AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0072810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072810 MtrunA17_Chr1g0156911 96.552 116 4 0 1 116 20 135 2.62e-77 232
Msa0072810 MtrunA17_Chr1g0156901 83.333 114 19 0 3 116 35 148 1.69e-66 204
Msa0072810 MtrunA17_Chr1g0156891 76.522 115 26 1 3 116 28 142 3.49e-57 181
Msa0072810 MtrunA17_Chr1g0156921 76.316 114 27 0 3 116 27 140 3.78e-56 178
Msa0072810 MtrunA17_Chr3g0142921 79.439 107 21 1 6 111 24 130 1.56e-55 176
Msa0072810 MtrunA17_Chr3g0142941 72.414 116 31 1 3 118 32 146 2.27e-54 173
Msa0072810 MtrunA17_Chr1g0156931 64.912 114 40 0 3 116 26 139 2.74e-51 165
Msa0072810 MtrunA17_Chr8g0371491 66.667 105 35 0 8 112 26 130 1.96e-46 152
Msa0072810 MtrunA17_Chr5g0405821 65.094 106 35 2 8 111 33 138 6.09e-40 136
Msa0072810 MtrunA17_Chr5g0405831 59.091 110 44 1 8 116 33 142 1.54e-39 135
Msa0072810 MtrunA17_Chr8g0371481 63.000 100 37 0 13 112 36 135 9.71e-39 133
Msa0072810 MtrunA17_Chr8g0371471 61.000 100 39 0 13 112 36 135 4.07e-37 129
Msa0072810 MtrunA17_Chr5g0438641 57.000 100 43 0 13 112 27 126 2.01e-34 121
Msa0072810 MtrunA17_Chr1g0157001 55.208 96 43 0 23 118 41 136 1.37e-33 119
Msa0072810 MtrunA17_Chr3g0120861 55.000 100 45 0 13 112 33 132 2.58e-32 116
Msa0072810 MtrunA17_Chr5g0438621 56.250 96 42 0 17 112 29 124 7.88e-32 114
Msa0072810 MtrunA17_Chr5g0438631 53.636 110 50 1 4 112 13 122 1.27e-31 114
Msa0072810 MtrunA17_Chr4g0046151 58.696 92 38 0 18 109 36 127 2.89e-31 113
Msa0072810 MtrunA17_Chr3g0105401 54.167 96 44 0 17 112 27 122 1.62e-29 108
Msa0072810 MtrunA17_Chr2g0283191 55.340 103 43 2 17 116 37 139 2.24e-29 108
Msa0072810 MtrunA17_Chr2g0320671 50.485 103 51 0 17 119 29 131 6.15e-29 107
Msa0072810 MtrunA17_Chr4g0027561 52.128 94 45 0 17 110 29 122 1.01e-27 99.4
Msa0072810 MtrunA17_Chr5g0432101 50.000 100 50 0 10 109 25 124 2.38e-27 103
Msa0072810 MtrunA17_Chr4g0027521 51.579 95 46 0 17 111 26 120 6.99e-27 101
Msa0072810 MtrunA17_Chr6g0469511 50.526 95 47 0 17 111 29 123 8.46e-27 96.7
Msa0072810 MtrunA17_Chr7g0229591 51.064 94 46 0 17 110 29 122 9.43e-26 95.9
Msa0072810 MtrunA17_Chr8g0341001 45.000 100 55 0 17 116 31 130 2.25e-25 97.8
Msa0072810 MtrunA17_Chr2g0330781 50.000 90 45 0 17 106 30 119 4.09e-25 97.1
Msa0072810 MtrunA17_Chr5g0437421 52.564 78 37 0 17 94 31 108 2.43e-24 95.1
Msa0072810 MtrunA17_Chr2g0284941 50.000 88 41 2 17 104 32 116 2.15e-23 92.4
Msa0072810 MtrunA17_Chr5g0420811 45.545 101 53 2 17 116 32 131 5.03e-23 91.3
Msa0072810 MtrunA17_Chr2g0284951 46.000 100 46 3 17 116 32 123 9.47e-23 90.9
Msa0072810 MtrunA17_Chr2g0321991 49.438 89 43 2 17 104 32 119 2.16e-22 85.1
Msa0072810 MtrunA17_Chr2g0284991 46.809 94 47 2 17 110 32 122 2.45e-22 89.7
Msa0072810 MtrunA17_Chr8g0380031 48.864 88 42 2 17 104 83 167 2.80e-22 90.1
Msa0072810 MtrunA17_Chr7g0275021 54.023 87 39 1 18 104 34 119 4.51e-22 89.0
Msa0072810 MtrunA17_Chr2g0284921 45.918 98 51 1 17 114 33 128 5.79e-22 88.6
Msa0072810 MtrunA17_Chr1g0189921 51.724 87 41 1 18 104 31 116 1.26e-21 84.0
Msa0072810 MtrunA17_Chr2g0285061 47.727 88 43 2 17 104 31 115 3.56e-21 86.7
Msa0072810 MtrunA17_Chr3g0086641 45.833 96 49 2 9 104 29 121 5.17e-21 86.3
Msa0072810 MtrunA17_Chr1g0182811 45.918 98 53 0 7 104 22 119 5.76e-21 85.9
Msa0072810 MtrunA17_Chr8g0374101 46.000 100 52 1 18 115 37 136 1.04e-20 85.5
Msa0072810 MtrunA17_Chr2g0285001 45.652 92 46 3 14 104 29 117 4.71e-20 83.6
Msa0072810 MtrunA17_Chr2g0294301 43.925 107 57 2 8 114 25 128 1.79e-19 82.0
Msa0072810 MtrunA17_Chr3g0131321 48.352 91 44 2 16 104 32 121 3.06e-19 81.3
Msa0072810 MtrunA17_Chr1g0189901 52.874 87 40 1 18 104 31 116 5.22e-19 80.5
Msa0072810 MtrunA17_Chr6g0455661 45.536 112 54 4 1 112 17 121 6.15e-19 80.9
Msa0072810 MtrunA17_Chr1g0189931 52.874 87 40 1 18 104 32 117 6.55e-19 80.5
Msa0072810 MtrunA17_Chr6g0463261 83.333 42 7 0 70 111 3 44 7.08e-19 76.3
Msa0072810 MtrunA17_Chr5g0396511 44.706 85 46 1 20 104 48 131 7.59e-19 80.1
Msa0072810 MtrunA17_Chr8g0380041 44.211 95 49 2 17 111 30 120 8.95e-19 80.1
Msa0072810 MtrunA17_Chr1g0189891 52.273 88 40 2 18 104 29 115 1.52e-18 79.3
Msa0072810 MtrunA17_Chr3g0099161 47.872 94 43 2 17 104 91 184 1.86e-18 79.3
Msa0072810 MtrunA17_Chr3g0099151 46.809 94 44 2 17 104 86 179 2.15e-18 79.3
Msa0072810 MtrunA17_Chr7g0275011 50.575 87 42 1 18 104 34 119 3.09e-18 78.6
Msa0072810 MtrunA17_Chr7g0275001 50.575 87 42 1 18 104 25 110 4.14e-18 78.2
Msa0072810 MtrunA17_Chr3g0077571 48.864 88 41 3 17 104 29 112 4.14e-18 78.2
Msa0072810 MtrunA17_Chr6g0457921 48.913 92 44 3 15 104 25 115 5.39e-18 77.8
Msa0072810 MtrunA17_Chr7g0274991 47.312 93 48 1 12 104 27 118 6.62e-18 77.8
Msa0072810 MtrunA17_Chr3g0077581 41.837 98 50 3 9 104 27 119 6.65e-18 77.8
Msa0072810 MtrunA17_Chr4g0017431 48.864 88 43 2 17 104 30 115 1.82e-17 76.3
Msa0072810 MtrunA17_Chr4g0068441 42.857 105 57 2 8 112 25 126 1.96e-17 76.3
Msa0072810 MtrunA17_Chr3g0099231 50.000 96 37 4 17 104 27 119 2.31e-17 76.3
Msa0072810 MtrunA17_Chr8g0370981 45.652 92 46 2 17 104 43 134 4.34e-17 75.5
Msa0072810 MtrunA17_Chr3g0085881 44.211 95 49 3 17 111 32 122 4.37e-17 75.1
Msa0072810 MtrunA17_Chr5g0434621 47.674 86 43 2 20 104 27 111 8.14e-17 74.3
Msa0072810 MtrunA17_Chr4g0008851 49.425 87 43 1 18 104 32 117 9.93e-17 74.3
Msa0072810 MtrunA17_Chr2g0294311 43.878 98 42 3 17 104 31 125 2.10e-16 73.6
Msa0072810 MtrunA17_Chr3g0085231 48.315 89 43 3 17 104 30 116 2.19e-16 73.2
Msa0072810 MtrunA17_Chr3g0092131 45.977 87 44 3 20 104 25 110 4.31e-16 72.4
