AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1207730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207730 MtrunA17_Chr4g0056721 100.000 70 0 0 1 70 1 70 4.87e-48 145
Msa1207730 MtrunA17_Chr4g0026341 94.286 70 4 0 1 70 1 70 9.29e-46 140
Msa1207730 MtrunA17_Chr2g0321091 78.462 65 14 0 6 70 5 69 5.16e-34 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207730 AT4G21105.1 75.758 66 16 0 5 70 3 68 3.08e-34 111
Msa1207730 AT4G21105.3 75.758 66 16 0 5 70 3 68 3.08e-34 111
Msa1207730 AT4G21105.2 70.000 40 12 0 5 44 3 42 1.83e-16 66.2

Find 29 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTATGTTTACGCAAATTC+TGG 0.261524 8_1:+65485819 None:intergenic
TATAATATGTCGCATGGAAT+AGG 0.329548 8_1:-65485595 Msa1207730:CDS
GAGCGGAATTCTTGATCATT+TGG 0.343043 8_1:-65488759 Msa1207730:five_prime_UTR
AACAGACGTAATCTTATCAT+AGG 0.410999 8_1:+65485784 None:intergenic
CTATACTTTCACATTCAATC+AGG 0.427209 8_1:-65488610 Msa1207730:intron
GCGAAAACTCAAGGGTAGAA+TGG 0.454035 8_1:-65488737 Msa1207730:five_prime_UTR
CGTAAACATACTCACTTGAA+AGG 0.474985 8_1:-65485809 Msa1207730:CDS
AGCTTCTCTCGTGGTCTGAA+TGG 0.478089 8_1:+65485863 None:intergenic
TATGCATTTGTTCAGGGACG+AGG 0.478227 8_1:-65485622 Msa1207730:intron
CGAAAACTCAAGGGTAGAAT+GGG 0.481399 8_1:-65488736 Msa1207730:five_prime_UTR
GGTCTGAATGGTGCTTCTGT+TGG 0.499882 8_1:+65485875 None:intergenic
GATCATTTGGCGAAAACTCA+AGG 0.504082 8_1:-65488746 Msa1207730:five_prime_UTR
CTACTCCATCAGAAATAGTC+AGG 0.504313 8_1:+65485559 None:intergenic
ATCACACTTTCGCGCATAGG+AGG 0.526039 8_1:-65488660 Msa1207730:five_prime_UTR
GTCGCATGGAATAGGAAAGA+AGG 0.540132 8_1:-65485587 Msa1207730:CDS
GGGATCTATAATATGTCGCA+TGG 0.571320 8_1:-65485601 Msa1207730:CDS
ACTATTTCTGATGGAGTAGG+TGG 0.576951 8_1:-65485555 Msa1207730:three_prime_UTR
GTAAACATACTCACTTGAAA+GGG 0.576988 8_1:-65485808 Msa1207730:CDS
AATGACCTGACTATTTCTGA+TGG 0.578490 8_1:-65485564 Msa1207730:exon
ATCATTTGGCGAAAACTCAA+GGG 0.591721 8_1:-65488745 Msa1207730:five_prime_UTR
ACAGACGTAATCTTATCATA+GGG 0.596059 8_1:+65485785 None:intergenic
CACATCACACTTTCGCGCAT+AGG 0.596502 8_1:-65488663 Msa1207730:five_prime_UTR
CTGACTATTTCTGATGGAGT+AGG 0.604385 8_1:-65485558 Msa1207730:three_prime_UTR
ATGCATTTGTTCAGGGACGA+GGG 0.613696 8_1:-65485621 Msa1207730:intron
GCGCATAGGAGGGAATTCTA+CGG 0.618871 8_1:-65488649 Msa1207730:five_prime_UTR
GAAGCTGCAGTCAAAGCAAG+TGG 0.624309 8_1:+65485755 None:intergenic
TTCTCAATAAGCTTCTCTCG+TGG 0.647709 8_1:+65485854 None:intergenic
GTGTTTGTGAGAGAAAACTC+TGG 0.701023 8_1:+65488683 None:intergenic
