148 8 98 339 73 307 8.23e-36 133
Msa0055100 AT2G26100.1 36.404 228 134 7 114 335 108 330 1.36e-35 133
Msa0055100 AT2G26100.2 36.404 228 134 7 114 335 108 330 1.84e-35 132
Msa0055100 AT3G14960.1 33.333 228 141 7 114 335 82 304 5.61e-35 130
Msa0055100 AT4G26940.2 36.641 262 136 10 26 261 27 284 4.97e-33 125

Find 97 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAAAAGACAAATCTTATT+AGG 0.127027 1_2:+9936326 None:intergenic
TGTTATACTTTCGAAGAATT+TGG 0.175766 1_2:-9937911 Msa0055100:CDS
CGTAGGCTTCTTGCTGTTAT+TGG 0.197350 1_2:-9942645 Msa0055100:CDS
GAACCTGATTGGTGGAAATT+TGG 0.211524 1_2:-9939768 Msa0055100:CDS
GGACTAAAATAAGAAAATTT+AGG 0.237121 1_2:+9936348 None:intergenic
TTTGCAGGAAGGAGGTAAAA+TGG 0.289393 1_2:+9944223 None:intergenic
TACAGTGGAAGATAAGTTAA+TGG 0.310767 1_2:-9943256 Msa0055100:CDS
AACCTGATTGGTGGAAATTT+GGG 0.317577 1_2:-9939767 Msa0055100:CDS
GGCCAGGATGGCGCATATAT+TGG 0.322926 1_2:-9940417 Msa0055100:CDS
AGATCATTGTAGGTATAAAA+AGG 0.329527 1_2:+9936588 None:intergenic
ATTGGAGTATATACTGGATT+TGG 0.331812 1_2:-9942627 Msa0055100:CDS
CACAGTACATTAACATAAAC+AGG 0.339769 1_2:-9937888 Msa0055100:intron
ATAAAAGACAAATCTTATTA+GGG 0.348428 1_2:+9936327 None:intergenic
TTAGTACGGCGGTTCAGAAC+TGG 0.349681 1_2:-9940624 Msa0055100:CDS
GCTGTTATTGGAGTATATAC+TGG 0.356789 1_2:-9942633 Msa0055100:CDS
TCCCCAAATTTCCACCAATC+AGG 0.366321 1_2:+9939765 None:intergenic
TTTGCTGCCGTTGTCCTTTG+AGG 0.377114 1_2:+9942682 None:intergenic
GGTATGCTCGTTGGCTTGAT+TGG 0.377919 1_2:-9936734 Msa0055100:exon
CTTTCTTCTCTTGCGTCGCT+TGG 0.381177 1_2:-9943959 Msa0055100:CDS
TTTGAGGTACCCTTGGCTCT+TGG 0.386477 1_2:+9942698 None:intergenic
AAGAATGAACAGATCATTGT+AGG 0.399103 1_2:+9936578 None:intergenic
GGATTTGCATAAATATCAAT+TGG 0.403058 1_2:-9944099 Msa0055100:five_prime_UTR
CAAAGCTCTCAATGTTGTAT+TGG 0.404506 1_2:+9936629 None:intergenic
GAGGATTGTGGAAGCTGAGA+TGG 0.418121 1_2:-9942733 Msa0055100:CDS
AGGTATTTCCGACATGCATC+TGG 0.427162 1_2:-9937940 Msa0055100:CDS
CGCTTCGAAGTCGATGTTGT+TGG 0.433801 1_2:+9944032 None:intergenic
TGTGTTGTTTATCAGGGATC+TGG 0.435095 1_2:-9942760 Msa0055100:intron
TGGAAGTGCTATATGATCAT+AGG 0.436840 1_2:-9936538 Msa0055100:three_prime_UTR
TCTTGACCGTCGACGTGGCC+AGG 0.439723 1_2:-9940433 Msa0055100:CDS
CTTGGCTTTACGTCGCCGGC+AGG 0.443966 1_2:-9943941 Msa0055100:intron
AAAGGACAACGGCAGCAAAC+TGG 0.445483 1_2:-9942678 Msa0055100:CDS
GCCTATGATGATACAACATT+GGG 0.446536 1_2:-9937221 Msa0055100:CDS
GTCGCTTGGCTTTACGTCGC+CGG 0.447313 1_2:-9943945 Msa0055100:CDS
TCCCAATGTTGTATCATCAT+AGG 0.460275 1_2:+9937220 None:intergenic
GTTGTCCTTTGAGGTACCCT+TGG 0.464046 1_2:+9942691 None:intergenic
ATGATACAACATTGGGATCA+TGG 0.480900 1_2:-9937214 Msa0055100:CDS
AATCAATCAATCTCAGAGAA+TGG 0.481041 1_2:-9944063 Msa0055100:exon
CTCAAAAGAAATGTATTCAG+AGG 0.485779 1_2:-9942597 Msa0055100:CDS
AACATTGGGATCATGGATGA+TGG 0.485812 1_2:-9937207 Msa0055100:CDS
TCTTCCACTGTAAGAACCTT+AGG 0.488984 1_2:+9943267 None:intergenic
TAGTACGGCGGTTCAGAACT+GGG 0.489724 1_2:-9940623 Msa0055100:CDS
GAAGATAAGTTAATGGTACT+AGG 0.493625 1_2:-9943249 Msa0055100:CDS
TGTCGTCTATATATGTTGAT+TGG 0.496050 1_2:+9937180 None:intergenic
AAGAAAGCTAAGAGGAGAGA+AGG 0.498995 1_2:+9943975 None:intergenic
TCCAAGCTATCACCTCGATT+AGG 0.500386 1_2:+9941176 None:intergenic
GTTTGTAGTAGCACTGTAGC+AGG 0.504873 1_2:-9944142 Msa0055100:five_prime_UTR
TTCAGATAAGGTATGCTCGT+TGG 0.505587 1_2:-9936743 Msa0055100:intron
TATATTGGATGCATGAAGTC+AGG 0.508194 1_2:-9940402 Msa0055100:CDS
GAAGTCAGGAGACGTGATAT+CGG 0.509651 1_2:-9940388 Msa0055100:CDS
TCCTAATCGAGGTGATAGCT+TGG 0.510536 1_2:-9941177 Msa0055100:CDS
ATCCAATATATGCGCCATCC+TGG 0.510550 1_2:+9940415 None:intergenic
GAAATGTATTCAGAGGGTCT+TGG 0.520604 1_2:-9942590 Msa0055100:CDS
CGCAAGAGAAGAAAGCTAAG+AGG 0.524066 1_2:+9943967 None:intergenic
TATGGCAAGATGCAGAGAAT+CGG 0.528498 1_2:-9943797 Msa0055100:CDS
TGCCTATGATGATACAACAT+TGG 0.539252 1_2:-9937222 Msa0055100:CDS
AGTTAATGGTACTAGGGTGC+AGG 0.541667 1_2:-9943242 Msa0055100:intron
AGCTTTGGTATGAACCTGAT+TGG 0.546372 1_2:-9939779 Msa0055100:CDS
GACCGTCGACGTGGCCAGGA+TGG 0.547999 1_2:-9940429 Msa0055100:CDS
ACATGTTTCACTACTTGTCT+CGG 0.550864 1_2:-9936699 Msa0055100:three_prime_UTR
GACAGTATTGACATTGATCT+CGG 0.552540 1_2:-9940574 Msa0055100:intron
CTTGGATCGCAATATTAATG+AGG 0.558938 1_2:-9941159 Msa0055100:CDS
GGATCTGGAGAGGAGGATTG+TGG 0.564661 1_2:-9942745 Msa0055100:CDS
TTGTCGTTGGCCAAGAGCCA+AGG 0.565453 1_2:-9942708 Msa0055100:CDS
CGCCATCCTGGCCACGTCGA+CGG 0.574272 1_2:+9940427 None:intergenic
TGTTGTATCATCATAGGCAT+AGG 0.581817 1_2:+9937226 None:intergenic
AAGATAAGTTAATGGTACTA+GGG 0.581844 1_2:-9943248 Msa0055100:CDS
AAACTGGTTCTTCTGACCGT+AGG 0.585093 1_2:-9942662 Msa0055100:CDS
TGCTGCAGTAGCATCAGTAA+AGG 0.586809 1_2:-9937149 Msa0055100:intron
ACATTGGGATCATGGATGAT+GGG 0.589197 1_2:-9937206 Msa0055100:CDS
TTGATGATCAAATGTTGAAG+AGG 0.594852 1_2:-9936479 Msa0055100:three_prime_UTR
AGTAGCACTGTAGCAGGCGG+CGG 0.597555 1_2:-9944136 Msa0055100:five_prime_UTR
TCAAAAGAAATGTATTCAGA+GGG 0.598744 1_2:-9942596 Msa0055100:CDS
CAACATATATAGACGACAGT+CGG 0.602712 1_2:-9937175 Msa0055100:CDS
AAGAGCCAAGGGTACCTCAA+AGG 0.604992 1_2:-9942696 Msa0055100:CDS
AGCTGAGATGGAATTGTCGT+TGG 0.610971 1_2:-9942721 Msa0055100:CDS
CGTACAAGATAGAGAGACAG+AGG 0.618095 1_2:+9944169 None:intergenic
AATATAATTTGCTGTCTGGG+TGG 0.623380 1_2:+9936402 None:intergenic
TAAAACAATAATAACAGAGG+AGG 0.624271 1_2:+9936515 None:intergenic
TGTCGTTGGCCAAGAGCCAA+GGG 0.624416 1_2:-9942707 Msa0055100:CDS
CAATAACAGCAAGAAGCCTA+CGG 0.624587 1_2:+9942646 None:intergenic
GTTATTGACAGTCCTAATCG+AGG 0.631555 1_2:-9941188 Msa0055100:intron
TTATCAGGGATCTGGAGAGG+AGG 0.631945 1_2:-9942752 Msa0055100:intron