Msa0072810 MtrunA17_Chr5g0444401 46.316 95 43 3 17 104 27 120 6.36e-16 72.0
Msa0072810 MtrunA17_Chr8g0344941 47.191 89 41 4 18 104 41 125 1.06e-15 71.6
Msa0072810 MtrunA17_Chr8g0349301 42.453 106 48 4 4 104 23 120 1.40e-15 70.9
Msa0072810 MtrunA17_Chr4g0060811 44.828 87 45 3 20 104 29 114 7.21e-15 69.3
Msa0072810 MtrunA17_Chr2g0301641 45.918 98 43 4 18 111 43 134 1.35e-14 68.6
Msa0072810 MtrunA17_Chr8g0349321 47.191 89 41 4 18 104 37 121 2.02e-14 67.8
Msa0072810 MtrunA17_Chr8g0370971 40.217 92 51 1 17 104 37 128 2.31e-14 65.5
Msa0072810 MtrunA17_Chr4g0018561 54.902 51 23 0 17 67 29 79 6.95e-14 62.4
Msa0072810 MtrunA17_Chr8g0349331 45.000 100 49 4 18 115 35 130 7.98e-14 66.2
Msa0072810 MtrunA17_Chr2g0308201 58.491 53 21 1 17 69 34 85 8.93e-14 62.0
Msa0072810 MtrunA17_Chr8g0349341 48.315 89 40 4 18 104 37 121 1.98e-13 65.1
Msa0072810 MtrunA17_Chr3g0104801 42.045 88 49 2 16 103 42 127 2.44e-13 63.2
Msa0072810 MtrunA17_Chr8g0370951 45.263 95 46 3 16 104 29 123 6.16e-13 63.5
Msa0072810 MtrunA17_Chr8g0344931 41.121 107 56 5 7 111 27 128 1.44e-12 62.8
Msa0072810 MtrunA17_Chr3g0104821 42.045 88 49 2 16 103 42 127 1.62e-12 62.4
Msa0072810 MtrunA17_Chr2g0283481 38.182 110 57 4 14 119 43 145 3.34e-12 61.6
Msa0072810 MtrunA17_Chr1g0178931 41.935 93 50 4 19 110 38 127 1.39e-11 59.7
Msa0072810 MtrunA17_Chr7g0215961 40.659 91 40 2 14 104 29 105 1.85e-11 59.3
Msa0072810 MtrunA17_Chr7g0266061 46.154 91 44 5 19 108 43 129 3.17e-11 58.9
Msa0072810 MtrunA17_Chr1g0198381 45.349 86 39 3 19 104 3 80 3.83e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072810 AT1G75880.1 61.947 113 43 0 2 114 36 148 2.63e-45 150
Msa0072810 AT3G43570.1 63.810 105 38 0 8 112 20 124 5.79e-45 148
Msa0072810 AT1G75880.2 62.162 111 42 0 2 112 36 146 9.16e-45 149
Msa0072810 AT3G43550.1 63.810 105 38 0 8 112 20 124 1.05e-44 147
Msa0072810 AT5G42170.1 60.185 108 43 0 5 112 37 144 1.52e-44 148
Msa0072810 AT1G59406.1 66.000 100 34 0 13 112 25 124 4.66e-44 147
Msa0072810 AT1G59030.1 66.000 100 34 0 13 112 25 124 4.66e-44 147
Msa0072810 AT1G58725.1 66.000 100 34 0 13 112 25 124 4.66e-44 147
Msa0072810 AT1G75900.1 57.983 119 50 0 1 119 26 144 1.46e-43 145
Msa0072810 AT1G58520.3 65.000 100 35 0 13 112 25 124 2.87e-42 142
Msa0072810 AT1G58525.1 65.000 100 35 0 13 112 25 124 2.87e-42 142
Msa0072810 AT1G75890.1 56.522 115 49 1 4 117 33 147 4.28e-40 137
Msa0072810 AT3G14820.1 64.646 99 35 0 14 112 28 126 5.07e-40 136
Msa0072810 AT1G75890.2 57.658 111 46 1 4 113 33 143 2.22e-39 135
Msa0072810 AT1G75890.3 57.658 111 46 1 4 113 62 172 2.74e-39 135
Msa0072810 AT1G20132.1 64.000 100 36 0 13 112 56 155 2.27e-38 132
Msa0072810 AT1G20130.2 55.769 104 46 0 13 116 179 282 2.29e-35 127
Msa0072810 AT1G20130.1 55.769 104 46 0 13 116 199 302 2.74e-35 127
Msa0072810 AT5G63170.1 55.340 103 46 0 15 117 25 127 3.52e-34 121
Msa0072810 AT1G20120.1 51.304 115 56 0 2 116 62 176 1.95e-33 120
Msa0072810 AT1G73610.1 54.286 105 48 0 13 117 30 134 2.13e-33 119
Msa0072810 AT1G75920.2 56.000 100 44 0 13 112 24 123 3.34e-32 115
Msa0072810 AT5G45960.1 56.122 98 43 0 15 112 44 141 5.67e-32 115
Msa0072810 AT1G20135.1 53.333 105 49 0 15 119 26 130 9.53e-32 114
Msa0072810 AT2G04570.1 55.208 96 43 0 17 112 27 122 9.18e-31 112
Msa0072810 AT1G06990.1 55.208 96 43 0 16 111 35 130 2.28e-30 111
Msa0072810 AT1G75910.1 56.000 100 44 0 13 112 23 122 2.72e-29 108
Msa0072810 AT2G40250.1 50.476 105 52 0 12 116 30 134 2.93e-29 108
Msa0072810 AT1G23500.1 53.333 105 49 0 13 117 30 134 6.08e-29 107
Msa0072810 AT1G75920.1 48.696 115 44 1 13 112 19 133 2.35e-28 105
Msa0072810 AT4G26790.1 50.000 106 52 1 8 112 18 123 3.65e-28 105
Msa0072810 AT4G26790.2 50.000 106 52 1 8 112 18 123 3.65e-28 105
Msa0072810 AT2G42990.1 47.368 114 52 1 14 119 24 137 1.18e-27 103
Msa0072810 AT2G31540.1 54.167 96 43 1 16 110 33 128 1.46e-27 103
Msa0072810 AT1G58430.1 54.639 97 41 2 16 110 33 128 2.40e-27 103
Msa0072810 AT2G24560.2 52.083 96 45 1 16 110 32 127 4.15e-27 102
Msa0072810 AT2G24560.1 52.083 96 45 1 16 110 32 127 7.88e-27 102
Msa0072810 AT5G22810.1 48.000 100 52 0 17 116 33 132 1.05e-26 101
Msa0072810 AT2G30310.1 52.083 96 45 1 16 110 32 127 2.69e-26 100
Msa0072810 AT5G03810.1 48.936 94 48 0 17 110 29 122 3.10e-26 100
Msa0072810 AT3G16370.1 47.000 100 53 0 7 106 19 118 3.62e-26 100
Msa0072810 AT1G75930.1 52.000 100 47 1 13 111 24 123 4.55e-25 97.1
Msa0072810 AT2G30220.1 51.042 96 46 1 16 110 31 126 1.44e-24 95.9
Msa0072810 AT5G03820.1 48.889 90 46 0 17 106 32 121 1.79e-23 93.2
Msa0072810 AT5G03820.2 48.889 90 46 0 17 106 60 149 2.53e-23 92.8
Msa0072810 AT2G04020.1 48.485 99 49 2 15 112 40 137 1.57e-22 89.0
Msa0072810 AT2G03980.2 43.478 115 54 3 15 119 40 153 1.68e-22 90.5
Msa0072810 AT2G03980.3 43.478 115 54 3 15 119 40 153 1.68e-22 90.5
Msa0072810 AT2G03980.1 43.478 115 54 3 15 119 40 153 1.68e-22 90.5
Msa0072810 AT2G03980.4 43.478 115 54 3 15 119 40 153 1.68e-22 90.5
Msa0072810 AT3G53100.1 46.392 97 52 0 14 110 25 121 2.84e-22 89.7
Msa0072810 AT2G04020.2 48.485 99 49 2 15 112 40 137 5.75e-22 88.6
Msa0072810 AT5G08460.1 49.451 91 45 1 14 104 45 134 1.30e-21 88.2
Msa0072810 AT1G29670.2 45.455 99 50 2 6 104 88 182 2.81e-21 87.8
Msa0072810 AT5G45950.1 43.269 104 58 1 9 112 31 133 3.09e-21 87.0
Msa0072810 AT1G29670.1 45.455 99 50 2 6 104 20 114 3.32e-21 87.0
Msa0072810 AT4G16230.1 46.392 97 50 1 16 112 28 122 4.50e-21 85.1
Msa0072810 AT1G75920.4 57.143 70 30 0 43 112 26 95 7.70e-21 85.5
Msa0072810 AT2G23540.1 45.000 100 53 1 18 115 48 147 7.95e-21 86.3