AAAATGTGTTGGGAGAAGAG+CGG 0.763658 8_1:-65488776 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATTTATAAATTTGTATT+TGG + chr8_1:65486122-65486141 None:intergenic 10.0%
!!! TTTTGTTTTGAATATATTTG+AGG - chr8_1:65486267-65486286 Msa1207730:intron 15.0%
!!! TAAAATTTTGTAAAAGTTAC+TGG - chr8_1:65486389-65486408 Msa1207730:intron 15.0%
!!! ACAATATTTTGTACTAAATA+GGG + chr8_1:65486690-65486709 None:intergenic 15.0%
!! AGTATGTATTAATTTACATT+AGG + chr8_1:65488093-65488112 None:intergenic 15.0%
!!! TGATTTCGAATTTTGTAAAA+TGG - chr8_1:65485930-65485949 Msa1207730:intron 20.0%
!!! TAAATTATCTAGTTTTCGTA+TGG - chr8_1:65485955-65485974 Msa1207730:intron 20.0%
!!! ATATTAAATTTGAGGCAAAA+TGG - chr8_1:65486164-65486183 Msa1207730:intron 20.0%
!!! AAATTTTAAACATGTTGTTG+AGG + chr8_1:65486377-65486396 None:intergenic 20.0%
!! TCAATAAAAATGCAAGTAAT+TGG + chr8_1:65486498-65486517 None:intergenic 20.0%
!!! TTACTTGCATTTTTATTGAA+TGG - chr8_1:65486499-65486518 Msa1207730:intron 20.0%
!!! GACAATATTTTGTACTAAAT+AGG + chr8_1:65486691-65486710 None:intergenic 20.0%
!! TACAAAATATTGTCAAATAG+CGG - chr8_1:65486697-65486716 Msa1207730:intron 20.0%
!! ACATCATTCCTTAATTAATA+AGG + chr8_1:65486866-65486885 None:intergenic 20.0%
!!! TATAGTTTTCTTTGTAGTTT+CGG - chr8_1:65486991-65487010 Msa1207730:intron 20.0%
!!! TTTTCATTCTATGGATTTAT+AGG - chr8_1:65487153-65487172 Msa1207730:intron 20.0%
!! TTTCATTCTATGGATTTATA+GGG - chr8_1:65487154-65487173 Msa1207730:intron 20.0%
!!! TTGTACTAATAGTTATTTTG+TGG - chr8_1:65487432-65487451 Msa1207730:intron 20.0%
!! TTAATACATACTACTTAGTA+AGG - chr8_1:65488101-65488120 Msa1207730:intron 20.0%
!! TAATACATACTACTTAGTAA+GGG - chr8_1:65488102-65488121 Msa1207730:intron 20.0%
!! GAAAAATTAAAACAAAAGGA+TGG + chr8_1:65488214-65488233 None:intergenic 20.0%
!! TGTGGAAAAATTAAAACAAA+AGG + chr8_1:65488218-65488237 None:intergenic 20.0%
!!! TGTTTTAATTTTTCCACATT+TGG - chr8_1:65488220-65488239 Msa1207730:intron 20.0%
!! AAAAAACCAAGATAAAATGA+TGG + chr8_1:65488263-65488282 None:intergenic 20.0%
!! TGAGTTTTTGCGAATATTAT+TGG - chr8_1:65485793-65485812 Msa1207730:CDS 25.0%
! TATAAAAAAACCCTAAATCG+AGG + chr8_1:65485883-65485902 None:intergenic 25.0%
! TAGAATATGATATAGCTGAA+AGG - chr8_1:65485990-65486009 Msa1207730:intron 25.0%
! AGATCCACATATTAAATTTG+AGG - chr8_1:65486156-65486175 Msa1207730:intron 25.0%
! TTTGCCTCAAATTTAATATG+TGG + chr8_1:65486163-65486182 None:intergenic 25.0%
!!! CTTTACTTTTATTAGTAGCA+TGG - chr8_1:65486212-65486231 Msa1207730:intron 25.0%
! GGAAACTCTAAATAAATTTG+AGG + chr8_1:65486356-65486375 None:intergenic 25.0%
!! ATATTTTGTACTAAATAGGG+TGG + chr8_1:65486687-65486706 None:intergenic 25.0%