TTTGGTATGAACCTGATTGG+TGG 0.633541 1_2:-9939776 Msa0055100:CDS
GCTCTTCTTGACCGTCGACG+TGG 0.635544 1_2:-9940438 Msa0055100:CDS
TGTTTATCAGGGATCTGGAG+AGG 0.646638 1_2:-9942755 Msa0055100:intron
ACCTGATTGGTGGAAATTTG+GGG 0.648422 1_2:-9939766 Msa0055100:CDS
GTGTAAAACAATAATAACAG+AGG 0.653761 1_2:+9936512 None:intergenic
CAAGCGAACCAGATGCATGT+CGG 0.657962 1_2:+9937932 None:intergenic
ACATCGACTTCGAAGCGAGG+AGG 0.661162 1_2:-9944026 Msa0055100:CDS
GAGGCCTAAGGTTCTTACAG+TGG 0.665617 1_2:-9943271 Msa0055100:CDS
ACAACATCGACTTCGAAGCG+AGG 0.666683 1_2:-9944029 Msa0055100:CDS
AGAGGGTCTTGGATGCCTAG+AGG 0.683490 1_2:-9942579 Msa0055100:intron
TGTAGTAGCACTGTAGCAGG+CGG 0.687915 1_2:-9944139 Msa0055100:five_prime_UTR
GAGACAAGTAGTGAAACATG+TGG 0.694102 1_2:+9936701 None:intergenic
AAGGGTACCTCAAAGGACAA+CGG 0.709836 1_2:-9942689 Msa0055100:CDS
GCGGCGGTAACAGAGAGTTG+AGG 0.722763 1_2:-9944120 Msa0055100:five_prime_UTR
TTCGTAATAGGAAAGTCACG+AGG 0.738840 1_2:-9940686 Msa0055100:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTATTTTTTTTT+TGG - chr1_2:9942546-9942565 Msa0055100:intron 0.0%
!!! ATTTTATTTATTTATTTTGC+AGG + chr1_2:9936341-9936360 None:intergenic 10.0%
!!! TTTATATATGTTTTTAGATT+CGG - chr1_2:9937359-9937378 Msa0055100:intron 10.0%
!! TTATACTATTAGAAAAAATT+TGG - chr1_2:9938339-9938358 Msa0055100:intron 10.0%
!!! TTATTATTTTGTTCATATTT+AGG - chr1_2:9938546-9938565 Msa0055100:intron 10.0%
!!! TTTTTTTTAAAAAAGAGTAT+TGG - chr1_2:9938633-9938652 Msa0055100:intron 10.0%
!!! TTTTCAAAAAAAAAAAGTAT+TGG - chr1_2:9938841-9938860 Msa0055100:intron 10.0%
!!! ATATATTATATATGCTTTTT+TGG - chr1_2:9938888-9938907 Msa0055100:intron 10.0%
!!! TTTCAATTTAAGATATATTA+AGG + chr1_2:9940897-9940916 None:intergenic 10.0%
!! TATTAAATATTCAATAATTC+AGG + chr1_2:9941960-9941979 None:intergenic 10.0%
!!! TATTTATTTTTTTTTTGGAA+TGG - chr1_2:9942551-9942570 Msa0055100:intron 10.0%
!! AAAAATATAATATGATAGAT+TGG + chr1_2:9943634-9943653 None:intergenic 10.0%
!! AAAATAAATCACAATATCAT+AGG + chr1_2:9937246-9937265 None:intergenic 15.0%
!!! AATTATTCGTTCTTATTTAT+TGG + chr1_2:9937640-9937659 None:intergenic 15.0%
!! TCTTAATTGGAATTTAAATT+TGG - chr1_2:9938248-9938267 Msa0055100:intron 15.0%
!! CTTAATTGGAATTTAAATTT+GGG - chr1_2:9938249-9938268 Msa0055100:intron 15.0%
!!! GTTTTTAATTTATACTTTGA+TGG - chr1_2:9938391-9938410 Msa0055100:intron 15.0%
!! AAATATTAAAACTTATCCTA+GGG + chr1_2:9938459-9938478 None:intergenic 15.0%
!! AAAATATTAAAACTTATCCT+AGG + chr1_2:9938460-9938479 None:intergenic 15.0%
!!! ACTGAATTGTTTTTTAAATT+TGG - chr1_2:9939514-9939533 Msa0055100:intron 15.0%
!! TTCTTAAATATTTCAATCTT+AGG - chr1_2:9939640-9939659 Msa0055100:intron 15.0%
!! TCTTAAATATTTCAATCTTA+GGG - chr1_2:9939641-9939660 Msa0055100:intron 15.0%
!!! TTATTTGTTTTTGTTTATTC+AGG - chr1_2:9940853-9940872 Msa0055100:intron 15.0%
!! TAAGTACTAATAACAAAAAT+TGG - chr1_2:9941003-9941022 Msa0055100:intron 15.0%
!!! TATAAATTTTTATCAGAATG+TGG - chr1_2:9941498-9941517 Msa0055100:intron 15.0%
!!! ATAAATTTTTATCAGAATGT+GGG - chr1_2:9941499-9941518 Msa0055100:intron 15.0%
!! ATAAAAATACTTATGTACAA+AGG + chr1_2:9942119-9942138 None:intergenic 15.0%
!! TCTAAATATATACAATACTT+TGG + chr1_2:9942285-9942304 None:intergenic 15.0%
!! CATATTCATATATAAGTTAA+GGG + chr1_2:9942336-9942355 None:intergenic 15.0%
!! ACATATTCATATATAAGTTA+AGG + chr1_2:9942337-9942356 None:intergenic 15.0%
!!! TGTTCTTTTAATATATAGAT+CGG - chr1_2:9942362-9942381 Msa0055100:intron 15.0%
!! ATACTACTAAAAAAGTAAAA+AGG + chr1_2:9942478-9942497 None:intergenic 15.0%
!!! TTTTTACTTTTTTAGTAGTA+TGG - chr1_2:9942477-9942496 Msa0055100:intron 15.0%
!!! ATTTTTAATAGCATGTTTTA+TGG + chr1_2:9942970-9942989 None:intergenic 15.0%
!! ATAAAAGACAAATCTTATTA+GGG + chr1_2:9944222-9944241 None:intergenic 15.0%
!!! TATTTATTTATTTTGCAGGA+AGG + chr1_2:9936337-9936356 None:intergenic 20.0%
!!! ATTTTGATCAAAAATGTGTT+AGG - chr1_2:9936725-9936744 Msa0055100:exon 20.0%
!! AAATTAGAACTGAAAAGAAA+AGG + chr1_2:9936827-9936846 None:intergenic 20.0%
!!! TTGAAATTTGTGTTGTTTTT+AGG - chr1_2:9937190-9937209 Msa0055100:CDS 20.0%
!! TGCAAATACAACAATTAAAA+AGG - chr1_2:9937662-9937681 Msa0055100:intron 20.0%
!!! TTTTATGATGTTGTTTTGTA+AGG - chr1_2:9937753-9937772 Msa0055100:intron 20.0%
!!! TTTATGATGTTGTTTTGTAA+GGG - chr1_2:9937754-9937773 Msa0055100:intron 20.0%
!!! CATTTATACTTTGATTTTGA+TGG - chr1_2:9938315-9938334 Msa0055100:intron 20.0%
!! AAAACTAGAAATCATGAAAA+TGG + chr1_2:9938424-9938443 None:intergenic 20.0%
!!! TTACTTTTTCATAATAGTAC+TGG - chr1_2:9938597-9938616 Msa0055100:intron 20.0%
!!! TAATTGAGTTGTTCATATTT+AGG - chr1_2:9938757-9938776 Msa0055100:intron 20.0%
!! TTTGTTGAGTATTATTTGTA+TGG - chr1_2:9939112-9939131 Msa0055100:intron 20.0%
!! ATTTGTATGGTTATCTTTAT+AGG - chr1_2:9939125-9939144 Msa0055100:intron 20.0%
!! ACTGTCAATAACAAATTTAA+AGG + chr1_2:9939350-9939369 None:intergenic 20.0%
!! ATCATAGATGCTTAAAATTT+AGG - chr1_2:9939540-9939559 Msa0055100:intron 20.0%
!! TCATAGATGCTTAAAATTTA+GGG - chr1_2:9939541-9939560 Msa0055100:intron 20.0%
!!! ATAATGCAAGTTTTAAATGA+GGG + chr1_2:9939620-9939639 None:intergenic 20.0%
!!! AATAATGCAAGTTTTAAATG+AGG + chr1_2:9939621-9939640 None:intergenic 20.0%
!!! TGGTTAAATTATTCTTTTTC+CGG - chr1_2:9939685-9939704 Msa0055100:intron 20.0%
!! AAAAACATTGATAAACACAA+TGG + chr1_2:9939755-9939774 None:intergenic 20.0%
!!! AAGAAGATTTTTGCTTTTTT+AGG + chr1_2:9939903-9939922 None:intergenic 20.0%
!! TATTTATGATAAAAGATGTG+TGG - chr1_2:9940219-9940238 Msa0055100:intron 20.0%
!! AATAATTCTGAACACAAAAA+TGG + chr1_2:9940359-9940378 None:intergenic 20.0%
!! GAATGTGTTAATTATCTTTA+GGG - chr1_2:9940462-9940481 Msa0055100:intron 20.0%
!! AGAAATATAAGTGTAATTCA+GGG + chr1_2:9940616-9940635 None:intergenic 20.0%