Msa0072810 AT3G50400.1 48.913 92 45 1 15 104 31 122 8.13e-21 85.9
Msa0072810 AT2G19010.1 47.368 95 47 2 17 111 29 120 1.10e-20 85.5
Msa0072810 AT2G19010.2 47.368 95 47 2 17 111 59 150 1.44e-20 85.5
Msa0072810 AT1G29660.1 43.299 97 51 2 8 104 22 114 4.02e-20 84.0
Msa0072810 AT2G19060.1 47.368 95 47 2 17 111 29 120 1.97e-19 82.0
Msa0072810 AT4G18970.2 46.591 88 44 2 17 104 27 111 2.83e-19 82.0
Msa0072810 AT4G10950.2 44.681 94 50 2 12 104 64 156 3.14e-19 82.0
Msa0072810 AT4G18970.1 46.591 88 44 2 17 104 27 111 4.92e-19 80.9
Msa0072810 AT5G41890.1 47.126 87 44 1 20 104 33 119 1.05e-18 80.1
Msa0072810 AT5G18430.1 51.724 87 42 0 18 104 28 114 1.24e-18 80.1
Msa0072810 AT4G28780.1 50.575 87 42 1 18 104 31 116 1.24e-18 80.1
Msa0072810 AT2G19050.2 44.211 95 50 2 17 111 30 121 1.77e-18 78.6
Msa0072810 AT5G33370.2 48.421 95 48 1 10 104 22 115 1.92e-18 79.3
Msa0072810 AT2G19050.1 44.211 95 50 2 17 111 30 121 2.77e-18 79.0
Msa0072810 AT5G33370.1 48.421 95 48 1 10 104 22 115 4.78e-18 78.2
Msa0072810 AT1G71691.3 48.387 93 44 3 17 109 54 142 5.58e-18 77.8
Msa0072810 AT1G33811.1 41.758 91 50 2 14 104 30 117 6.73e-18 77.8
Msa0072810 AT1G71691.2 48.387 93 44 3 17 109 54 142 9.23e-18 77.8
Msa0072810 AT5G45670.1 44.318 88 46 2 17 104 28 112 1.30e-17 77.0
Msa0072810 AT3G04290.1 46.316 95 50 1 10 104 21 114 1.51e-17 77.0
Msa0072810 AT1G53920.1 44.231 104 53 4 3 104 33 133 2.80e-17 76.3
Msa0072810 AT5G55050.1 47.423 97 45 2 14 104 35 131 3.04e-17 76.3
Msa0072810 AT4G16220.1 45.263 95 48 2 16 110 28 118 7.77e-17 73.9
Msa0072810 AT4G10950.1 44.681 94 46 3 12 104 64 152 9.00e-17 75.1
Msa0072810 AT5G15720.2 47.727 88 43 2 17 104 29 113 9.46e-17 74.3
Msa0072810 AT5G37690.1 42.105 95 53 2 11 104 20 113 1.42e-16 74.3
Msa0072810 AT5G15720.1 47.727 88 43 2 17 104 29 113 1.43e-16 74.3
Msa0072810 AT1G71120.1 44.792 96 46 4 14 104 27 120 3.28e-16 73.2
Msa0072810 AT1G74460.1 43.678 87 46 3 20 104 25 110 8.66e-16 72.0
Msa0072810 AT1G75920.3 39.000 100 30 1 13 112 24 92 6.58e-15 69.3
Msa0072810 AT1G71250.1 45.055 91 48 2 14 104 37 125 1.00e-14 69.3
Msa0072810 AT4G30140.1 42.708 96 50 3 17 111 32 123 4.28e-14 67.4
Msa0072810 AT2G27360.1 39.815 108 52 4 15 119 30 127 3.05e-12 62.0
Msa0072810 AT1G28580.1 45.055 91 43 3 16 103 35 121 5.29e-12 61.6
Msa0072810 AT5G37690.2 38.947 95 48 3 11 104 20 105 1.14e-11 60.5
Msa0072810 AT5G03610.1 43.023 86 46 3 19 104 44 126 1.50e-11 60.1
Msa0072810 AT5G14450.1 41.667 96 49 4 8 103 31 119 2.74e-11 59.3
Msa0072810 AT3G14225.2 41.935 93 42 5 18 104 37 123 3.72e-11 58.9
Msa0072810 AT3G14225.1 41.935 93 42 5 18 104 37 123 3.73e-11 58.9
Msa0072810 AT3G09930.2 39.583 96 51 3 9 104 34 122 9.08e-11 57.8
Msa0072810 AT3G09930.1 39.583 96 51 3 9 104 34 122 9.08e-11 57.8

Find 88 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATATCTTCCAGCATATT+TGG 0.150743 1_2:-45885426 Msa0072810:CDS
ACTTGGAAAATTCTGCTTAA+AGG 0.193594 1_2:+45884116 None:intergenic
ATTCTTTGAATAATTCTATC+TGG 0.217150 1_2:+45885077 None:intergenic
AAGTAGCAGGATTGTTTATA+TGG 0.252807 1_2:-45884097 Msa0072810:three_prime_UTR
TTTCCAGCAGTGTTTGTATT+TGG 0.284628 1_2:-45885713 Msa0072810:CDS
ACGACTCGGATTATGTGTTT+TGG 0.299162 1_2:-45882923 Msa0072810:three_prime_UTR
TCCTTTCATTTGTATATAGA+AGG 0.301656 1_2:+45884303 None:intergenic
TTACTATCAGTTGAAGAATT+AGG 0.313281 1_2:-45885455 Msa0072810:intron
AGCTGCCTGCTTATTATATA+AGG 0.316492 1_2:+45885114 None:intergenic
ACCGGTGTTAACTTTGCTTC+CGG 0.332637 1_2:-45885374 Msa0072810:CDS
AATTCACTAGGCTGAAGATT+TGG 0.343354 1_2:+45885401 None:intergenic
TGCGAAGTATAAAATCTTAA+CGG 0.349964 1_2:-45884387 Msa0072810:three_prime_UTR
GGAGATTCAATCATGGATAC+TGG 0.365221 1_2:-45885692 Msa0072810:CDS
TTACAACGATATCAAGTATA+GGG 0.370204 1_2:+45884064 None:intergenic
AAAGCATGGGAGAAAACATT+TGG 0.373096 1_2:-45884455 Msa0072810:three_prime_UTR
CAGCCTAGTGAATTGGTTAC+CGG 0.373888 1_2:-45885392 Msa0072810:CDS
ACATCATATAACAGTACATT+TGG 0.377653 1_2:+45882685 None:intergenic
AAATGTATTTCTGTAGACTT+AGG 0.380055 1_2:+45882856 None:intergenic
TATAAGCTGAGTCTACTAAA+AGG 0.388730 1_2:+45884897 None:intergenic
CCTTGAAAATCTTTGCCATA+TGG 0.389112 1_2:+45885626 None:intergenic
AAATCTTCAGCCTAGTGAAT+TGG 0.390537 1_2:-45885399 Msa0072810:CDS
CTAGAAAGAAAGAAACAAAA+AGG 0.402491 1_2:-45885185 Msa0072810:three_prime_UTR
CGCCTGTGCCACAGCACCCT+CGG 0.404574 1_2:+45882994 None:intergenic
AACTTTGCTTCCGGTGGTGC+AGG 0.405817 1_2:-45885365 Msa0072810:CDS
TAGCACAAAATAAATACTAT+TGG 0.418137 1_2:+45885000 None:intergenic
TTTACAACGATATCAAGTAT+AGG 0.431490 1_2:+45884063 None:intergenic
GTATTCAATGTACCACCAAT+TGG 0.435799 1_2:-45884249 Msa0072810:three_prime_UTR
ATATAAACAATCCTGCTACT+TGG 0.437775 1_2:+45884099 None:intergenic
AAGGTTCCAGCAGATCTTAT+AGG 0.461354 1_2:-45885572 Msa0072810:intron
TTTCAAGGAGGAATTCCAAC+TGG 0.466996 1_2:-45885611 Msa0072810:CDS
GACCGAGGGTGCTGTGGCAC+AGG 0.468131 1_2:-45882996 Msa0072810:three_prime_UTR
TCATGACGGAAAATAATTAA+CGG 0.472659 1_2:+45884774 None:intergenic
TTCTTTGAATAATTCTATCT+GGG 0.473576 1_2:+45885078 None:intergenic
CATGACGGAAAATAATTAAC+GGG 0.475032 1_2:+45884775 None:intergenic
ATCCGAGTCGTTGGCACAAG+TGG 0.479341 1_2:+45882935 None:intergenic
AATGTATTTCTGTAGACTTA+GGG 0.480144 1_2:+45882857 None:intergenic
TGAAACGGTACGCACCCAAT+TGG 0.481254 1_2:+45884234 None:intergenic
ACTGCTGGAAACGAAGCATT+TGG 0.481683 1_2:+45885725 None:intergenic
CAGTGCAAATTCCCTCCATA+TGG 0.481728 1_2:-45885641 Msa0072810:CDS
ATACTGGAAATAACAACAAC+AGG 0.490434 1_2:-45885676 Msa0072810:CDS