! ATTGCGTTCCTTATTAATTA+AGG - chr8_1:65486855-65486874 Msa1207730:intron 25.0%
!! ATAGTTTTCTTTGTAGTTTC+GGG - chr8_1:65486992-65487011 Msa1207730:intron 25.0%
!! TTTTGCATACATTTTTCACA+TGG - chr8_1:65487276-65487295 Msa1207730:intron 25.0%
! ACAAAATATTTAATCCACAC+GGG + chr8_1:65487348-65487367 None:intergenic 25.0%
! CACAAAATATTTAATCCACA+CGG + chr8_1:65487349-65487368 None:intergenic 25.0%
! ATCTCAAAATCAAAGTTTAG+AGG - chr8_1:65487546-65487565 Msa1207730:intron 25.0%
! TCTCAAAATCAAAGTTTAGA+GGG - chr8_1:65487547-65487566 Msa1207730:intron 25.0%
! GACTCAAACAAATTACATAA+AGG - chr8_1:65487646-65487665 Msa1207730:intron 25.0%
! AAACAAATTACATAAAGGCA+AGG - chr8_1:65487651-65487670 Msa1207730:intron 25.0%
!! ACTGAACTATTTTCATGTTT+TGG - chr8_1:65487761-65487780 Msa1207730:intron 25.0%
!!! TGTTTTGGTATTATTGAGTT+TGG - chr8_1:65487776-65487795 Msa1207730:intron 25.0%
! TAGTCATCTAATTCTCTTAT+AGG + chr8_1:65487873-65487892 None:intergenic 25.0%
! CTTAGAAATATCTGAATTGT+AGG + chr8_1:65487967-65487986 None:intergenic 25.0%
! TTTAGTATGAAAATAATGCG+TGG - chr8_1:65488177-65488196 Msa1207730:intron 25.0%
!!! TTTATCTTGGTTTTTTGAGA+TGG - chr8_1:65488267-65488286 Msa1207730:intron 25.0%
! AAACATTGCATAAAATGAAG+TGG + chr8_1:65488345-65488364 None:intergenic 25.0%
! AGCATTTATGAGATAATTGT+TGG - chr8_1:65488402-65488421 Msa1207730:intron 25.0%
! ATATGGCTATAAACAAAAAG+TGG + chr8_1:65488661-65488680 None:intergenic 25.0%
!! AAGTATTGTTTGTAAGGATA+TGG + chr8_1:65488678-65488697 None:intergenic 25.0%
!!! TGCATAAAGTATTGTTTGTA+AGG + chr8_1:65488684-65488703 None:intergenic 25.0%
! AATACTTTATGCATTTGTTC+AGG - chr8_1:65488691-65488710 Msa1207730:five_prime_UTR 25.0%
! ATACTTTATGCATTTGTTCA+GGG - chr8_1:65488692-65488711 Msa1207730:five_prime_UTR 25.0%
CTATACTTTCACATTCAATC+AGG - chr8_1:65485710-65485729 Msa1207730:intron 30.0%
! TTGTTTGAAATCCTCGATTT+AGG - chr8_1:65485869-65485888 Msa1207730:CDS 30.0%
! TGTTTGAAATCCTCGATTTA+GGG - chr8_1:65485870-65485889 Msa1207730:CDS 30.0%
!!! TATCTAGTTTTCGTATGGAT+CGG - chr8_1:65485960-65485979 Msa1207730:intron 30.0%
!! TGTGATGATTTTGATCGAAT+TGG - chr8_1:65486033-65486052 Msa1207730:intron 30.0%
!! GTGATGATTTTGATCGAATT+GGG - chr8_1:65486034-65486053 Msa1207730:intron 30.0%
AAAATGGAGTTCATTTGGTT+TGG - chr8_1:65486180-65486199 Msa1207730:intron 30.0%
! TTACAAAGCAGTTTTTGTCA+CGG - chr8_1:65486466-65486485 Msa1207730:intron 30.0%
! TTTATTGAATGGAAAGTGCA+TGG - chr8_1:65486510-65486529 Msa1207730:intron 30.0%
ATAATTGTACAAGGAGGATA+AGG + chr8_1:65486542-65486561 None:intergenic 30.0%
CATGATATAATTGTACAAGG+AGG + chr8_1:65486548-65486567 None:intergenic 30.0%