!! AAGAAATATAAGTGTAATTC+AGG + chr1_2:9940617-9940636 None:intergenic 20.0%
!!! GATTTTTCAATTGAGATTTT+TGG - chr1_2:9940706-9940725 Msa0055100:intron 20.0%
!! AACAACAAAGAATAATGTAT+TGG + chr1_2:9940920-9940939 None:intergenic 20.0%
!!! TGTTTTATCATTGAATTGAA+TGG - chr1_2:9940936-9940955 Msa0055100:intron 20.0%
!!! GTTTTATCATTGAATTGAAT+GGG - chr1_2:9940937-9940956 Msa0055100:intron 20.0%
!! ATGGGTAAATTAATAATCTT+TGG - chr1_2:9940955-9940974 Msa0055100:intron 20.0%
!! TACTAATAACAAAAATTGGA+GGG - chr1_2:9941007-9941026 Msa0055100:intron 20.0%
!! GCGTTTAAACAATATAAATT+TGG + chr1_2:9941095-9941114 None:intergenic 20.0%
!! CAATATGATTGAAACAATTT+AGG + chr1_2:9941134-9941153 None:intergenic 20.0%
!! TAAATATTCAATAATTCAGG+TGG + chr1_2:9941957-9941976 None:intergenic 20.0%
!! AAAAGATTAACAAGTTATCA+TGG + chr1_2:9942018-9942037 None:intergenic 20.0%
!! AAAAATAAAACAACTCAGTA+TGG + chr1_2:9942514-9942533 None:intergenic 20.0%
!!! TTTATTGCTTTATTGTCTTT+AGG - chr1_2:9942586-9942605 Msa0055100:CDS 20.0%
!! ACGTCATGTATAATATTAAA+AGG + chr1_2:9943118-9943137 None:intergenic 20.0%
!! TGGAAAATGAAAATGTATTT+GGG - chr1_2:9943471-9943490 Msa0055100:intron 20.0%
!!! AAAAATATAATTTGCTGTCT+GGG + chr1_2:9944150-9944169 None:intergenic 20.0%
!! GGACTAAAATAAGAAAATTT+AGG + chr1_2:9944201-9944220 None:intergenic 20.0%
!! GATAAAAGACAAATCTTATT+AGG + chr1_2:9944223-9944242 None:intergenic 20.0%
! GGATTTGCATAAATATCAAT+TGG - chr1_2:9936447-9936466 Msa0055100:three_prime_UTR 25.0%
! GAATTGAAATGAATGAGAAT+CGG + chr1_2:9936645-9936664 None:intergenic 25.0%
! ATCAAAAATGTGTTAGGTTA+TGG - chr1_2:9936731-9936750 Msa0055100:exon 25.0%
!!! ATTGAATTCTGAAATCCATA+TGG - chr1_2:9936893-9936912 Msa0055100:intron 25.0%
!!! GATTTATTTTTTGTTTCCAG+AGG - chr1_2:9937256-9937275 Msa0055100:intron 25.0%
! AAGATAAGTTAATGGTACTA+GGG - chr1_2:9937298-9937317 Msa0055100:intron 25.0%
!! ATTCGTTCTTATTTATTGGT+TGG + chr1_2:9937636-9937655 None:intergenic 25.0%
! TCAAAAGAAATGTATTCAGA+GGG - chr1_2:9937950-9937969 Msa0055100:intron 25.0%
! TCTACTGATATCAATTATGT+TGG - chr1_2:9938168-9938187 Msa0055100:intron 25.0%
!!! TTTTTTGTGATTCTCTAAGA+AGG - chr1_2:9938729-9938748 Msa0055100:intron 25.0%
!! ATGTCAATTTGAAGTTAACA+TGG + chr1_2:9939051-9939070 None:intergenic 25.0%
!!! TCTTTCTTCAAGTTTTTTCA+AGG + chr1_2:9939200-9939219 None:intergenic 25.0%
! TTGAAAAAACTTGAAGAAAG+AGG - chr1_2:9939199-9939218 Msa0055100:intron 25.0%
! TATTAATATCATAGCCAGTA+TGG + chr1_2:9939273-9939292 None:intergenic 25.0%
!!! TAATGCAAGTTTTAAATGAG+GGG + chr1_2:9939619-9939638 None:intergenic 25.0%
!! TTAAATTATTCTTTTTCCGG+TGG - chr1_2:9939688-9939707 Msa0055100:intron 25.0%
! AGCAAAAATCTTCTTTAGTA+CGG - chr1_2:9939908-9939927 Msa0055100:intron 25.0%
! AATACTGAATGCATGTATTT+AGG - chr1_2:9940007-9940026 Msa0055100:intron 25.0%
! GGGATGAAAATTAAGATAAT+CGG + chr1_2:9940439-9940458 None:intergenic 25.0%
! AGATAATTAACACATTCGAT+GGG + chr1_2:9940459-9940478 None:intergenic 25.0%
! AAGATAATTAACACATTCGA+TGG + chr1_2:9940460-9940479 None:intergenic 25.0%
! CGAATGTGTTAATTATCTTT+AGG - chr1_2:9940461-9940480 Msa0055100:intron 25.0%
!! CAAATCTTTTCTCATCTAAA+GGG + chr1_2:9940828-9940847 None:intergenic 25.0%
! AGATATATTAAGGCATAATC+AGG + chr1_2:9940887-9940906 None:intergenic 25.0%
! GTACTAATAACAAAAATTGG+AGG - chr1_2:9941006-9941025 Msa0055100:intron 25.0%
! AAGCAATGGATGTTATAAAT+AGG + chr1_2:9941425-9941444 None:intergenic 25.0%
! TAACAAGTTATCATGGAAAA+TGG + chr1_2:9942011-9942030 None:intergenic 25.0%
!! ATGTACAAAGGATAACTTTT+TGG + chr1_2:9942107-9942126 None:intergenic 25.0%
!! AATATATAGATCGGTTGATA+CGG - chr1_2:9942371-9942390 Msa0055100:intron 25.0%
! TATGGTATTATAACTCCTAA+TGG - chr1_2:9942394-9942413 Msa0055100:intron 25.0%
! GTCTCTATGTATAAATATTG+TGG - chr1_2:9942446-9942465 Msa0055100:intron 25.0%
! CTATGTATAAATATTGTGGA+TGG - chr1_2:9942450-9942469 Msa0055100:intron 25.0%
!!! TTTTTTAGTAGTATGGAGTA+TGG - chr1_2:9942484-9942503 Msa0055100:intron 25.0%
! TGTTATACTTTCGAAGAATT+TGG - chr1_2:9942635-9942654 Msa0055100:CDS 25.0%
!!! GATACACTACATTTTGTTTT+TGG + chr1_2:9943292-9943311 None:intergenic 25.0%
! GTGGAAAATGAAAATGTATT+TGG - chr1_2:9943470-9943489 Msa0055100:intron 25.0%
!! AGTTATCAATTTTACACTGA+CGG + chr1_2:9943609-9943628 None:intergenic 25.0%
!! AAGTTCAATTTTGTGAACTT+AGG + chr1_2:9943761-9943780 None:intergenic 25.0%
! GGTATAAAAAGGAATTCTAT+TGG + chr1_2:9943950-9943969 None:intergenic 25.0%
! AGATCATTGTAGGTATAAAA+AGG + chr1_2:9943961-9943980 None:intergenic 25.0%
!! CTTTTAGATACACTACATTA+TGG - chr1_2:9943988-9944007 Msa0055100:CDS 25.0%
! TAAAACAATAATAACAGAGG+AGG + chr1_2:9944034-9944053 None:intergenic 25.0%
! GTGTAAAACAATAATAACAG+AGG + chr1_2:9944037-9944056 None:intergenic 25.0%
! AAGAGGAAAAAATTCAAAGA+AGG - chr1_2:9944084-9944103 Msa0055100:five_prime_UTR 25.0%
!! AAAAAATTCAAAGAAGGCAT+AGG - chr1_2:9944090-9944109 Msa0055100:five_prime_UTR 25.0%
!!! GAAAAATATAATTTGCTGTC+TGG + chr1_2:9944151-9944170 None:intergenic 25.0%
!!! TTATTTATTTTGCAGGAAGG+AGG + chr1_2:9936334-9936353 None:intergenic 30.0%
AATCAATCAATCTCAGAGAA+TGG - chr1_2:9936483-9936502 Msa0055100:three_prime_UTR 30.0%
AATCAAATGCAATTTCGTCT+AGG + chr1_2:9937089-9937108 None:intergenic 30.0%
TACAGTGGAAGATAAGTTAA+TGG - chr1_2:9937290-9937309 Msa0055100:intron 30.0%
GAAGATAAGTTAATGGTACT+AGG - chr1_2:9937297-9937316 Msa0055100:intron 30.0%
!!! TTCGGTTGATTTGTTGTTTT+TGG - chr1_2:9937377-9937396 Msa0055100:intron 30.0%
TTAGTTATTTACCGAGAGAT+AGG + chr1_2:9937601-9937620 None:intergenic 30.0%
TATCTCTCGGTAAATAACTA+AGG - chr1_2:9937600-9937619 Msa0055100:intron 30.0%
ATCTCTCGGTAAATAACTAA+GGG - chr1_2:9937601-9937620 Msa0055100:intron 30.0%
