AlfalfaGEDB | Msa1145560

M. sativa cultivar zhongmu-4 / Msa1145560

KEGG: K10583
GO: GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF00179.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145560	XP_003624799.1	98.127	267	5	0	50	316	1	267	0.0	536

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145560	sp\|Q9FF66\|UBC22_ARATH	68.165	267	69	2	50	316	1	251	4.13e-126	363

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145560	G7L3N3	98.127	267	5	0	50	316	1	267	0.0	536

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021710	Msa1145560	-0.800861	1.181570e-48	-8.615850e-47
Msa0154270	Msa1145560	-0.800193	1.616675e-48	-8.615850e-47
Msa0224370	Msa1145560	-0.811007	8.681819e-51	-8.615850e-47
Msa0224400	Msa1145560	-0.823459	1.369232e-53	-8.615850e-47
Msa0622250	Msa1145560	-0.831541	1.574266e-55	-8.615850e-47
Msa0646190	Msa1145560	-0.801264	9.771769e-49	-8.615850e-47
Msa0679780	Msa1145560	-0.812856	3.434917e-51	-8.615850e-47
Msa0748330	Msa1145560	-0.831816	1.347067e-55	-8.615850e-47
Msa0968780	Msa1145560	-0.826762	2.270913e-54	-8.615850e-47
Msa1036020	Msa1145560	0.819554	1.092853e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145560	MtrunA17_Chr7g0254701	98.127	267	5	0	50	316	1	267	0.0	536
Msa1145560	MtrunA17_Chr4g0060351	36.029	136	87	0	62	197	7	142	7.06e-29	108
Msa1145560	MtrunA17_Chr8g0362321	35.294	136	88	0	62	197	7	142	7.93e-29	108
Msa1145560	MtrunA17_Chr2g0316211	38.158	152	90	1	53	204	3	150	1.49e-28	107
Msa1145560	MtrunA17_Chr2g0316201	37.500	152	91	1	53	204	3	150	7.27e-28	105
Msa1145560	MtrunA17_Chr3g0131871	36.154	130	82	1	78	206	22	151	4.24e-26	102
Msa1145560	MtrunA17_Chr3g0108261	34.965	143	93	0	62	204	4	146	1.23e-24	97.4
Msa1145560	MtrunA17_Chr5g0432831	34.965	143	93	0	62	204	4	146	1.23e-24	97.4
Msa1145560	MtrunA17_Chr1g0154011	34.965	143	93	0	62	204	4	146	1.31e-24	97.1
Msa1145560	MtrunA17_Chr7g0275361	34.266	143	94	0	62	204	4	146	4.95e-24	95.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145560	AT5G05080.2	68.165	267	69	2	50	316	1	251	4.20e-127	363
Msa1145560	AT5G05080.3	68.165	267	69	2	50	316	1	251	4.20e-127	363
Msa1145560	AT5G05080.1	68.165	267	69	2	50	316	1	251	4.20e-127	363
Msa1145560	AT5G05080.4	68.165	267	69	2	50	316	1	251	4.20e-127	363
Msa1145560	AT2G02760.1	35.294	136	88	0	62	197	7	142	2.31e-28	107
Msa1145560	AT2G02760.2	35.294	136	88	0	62	197	7	142	2.31e-28	107
Msa1145560	AT2G02760.4	35.294	136	88	0	62	197	7	142	2.31e-28	107
Msa1145560	AT2G02760.3	35.294	136	88	0	62	197	7	142	2.31e-28	107
Msa1145560	AT1G14400.1	35.294	136	88	0	62	197	7	142	3.45e-28	107
Msa1145560	AT1G14400.2	35.294	136	88	0	62	197	7	142	3.45e-28	107