CTCCTTGTACAATTATATCA+TGG - chr8_1:65486546-65486565 Msa1207730:intron 30.0%
AGCCATGATATAATTGTACA+AGG + chr8_1:65486551-65486570 None:intergenic 30.0%
AGTCGAAAACTAGCAAATTA+GGG + chr8_1:65486584-65486603 None:intergenic 30.0%
TATTGTTGCGCTATCATTAT+AGG - chr8_1:65486623-65486642 Msa1207730:intron 30.0%
ATTGTTGCGCTATCATTATA+GGG - chr8_1:65486624-65486643 Msa1207730:intron 30.0%
ATATCTCTGTACAATCAAGA+GGG + chr8_1:65486896-65486915 None:intergenic 30.0%
TATATCTCTGTACAATCAAG+AGG + chr8_1:65486897-65486916 None:intergenic 30.0%
CTTGATTGTACAGAGATATA+AGG - chr8_1:65486897-65486916 Msa1207730:intron 30.0%
!!! AGAATAGTTTGCTTTGGTTT+TGG - chr8_1:65487202-65487221 Msa1207730:intron 30.0%
!!! TAGTGCTTAGTTTTGGAAAT+TGG - chr8_1:65487245-65487264 Msa1207730:intron 30.0%
!!! AGTGCTTAGTTTTGGAAATT+GGG - chr8_1:65487246-65487265 Msa1207730:intron 30.0%
GAAAAATGTATGCAAAACCT+TGG + chr8_1:65487273-65487292 None:intergenic 30.0%
CAAAATATTTAATCCACACG+GGG + chr8_1:65487347-65487366 None:intergenic 30.0%
!! CGTGTGGATTAAATATTTTG+TGG - chr8_1:65487347-65487366 Msa1207730:intron 30.0%
!! GTGGATTAAATATTTTGTGG+CGG - chr8_1:65487350-65487369 Msa1207730:intron 30.0%
!! CTAATAGTTATTTTGTGGCA+CGG - chr8_1:65487437-65487456 Msa1207730:intron 30.0%
TCTTTATACAGTTGTTCGTT+AGG + chr8_1:65487703-65487722 None:intergenic 30.0%
ATACATAATGGCCACAATTT+AGG - chr8_1:65487839-65487858 Msa1207730:intron 30.0%
TACATAATGGCCACAATTTA+GGG - chr8_1:65487840-65487859 Msa1207730:intron 30.0%
TTGTCTTTCTATAAAAGCTC+AGG + chr8_1:65487996-65488015 None:intergenic 30.0%
!!! TTTTTTGAGATGGAGAGAAA+AGG - chr8_1:65488277-65488296 Msa1207730:intron 30.0%
GTAAACATACTCACTTGAAA+GGG - chr8_1:65488512-65488531 Msa1207730:intron 30.0%
ACAGACGTAATCTTATCATA+GGG + chr8_1:65488538-65488557 None:intergenic 30.0%
AACAGACGTAATCTTATCAT+AGG + chr8_1:65488539-65488558 None:intergenic 30.0%
TATAATATGTCGCATGGAAT+AGG - chr8_1:65488725-65488744 Msa1207730:five_prime_UTR 30.0%
ATCATTTGGCGAAAACTCAA+GGG - chr8_1:65485575-65485594 Msa1207730:exon 35.0%
!! ATGATTTTGATCGAATTGGG+TGG - chr8_1:65486037-65486056 Msa1207730:intron 35.0%
!! TGATTTTGATCGAATTGGGT+GGG - chr8_1:65486038-65486057 Msa1207730:intron 35.0%
! TACAAAGCAGTTTTTGTCAC+GGG - chr8_1:65486467-65486486 Msa1207730:intron 35.0%
GTCGAAAACTAGCAAATTAG+GGG + chr8_1:65486583-65486602 None:intergenic 35.0%
CAGTCGAAAACTAGCAAATT+AGG + chr8_1:65486585-65486604 None:intergenic 35.0%
!!! CTAATTTGCTAGTTTTCGAC+TGG - chr8_1:65486583-65486602 Msa1207730:intron 35.0%
ACGCAATGAACTATACGAAA+GGG + chr8_1:65486842-65486861 None:intergenic 35.0%
AACGCAATGAACTATACGAA+AGG + chr8_1:65486843-65486862 None:intergenic 35.0%