ATAGTACCTATAAGATCTGC+TGG 0.491106 1_2:+45885566 None:intergenic
TATTCAATGTACCACCAATT+GGG 0.499652 1_2:-45884248 Msa0072810:three_prime_UTR
AGTACATTTGGATGGAATCA+AGG 0.501192 1_2:+45882697 None:intergenic
TGTATTTGGAGATTCAATCA+TGG 0.510260 1_2:-45885699 Msa0072810:CDS
TCTCCAAATACAAACACTGC+TGG 0.510616 1_2:+45885710 None:intergenic
CAACTAGGTGCAAGGAGGAT+AGG 0.513503 1_2:-45884273 Msa0072810:three_prime_UTR
TTAGAGATTGATTTGATCGA+TGG 0.513564 1_2:+45885292 None:intergenic
CCAGCCACTGTTCTCTGAAA+CGG 0.517712 1_2:+45884219 None:intergenic
TCCTTCTATATACAAATGAA+AGG 0.519835 1_2:-45884304 Msa0072810:three_prime_UTR
CTCAGCTTATAATTTCTACA+AGG 0.522865 1_2:-45884885 Msa0072810:three_prime_UTR
TGGCACAAGTGGGTTCCAAA+TGG 0.524285 1_2:+45882946 None:intergenic
AACGGTACGCACCCAATTGG+TGG 0.534120 1_2:+45884237 None:intergenic
CCATTGCTAAATCTTCCAGT+TGG 0.534561 1_2:+45885596 None:intergenic
AATTTGCACTGAGTTGGTGT+TGG 0.536542 1_2:+45885653 None:intergenic
AACTTGCTGAAAACTCATAG+AGG 0.536601 1_2:-45884426 Msa0072810:three_prime_UTR
TGTTTCCTTATATAATAAGC+AGG 0.538754 1_2:-45885119 Msa0072810:three_prime_UTR
TGAAAATCTTTGCCATATGG+AGG 0.540087 1_2:+45885629 None:intergenic
AGATTTGGATCCAAATATGC+TGG 0.543536 1_2:+45885416 None:intergenic
CATATAACAGTACATTTGGA+TGG 0.551598 1_2:+45882689 None:intergenic
ACCCACTTGTGCCAACGACT+CGG 0.554324 1_2:-45882937 Msa0072810:three_prime_UTR
GAATATATTGTGAAGCTGAA+AGG 0.555476 1_2:-45885058 Msa0072810:three_prime_UTR
AGGATCATATCCTGCACCAC+CGG 0.561279 1_2:+45885355 None:intergenic
TGGAAGATTTAGCAATGGAA+AGG 0.566706 1_2:-45885591 Msa0072810:CDS
ACTAAAAGGTCAGAGTATGA+AGG 0.568719 1_2:+45884911 None:intergenic
GAAAATCTTTGCCATATGGA+GGG 0.573041 1_2:+45885630 None:intergenic
CCGTTTCAGAGAACAGTGGC+TGG 0.574955 1_2:-45884219 Msa0072810:three_prime_UTR
GGAGGGAATTTGCACTGAGT+TGG 0.578300 1_2:+45885647 None:intergenic
CATGAGTGCACTTAAAAGCA+TGG 0.583742 1_2:-45884469 Msa0072810:three_prime_UTR
GTTGTAGACCGAGGGTGCTG+TGG 0.590207 1_2:-45883002 Msa0072810:three_prime_UTR
GTGAAGCTGAAAGGACTAGT+TGG 0.592305 1_2:-45885049 Msa0072810:three_prime_UTR
AAATGTATCAACTAGGTGCA+AGG 0.593045 1_2:-45884281 Msa0072810:three_prime_UTR
GCTGGAAACGAAGCATTTGG+TGG 0.598602 1_2:+45885728 None:intergenic
ACATAAATCAAAAGTCATGA+CGG 0.599820 1_2:+45884760 None:intergenic
ACTTGCTGAAAACTCATAGA+GGG 0.603519 1_2:-45884425 Msa0072810:three_prime_UTR
AAACACATAATCCGAGTCGT+TGG 0.610398 1_2:+45882926 None:intergenic
GGTGTTAACTTTGCTTCCGG+TGG 0.610616 1_2:-45885371 Msa0072810:CDS
TGAAAGGAAATGTATCAACT+AGG 0.611457 1_2:-45884288 Msa0072810:three_prime_UTR
ATGAGTGCACTTAAAAGCAT+GGG 0.612472 1_2:-45884468 Msa0072810:three_prime_UTR
TCCGAGTCGTTGGCACAAGT+GGG 0.615115 1_2:+45882936 None:intergenic
GGCTTCAAAGTTGTAGACCG+AGG 0.619507 1_2:-45883011 Msa0072810:three_prime_UTR
CCAACTGGAAGATTTAGCAA+TGG 0.628801 1_2:-45885596 Msa0072810:CDS
GCTTCAAAGTTGTAGACCGA+GGG 0.636914 1_2:-45883010 Msa0072810:three_prime_UTR
ACACCGGTAACCAATTCACT+AGG 0.656294 1_2:+45885389 None:intergenic
TTTCAGAGAACAGTGGCTGG+AGG 0.665786 1_2:-45884216 Msa0072810:three_prime_UTR
ACCGGAAGCAAAGTTAACAC+CGG 0.679800 1_2:+45885373 None:intergenic
TTACAAGGATCAAACCCGTG+TGG 0.708574 1_2:+45884849 None:intergenic
TGTATCAACTAGGTGCAAGG+AGG 0.714837 1_2:-45884278 Msa0072810:three_prime_UTR
CGTACCGTTTCAGAGAACAG+TGG 0.763484 1_2:-45884223 Msa0072810:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAACATAGTAAAAATT+TGG + chr1_2:45886369-45886388 None:intergenic 10.0%
!!! TAAAAGAAATTTTTGATAAA+TGG + chr1_2:45886991-45887010 None:intergenic 10.0%
!!! ATTTTATTACTATCATCAAT+TGG + chr1_2:45884849-45884868 None:intergenic 15.0%
!! TGAAATCAAAAATATTTACA+AGG + chr1_2:45885284-45885303 None:intergenic 15.0%
!!! ATTTAGAATTACCATATTTT+TGG + chr1_2:45886081-45886100 None:intergenic 15.0%
!!! TAACAAAACATATGTATTTT+TGG - chr1_2:45886413-45886432 Msa0072810:intron 15.0%
!! GTACTTTATATTTATGTTAA+AGG - chr1_2:45886484-45886503 Msa0072810:intron 15.0%
!! TTTATATTTATGTTAAAGGT+TGG - chr1_2:45886488-45886507 Msa0072810:intron 15.0%
!!! AATTGAGTTTCTTTTATTAT+TGG - chr1_2:45886742-45886761 Msa0072810:intron 15.0%
!!! CTTTTCATAGTATTTTATAT+TGG - chr1_2:45886963-45886982 Msa0072810:intron 15.0%
!! ATGATTCAAGATTTAATATT+TGG - chr1_2:45887056-45887075 Msa0072810:intron 15.0%
!! TTAAGATGCATAAACAAATT+AGG + chr1_2:45883168-45883187 None:intergenic 20.0%
!! TCTTAATTGTTAAACAAATG+AGG - chr1_2:45883182-45883201 Msa0072810:intron 20.0%
!! CTACCTTATTATTAAAAATC+CGG + chr1_2:45883287-45883306 None:intergenic 20.0%
!!! GATTTTTAATAATAAGGTAG+TGG - chr1_2:45883287-45883306 Msa0072810:intron 20.0%
!! TAATAATATTAGCTGTTCAA+AGG - chr1_2:45883681-45883700 Msa0072810:intron 20.0%
!!! AGTAACAAATTTTTTCCTTA+CGG + chr1_2:45883823-45883842 None:intergenic 20.0%
!!! TATATAGTTTTGGTTAATAC+TGG + chr1_2:45884269-45884288 None:intergenic 20.0%
!! GTATTAACCAAAACTATATA+TGG - chr1_2:45884269-45884288 Msa0072810:three_prime_UTR 20.0%
!!! AAAAGAACCATATATAGTTT+TGG + chr1_2:45884279-45884298 None:intergenic 20.0%
!! TTCTTTGAATAATTCTATCT+GGG + chr1_2:45885040-45885059 None:intergenic 20.0%
!! ATTCTTTGAATAATTCTATC+TGG + chr1_2:45885041-45885060 None:intergenic 20.0%
!! TAGCACAAAATAAATACTAT+TGG + chr1_2:45885118-45885137 None:intergenic 20.0%
!! TTAATAAAGTGTAGAAAAAG+TGG + chr1_2:45886125-45886144 None:intergenic 20.0%
!! TGGATAATTAATTCAATTCA+CGG - chr1_2:45886177-45886196 Msa0072810:intron 20.0%
!! GTTTATCACATTTAAAAATG+TGG + chr1_2:45886295-45886314 None:intergenic 20.0%