TATTTGATATTTGACGACAC+TGG - chr1_2:9937729-9937748 Msa0055100:intron 30.0%
!! TTATGTGTGTGTTGTTTATC+AGG - chr1_2:9937779-9937798 Msa0055100:intron 30.0%
!! TATGTGTGTGTTGTTTATCA+GGG - chr1_2:9937780-9937799 Msa0055100:intron 30.0%
ATTGGAGTATATACTGGATT+TGG - chr1_2:9937919-9937938 Msa0055100:CDS 30.0%
CTCAAAAGAAATGTATTCAG+AGG - chr1_2:9937949-9937968 Msa0055100:intron 30.0%
! CTCTTAATTTGAAATTGCGT+GGG - chr1_2:9938285-9938304 Msa0055100:intron 30.0%
!! TTTTCTATCTTTGTTTCCCT+AGG - chr1_2:9938440-9938459 Msa0055100:intron 30.0%
ATAATGAGAACGTAAACAGT+TGG - chr1_2:9938695-9938714 Msa0055100:intron 30.0%
AGAGAATCACAAAAAACTAG+AGG + chr1_2:9938725-9938744 None:intergenic 30.0%
AGAGAAACACAAAAAACAAG+AGG + chr1_2:9938941-9938960 None:intergenic 30.0%
!!! TTTTTTGTGTTTCTCTGAGA+AGG - chr1_2:9938945-9938964 Msa0055100:intron 30.0%
CTCTTGTGTAACTTCATATT+AGG + chr1_2:9939025-9939044 None:intergenic 30.0%
TTTCTCTTCAAATTTCTGTC+AGG - chr1_2:9939169-9939188 Msa0055100:intron 30.0%
! GTGATCATACGTTTTGTAAT+TGG - chr1_2:9939223-9939242 Msa0055100:intron 30.0%
! TCATACGTTTTGTAATTGGT+CGG - chr1_2:9939227-9939246 Msa0055100:intron 30.0%
! TCAAGAAATCTTTTGTTGAG+CGG + chr1_2:9939417-9939436 None:intergenic 30.0%
! ATTTAGGGTATTAACAGTTC+AGG - chr1_2:9939556-9939575 Msa0055100:intron 30.0%
! TTTAGGGTATTAACAGTTCA+GGG - chr1_2:9939557-9939576 Msa0055100:intron 30.0%
CCTATTACGAAAAAAACAGA+TGG + chr1_2:9939851-9939870 None:intergenic 30.0%
!!! CCATCTGTTTTTTTCGTAAT+AGG - chr1_2:9939848-9939867 Msa0055100:intron 30.0%
AAAAATCTTCTTTAGTACGG+CGG - chr1_2:9939911-9939930 Msa0055100:intron 30.0%
CGAGTCTTAACTTTATTCAT+TGG - chr1_2:9940066-9940085 Msa0055100:intron 30.0%
ATCAGAGTTAGTTCAGATAA+AGG + chr1_2:9940195-9940214 None:intergenic 30.0%
CATCTACACTACATAAAAAC+TGG + chr1_2:9940254-9940273 None:intergenic 30.0%
! CAGTTTTTATGTAGTGTAGA+TGG - chr1_2:9940252-9940271 Msa0055100:intron 30.0%
AGCTCAAAGAAAAATCTTCT+AGG + chr1_2:9940279-9940298 None:intergenic 30.0%
AAATTTCCTTGGCAAATATG+AGG + chr1_2:9940491-9940510 None:intergenic 30.0%
TAGTCATTAACACATTCGAT+GGG + chr1_2:9940537-9940556 None:intergenic 30.0%
TTAGTCATTAACACATTCGA+TGG + chr1_2:9940538-9940557 None:intergenic 30.0%
!!! AAGCTCCTTATTTTGTTTTC+AGG - chr1_2:9940740-9940759 Msa0055100:intron 30.0%
!!! AGCTCCTTATTTTGTTTTCA+GGG - chr1_2:9940741-9940760 Msa0055100:intron 30.0%
TTTCCCCTGAAAACAAAATA+AGG + chr1_2:9940748-9940767 None:intergenic 30.0%
! CCAAATCTTTTCTCATCTAA+AGG + chr1_2:9940829-9940848 None:intergenic 30.0%
CCTTTAGATGAGAAAAGATT+TGG - chr1_2:9940826-9940845 Msa0055100:intron 30.0%
! TAATTGGTGATTGCATGTAA+AGG + chr1_2:9941197-9941216 None:intergenic 30.0%
TACATGCAATCACCAATTAA+TGG - chr1_2:9941198-9941217 Msa0055100:intron 30.0%
! ATTAAACCCCATATGGTTTT+GGG + chr1_2:9941287-9941306 None:intergenic 30.0%
TTATAACATCCATTGCTTGT+AGG - chr1_2:9941427-9941446 Msa0055100:intron 30.0%
TATAACATCCATTGCTTGTA+GGG - chr1_2:9941428-9941447 Msa0055100:intron 30.0%
AAAAAAAACCCTACAAGCAA+TGG + chr1_2:9941439-9941458 None:intergenic 30.0%
! CGCTGTAAATTTTCAGTTTT+AGG + chr1_2:9941547-9941566 None:intergenic 30.0%
TTGAACAAGTTACCATTATG+AGG - chr1_2:9941570-9941589 Msa0055100:intron 30.0%
TGAACAAGTTACCATTATGA+GGG - chr1_2:9941571-9941590 Msa0055100:intron 30.0%
TGGTTCAAATACCATTATGA+GGG + chr1_2:9941679-9941698 None:intergenic 30.0%
GCAACAAAATACCATTATGA+GGG - chr1_2:9941720-9941739 Msa0055100:intron 30.0%
CAATAATGATGAAGGAAAAC+CGG + chr1_2:9941922-9941941 None:intergenic 30.0%
!! ATACTTTGGAATCAAGTGAT+GGG + chr1_2:9942271-9942290 None:intergenic 30.0%
!! AATACTTTGGAATCAAGTGA+TGG + chr1_2:9942272-9942291 None:intergenic 30.0%
TATATAAGTTAAGGGACACA+TGG + chr1_2:9942328-9942347 None:intergenic 30.0%
CACAGTACATTAACATAAAC+AGG - chr1_2:9942658-9942677 Msa0055100:CDS 30.0%
ATCATCCAAAATGCTAATTG+AGG + chr1_2:9942774-9942793 None:intergenic 30.0%
AGTAGGGTTTGGATATTAAT+TGG - chr1_2:9942839-9942858 Msa0055100:intron 30.0%
ATGTTCCTATTTCCAAGAAT+AGG - chr1_2:9942936-9942955 Msa0055100:intron 30.0%
! AAGATGCAATAATTTGTGCT+TGG + chr1_2:9943149-9943168 None:intergenic 30.0%
AGCACAAATTATTGCATCTT+CGG - chr1_2:9943149-9943168 Msa0055100:intron 30.0%
TGTCGTCTATATATGTTGAT+TGG + chr1_2:9943369-9943388 None:intergenic 30.0%
! TTCATTTTCCACAGATTCAA+TGG + chr1_2:9943462-9943481 None:intergenic 30.0%
AAGCACAATCAGTGTAAATT+AGG + chr1_2:9943697-9943716 None:intergenic 30.0%
! AATTTTGTGAACTTAGGTAG+GGG + chr1_2:9943755-9943774 None:intergenic 30.0%
! CAATTTTGTGAACTTAGGTA+GGG + chr1_2:9943756-9943775 None:intergenic 30.0%
! TCAATTTTGTGAACTTAGGT+AGG + chr1_2:9943757-9943776 None:intergenic 30.0%
AATTGAACTTGTCTTACTAG+TGG - chr1_2:9943771-9943790 Msa0055100:CDS 30.0%
! TGGTATCCAATTTTCAGATA+AGG - chr1_2:9943791-9943810 Msa0055100:CDS 30.0%
AGCATACCTTATCTGAAAAT+TGG + chr1_2:9943800-9943819 None:intergenic 30.0%
AAGAATGAACAGATCATTGT+AGG + chr1_2:9943971-9943990 None:intergenic 30.0%
! TTGATGATCAAATGTTGAAG+AGG - chr1_2:9944067-9944086 Msa0055100:five_prime_UTR 30.0%
!! ATTTTTCCGTTTTTCTCTTG+CGG - chr1_2:9944164-9944183 Msa0055100:five_prime_UTR 30.0%
GAAATGAATGAGAATCGGAT+CGG + chr1_2:9936640-9936659 None:intergenic 35.0%
TCTCAAAAAGAATTCAGCAC+AGG - chr1_2:9936789-9936808 Msa0055100:intron 35.0%
! CCATATGGTTTTTGCTTGTT+CGG - chr1_2:9936908-9936927 Msa0055100:intron 35.0%
!!! TCTCTGTAGTTGTCGTTTTA+AGG - chr1_2:9937466-9937485 Msa0055100:intron 35.0%
CAACATCTATTCCTATCTCT+CGG - chr1_2:9937587-9937606 Msa0055100:intron 35.0%
AAATATAGCGTGTAGTGCAA+CGG + chr1_2:9937714-9937733 None:intergenic 35.0%
GCTGTTATTGGAGTATATAC+TGG - chr1_2:9937913-9937932 Msa0055100:CDS 35.0%
! CTAGAGGTATGTTTGGAATT+CGG - chr1_2:9937983-9938002 Msa0055100:intron 35.0%
!!! TCGTCTTTTTTTGGTTACGA+AGG - chr1_2:9938044-9938063 Msa0055100:intron 35.0%