GTACAGAGATATAAGGAACT+TGG - chr8_1:65486904-65486923 Msa1207730:intron 35.0%
! TTCCTAAGAGTGCAAAGAAA+CGG + chr8_1:65486946-65486965 None:intergenic 35.0%
CTAAACAGAGGAAAGTTGTA+GGG + chr8_1:65487098-65487117 None:intergenic 35.0%
TCTGCATAATCATGTAGAAC+TGG - chr8_1:65487128-65487147 Msa1207730:intron 35.0%
! GAACTGGTGTTTTCATTCTA+TGG - chr8_1:65487144-65487163 Msa1207730:intron 35.0%
!! TGGATTTATAGGGTTGATAG+CGG - chr8_1:65487164-65487183 Msa1207730:intron 35.0%
!! GCAGAAAGAATAGTTTGCTT+TGG - chr8_1:65487196-65487215 Msa1207730:intron 35.0%
! AATGCGATAGTGCTTAGTTT+TGG - chr8_1:65487238-65487257 Msa1207730:intron 35.0%
!! GTCTTTGACTTGATAGTCTT+AGG - chr8_1:65487484-65487503 Msa1207730:intron 35.0%
AATCAAAGTTTAGAGGGAAG+TGG - chr8_1:65487553-65487572 Msa1207730:intron 35.0%
ATCAAAGTTTAGAGGGAAGT+GGG - chr8_1:65487554-65487573 Msa1207730:intron 35.0%
GTATTATTGAGTTTGGACAG+AGG - chr8_1:65487783-65487802 Msa1207730:intron 35.0%
CCATTATGTATAAACCTCTG+TGG + chr8_1:65487830-65487849 None:intergenic 35.0%
CCACAGAGGTTTATACATAA+TGG - chr8_1:65487827-65487846 Msa1207730:intron 35.0%
! ATGTGTTAGCTTACTGAGTT+TGG - chr8_1:65487907-65487926 Msa1207730:intron 35.0%
!!! TTGTCTGCAATTTTGGTTGA+GGG - chr8_1:65487935-65487954 Msa1207730:intron 35.0%
ATAGAAAGACAAGTCCTACA+TGG - chr8_1:65488004-65488023 Msa1207730:intron 35.0%
TAGAAAGACAAGTCCTACAT+GGG - chr8_1:65488005-65488024 Msa1207730:intron 35.0%
CATACAGACAATGCACAAAT+AGG + chr8_1:65488134-65488153 None:intergenic 35.0%
! GGCTTACCATCATTTTATCT+TGG - chr8_1:65488254-65488273 Msa1207730:intron 35.0%
! TTTCCTCCTTTTACATAGCT+AGG - chr8_1:65488376-65488395 Msa1207730:intron 35.0%
TTTCCTAGCTATGTAAAAGG+AGG + chr8_1:65488382-65488401 None:intergenic 35.0%
! GCTTTTCCTAGCTATGTAAA+AGG + chr8_1:65488385-65488404 None:intergenic 35.0%
GAGTATGTTTACGCAAATTC+TGG + chr8_1:65488504-65488523 None:intergenic 35.0%
CGTAAACATACTCACTTGAA+AGG - chr8_1:65488511-65488530 Msa1207730:intron 35.0%
!! AATGACCTGACTATTTCTGA+TGG - chr8_1:65488756-65488775 Msa1207730:five_prime_UTR 35.0%
GAGCGGAATTCTTGATCATT+TGG - chr8_1:65485561-65485580 Msa1207730:three_prime_UTR 40.0%
GATCATTTGGCGAAAACTCA+AGG - chr8_1:65485574-65485593 Msa1207730:exon 40.0%
CGAAAACTCAAGGGTAGAAT+GGG - chr8_1:65485584-65485603 Msa1207730:CDS 40.0%
GTGTTTGTGAGAGAAAACTC+TGG + chr8_1:65485640-65485659 None:intergenic 40.0%
!!! TTCACGTTGCTTTTAGATCC+AGG - chr8_1:65485756-65485775 Msa1207730:CDS 40.0%
!!! TCACGTTGCTTTTAGATCCA+GGG - chr8_1:65485757-65485776 Msa1207730:CDS 40.0%
!!! CTCATTTTTTTCTGAAGCCC+TGG + chr8_1:65485777-65485796 None:intergenic 40.0%