!!! TTTTAATAACAATTACTCTC+CGG - chr1_2:45886382-45886401 Msa0072810:intron 20.0%
!!! AGATACATGTACTTTTTATT+TGG + chr1_2:45886440-45886459 None:intergenic 20.0%
!!! ATTTGCAACATAATTTTTTC+AGG + chr1_2:45886559-45886578 None:intergenic 20.0%
!!! CTTAATTCACTTTTTTTTTG+TGG - chr1_2:45886606-45886625 Msa0072810:intron 20.0%
!! TAATTCACTAGTAATACTTA+AGG - chr1_2:45886706-45886725 Msa0072810:intron 20.0%
!! AAAATAAGTGTTAGAGAATA+TGG - chr1_2:45886932-45886951 Msa0072810:intron 20.0%
!! AAAAATTATTGTCAACTTGT+AGG - chr1_2:45887083-45887102 Msa0072810:intron 20.0%
!!! TATTTTTTTATGCAACCATT+TGG - chr1_2:45887154-45887173 Msa0072810:intron 20.0%
!! AGTACTAAATTGAAAAACAA+GGG + chr1_2:45887463-45887482 None:intergenic 20.0%
! TCTTTACTATGAAAGGTTTA+TGG + chr1_2:45882709-45882728 None:intergenic 25.0%
! AATAGTGTTCATATGCAAAT+AGG - chr1_2:45882809-45882828 Msa0072810:three_prime_UTR 25.0%
! AAAATATAATGCGAGTTATG+TGG - chr1_2:45882963-45882982 Msa0072810:three_prime_UTR 25.0%
!!! TGGAGTTCAATGTATTTTAA+TGG + chr1_2:45882998-45883017 None:intergenic 25.0%
! CAACTTAGAAACATTATTAG+TGG + chr1_2:45883018-45883037 None:intergenic 25.0%
! AAAATGCAACCTACTATTAT+TGG + chr1_2:45883047-45883066 None:intergenic 25.0%
! AATTGTTAAACAAATGAGGT+AGG - chr1_2:45883186-45883205 Msa0072810:intron 25.0%
!! TGACCGGATTTTTAATAATA+AGG - chr1_2:45883281-45883300 Msa0072810:intron 25.0%
!!! TTTTAATAATAAGGTAGTGG+AGG - chr1_2:45883290-45883309 Msa0072810:intron 25.0%
! TGAATTGGTAGACAAAATTA+AGG - chr1_2:45883317-45883336 Msa0072810:intron 25.0%
!!! ACAAAATTAAGGTTTTGTCT+TGG - chr1_2:45883328-45883347 Msa0072810:intron 25.0%
!!! GTGTTGTTTTGTTTTTGTTT+GGG - chr1_2:45883503-45883522 Msa0072810:intron 25.0%
! ATCTGAGAAGATTAAAATCA+AGG - chr1_2:45883772-45883791 Msa0072810:intron 25.0%
!!! GTAACAAATTTTTTCCTTAC+GGG + chr1_2:45883822-45883841 None:intergenic 25.0%
!!! TATTTTTAACAAGTGCTGTA+AGG - chr1_2:45883999-45884018 Msa0072810:intron 25.0%
!!! ATTTTTAACAAGTGCTGTAA+GGG - chr1_2:45884000-45884019 Msa0072810:intron 25.0%
!!! ATATGTTGACTTTGTCAAAT+CGG + chr1_2:45884062-45884081 None:intergenic 25.0%
!! CTAAAAGTATAGTCAAAAAG+AGG + chr1_2:45884332-45884351 None:intergenic 25.0%
!!! TTTTGTTATGTGTAACAGAA+TGG + chr1_2:45884576-45884595 None:intergenic 25.0%
! TTACTATCAGTTGAAGAATT+AGG - chr1_2:45884660-45884679 Msa0072810:three_prime_UTR 25.0%
!! CTCTTTTACTCATTTCAATT+AGG + chr1_2:45884910-45884929 None:intergenic 25.0%
! CTAGAAAGAAAGAAACAAAA+AGG - chr1_2:45884930-45884949 Msa0072810:three_prime_UTR 25.0%
! TGTTTCCTTATATAATAAGC+AGG - chr1_2:45884996-45885015 Msa0072810:three_prime_UTR 25.0%
!!! AGTATTTATTTTGTGCTAGT+AGG - chr1_2:45885120-45885139 Msa0072810:three_prime_UTR 25.0%
! TAAAAAATTTCAGCAAGCTT+TGG - chr1_2:45885317-45885336 Msa0072810:CDS 25.0%
!! TCATGACGGAAAATAATTAA+CGG + chr1_2:45885344-45885363 None:intergenic 25.0%
! ACATAAATCAAAAGTCATGA+CGG + chr1_2:45885358-45885377 None:intergenic 25.0%
! TGCGAAGTATAAAATCTTAA+CGG - chr1_2:45885728-45885747 Msa0072810:CDS 25.0%
! TCCTTCTATATACAAATGAA+AGG - chr1_2:45885811-45885830 Msa0072810:intron 25.0%
! TCCTTTCATTTGTATATAGA+AGG + chr1_2:45885815-45885834 None:intergenic 25.0%
! TTACAACGATATCAAGTATA+GGG + chr1_2:45886054-45886073 None:intergenic 25.0%
! TTTACAACGATATCAAGTAT+AGG + chr1_2:45886055-45886074 None:intergenic 25.0%
! GTTGTAAACTACCAAAAATA+TGG - chr1_2:45886067-45886086 Msa0072810:intron 25.0%
!!! ACATATGTTTTGTTACTTGT+AGG + chr1_2:45886408-45886427 None:intergenic 25.0%
!! CACTCTAACATTTGTTAATT+AGG - chr1_2:45886525-45886544 Msa0072810:intron 25.0%
!!! AATTCACTTTTTTTTTGTGG+TGG - chr1_2:45886609-45886628 Msa0072810:intron 25.0%
! AATCTCATGTATGTAAAAGT+TGG + chr1_2:45886888-45886907 None:intergenic 25.0%
!! TCACTTAATTTGAGAAACTT+AGG - chr1_2:45886907-45886926 Msa0072810:intron 25.0%
!! AATGTATTTCTGTAGACTTA+GGG + chr1_2:45887261-45887280 None:intergenic 25.0%
!! AAATGTATTTCTGTAGACTT+AGG + chr1_2:45887262-45887281 None:intergenic 25.0%
! ACATCATATAACAGTACATT+TGG + chr1_2:45887433-45887452 None:intergenic 25.0%
! GAGTACTAAATTGAAAAACA+AGG + chr1_2:45887464-45887483 None:intergenic 25.0%
TTATCACGACATACAATCAA+AGG - chr1_2:45882673-45882692 Msa0072810:three_prime_UTR 30.0%
TATCACGACATACAATCAAA+GGG - chr1_2:45882674-45882693 Msa0072810:three_prime_UTR 30.0%
CTCAATGTCTTTACTATGAA+AGG + chr1_2:45882716-45882735 None:intergenic 30.0%
TGCAATCAAGAAGCTATATT+GGG + chr1_2:45882747-45882766 None:intergenic 30.0%
ATGCAATCAAGAAGCTATAT+TGG + chr1_2:45882748-45882767 None:intergenic 30.0%
!!! TGGTGTGAAATTAGTTTTAC+CGG + chr1_2:45882780-45882799 None:intergenic 30.0%
TGAACACTATTTAAGAGGTT+TGG + chr1_2:45882800-45882819 None:intergenic 30.0%
GCATATGAACACTATTTAAG+AGG + chr1_2:45882805-45882824 None:intergenic 30.0%
AAGTATCATATATAGTGTCG+AGG + chr1_2:45882887-45882906 None:intergenic 30.0%
TTGAAGAGACCAATAATAGT+AGG - chr1_2:45883035-45883054 Msa0072810:intron 30.0%
!!! ATAGTAGGTTGCATTTTTTG+TGG - chr1_2:45883050-45883069 Msa0072810:intron 30.0%
!!! TTGCATTTTTTGTGGTCATT+CGG - chr1_2:45883058-45883077 Msa0072810:intron 30.0%
AGATGCATAAACAAATTAGG+TGG + chr1_2:45883165-45883184 None:intergenic 30.0%
ATGCTACTATTTGGATGATT+TGG - chr1_2:45883247-45883266 Msa0072810:intron 30.0%
! TATTTGGATGATTTGGAAGA+TGG - chr1_2:45883254-45883273 Msa0072810:intron 30.0%
! ATTTGGATGATTTGGAAGAT+GGG - chr1_2:45883255-45883274 Msa0072810:intron 30.0%
!! TTAAGGTTTTGTCTTGGTAT+TGG - chr1_2:45883334-45883353 Msa0072810:intron 30.0%
!!! CATTGTGTTTGTTTTATGAG+TGG - chr1_2:45883379-45883398 Msa0072810:intron 30.0%