!!! TCTTTTTTTGGTTACGAAGG+AGG - chr1_2:9938047-9938066 Msa0055100:intron 35.0%
TAGTAGTTAGTAGAAGACAG+TGG - chr1_2:9938225-9938244 Msa0055100:intron 35.0%
! TAGAAGACAGTGGTCTTAAT+TGG - chr1_2:9938235-9938254 Msa0055100:intron 35.0%
CCACGCAATTTCAAATTAAG+AGG + chr1_2:9938287-9938306 None:intergenic 35.0%
! CCTCTTAATTTGAAATTGCG+TGG - chr1_2:9938284-9938303 Msa0055100:intron 35.0%
! GCAACTTTTCATAATAGTGC+TGG - chr1_2:9938807-9938826 Msa0055100:intron 35.0%
!! AGTATTGGTTTAGTAAGTCG+CGG - chr1_2:9938856-9938875 Msa0055100:intron 35.0%
ATGATGAGAACGTAAACAGT+TGG - chr1_2:9938911-9938930 Msa0055100:intron 35.0%
CTTGGATCGCAATATTAATG+AGG - chr1_2:9939387-9939406 Msa0055100:intron 35.0%
ATTAGCTCAATCCTTTACCT+TGG - chr1_2:9939469-9939488 Msa0055100:intron 35.0%
! CATCAAAACTTTAGTTCCAC+CGG + chr1_2:9939707-9939726 None:intergenic 35.0%
!! GGTGGAACTAAAGTTTTGAT+GGG - chr1_2:9939706-9939725 Msa0055100:intron 35.0%
!! GAACTAAAGTTTTGATGGGA+TGG - chr1_2:9939710-9939729 Msa0055100:intron 35.0%
TTCAACAAGGTTCAATGACA+TGG + chr1_2:9939807-9939826 None:intergenic 35.0%
! TATACTGAGCTTGTTCAACA+AGG + chr1_2:9939820-9939839 None:intergenic 35.0%
!! GACAGTATTGACATTGATCT+CGG - chr1_2:9939972-9939991 Msa0055100:intron 35.0%
AGTTAAGACTCGATTTCACA+TGG + chr1_2:9940058-9940077 None:intergenic 35.0%
! TTTATTCATTGGCCTAACAG+AGG - chr1_2:9940077-9940096 Msa0055100:intron 35.0%
! TTATTCATTGGCCTAACAGA+GGG - chr1_2:9940078-9940097 Msa0055100:intron 35.0%
TATATTGGATGCATGAAGTC+AGG - chr1_2:9940144-9940163 Msa0055100:intron 35.0%
CTGAACACAAAAATGGATAC+TGG + chr1_2:9940352-9940371 None:intergenic 35.0%
!!! GCTCCTTATTTTGTTTTCAG+GGG - chr1_2:9940742-9940761 Msa0055100:intron 35.0%
AACCTGATTGGTGGAAATTT+GGG - chr1_2:9940779-9940798 Msa0055100:intron 35.0%
AAGAGATGACAGCATATAAC+AGG + chr1_2:9941070-9941089 None:intergenic 35.0%
CACCAATTAATGGAATCATC+TGG - chr1_2:9941208-9941227 Msa0055100:intron 35.0%
GACCAGATGATTCCATTAAT+TGG + chr1_2:9941213-9941232 None:intergenic 35.0%
TGAGTAGTGATGTGAAAAAC+TGG - chr1_2:9941255-9941274 Msa0055100:intron 35.0%
GATAATGCCCAAAACCATAT+GGG - chr1_2:9941277-9941296 Msa0055100:intron 35.0%
ATAATGCCCAAAACCATATG+GGG - chr1_2:9941278-9941297 Msa0055100:intron 35.0%
! CATTAAACCCCATATGGTTT+TGG + chr1_2:9941288-9941307 None:intergenic 35.0%
CAAAACCATATGGGGTTTAA+TGG - chr1_2:9941286-9941305 Msa0055100:intron 35.0%
! GAGTTTGATAGCATTAACCA+TGG - chr1_2:9941342-9941361 Msa0055100:CDS 35.0%
! TCTATTTTCCTTCTCTACCA+TGG + chr1_2:9941362-9941381 None:intergenic 35.0%
!!! TTCAGTTTTAGGTTCTTCCA+TGG + chr1_2:9941536-9941555 None:intergenic 35.0%
GTGGTTCAAATACCATTATG+AGG + chr1_2:9941680-9941699 None:intergenic 35.0%
CGCAACAAAATACCATTATG+AGG - chr1_2:9941719-9941738 Msa0055100:intron 35.0%
!!! TTTTTTGCATGCCCTCATAA+TGG + chr1_2:9941734-9941753 None:intergenic 35.0%
CATTATGACCATCCTTTCAT+CGG - chr1_2:9941864-9941883 Msa0055100:intron 35.0%
ATTATGACCATCCTTTCATC+GGG - chr1_2:9941865-9941884 Msa0055100:intron 35.0%
TTATCATGGAAAATGGTGAC+AGG + chr1_2:9942004-9942023 None:intergenic 35.0%
TTTATCATAGTTTCCAGCAC+AGG - chr1_2:9942134-9942153 Msa0055100:intron 35.0%
AGAATGTAGAACTCTTTGAC+AGG - chr1_2:9942302-9942321 Msa0055100:intron 35.0%
! TGCAACATGCATTTTCCATT+AGG + chr1_2:9942412-9942431 None:intergenic 35.0%
AAAGCAATAAAGATCAACGC+TGG + chr1_2:9942577-9942596 None:intergenic 35.0%
!! CTCAATGTCTTATTTGCACA+AGG - chr1_2:9942687-9942706 Msa0055100:CDS 35.0%
!! AATGTCTTATTTGCACAAGG+AGG - chr1_2:9942690-9942709 Msa0055100:CDS 35.0%
CATCTAGATGTCCTAATGTT+CGG - chr1_2:9942803-9942822 Msa0055100:intron 35.0%
TTCTCAATTAGCCGAACATT+AGG + chr1_2:9942817-9942836 None:intergenic 35.0%
AATTGAGAATGAGTAGGGTT+TGG - chr1_2:9942828-9942847 Msa0055100:intron 35.0%
TGTGTCCTATTCTTGGAAAT+AGG + chr1_2:9942944-9942963 None:intergenic 35.0%
GATTGGTATTCTTTCCTGTT+TGG - chr1_2:9943074-9943093 Msa0055100:intron 35.0%
! GATTTTTCTCTCAACCAAAC+AGG + chr1_2:9943091-9943110 None:intergenic 35.0%
GCACAAATTATTGCATCTTC+GGG - chr1_2:9943150-9943169 Msa0055100:intron 35.0%
TGTTGTATCATCATAGGCAT+AGG + chr1_2:9943323-9943342 None:intergenic 35.0%
TGCCTATGATGATACAACAT+TGG - chr1_2:9943324-9943343 Msa0055100:intron 35.0%
GCCTATGATGATACAACATT+GGG - chr1_2:9943325-9943344 Msa0055100:intron 35.0%
TCCCAATGTTGTATCATCAT+AGG + chr1_2:9943329-9943348 None:intergenic 35.0%
ATGATACAACATTGGGATCA+TGG - chr1_2:9943332-9943351 Msa0055100:intron 35.0%
CAACATATATAGACGACAGT+CGG - chr1_2:9943371-9943390 Msa0055100:intron 35.0%
CAATGGTCATAAAGTAGTGA+CGG + chr1_2:9943445-9943464 None:intergenic 35.0%
CTTTATGACCATTGAATCTG+TGG - chr1_2:9943451-9943470 Msa0055100:intron 35.0%
ACATGTTTCACTACTTGTCT+CGG - chr1_2:9943847-9943866 Msa0055100:intron 35.0%
CAAAGCTCTCAATGTTGTAT+TGG + chr1_2:9943920-9943939 None:intergenic 35.0%
!! TGGAAGTGCTATATGATCAT+AGG - chr1_2:9944008-9944027 Msa0055100:CDS 35.0%
!! AATATAATTTGCTGTCTGGG+TGG + chr1_2:9944147-9944166 None:intergenic 35.0%
TTTGCAGGAAGGAGGTAAAA+TGG + chr1_2:9936326-9936345 None:intergenic 40.0%
AAGAAAGCTAAGAGGAGAGA+AGG + chr1_2:9936574-9936593 None:intergenic 40.0%
ATGAGAATCGGATCGGAATA+AGG + chr1_2:9936633-9936652 None:intergenic 40.0%
TATGGCAAGATGCAGAGAAT+CGG - chr1_2:9936749-9936768 Msa0055100:intron 40.0%
CCGAACAAGCAAAAACCATA+TGG + chr1_2:9936911-9936930 None:intergenic 40.0%
!! CTTTTGATCGAAGGCATGTT+CGG - chr1_2:9937037-9937056 Msa0055100:intron 40.0%
AAGCACTAACAACACAGACA+TGG + chr1_2:9937149-9937168 None:intergenic 40.0%
!! TTTTTGTTTCCAGAGGCCTA+AGG - chr1_2:9937263-9937282 Msa0055100:intron 40.0%
TCTTCCACTGTAAGAACCTT+AGG + chr1_2:9937282-9937301 None:intergenic 40.0%
!! TGTGTTGTTTATCAGGGATC+TGG - chr1_2:9937786-9937805 Msa0055100:intron 40.0%