GAGGCAAAATGGAGTTCATT+TGG - chr8_1:65486175-65486194 Msa1207730:intron 40.0%
AACTAGCAAATTAGGGGAGA+GGG + chr8_1:65486577-65486596 None:intergenic 40.0%
AAACTAGCAAATTAGGGGAG+AGG + chr8_1:65486578-65486597 None:intergenic 40.0%
! TTGTCAAATAGCGGAGTTAG+CGG - chr8_1:65486706-65486725 Msa1207730:intron 40.0%
CTGCACAGCAAAAGAGTTAT+AGG + chr8_1:65486740-65486759 None:intergenic 40.0%
TTTGGACGACTTGATTGGAT+TGG - chr8_1:65486811-65486830 Msa1207730:intron 40.0%
TACCGTTTCTTTGCACTCTT+AGG - chr8_1:65486941-65486960 Msa1207730:intron 40.0%
TGGAATCAAGTGGTATGAAC+TGG + chr8_1:65487068-65487087 None:intergenic 40.0%
GAAAGTTGTAGGGAGAATCA+TGG + chr8_1:65487088-65487107 None:intergenic 40.0%
CCTAAACAGAGGAAAGTTGT+AGG + chr8_1:65487099-65487118 None:intergenic 40.0%
CCTACAACTTTCCTCTGTTT+AGG - chr8_1:65487096-65487115 Msa1207730:intron 40.0%
!! GGATTTATAGGGTTGATAGC+GGG - chr8_1:65487165-65487184 Msa1207730:intron 40.0%
!!! AGTTTTGGAAATTGGGACCA+AGG - chr8_1:65487253-65487272 Msa1207730:intron 40.0%
AGGTTATGTCAGTCATTCCT+TGG - chr8_1:65487504-65487523 Msa1207730:intron 40.0%
! AACCTCTGTGGAACCATTTT+CGG + chr8_1:65487818-65487837 None:intergenic 40.0%
AGGTCTAGATCCCTAAATTG+TGG + chr8_1:65487853-65487872 None:intergenic 40.0%
! GGTAGAGTTGTCTGCAATTT+TGG - chr8_1:65487928-65487947 Msa1207730:intron 40.0%
!!! GTTGTCTGCAATTTTGGTTG+AGG - chr8_1:65487934-65487953 Msa1207730:intron 40.0%
GAAAAAACTGATGCCCATGT+AGG + chr8_1:65488021-65488040 None:intergenic 40.0%
CCTTGAACTAATGCCAAATG+TGG + chr8_1:65488236-65488255 None:intergenic 40.0%
CCACATTTGGCATTAGTTCA+AGG - chr8_1:65488233-65488252 Msa1207730:intron 40.0%
AGATGGAGAGAAAAGGAAAG+AGG - chr8_1:65488284-65488303 Msa1207730:intron 40.0%
GATGGAGAGAAAAGGAAAGA+GGG - chr8_1:65488285-65488304 Msa1207730:intron 40.0%
ATGGAGAGAAAAGGAAAGAG+GGG - chr8_1:65488286-65488305 Msa1207730:intron 40.0%
TTCTCAATAAGCTTCTCTCG+TGG + chr8_1:65488469-65488488 None:intergenic 40.0%
GGGATCTATAATATGTCGCA+TGG - chr8_1:65488719-65488738 Msa1207730:five_prime_UTR 40.0%
CTACTCCATCAGAAATAGTC+AGG + chr8_1:65488764-65488783 None:intergenic 40.0%
!! CTGACTATTTCTGATGGAGT+AGG - chr8_1:65488762-65488781 Msa1207730:five_prime_UTR 40.0%
!! ACTATTTCTGATGGAGTAGG+TGG - chr8_1:65488765-65488784 Msa1207730:five_prime_UTR 40.0%
GCGAAAACTCAAGGGTAGAA+TGG - chr8_1:65485583-65485602 Msa1207730:CDS 45.0%
CAATCAGGTGCGTTCTTTCA+TGG - chr8_1:65485725-65485744 Msa1207730:intron 45.0%
GCTGAAAGGTTGCAAAGTTC+TGG - chr8_1:65486004-65486023 Msa1207730:intron 45.0%
TCGAATTGGGTGGGAATGTT+TGG - chr8_1:65486047-65486066 Msa1207730:intron 45.0%
CGAATTGGGTGGGAATGTTT+GGG - chr8_1:65486048-65486067 Msa1207730:intron 45.0%