!!! GTTTGTTTTATGAGTGGTTT+TGG - chr1_2:45883385-45883404 Msa0072810:intron 30.0%
ATCAAATCAAACACTGTCTT+GGG + chr1_2:45883413-45883432 None:intergenic 30.0%
TATCAAATCAAACACTGTCT+TGG + chr1_2:45883414-45883433 None:intergenic 30.0%
!! AGTGTTTGATTTGATAGTTG+CGG - chr1_2:45883418-45883437 Msa0072810:intron 30.0%
AACAAAAACAAAACAACACC+AGG + chr1_2:45883502-45883521 None:intergenic 30.0%
!!! GGTGTTGTTTTGTTTTTGTT+TGG - chr1_2:45883502-45883521 Msa0072810:intron 30.0%
!!! TTGTTTTTGTTTGGGTTGAT+TGG - chr1_2:45883511-45883530 Msa0072810:intron 30.0%
!!! TGTTTTTGTTTGGGTTGATT+GGG - chr1_2:45883512-45883531 Msa0072810:intron 30.0%
!!! TTAGCTTGTTTTTGCTTGTT+TGG - chr1_2:45883577-45883596 Msa0072810:intron 30.0%
AGAGAAAACAATTATGCTTG+TGG + chr1_2:45883622-45883641 None:intergenic 30.0%
AATCAATCCAATCAACTCAA+GGG + chr1_2:45883661-45883680 None:intergenic 30.0%
AAATCAATCCAATCAACTCA+AGG + chr1_2:45883662-45883681 None:intergenic 30.0%
!! GATACTTGTTATGATGTCAA+GGG + chr1_2:45883970-45883989 None:intergenic 30.0%
!! TGATACTTGTTATGATGTCA+AGG + chr1_2:45883971-45883990 None:intergenic 30.0%
ATCATAATCATTGCACTACT+AGG - chr1_2:45884086-45884105 Msa0072810:three_prime_UTR 30.0%
AGGAAAATCGAATTACTAGT+TGG - chr1_2:45884106-45884125 Msa0072810:three_prime_UTR 30.0%
TAGTTATTAGCTGCAATGTT+TGG - chr1_2:45884180-45884199 Msa0072810:three_prime_UTR 30.0%
CTGCAATGTTTAGCATAAAT+AGG - chr1_2:45884225-45884244 Msa0072810:three_prime_UTR 30.0%
TTTGGTTAATACTGGAAACA+AGG + chr1_2:45884261-45884280 None:intergenic 30.0%
TGTATTTGGAGATTCAATCA+TGG - chr1_2:45884416-45884435 Msa0072810:three_prime_UTR 30.0%
ATACTGGAAATAACAACAAC+AGG - chr1_2:45884439-45884458 Msa0072810:three_prime_UTR 30.0%
AGAATATCTTCCAGCATATT+TGG - chr1_2:45884689-45884708 Msa0072810:three_prime_UTR 30.0%
TCCTTTGACATCAAAAATAG+AGG - chr1_2:45884779-45884798 Msa0072810:three_prime_UTR 30.0%
!!! ACCTCTATTTTTGATGTCAA+AGG + chr1_2:45884783-45884802 None:intergenic 30.0%
!! TTAGAGATTGATTTGATCGA+TGG + chr1_2:45884826-45884845 None:intergenic 30.0%
GAATATATTGTGAAGCTGAA+AGG - chr1_2:45885057-45885076 Msa0072810:three_prime_UTR 30.0%
TATAAGCTGAGTCTACTAAA+AGG + chr1_2:45885221-45885240 None:intergenic 30.0%
CTCAGCTTATAATTTCTACA+AGG - chr1_2:45885230-45885249 Msa0072810:three_prime_UTR 30.0%
!!! GGTAGTTTTATTATTCCACA+CGG - chr1_2:45885251-45885270 Msa0072810:three_prime_UTR 30.0%
!!! GTAGTTTTATTATTCCACAC+GGG - chr1_2:45885252-45885271 Msa0072810:three_prime_UTR 30.0%
!!! AGCTTGCTGAAATTTTTTAG+AGG + chr1_2:45885316-45885335 None:intergenic 30.0%
! CATGACGGAAAATAATTAAC+GGG + chr1_2:45885343-45885362 None:intergenic 30.0%
TGAAAGGAAATGTATCAACT+AGG - chr1_2:45885827-45885846 Msa0072810:intron 30.0%
TATTCAATGTACCACCAATT+GGG - chr1_2:45885867-45885886 Msa0072810:intron 30.0%
ACTTGGAAAATTCTGCTTAA+AGG + chr1_2:45886002-45886021 None:intergenic 30.0%
ATATAAACAATCCTGCTACT+TGG + chr1_2:45886019-45886038 None:intergenic 30.0%
AAGTAGCAGGATTGTTTATA+TGG - chr1_2:45886018-45886037 Msa0072810:intron 30.0%
ATATGGTTAATTCATCTCAG+TGG - chr1_2:45886157-45886176 Msa0072810:intron 30.0%
AATTGTAGTTAACCACAGTT+TGG + chr1_2:45886231-45886250 None:intergenic 30.0%
TCATGCTAATGTACAAAAAG+TGG - chr1_2:45886321-45886340 Msa0072810:intron 30.0%
TGCATAAAATATGCAAAGTC+CGG + chr1_2:45886649-45886668 None:intergenic 30.0%
GGATAAATGAAAATCACATG+CGG - chr1_2:45886763-45886782 Msa0072810:intron 30.0%
AAAACATGTACTTATCCCTT+AGG - chr1_2:45886809-45886828 Msa0072810:intron 30.0%
!! TTAATTGATAGTGAGAGTTC+AGG + chr1_2:45886787-45886806 None:intergenic 30.0%
! GGCAACAAGTATTTTGTAAA+CGG + chr1_2:45887240-45887259 None:intergenic 30.0%
CATATAACAGTACATTTGGA+TGG + chr1_2:45887429-45887448 None:intergenic 30.0%
ATCACGACATACAATCAAAG+GGG - chr1_2:45882675-45882694 Msa0072810:three_prime_UTR 35.0%
TTGATTGCATCTAACAGTAC+CGG - chr1_2:45882758-45882777 Msa0072810:three_prime_UTR 35.0%
!! GAAGAGATTTGTTGGAACAT+TGG + chr1_2:45882851-45882870 None:intergenic 35.0%
GTCGTTAAGAAGAGATTTGT+TGG + chr1_2:45882859-45882878 None:intergenic 35.0%
!!! TCACCTTTTTTTCCATTGTG+AGG - chr1_2:45883094-45883113 Msa0072810:intron 35.0%
TCACCTCACAATGGAAAAAA+AGG + chr1_2:45883100-45883119 None:intergenic 35.0%
TAGTTTGGCATGCTACTATT+TGG - chr1_2:45883238-45883257 Msa0072810:intron 35.0%
! TTTGGATGATTTGGAAGATG+GGG - chr1_2:45883256-45883275 Msa0072810:intron 35.0%
!! TAATAATAAGGTAGTGGAGG+TGG - chr1_2:45883293-45883312 Msa0072810:intron 35.0%
!! TTTGATTTGATAGTTGCGGT+GGG - chr1_2:45883422-45883441 Msa0072810:intron 35.0%
!!! TTTATTGTGCTGGTTTTCAC+AGG - chr1_2:45883447-45883466 Msa0072810:intron 35.0%
AACAAGCTAACAAAAGCCTA+TGG + chr1_2:45883567-45883586 None:intergenic 35.0%
ATCAATCCAATCAACTCAAG+GGG + chr1_2:45883660-45883679 None:intergenic 35.0%
AAATCAAGGCAAAAACCCAA+AGG - chr1_2:45883786-45883805 Msa0072810:intron 35.0%
AAGAGAGAGGGAAAACAAAA+GGG + chr1_2:45883855-45883874 None:intergenic 35.0%
TTAAATCCAAGCAAGAGAGA+GGG + chr1_2:45883867-45883886 None:intergenic 35.0%
GACTTTGTCAAATCGGTATA+AGG + chr1_2:45884055-45884074 None:intergenic 35.0%
TTTCCAGCAGTGTTTGTATT+TGG - chr1_2:45884402-45884421 Msa0072810:three_prime_UTR 35.0%
GAAAATCTTTGCCATATGGA+GGG + chr1_2:45884488-45884507 None:intergenic 35.0%
TGAAAATCTTTGCCATATGG+AGG + chr1_2:45884489-45884508 None:intergenic 35.0%
CCTTGAAAATCTTTGCCATA+TGG + chr1_2:45884492-45884511 None:intergenic 35.0%
! CCATATGGCAAAGATTTTCA+AGG - chr1_2:45884489-45884508 Msa0072810:three_prime_UTR 35.0%
!! TATGGCAAAGATTTTCAAGG+AGG - chr1_2:45884492-45884511 Msa0072810:three_prime_UTR 35.0%