CAATAACAGCAAGAAGCCTA+CGG + chr1_2:9937903-9937922 None:intergenic 40.0%
GAAATGTATTCAGAGGGTCT+TGG - chr1_2:9937956-9937975 Msa0055100:intron 40.0%
CGAATTCCAAACATACCTCT+AGG + chr1_2:9937985-9938004 None:intergenic 40.0%
!!! GTGCTTCAGTCGTCTTTTTT+TGG - chr1_2:9938035-9938054 Msa0055100:intron 40.0%
AGGCTAAAGTAGAGGCAAAT+TGG - chr1_2:9938100-9938119 Msa0055100:intron 40.0%
TTAAAGATGTAATGCACCGC+AGG - chr1_2:9938492-9938511 Msa0055100:intron 40.0%
!!! GTGTTTTAACACAATGCCTG+CGG + chr1_2:9938511-9938530 None:intergenic 40.0%
! TACGTTTTGTAATTGGTCGG+AGG - chr1_2:9939230-9939249 Msa0055100:intron 40.0%
GTTATTGACAGTCCTAATCG+AGG - chr1_2:9939358-9939377 Msa0055100:intron 40.0%
!! CGGTGGAACTAAAGTTTTGA+TGG - chr1_2:9939705-9939724 Msa0055100:intron 40.0%
TTCGTAATAGGAAAGTCACG+AGG - chr1_2:9939860-9939879 Msa0055100:intron 40.0%
GACATTGATCTCGGTAATGA+TGG - chr1_2:9939981-9940000 Msa0055100:intron 40.0%
GAGCAATTAAACCCTCTGTT+AGG + chr1_2:9940092-9940111 None:intergenic 40.0%
ATCCACAGATGTGGTAACTT+CGG + chr1_2:9940412-9940431 None:intergenic 40.0%
AGGGAGAAAAGATTAAGCAC+AGG + chr1_2:9940597-9940616 None:intergenic 40.0%
!! TTGTTTTCAGGGGAAAGCTT+TGG - chr1_2:9940752-9940771 Msa0055100:intron 40.0%
! AGCTTTGGTATGAACCTGAT+TGG - chr1_2:9940767-9940786 Msa0055100:intron 40.0%
TTTGGTATGAACCTGATTGG+TGG - chr1_2:9940770-9940789 Msa0055100:intron 40.0%
GAACCTGATTGGTGGAAATT+TGG - chr1_2:9940778-9940797 Msa0055100:intron 40.0%
ACCTGATTGGTGGAAATTTG+GGG - chr1_2:9940780-9940799 Msa0055100:intron 40.0%
GGATAATGCCCAAAACCATA+TGG - chr1_2:9941276-9941295 Msa0055100:intron 40.0%
GCAATCCATTAAACCCCATA+TGG + chr1_2:9941294-9941313 None:intergenic 40.0%
AGCATTAACCATGGTAGAGA+AGG - chr1_2:9941351-9941370 Msa0055100:CDS 40.0%
TGTGGGTATAATAGTGTCCA+TGG - chr1_2:9941516-9941535 Msa0055100:intron 40.0%
!! ACACGTTGGTGGTTACAAAT+AGG + chr1_2:9941611-9941630 None:intergenic 40.0%
TCACAACTATGTCACAACGT+TGG - chr1_2:9941630-9941649 Msa0055100:intron 40.0%
!! CAACGTTGGTGGTTACAAAT+AGG - chr1_2:9941644-9941663 Msa0055100:intron 40.0%
ATGACAATGGCAGTAAAGAC+GGG + chr1_2:9941778-9941797 None:intergenic 40.0%
GATGACAATGGCAGTAAAGA+CGG + chr1_2:9941779-9941798 None:intergenic 40.0%
! ACGATGACTGATGATGACAA+TGG + chr1_2:9941791-9941810 None:intergenic 40.0%
GAGTCCTAGTCAAGATATAG+CGG + chr1_2:9941832-9941851 None:intergenic 40.0%
GATGGTCATAATGGTAACAG+AGG + chr1_2:9941857-9941876 None:intergenic 40.0%
CGATGAAAGGATGGTCATAA+TGG + chr1_2:9941866-9941885 None:intergenic 40.0%
! GATGACGGCAATAATGATGA+AGG + chr1_2:9941930-9941949 None:intergenic 40.0%
! AATTCAGGTGGTGATGATGA+CGG + chr1_2:9941945-9941964 None:intergenic 40.0%
GGAAAATGGTGACAGGAATA+TGG + chr1_2:9941997-9942016 None:intergenic 40.0%
CTAGTATTATTGACCTGTGC+TGG + chr1_2:9942150-9942169 None:intergenic 40.0%
! ATAGATCGGTTGATACGGTA+TGG - chr1_2:9942376-9942395 Msa0055100:intron 40.0%
!!! ACTGCCTAGCTTTAGTTTTG+TGG - chr1_2:9942740-9942759 Msa0055100:CDS 40.0%
CATGCCACAAAACTAAAGCT+AGG + chr1_2:9942747-9942766 None:intergenic 40.0%
!!! CTAGCTTTAGTTTTGTGGCA+TGG - chr1_2:9942745-9942764 Msa0055100:CDS 40.0%
TCGGCTAATTGAGAATGAGT+AGG - chr1_2:9942822-9942841 Msa0055100:intron 40.0%
CGGCTAATTGAGAATGAGTA+GGG - chr1_2:9942823-9942842 Msa0055100:intron 40.0%
ATTGCACTGTGCCATATTCT+TGG - chr1_2:9942864-9942883 Msa0055100:intron 40.0%
TCCAATACCAGCCAAGAATA+TGG + chr1_2:9942878-9942897 None:intergenic 40.0%
!! ATGGTGTTGTGTCCTATTCT+TGG + chr1_2:9942951-9942970 None:intergenic 40.0%
! ATACCAATCTGACTGGCTAT+AGG + chr1_2:9943063-9943082 None:intergenic 40.0%
GGAAAGAATACCAATCTGAC+TGG + chr1_2:9943070-9943089 None:intergenic 40.0%
CAAATTATTGCATCTTCGGG+TGG - chr1_2:9943153-9943172 Msa0055100:intron 40.0%
AACATTGGGATCATGGATGA+TGG - chr1_2:9943339-9943358 Msa0055100:intron 40.0%
ACATTGGGATCATGGATGAT+GGG - chr1_2:9943340-9943359 Msa0055100:intron 40.0%
! AAAGTAGTGACGGAAACATG+AGG + chr1_2:9943435-9943454 None:intergenic 40.0%
TTCAGATAAGGTATGCTCGT+TGG - chr1_2:9943803-9943822 Msa0055100:intron 40.0%
GAGACAAGTAGTGAAACATG+TGG + chr1_2:9943848-9943867 None:intergenic 40.0%
!! AAAGCACCGCAAGAGAAAAA+CGG + chr1_2:9944173-9944192 None:intergenic 40.0%
CGTACAAGATAGAGAGACAG+AGG + chr1_2:9936380-9936399 None:intergenic 45.0%
GTTTGTAGTAGCACTGTAGC+AGG - chr1_2:9936404-9936423 Msa0055100:three_prime_UTR 45.0%
CGCAAGAGAAGAAAGCTAAG+AGG + chr1_2:9936582-9936601 None:intergenic 45.0%
GCTTGTTCGGATATGAAGCA+CGG - chr1_2:9936921-9936940 Msa0055100:intron 45.0%
! AGCATGACGCTTTTGATCGA+AGG - chr1_2:9937028-9937047 Msa0055100:intron 45.0%
AGTTAATGGTACTAGGGTGC+AGG - chr1_2:9937304-9937323 Msa0055100:intron 45.0%
TGTTTATCAGGGATCTGGAG+AGG - chr1_2:9937791-9937810 Msa0055100:intron 45.0%
AGCTGAGATGGAATTGTCGT+TGG - chr1_2:9937825-9937844 Msa0055100:intron 45.0%
!! AAGGGTACCTCAAAGGACAA+CGG - chr1_2:9937857-9937876 Msa0055100:intron 45.0%
! AAACTGGTTCTTCTGACCGT+AGG - chr1_2:9937884-9937903 Msa0055100:intron 45.0%
!! CGTAGGCTTCTTGCTGTTAT+TGG - chr1_2:9937901-9937920 Msa0055100:CDS 45.0%
! TGGATGCCTAGAGGTATGTT+TGG - chr1_2:9937976-9937995 Msa0055100:intron 45.0%
! AGGAGGTTTGAGACTTTGTC+TGG - chr1_2:9938064-9938083 Msa0055100:intron 45.0%
TTGAGACTTTGTCTGGTGAG+AGG - chr1_2:9938071-9938090 Msa0055100:intron 45.0%
! AAGTAGAGGCAAATTGGCCT+TGG - chr1_2:9938106-9938125 Msa0055100:intron 45.0%
CCTAAGATCAAGTCTCACCA+AGG + chr1_2:9938126-9938145 None:intergenic 45.0%
CCTTGGTGAGACTTGATCTT+AGG - chr1_2:9938123-9938142 Msa0055100:intron 45.0%
! ATGCTTCTTGACTAGTTCGC+TGG - chr1_2:9939075-9939094 Msa0055100:intron 45.0%
TTCCACGCACTTATCCATAC+TGG - chr1_2:9939256-9939275 Msa0055100:intron 45.0%
TCCTAATCGAGGTGATAGCT+TGG - chr1_2:9939369-9939388 Msa0055100:intron 45.0%