AGGGTGGTATTGCAGAACAA+CGG + chr8_1:65486671-65486690 None:intergenic 45.0%
!!! CTGGTTTTGGACGACTTGAT+TGG - chr8_1:65486806-65486825 Msa1207730:intron 45.0%
! TGTAGTTTCGGGTAAGTGAC+TGG - chr8_1:65487003-65487022 Msa1207730:intron 45.0%
GGGAGAATCATGGAATCAAG+TGG + chr8_1:65487078-65487097 None:intergenic 45.0%
GAATGTGCAAGCCTAAACAG+AGG + chr8_1:65487110-65487129 None:intergenic 45.0%
!! TTTATAGGGTTGATAGCGGG+AGG - chr8_1:65487168-65487187 Msa1207730:intron 45.0%
TAGATACCCGTGCTACAACA+CGG - chr8_1:65487309-65487328 Msa1207730:intron 45.0%
! TCATTCCTTGGTAGCTCAAG+TGG - chr8_1:65487516-65487535 Msa1207730:intron 45.0%
TGGAGAGAAAAGGAAAGAGG+GGG - chr8_1:65488287-65488306 Msa1207730:intron 45.0%
GATAATTGTTGGCCATGTGC+AGG - chr8_1:65488413-65488432 Msa1207730:intron 45.0%
TATGCATTTGTTCAGGGACG+AGG - chr8_1:65488698-65488717 Msa1207730:five_prime_UTR 45.0%
ATGCATTTGTTCAGGGACGA+GGG - chr8_1:65488699-65488718 Msa1207730:five_prime_UTR 45.0%
GTCGCATGGAATAGGAAAGA+AGG - chr8_1:65488733-65488752 Msa1207730:five_prime_UTR 45.0%
CACATCACACTTTCGCGCAT+AGG - chr8_1:65485657-65485676 Msa1207730:intron 50.0%
ATCACACTTTCGCGCATAGG+AGG - chr8_1:65485660-65485679 Msa1207730:intron 50.0%
TCACACTTTCGCGCATAGGA+GGG - chr8_1:65485661-65485680 Msa1207730:intron 50.0%
GCGCATAGGAGGGAATTCTA+CGG - chr8_1:65485671-65485690 Msa1207730:intron 50.0%
CTATCTGCGATTGACTGCAC+TGG - chr8_1:65486787-65486806 Msa1207730:intron 50.0%
!!! GCGATTGACTGCACTGGTTT+TGG - chr8_1:65486793-65486812 Msa1207730:intron 50.0%
CTGGACAAGACAGCAGACTT+TGG - chr8_1:65487022-65487041 Msa1207730:intron 50.0%
AGATACCCGTGCTACAACAC+GGG - chr8_1:65487310-65487329 Msa1207730:intron 50.0%
! GGCACGGATTAAATAACCCG+CGG - chr8_1:65487453-65487472 Msa1207730:intron 50.0%
! ACGGATTAAATAACCCGCGG+CGG - chr8_1:65487456-65487475 Msa1207730:intron 50.0%
TCAAAGACATTTACCGCCGC+GGG + chr8_1:65487472-65487491 None:intergenic 50.0%
GTCAAAGACATTTACCGCCG+CGG + chr8_1:65487473-65487492 None:intergenic 50.0%
ATGCACCACTTGAGCTACCA+AGG + chr8_1:65487524-65487543 None:intergenic 50.0%
AAGTGGGAACCACAGAGAGT+AGG - chr8_1:65487570-65487589 Msa1207730:intron 50.0%
TTCTGCAGACCTACTCTCTG+TGG + chr8_1:65487582-65487601 None:intergenic 50.0%
GTCTGCAGAAACCCTACTCA+GGG - chr8_1:65487592-65487611 Msa1207730:intron 50.0%
CATACTTCCCTCCCTGAGTA+GGG + chr8_1:65487606-65487625 None:intergenic 50.0%
TCATACTTCCCTCCCTGAGT+AGG + chr8_1:65487607-65487626 None:intergenic 50.0%
GAGGTAGTGAGAGCCGAAAA+TGG - chr8_1:65487802-65487821 Msa1207730:intron 50.0%
AGCCGAAAATGGTTCCACAG+AGG - chr8_1:65487813-65487832 Msa1207730:intron 50.0%