TGGAAGATTTAGCAATGGAA+AGG - chr1_2:45884524-45884543 Msa0072810:three_prime_UTR 35.0%
ATAGTACCTATAAGATCTGC+TGG + chr1_2:45884552-45884571 None:intergenic 35.0%
AGATTTGGATCCAAATATGC+TGG + chr1_2:45884702-45884721 None:intergenic 35.0%
AATTCACTAGGCTGAAGATT+TGG + chr1_2:45884717-45884736 None:intergenic 35.0%
AAATCTTCAGCCTAGTGAAT+TGG - chr1_2:45884716-45884735 Msa0072810:three_prime_UTR 35.0%
AGCTGCCTGCTTATTATATA+AGG + chr1_2:45885004-45885023 None:intergenic 35.0%
ACTAAAAGGTCAGAGTATGA+AGG + chr1_2:45885207-45885226 None:intergenic 35.0%
! ATGAGTGCACTTAAAAGCAT+GGG - chr1_2:45885647-45885666 Msa0072810:CDS 35.0%
AAAGCATGGGAGAAAACATT+TGG - chr1_2:45885660-45885679 Msa0072810:CDS 35.0%
!! AACTTGCTGAAAACTCATAG+AGG - chr1_2:45885689-45885708 Msa0072810:CDS 35.0%
! ACTTGCTGAAAACTCATAGA+GGG - chr1_2:45885690-45885709 Msa0072810:CDS 35.0%
AAATGTATCAACTAGGTGCA+AGG - chr1_2:45885834-45885853 Msa0072810:intron 35.0%
GTATTCAATGTACCACCAAT+TGG - chr1_2:45885866-45885885 Msa0072810:intron 35.0%
TCAATTCACGGTGAAAATTG+TGG - chr1_2:45886189-45886208 Msa0072810:intron 35.0%
TCATCTACAAAACCAAACTG+TGG - chr1_2:45886216-45886235 Msa0072810:intron 35.0%
!! ATGTTTTGTTACTTGTAGGC+CGG + chr1_2:45886404-45886423 None:intergenic 35.0%
!!! CACTTTTTTTTTGTGGTGGT+CGG - chr1_2:45886613-45886632 Msa0072810:intron 35.0%
!!! ACTTTTTTTTTGTGGTGGTC+GGG - chr1_2:45886614-45886633 Msa0072810:intron 35.0%
CATAAAATATGCAAAGTCCG+GGG + chr1_2:45886647-45886666 None:intergenic 35.0%
GCATAAAATATGCAAAGTCC+GGG + chr1_2:45886648-45886667 None:intergenic 35.0%
GAGTTCAGGAATAAACCTAA+GGG + chr1_2:45886827-45886846 None:intergenic 35.0%
AGAGTTCAGGAATAAACCTA+AGG + chr1_2:45886828-45886847 None:intergenic 35.0%
CACTATCAATTAAGAAGCTC+CGG - chr1_2:45886848-45886867 Msa0072810:intron 35.0%
TGTAAAAGTTGGAATGAACC+CGG + chr1_2:45886877-45886896 None:intergenic 35.0%
! ATTTTGTAAACGGCTTCAGT+AGG + chr1_2:45887230-45887249 None:intergenic 35.0%
AGTACATTTGGATGGAATCA+AGG + chr1_2:45887421-45887440 None:intergenic 35.0%
!!! CATTTTTTGTGGTCATTCGG+AGG - chr1_2:45883061-45883080 Msa0072810:intron 40.0%
! CTTGGTATTGGAGTATGAGT+AGG - chr1_2:45883346-45883365 Msa0072810:intron 40.0%
!! GTTTGATTTGATAGTTGCGG+TGG - chr1_2:45883421-45883440 Msa0072810:intron 40.0%
AACACCAGGCAAAATATCAG+AGG + chr1_2:45883488-45883507 None:intergenic 40.0%
!! TTTGGGTTGATTGGGCTATA+GGG - chr1_2:45883520-45883539 Msa0072810:intron 40.0%
! TGTTTGTTTGCTACTGCCAT+AGG - chr1_2:45883548-45883567 Msa0072810:intron 40.0%
!!! GCTTGTTTTTGCTTGTTTGG+TGG - chr1_2:45883580-45883599 Msa0072810:intron 40.0%
TTCATACACACAACTCTCTC+TGG - chr1_2:45883739-45883758 Msa0072810:intron 40.0%
ACGGGTCTTAAGAATCCTTT+GGG + chr1_2:45883804-45883823 None:intergenic 40.0%
TACGGGTCTTAAGAATCCTT+TGG + chr1_2:45883805-45883824 None:intergenic 40.0%
AAGGATTCTTAAGACCCGTA+AGG - chr1_2:45883805-45883824 Msa0072810:intron 40.0%
CAAGAGAGAGGGAAAACAAA+AGG + chr1_2:45883856-45883875 None:intergenic 40.0%
CTTAAATCCAAGCAAGAGAG+AGG + chr1_2:45883868-45883887 None:intergenic 40.0%
!! ATGCAATGTTCTAAGAACCG+AGG - chr1_2:45883931-45883950 Msa0072810:intron 40.0%
! GGAGAAGTGTAGTGCAAATT+GGG + chr1_2:45884311-45884330 None:intergenic 40.0%
! AGGAGAAGTGTAGTGCAAAT+TGG + chr1_2:45884312-45884331 None:intergenic 40.0%
TCTCCAAATACAAACACTGC+TGG + chr1_2:45884408-45884427 None:intergenic 40.0%
GGAGATTCAATCATGGATAC+TGG - chr1_2:45884423-45884442 Msa0072810:three_prime_UTR 40.0%
!! AATTTGCACTGAGTTGGTGT+TGG + chr1_2:45884465-45884484 None:intergenic 40.0%
TTTCAAGGAGGAATTCCAAC+TGG - chr1_2:45884504-45884523 Msa0072810:three_prime_UTR 40.0%
CCATTGCTAAATCTTCCAGT+TGG + chr1_2:45884522-45884541 None:intergenic 40.0%
CCAACTGGAAGATTTAGCAA+TGG - chr1_2:45884519-45884538 Msa0072810:three_prime_UTR 40.0%
AAGGTTCCAGCAGATCTTAT+AGG - chr1_2:45884543-45884562 Msa0072810:three_prime_UTR 40.0%
CATGAGTGCACTTAAAAGCA+TGG - chr1_2:45885646-45885665 Msa0072810:CDS 40.0%
! AGCAGAATTTTCCAAGTAGC+AGG - chr1_2:45886005-45886024 Msa0072810:intron 40.0%
!!! CTTTTTTTTTGTGGTGGTCG+GGG - chr1_2:45886615-45886634 Msa0072810:intron 40.0%
AAACACATAATCCGAGTCGT+TGG + chr1_2:45887192-45887211 None:intergenic 40.0%
!! ACGACTCGGATTATGTGTTT+TGG - chr1_2:45887192-45887211 Msa0072810:intron 40.0%
!! CGACTCGGATTATGTGTTTT+GGG - chr1_2:45887193-45887212 Msa0072810:intron 40.0%
TTTGGAAGATGGGGAATGAC+CGG - chr1_2:45883265-45883284 Msa0072810:intron 45.0%
TTCACAGGCCACTGTTATGT+AGG - chr1_2:45883462-45883481 Msa0072810:intron 45.0%
ATCAGAGGCCTACATAACAG+TGG + chr1_2:45883473-45883492 None:intergenic 45.0%
! TAGGCCTCTGATATTTTGCC+TGG - chr1_2:45883481-45883500 Msa0072810:intron 45.0%
!! GTTTGGGTTGATTGGGCTAT+AGG - chr1_2:45883519-45883538 Msa0072810:intron 45.0%
! TTTGCTTGTTTGGTGGCTTC+TGG - chr1_2:45883587-45883606 Msa0072810:intron 45.0%
! TGTTTTCCCTCTCTCTTGCT+TGG - chr1_2:45883858-45883877 Msa0072810:intron 45.0%
! TTAACAAGTGCTGTAAGGGC+AGG - chr1_2:45884004-45884023 Msa0072810:intron 45.0%
! TAACAAGTGCTGTAAGGGCA+GGG - chr1_2:45884005-45884024 Msa0072810:intron 45.0%
TGTCAAATCGGTATAAGGCG+TGG + chr1_2:45884050-45884069 None:intergenic 45.0%
! ACTGCTGGAAACGAAGCATT+TGG + chr1_2:45884393-45884412 None:intergenic 45.0%
CAGTGCAAATTCCCTCCATA+TGG - chr1_2:45884474-45884493 Msa0072810:three_prime_UTR 45.0%
CAGCCTAGTGAATTGGTTAC+CGG - chr1_2:45884723-45884742 Msa0072810:three_prime_UTR 45.0%
ACACCGGTAACCAATTCACT+AGG + chr1_2:45884729-45884748 None:intergenic 45.0%
! ACCGGTGTTAACTTTGCTTC+CGG - chr1_2:45884741-45884760 Msa0072810:three_prime_UTR 45.0%