TCCAAGCTATCACCTCGATT+AGG + chr1_2:9939373-9939392 None:intergenic 45.0%
ACTCGCACAATCCAAGGTAA+AGG + chr1_2:9939483-9939502 None:intergenic 45.0%
TTTACCTTGGATTGTGCGAG+TGG - chr1_2:9939482-9939501 Msa0055100:intron 45.0%
!! GGAGACTTGAAGCATTGATG+TGG - chr1_2:9939662-9939681 Msa0055100:intron 45.0%
!! GACTTGAAGCATTGATGTGG+TGG - chr1_2:9939665-9939684 Msa0055100:intron 45.0%
!! GTTTTGATGGGATGGAGCAA+AGG - chr1_2:9939718-9939737 Msa0055100:intron 45.0%
ATCCAATATATGCGCCATCC+TGG + chr1_2:9940134-9940153 None:intergenic 45.0%
GAAGTCAGGAGACGTGATAT+CGG - chr1_2:9940158-9940177 Msa0055100:intron 45.0%
CCAGGGAATGCAAATTTCCT+TGG + chr1_2:9940502-9940521 None:intergenic 45.0%
CCAAGGAAATTTGCATTCCC+TGG - chr1_2:9940499-9940518 Msa0055100:intron 45.0%
TCCCCAAATTTCCACCAATC+AGG + chr1_2:9940784-9940803 None:intergenic 45.0%
TACCATTATGAGGGCAACGT+TGG - chr1_2:9941580-9941599 Msa0055100:intron 45.0%
TACCAACGTTGCCCTCATAA+TGG + chr1_2:9941585-9941604 None:intergenic 45.0%
ACATAGTTGTGACACGTTGG+TGG + chr1_2:9941622-9941641 None:intergenic 45.0%
GTGACATAGTTGTGACACGT+TGG + chr1_2:9941625-9941644 None:intergenic 45.0%
CAACTATGTCACAACGTTGG+TGG - chr1_2:9941633-9941652 Msa0055100:intron 45.0%
ACAAAGTTGTGACACGTTGG+TGG + chr1_2:9941699-9941718 None:intergenic 45.0%
CAAGATATAGCGGCTAGTGA+CGG + chr1_2:9941822-9941841 None:intergenic 45.0%
CTAGCCGCTATATCTTGACT+AGG - chr1_2:9941825-9941844 Msa0055100:intron 45.0%
AGGTATTTCCGACATGCATC+TGG - chr1_2:9942606-9942625 Msa0055100:CDS 45.0%
!!! GCTTTAGTTTTGTGGCATGG+CGG - chr1_2:9942748-9942767 Msa0055100:CDS 45.0%
! GCATTTTGGATGATGCAGTG+TGG - chr1_2:9942780-9942799 Msa0055100:intron 45.0%
GCCATATTCTTGGCTGGTAT+TGG - chr1_2:9942874-9942893 Msa0055100:intron 45.0%
CTTGTCAGCTCTCTCAACTA+TGG + chr1_2:9943024-9943043 None:intergenic 45.0%
TAGTTGAGAGAGCTGACAAG+AGG - chr1_2:9943024-9943043 Msa0055100:intron 45.0%
GAACCTATAGCCAGTCAGAT+TGG - chr1_2:9943057-9943076 Msa0055100:intron 45.0%
TGCTGCAGTAGCATCAGTAA+AGG - chr1_2:9943397-9943416 Msa0055100:intron 45.0%
! GTGACGGAAACATGAGGATT+GGG + chr1_2:9943429-9943448 None:intergenic 45.0%
! AGTGACGGAAACATGAGGAT+TGG + chr1_2:9943430-9943449 None:intergenic 45.0%
!! ATAATAATAAAAAATTATCA+AGG + chr1_2:9938533-9938552 None:intergenic 5.0%
!!! ATTTTTTTAAAAAAAAACTA+TGG + chr1_2:9940383-9940402 None:intergenic 5.0%
!! AAAAAATTTATAAAACAAAA+TGG + chr1_2:9940678-9940697 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTACATT+TGG - chr1_2:9941451-9941470 Msa0055100:intron 5.0%
TGTAGTAGCACTGTAGCAGG+CGG - chr1_2:9936407-9936426 Msa0055100:three_prime_UTR 50.0%
CGCTTCGAAGTCGATGTTGT+TGG + chr1_2:9936517-9936536 None:intergenic 50.0%
!! ACAACATCGACTTCGAAGCG+AGG - chr1_2:9936517-9936536 Msa0055100:three_prime_UTR 50.0%
CTTTCTTCTCTTGCGTCGCT+TGG - chr1_2:9936587-9936606 Msa0055100:three_prime_UTR 50.0%
GATCGGAATAAGGAACCTGC+CGG + chr1_2:9936623-9936642 None:intergenic 50.0%
!! TCGAAGGCATGTTCGGTGTT+CGG - chr1_2:9937044-9937063 Msa0055100:intron 50.0%
CTGTAAGAACCTTAGGCCTC+TGG + chr1_2:9937275-9937294 None:intergenic 50.0%
GAGGCCTAAGGTTCTTACAG+TGG - chr1_2:9937275-9937294 Msa0055100:intron 50.0%
TTATCAGGGATCTGGAGAGG+AGG - chr1_2:9937794-9937813 Msa0055100:intron 50.0%
GAGGATTGTGGAAGCTGAGA+TGG - chr1_2:9937813-9937832 Msa0055100:intron 50.0%
! TTTGAGGTACCCTTGGCTCT+TGG + chr1_2:9937851-9937870 None:intergenic 50.0%
!! AAGAGCCAAGGGTACCTCAA+AGG - chr1_2:9937850-9937869 Msa0055100:intron 50.0%
!! GTTGTCCTTTGAGGTACCCT+TGG + chr1_2:9937858-9937877 None:intergenic 50.0%
TTTGCTGCCGTTGTCCTTTG+AGG + chr1_2:9937867-9937886 None:intergenic 50.0%
AAAGGACAACGGCAGCAAAC+TGG - chr1_2:9937868-9937887 Msa0055100:intron 50.0%
ACTTTGTCTGGTGAGAGGCA+GGG - chr1_2:9938076-9938095 Msa0055100:intron 50.0%
AGCCAGTATGGATAAGTGCG+TGG + chr1_2:9939261-9939280 None:intergenic 50.0%
TTAGTACGGCGGTTCAGAAC+TGG - chr1_2:9939922-9939941 Msa0055100:intron 50.0%
TAGTACGGCGGTTCAGAACT+GGG - chr1_2:9939923-9939942 Msa0055100:intron 50.0%
CTCCGAAGTTACCACATCTG+TGG - chr1_2:9940407-9940426 Msa0055100:CDS 50.0%
ATCGGTGACATCCACAGATG+TGG + chr1_2:9940421-9940440 None:intergenic 50.0%
GGGATGCCTCATATTTGCCA+AGG - chr1_2:9940482-9940501 Msa0055100:intron 50.0%
TTGCATTCCCTGGCGTTTAG+AGG - chr1_2:9940509-9940528 Msa0055100:intron 50.0%
ATGGGAACCTCTAAACGCCA+GGG + chr1_2:9940519-9940538 None:intergenic 50.0%
GGCTTTGCATGCCCTCATAA+TGG - chr1_2:9941665-9941684 Msa0055100:intron 50.0%
GCGACAAAGTTGTGACACGT+TGG + chr1_2:9941702-9941721 None:intergenic 50.0%
GGCAGTAAAGACGGGTGAAA+AGG + chr1_2:9941770-9941789 None:intergenic 50.0%
GCGAATAGTGGCAATGGTGA+TGG + chr1_2:9941893-9941912 None:intergenic 50.0%
CCACAAGCGAATAGTGGCAA+TGG + chr1_2:9941899-9941918 None:intergenic 50.0%
CCATTGCCACTATTCGCTTG+TGG - chr1_2:9941896-9941915 Msa0055100:intron 50.0%
CAAGCGAACCAGATGCATGT+CGG + chr1_2:9942617-9942636 None:intergenic 50.0%
! GGCGGCCTCAATTAGCATTT+TGG - chr1_2:9942766-9942785 Msa0055100:intron 50.0%
CACTGTGCCATATTCTTGGC+TGG - chr1_2:9942868-9942887 Msa0055100:intron 50.0%
TGCATCTTCGGGTGGATATG+AGG - chr1_2:9943161-9943180 Msa0055100:intron 50.0%
GCATCTTCGGGTGGATATGA+GGG - chr1_2:9943162-9943181 Msa0055100:intron 50.0%
!! GGTATGCTCGTTGGCTTGAT+TGG - chr1_2:9943812-9943831 Msa0055100:intron 50.0%
!! ACATCGACTTCGAAGCGAGG+AGG - chr1_2:9936520-9936539 Msa0055100:three_prime_UTR 55.0%
GGATCTGGAGAGGAGGATTG+TGG - chr1_2:9937801-9937820 Msa0055100:intron 55.0%
TTGTCGTTGGCCAAGAGCCA+AGG - chr1_2:9937838-9937857 Msa0055100:intron 55.0%
TGTCGTTGGCCAAGAGCCAA+GGG - chr1_2:9937839-9937858 Msa0055100:intron 55.0%
AGAGGGTCTTGGATGCCTAG+AGG - chr1_2:9937967-9937986 Msa0055100:intron 55.0%
GACTTTGTCTGGTGAGAGGC+AGG - chr1_2:9938075-9938094 Msa0055100:intron 55.0%