GGAGAGAAAAGGAAAGAGGG+GGG - chr8_1:65488288-65488307 Msa1207730:intron 50.0%
GAGAGAAAAGGAAAGAGGGG+GGG - chr8_1:65488289-65488308 Msa1207730:intron 50.0%
ATTGTTGGCCATGTGCAGGA+TGG - chr8_1:65488417-65488436 Msa1207730:intron 50.0%
GGTCTGAATGGTGCTTCTGT+TGG + chr8_1:65488448-65488467 None:intergenic 50.0%
AGCTTCTCTCGTGGTCTGAA+TGG + chr8_1:65488460-65488479 None:intergenic 50.0%
GAAGCTGCAGTCAAAGCAAG+TGG + chr8_1:65488568-65488587 None:intergenic 50.0%
GTAACTTTCGCGCACAGCAG+AGG + chr8_1:65486438-65486457 None:intergenic 55.0%
GGTCTGCAGAAACCCTACTC+AGG - chr8_1:65487591-65487610 Msa1207730:intron 55.0%
TGCAGAAACCCTACTCAGGG+AGG - chr8_1:65487595-65487614 Msa1207730:intron 55.0%
GCAGAAACCCTACTCAGGGA+GGG - chr8_1:65487596-65487615 Msa1207730:intron 55.0%
! TCAGGGAGGGAAGTATGAGC+TGG - chr8_1:65487609-65487628 Msa1207730:intron 55.0%
! TGGTTCTGCCATCCTGCACA+TGG + chr8_1:65488428-65488447 None:intergenic 55.0%
CGCTACCCGTGTTGTAGCAC+GGG + chr8_1:65487318-65487337 None:intergenic 60.0%
GCGCTACCCGTGTTGTAGCA+CGG + chr8_1:65487319-65487338 None:intergenic 60.0%
GTGCTACAACACGGGTAGCG+CGG - chr8_1:65487318-65487337 Msa1207730:intron 60.0%
! GGTAGCGCGGCTGCCCCGTG+TGG - chr8_1:65487331-65487350 Msa1207730:intron 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 65485554 65488788 65485554 ID=Msa1207730;Name=Msa1207730
chr8_1 mRNA 65485554 65488788 65485554 ID=Msa1207730-mRNA-1;Parent=Msa1207730;Name=Msa1207730-mRNA-1;_AED=0.02;_eAED=0.02;_QI=179|1|1|1|0.5|0.66|3|28|70
chr8_1 exon 65485554 65485629 65485554 ID=Msa1207730-mRNA-1:exon:21443;Parent=Msa1207730-mRNA-1
chr8_1 exon 65485742 65485907 65485742 ID=Msa1207730-mRNA-1:exon:21442;Parent=Msa1207730-mRNA-1
chr8_1 exon 65488611 65488788 65488611 ID=Msa1207730-mRNA-1:exon:21441;Parent=Msa1207730-mRNA-1
chr8_1 five_prime_UTR 65488611 65488788 65488611 ID=Msa1207730-mRNA-1:five_prime_utr;Parent=Msa1207730-mRNA-1
chr8_1 five_prime_UTR 65485907 65485907 65485907 ID=Msa1207730-mRNA-1:five_prime_utr;Parent=Msa1207730-mRNA-1
chr8_1 CDS 65485742 65485906 65485742 ID=Msa1207730-mRNA-1:cds;Parent=Msa1207730-mRNA-1
chr8_1 CDS 65485582 65485629 65485582 ID=Msa1207730-mRNA-1:cds;Parent=Msa1207730-mRNA-1
chr8_1 three_prime_UTR 65485554 65485581 65485554 ID=Msa1207730-mRNA-1:three_prime_utr;Parent=Msa1207730-mRNA-1
Gene Sequence

>Msa1207730

ATGGCAGAACCAACAGAAGCACCATTCAGACCACGAGAGAAGCTTATTGAGAAGCAAAAATACTTCCAGAATTTGCGTAAACATACTCACTTGAAAGGGCCCTATGATAAGATTACGTCTGTTGCAATACCACTTGCTTTGACTGCAGCTTCACTTTTTATGATTGGACGAGGGATCTATAATATGTCGCATGGAATAGGAAAGAAGGAATGA

Protein sequence

>Msa1207730

MAEPTEAPFRPREKLIEKQKYFQNLRKHTHLKGPYDKITSVAIPLALTAASLFMIGRGIYNMSHGIGKKE*