ACCGGAAGCAAAGTTAACAC+CGG + chr1_2:45884745-45884764 None:intergenic 45.0%
! GTGAAGCTGAAAGGACTAGT+TGG - chr1_2:45885066-45885085 Msa0072810:three_prime_UTR 45.0%
TTACAAGGATCAAACCCGTG+TGG + chr1_2:45885269-45885288 None:intergenic 45.0%
TGTATCAACTAGGTGCAAGG+AGG - chr1_2:45885837-45885856 Msa0072810:intron 45.0%
AATTAAGAAGCTCCGGTTGC+CGG - chr1_2:45886855-45886874 Msa0072810:intron 45.0%
GCTTCAAAGTTGTAGACCGA+GGG - chr1_2:45887105-45887124 Msa0072810:intron 45.0%
!!! AAAAAAATACATTTTATTAA+TGG - chr1_2:45883709-45883728 Msa0072810:intron 5.0%
!!! ATTAATCATTTTAAAAAATA+TGG - chr1_2:45886140-45886159 Msa0072810:intron 5.0%
GTTGTGGCGCTTCGTTAGTT+TGG - chr1_2:45883223-45883242 Msa0072810:intron 50.0%
!! GGTAGTGGAGGTGGATGAAT+TGG - chr1_2:45883302-45883321 Msa0072810:intron 50.0%
ATCAACTCAAGGGGAGCAGA+CGG + chr1_2:45883651-45883670 None:intergenic 50.0%
!! TCTGCTCCCCTTGAGTTGAT+TGG - chr1_2:45883651-45883670 Msa0072810:intron 50.0%
AGGGTCTCATGAGCTTACCT+CGG + chr1_2:45883951-45883970 None:intergenic 50.0%
! GCTGGAAACGAAGCATTTGG+TGG + chr1_2:45884390-45884409 None:intergenic 50.0%
GGAGGGAATTTGCACTGAGT+TGG + chr1_2:45884471-45884490 None:intergenic 50.0%
GGTGTTAACTTTGCTTCCGG+TGG - chr1_2:45884744-45884763 Msa0072810:three_prime_UTR 50.0%
AGGATCATATCCTGCACCAC+CGG + chr1_2:45884763-45884782 None:intergenic 50.0%
CAACTAGGTGCAAGGAGGAT+AGG - chr1_2:45885842-45885861 Msa0072810:intron 50.0%
TGAAACGGTACGCACCCAAT+TGG + chr1_2:45885884-45885903 None:intergenic 50.0%
CGTACCGTTTCAGAGAACAG+TGG - chr1_2:45885892-45885911 Msa0072810:intron 50.0%
! CCAGCCACTGTTCTCTGAAA+CGG + chr1_2:45885899-45885918 None:intergenic 50.0%
TTTCAGAGAACAGTGGCTGG+AGG - chr1_2:45885899-45885918 Msa0072810:intron 50.0%
! TGAGCATAGCTCGGTTGGTA+AGG + chr1_2:45886676-45886695 None:intergenic 50.0%
ATTAAGAAGCTCCGGTTGCC+GGG - chr1_2:45886856-45886875 Msa0072810:intron 50.0%
GGCTTCAAAGTTGTAGACCG+AGG - chr1_2:45887104-45887123 Msa0072810:intron 50.0%
! TGGCACAAGTGGGTTCCAAA+TGG + chr1_2:45887172-45887191 None:intergenic 50.0%
CGTGCGAGATCACCTCACAA+TGG + chr1_2:45883109-45883128 None:intergenic 55.0%
GTGAGGTGATCTCGCACGTT+TGG - chr1_2:45883111-45883130 Msa0072810:intron 55.0%
CGCCACAACGAAGCTTCTTG+GGG + chr1_2:45883212-45883231 None:intergenic 55.0%
GCGCCACAACGAAGCTTCTT+GGG + chr1_2:45883213-45883232 None:intergenic 55.0%
AGCGCCACAACGAAGCTTCT+TGG + chr1_2:45883214-45883233 None:intergenic 55.0%
GCGGTGGGAGTTTATTGTGC+TGG - chr1_2:45883437-45883456 Msa0072810:intron 55.0%
TCAACTCAAGGGGAGCAGAC+GGG + chr1_2:45883650-45883669 None:intergenic 55.0%
AACTTTGCTTCCGGTGGTGC+AGG - chr1_2:45884750-45884769 Msa0072810:three_prime_UTR 55.0%
AACGGTACGCACCCAATTGG+TGG + chr1_2:45885881-45885900 None:intergenic 55.0%
CCGTTTCAGAGAACAGTGGC+TGG - chr1_2:45885896-45885915 Msa0072810:intron 55.0%
GTGTCCTCGTGAGCATAGCT+CGG + chr1_2:45886685-45886704 None:intergenic 55.0%
GTTGGAATGAACCCGGCAAC+CGG + chr1_2:45886870-45886889 None:intergenic 55.0%
ACCCACTTGTGCCAACGACT+CGG - chr1_2:45887178-45887197 Msa0072810:intron 55.0%
TCCGAGTCGTTGGCACAAGT+GGG + chr1_2:45887182-45887201 None:intergenic 55.0%
ATCCGAGTCGTTGGCACAAG+TGG + chr1_2:45887183-45887202 None:intergenic 55.0%
! GATCTCGCACGTTTGGCTCG+AGG - chr1_2:45883118-45883137 Msa0072810:intron 60.0%
GGCCCCAAGAAGCTTCGTTG+TGG - chr1_2:45883207-45883226 Msa0072810:intron 60.0%
CCTCGTGAGCATAGCTCGGT+TGG + chr1_2:45886681-45886700 None:intergenic 60.0%
CCAACCGAGCTATGCTCACG+AGG - chr1_2:45886678-45886697 Msa0072810:intron 60.0%
!! GTTGTAGACCGAGGGTGCTG+TGG - chr1_2:45887113-45887132 Msa0072810:intron 60.0%
GGTGGTCGGGGTTTGAACCC+CGG - chr1_2:45886627-45886646 Msa0072810:intron 65.0%
!! GACCGAGGGTGCTGTGGCAC+AGG - chr1_2:45887119-45887138 Msa0072810:intron 70.0%
CGCCTGTGCCACAGCACCCT+CGG + chr1_2:45887124-45887143 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 45882650 45887487 45882650 ID=Msa0072810;Name=Msa0072810
chr1_2 mRNA 45882650 45887487 45882650 ID=Msa0072810-mRNA-1;Parent=Msa0072810;Name=Msa0072810-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.66|0.5|0.75|1|0.75|4|1650|119
chr1_2 exon 45882650 45883032 45882650 ID=Msa0072810-mRNA-1:exon:13943;Parent=Msa0072810-mRNA-1
chr1_2 exon 45884049 45885467 45884049 ID=Msa0072810-mRNA-1:exon:13942;Parent=Msa0072810-mRNA-1
chr1_2 exon 45885573 45885775 45885573 ID=Msa0072810-mRNA-1:exon:13941;Parent=Msa0072810-mRNA-1
chr1_2 exon 45887483 45887487 45887483 ID=Msa0072810-mRNA-1:exon:13940;Parent=Msa0072810-mRNA-1
chr1_2 CDS 45887483 45887487 45887483 ID=Msa0072810-mRNA-1:cds;Parent=Msa0072810-mRNA-1
chr1_2 CDS 45885573 45885775 45885573 ID=Msa0072810-mRNA-1:cds;Parent=Msa0072810-mRNA-1
chr1_2 CDS 45885316 45885467 45885316 ID=Msa0072810-mRNA-1:cds;Parent=Msa0072810-mRNA-1
chr1_2 three_prime_UTR 45884049 45885315 45884049 ID=Msa0072810-mRNA-1:three_prime_utr;Parent=Msa0072810-mRNA-1
chr1_2 three_prime_UTR 45882650 45883032 45882650 ID=Msa0072810-mRNA-1:three_prime_utr;Parent=Msa0072810-mRNA-1
Gene Sequence

>Msa0072810

ATGAACAAAACAAAAGCTATTTTGAAACTGCCACCAAATGCTTCGTTTCCAGCAGTGTTTGTATTTGGAGATTCAATCATGGATACTGGAAATAACAACAACAGGCCAACACCAACTCAGTGCAAATTCCCTCCATATGGCAAAGATTTTCAAGGAGGAATTCCAACTGGAAGATTTAGCAATGGAAAGGTTCCAGCAGATCTTATAGTTGAAGAATTAGGCATTAAAGAATATCTTCCAGCATATTTGGATCCAAATCTTCAGCCTAGTGAATTGGTTACCGGTGTTAACTTTGCTTCCGGTGGTGCAGGATATGATCCTTTGACATCAAAAATAGAGGTATCTATTTTTTCAGAATAA
Protein sequence

>Msa0072810

MNKTKAILKLPPNASFPAVFVFGDSIMDTGNNNNRPTPTQCKFPPYGKDFQGGIPTGRFSNGKVPADLIVEELGIKEYLPAYLDPNLQPSELVTGVNFASGGAGYDPLTSKIEVSIFSE*