GGCAGGGTAGGCTAAAGTAG+AGG - chr1_2:9938092-9938111 Msa0055100:intron 55.0%
! TTGACTAGTTCGCTGGTCGC+TGG - chr1_2:9939082-9939101 Msa0055100:intron 55.0%
! TGACTAGTTCGCTGGTCGCT+GGG - chr1_2:9939083-9939102 Msa0055100:intron 55.0%
CTGTCCACTCGCACAATCCA+AGG + chr1_2:9939489-9939508 None:intergenic 55.0%
CTTGGATTGTGCGAGTGGAC+AGG - chr1_2:9939487-9939506 Msa0055100:intron 55.0%
GGCCAGGATGGCGCATATAT+TGG - chr1_2:9940129-9940148 Msa0055100:intron 55.0%
GATGGGAACCTCTAAACGCC+AGG + chr1_2:9940520-9940539 None:intergenic 55.0%
GATGGAGCCCGATGAAAGGA+TGG + chr1_2:9941875-9941894 None:intergenic 55.0%
!! TGGTGATGGAGCCCGATGAA+AGG + chr1_2:9941879-9941898 None:intergenic 55.0%
TGCCACTATTCGCTTGTGGC+CGG - chr1_2:9941900-9941919 Msa0055100:intron 55.0%
AACCGGCCACAAGCGAATAG+TGG + chr1_2:9941905-9941924 None:intergenic 55.0%
AGTAGCACTGTAGCAGGCGG+CGG - chr1_2:9936410-9936429 Msa0055100:three_prime_UTR 60.0%
GCGGCGGTAACAGAGAGTTG+AGG - chr1_2:9936426-9936445 Msa0055100:three_prime_UTR 60.0%
!! GTCGCTTGGCTTTACGTCGC+CGG - chr1_2:9936601-9936620 Msa0055100:three_prime_UTR 60.0%
TGTCTGGTGAGAGGCAGGGT+AGG - chr1_2:9938080-9938099 Msa0055100:intron 60.0%
GCTCTTCTTGACCGTCGACG+TGG - chr1_2:9940108-9940127 Msa0055100:intron 60.0%
!! CTTGGCTTTACGTCGCCGGC+AGG - chr1_2:9936605-9936624 Msa0055100:three_prime_UTR 65.0%
TCTTGACCGTCGACGTGGCC+AGG - chr1_2:9940113-9940132 Msa0055100:intron 65.0%
GACCGTCGACGTGGCCAGGA+TGG - chr1_2:9940117-9940136 Msa0055100:intron 70.0%
CGCCATCCTGGCCACGTCGA+CGG + chr1_2:9940122-9940141 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 9936322 9944246 9936322 ID=Msa0055100;Name=Msa0055100
chr1_2 mRNA 9936322 9944246 9936322 ID=Msa0055100-mRNA-1;Parent=Msa0055100;Name=Msa0055100-mRNA-1;_AED=0.14;_eAED=0.14;_QI=180|1|1|1|0.81|0.83|12|416|343
chr1_2 exon 9936322 9936760 9936322 ID=Msa0055100-mRNA-1:exon:3755;Parent=Msa0055100-mRNA-1
chr1_2 exon 9937150 9937262 9937150 ID=Msa0055100-mRNA-1:exon:3754;Parent=Msa0055100-mRNA-1
chr1_2 exon 9937889 9937960 9937889 ID=Msa0055100-mRNA-1:exon:3753;Parent=Msa0055100-mRNA-1
chr1_2 exon 9939756 9939806 9939756 ID=Msa0055100-mRNA-1:exon:3752;Parent=Msa0055100-mRNA-1
chr1_2 exon 9940384 9940471 9940384 ID=Msa0055100-mRNA-1:exon:3751;Parent=Msa0055100-mRNA-1
chr1_2 exon 9940575 9940698 9940575 ID=Msa0055100-mRNA-1:exon:3750;Parent=Msa0055100-mRNA-1
chr1_2 exon 9941127 9941199 9941127 ID=Msa0055100-mRNA-1:exon:3749;Parent=Msa0055100-mRNA-1
chr1_2 exon 9941317 9941377 9941317 ID=Msa0055100-mRNA-1:exon:3748;Parent=Msa0055100-mRNA-1
chr1_2 exon 9942580 9942767 9942580 ID=Msa0055100-mRNA-1:exon:3747;Parent=Msa0055100-mRNA-1
chr1_2 exon 9943243 9943292 9943243 ID=Msa0055100-mRNA-1:exon:3746;Parent=Msa0055100-mRNA-1
chr1_2 exon 9943758 9943821 9943758 ID=Msa0055100-mRNA-1:exon:3745;Parent=Msa0055100-mRNA-1
chr1_2 exon 9943942 9944246 9943942 ID=Msa0055100-mRNA-1:exon:3744;Parent=Msa0055100-mRNA-1
chr1_2 five_prime_UTR 9944067 9944246 9944067 ID=Msa0055100-mRNA-1:five_prime_utr;Parent=Msa0055100-mRNA-1
chr1_2 CDS 9943942 9944066 9943942 ID=Msa0055100-mRNA-1:cds;Parent=Msa0055100-mRNA-1
chr1_2 CDS 9943758 9943821 9943758 ID=Msa0055100-mRNA-1:cds;Parent=Msa0055100-mRNA-1
chr1_2 CDS 9943243 9943292 9943243 ID=Msa0055100-mRNA-1:cds;Parent=Msa0055100-mRNA-1
chr1_2 CDS 9942580 9942767 9942580 ID=Msa0055100-mRNA-1:cds;Parent=Msa0055100-mRNA-1
chr1_2 CDS 9941317 9941377 9941317 ID=Msa0055100-mRNA-1:cds;Parent=Msa0055100-mRNA-1
chr1_2 CDS 9941127 9941199 9941127 ID=Msa0055100-mRNA-1:cds;Parent=Msa0055100-mRNA-1
chr1_2 CDS 9940575 9940698 9940575 ID=Msa0055100-mRNA-1:cds;Parent=Msa0055100-mRNA-1
chr1_2 CDS 9940384 9940471 9940384 ID=Msa0055100-mRNA-1:cds;Parent=Msa0055100-mRNA-1
chr1_2 CDS 9939756 9939806 9939756 ID=Msa0055100-mRNA-1:cds;Parent=Msa0055100-mRNA-1
chr1_2 CDS 9937889 9937960 9937889 ID=Msa0055100-mRNA-1:cds;Parent=Msa0055100-mRNA-1
chr1_2 CDS 9937150 9937262 9937150 ID=Msa0055100-mRNA-1:cds;Parent=Msa0055100-mRNA-1
chr1_2 CDS 9936738 9936760 9936738 ID=Msa0055100-mRNA-1:cds;Parent=Msa0055100-mRNA-1
chr1_2 three_prime_UTR 9936322 9936737 9936322 ID=Msa0055100-mRNA-1:three_prime_utr;Parent=Msa0055100-mRNA-1
Gene Sequence

>Msa0055100

ATGGATACATTACCAACAACATCGACTTCGAAGCGAGGAGGAAGATCAAAACTCGTTCAAACATCAAAACCTTCTCTCCTCTTAGCTTTCTTCTCTTGCGTCGCTTGGCTTTACGTCGCCGGCAGGTTATGGCAAGATGCAGAGAATCGGAATTTACTTGCTAGTCTTCTCAAAAAGAATTCAGCACAGAGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTACTAGGGTGCAGGGATCTGGAGAGGAGGATTGTGGAAGCTGAGATGGAATTGTCGTTGGCCAAGAGCCAAGGGTACCTCAAAGGACAACGGCAGCAAACTGGTTCTTCTGACCGTAGGCTTCTTGCTGTTATTGGAGTATATACTGGATTTGGAAGCAAACTCAAAAGAAATGTATTCAGAGGGTCTTGGATGCCTAGAGGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGATCATACGTTTTGTAATTGGTCGGAGTCCTAATCGAGGTGATAGCTTGGATCGCAATATTAATGAGGAAAACCGCTCAACAAAAGATTTCTTGATTCTTGAAAGTCACGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGCAAAAATCTTCTTTAGTACGGCGGTTCAGAACTGGGATGCTGATTTTTATGTGAAAGTTGATGACAGTATTGACATTGATCTCGAGGGTTTAATTGCTCTTCTTGACCGTCGACGTGGCCAGGATGGCGCATATATTGGATGCATGAAGTCAGGAGACGTGATATCGGAAGAGGGAAAGCTTTGGTATGAACCTGATTGGTGGAAATTTGGGGATGAAAAATCGTATTTCCGACATGCATCTGGTTCGCTTGTTATACTTTCGAAGAATTTGGCACAGTACATTAACATAAACAGTGTATCTTTGAAGACCTATGCCTATGATGATACAACATTGGGATCATGGATGATGGGCGTCCAATCAACATATATAGACGACAGTCGGCTTTGCTGCAGTAGCATCAGTAAAGATAAGGTATGCTCGTTGGCTTGA

Protein sequence

>Msa0055100

MDTLPTTSTSKRGGRSKLVQTSKPSLLLAFFSCVAWLYVAGRLWQDAENRNLLASLLKKNSAQRPKVLTVEDKLMVLGCRDLERRIVEAEMELSLAKSQGYLKGQRQQTGSSDRRLLAVIGVYTGFGSKLKRNVFRGSWMPRGDALKKLEERGVIIRFVIGRSPNRGDSLDRNINEENRSTKDFLILESHEEAQEELPKKAKIFFSTAVQNWDADFYVKVDDSIDIDLEGLIALLDRRRGQDGAYIGCMKSGDVISEEGKLWYEPDWWKFGDEKSYFRHASGSLVILSKNLAQYININSVSLKTYAYDDTTLGSWMMGVQSTYIDDSRLCCSSISKDKVCSLA*