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Find 73 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAGGCACAAATAAA+AGG	0.283841	7_4:-22426472	None:intergenic
AACTTTAATGCCCTCAGGAG+GGG	0.501972	7_4:-22425109	None:intergenic
AAGAGGAACTAGTCAGGATC+AGG	0.466133	7_4:+22426267	Msa1145560:CDS
AAGATGATGGAAAACTTCAA+AGG	0.586281	7_4:+22423300	None:intergenic
AAGGATTGGAATCCTAGCCT+TGG	0.504209	7_4:+22425653	Msa1145560:CDS
AAGTGTTTGAGTAAAATTAG+AGG	0.432184	7_4:-22426706	None:intergenic
AATATTTGGATGGAAAATCT+TGG	0.449656	7_4:-22425594	None:intergenic
ACAACTTTAATGCCCTCAGG+AGG	0.632908	7_4:-22425111	None:intergenic
ACACCTTTAGGAGGAGAGTG+TGG	0.641291	7_4:-22425327	None:intergenic
ACGACAACTTTAATGCCCTC+AGG	0.561456	7_4:-22425114	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCATCAATATGAACTTACA+AGG	-	chr7_4:22423455-22423474	None:intergenic	30.0%
GGGAATTGAAAAGAGAAATT+AGG	+	chr7_4:22423644-22423663	Msa1145560:intron	30.0%
TTAAAAAACTGACGTGCAAA+AGG	+	chr7_4:22424294-22424313	Msa1145560:intron	30.0%
AGGAATAATTACACGAAACT+TGG	+	chr7_4:22424314-22424333	Msa1145560:intron	30.0%
TGTAGTTGTTCTATTCCATT+TGG	+	chr7_4:22424904-22424923	Msa1145560:intron	30.0%
GTAGTTGTTCTATTCCATTT+GGG	+	chr7_4:22424905-22424924	Msa1145560:intron	30.0%
ATTACACGACAAATCCAAAA+TGG	-	chr7_4:22424953-22424972	None:intergenic	30.0%
TATTTAAACACACCTTTAGG+AGG	-	chr7_4:22425339-22425358	None:intergenic	30.0%
CATATTCTTATCGTAAGTCT+TGG	+	chr7_4:22425683-22425702	Msa1145560:intron	30.0%
ACTACTGCTTGAAAATTATG+AGG	+	chr7_4:22425872-22425891	Msa1145560:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	22423306	22426736	22423306	ID=Msa1145560;Name=Msa1145560
chr7_4	mRNA	22423306	22426736	22423306	ID=Msa1145560-mRNA-1;Parent=Msa1145560;Name=Msa1145560-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|0.8\|0.66\|0.83\|1\|1\|6\|286\|316
chr7_4	exon	22423306	22423455	22423306	ID=Msa1145560-mRNA-1:exon:5556;Parent=Msa1145560-mRNA-1
chr7_4	exon	22425039	22425183	22425039	ID=Msa1145560-mRNA-1:exon:5557;Parent=Msa1145560-mRNA-1
chr7_4	exon	22425268	22425345	22425268	ID=Msa1145560-mRNA-1:exon:5558;Parent=Msa1145560-mRNA-1
chr7_4	exon	22425582	22425694	22425582	ID=Msa1145560-mRNA-1:exon:5559;Parent=Msa1145560-mRNA-1
chr7_4	exon	22425810	22425913	22425810	ID=Msa1145560-mRNA-1:exon:5560;Parent=Msa1145560-mRNA-1
chr7_4	exon	22426090	22426736	22426090	ID=Msa1145560-mRNA-1:exon:5561;Parent=Msa1145560-mRNA-1
chr7_4	CDS	22423306	22423455	22423306	ID=Msa1145560-mRNA-1:cds;Parent=Msa1145560-mRNA-1
chr7_4	CDS	22425039	22425183	22425039	ID=Msa1145560-mRNA-1:cds;Parent=Msa1145560-mRNA-1
chr7_4	CDS	22425268	22425345	22425268	ID=Msa1145560-mRNA-1:cds;Parent=Msa1145560-mRNA-1
chr7_4	CDS	22425582	22425694	22425582	ID=Msa1145560-mRNA-1:cds;Parent=Msa1145560-mRNA-1
chr7_4	CDS	22425810	22425913	22425810	ID=Msa1145560-mRNA-1:cds;Parent=Msa1145560-mRNA-1
chr7_4	CDS	22426090	22426450	22426090	ID=Msa1145560-mRNA-1:cds;Parent=Msa1145560-mRNA-1
chr7_4	three_prime_UTR	22426451	22426736	22426451	ID=Msa1145560-mRNA-1:three_prime_utr;Parent=Msa1145560-mRNA-1

Gene Sequence

>Msa1145560

ATGGAAAACTTCAAAGGAATATCTTCGAATCTACACGTTTCTAACCGATCTGCCACTGCTACGTTCTGGACTGCTACGTTTCTAAACGAATCTACACGTTCTGGACTACACGCTCACGAACACCAATTCCGATCTACACGTTTTTGCCTTGCCACCAACGAAAATCTTCCGCCTAATGTGATAAGGCAACTTGCCAAGGAGTTGAAAAATCTTGATGAAACCCCTCCTGAGGGCATTAAAGTTGTCGTGAATGATGATGATTTTTCAACAATTTTTGCTGACATTGAAGGCCCTGCTGCAACTCCTTATGAGAGTGGAGTTTTCCGCATGAAGTTGAAACTATCGCATGATTTTCCACACTCTCCTCCTAAAGGATATTTCTTGACCAAGATTTTCCATCCAAATATTGCCAACAGTGGAGAGATTTGTGTCAACGCGCTCAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATATTCTTATCGTTGTTAGGTGTCTATTGATTGAACCGTTTCCAGAATCAGCTTTAAATGAACTGGCTGGTAAACTACTGCTTGAAAATTATGAGGAGTATGCTAGACATGCCAGGCTTTTAACCGGAATCCATGCAAAATCAAAGCCGAAATTCAAAAGTGGAGCTATAACCGAATCAACTACTGCTCTGAATGTTGATCAGACAAACACCTCGGTGCTTAATGCTGACATCAAAACCATGCCGTCAGGTGCTGCTCTGCCACCACTGTCATTGCCCTCAACCACTGGAGCAAGAGGAACTAGTCAGGATCAGGCAGTAGTGGGCGTTCTGACCGAGTCGTCTGCTAATGTTTCTTCTGCTGCCGCGGTAGTTTCTGCTGCTCATGCACCACAAAAGAGGGACATTGGAACTGCTAAAGCTCAGGCAGACAAGAAGAAGCTAGATGCTAGAAAGAAAAGTTTGAAAAGATTGTGA

Protein sequence

>Msa1145560

MENFKGISSNLHVSNRSATATFWTATFLNESTRSGLHAHEHQFRSTRFCLATNENLPPNVIRQLAKELKNLDETPPEGIKVVVNDDDFSTIFADIEGPAATPYESGVFRMKLKLSHDFPHSPPKGYFLTKIFHPNIANSGEICVNALKKDWNPSLGLRHILIVVRCLLIEPFPESALNELAGKLLLENYEEYARHARLLTGIHAKSKPKFKSGAITESTTALNVDQTNTSVLNADIKTMPSGAALPPLSLPSTTGARGTSQDQAVVGVLTESSANVSSAAAVVSAAHAPQKRDIGTAKAQADKKKLDARKKSLKRL*