AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1076520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1076520 MtrunA17_Chr7g0260531 87.730 163 11 3 1 162 1 155 5.37e-99 286
Msa1076520 MtrunA17_Chr1g0184911 51.852 162 74 3 1 162 9 166 1.07e-53 171
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1076520 AT1G03055.2 39.024 123 69 2 46 162 50 172 4.16e-23 91.3
Msa1076520 AT1G03055.1 39.024 123 69 2 46 162 50 172 1.88e-22 91.3

Find 63 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATATACTAATATTATT+TGG 0.179495 7_2:-75057154 Msa1076520:three_prime_UTR
AGGATTTGTTGTAGGCTTTA+AGG 0.181015 7_2:-75057421 Msa1076520:three_prime_UTR
AAATAATATTAGTATATAAT+AGG 0.224577 7_2:+75057156 None:intergenic
ATGTTCTTTACTTGGTTACT+TGG 0.266301 7_2:-75060388 Msa1076520:CDS
CAAAGGTTTATTTATATGAT+AGG 0.284336 7_2:-75057211 Msa1076520:three_prime_UTR
CCTTGTTGAGGCAGCTACTA+TGG 0.314275 7_2:-75060650 Msa1076520:CDS
GGATTTGTTGTAGGCTTTAA+GGG 0.320503 7_2:-75057420 Msa1076520:three_prime_UTR
ATGCAATAAGGATTGGAAAT+TGG 0.329708 7_2:-75057523 Msa1076520:three_prime_UTR
GCAATGGAATGAATTGTATA+AGG 0.338599 7_2:+75061059 None:intergenic
TCTGTAATGTCATGATTTGA+AGG 0.353713 7_2:+75060882 None:intergenic
CAGATTCTGCTCTTTCCGTT+TGG 0.357589 7_2:+75061157 None:intergenic
GTGTTAATAAGAGGCATATA+AGG 0.359524 7_2:+75061090 None:intergenic
TTGACTAAAGGATTTGTTGT+AGG 0.371806 7_2:-75057429 Msa1076520:three_prime_UTR
CTATCATATAAATAAACCTT+TGG 0.398207 7_2:+75057212 None:intergenic
CTAATGTCTACAAAGATAAC+TGG 0.401094 7_2:-75060836 Msa1076520:CDS
AATAATATTAGTATATAATA+GGG 0.409170 7_2:+75057157 None:intergenic
AATGAGCCTGAGAGAAACTA+TGG 0.410076 7_2:+75057327 None:intergenic
TCACCACTATGTTCTTTACT+TGG 0.413302 7_2:-75060396 Msa1076520:CDS
GGGAGAAGTGGTTTGACTAA+AGG 0.415057 7_2:-75057441 Msa1076520:three_prime_UTR
TTATTAATGTTAATTTAAAC+CGG 0.418972 7_2:-75057582 Msa1076520:three_prime_UTR
GAGTCTTTCAAGAGCTTGAA+TGG 0.427239 7_2:+75060588 None:intergenic
TATAAACATGTAATTATTAG+TGG 0.430014 7_2:+75057708 None:intergenic
CAAACGGAAAGAGCAGAATC+TGG 0.433242 7_2:-75061156 Msa1076520:five_prime_UTR
CTTTAGCATGCAATAAGGAT+TGG 0.438630 7_2:-75057530 Msa1076520:three_prime_UTR
CTTGTGAATTTGGGTGGTAG+TGG 0.454396 7_2:+75060436 None:intergenic
GGCTTTAAGGGCAGCAAGGA+TGG 0.455650 7_2:-75057408 Msa1076520:three_prime_UTR
GAACAACAAGTGTTAATAAG+AGG 0.472509 7_2:+75061081 None:intergenic
CTCAAAACAACATTCACAAA+TGG 0.473195 7_2:-75061015 Msa1076520:exon
CCCACAGTTTGTATTTGCAT+TGG 0.474798 7_2:-75060563 Msa1076520:intron
TGTTCTTTACTTGGTTACTT+GGG 0.479606 7_2:-75060387 Msa1076520:CDS
TGGCTGATGAGTATGAGTTT+TGG 0.479804 7_2:+75057347 None:intergenic
TGCTAAGGATCACTATTCTC+CGG 0.480828 7_2:+75057563 None:intergenic
ACTATAGAAGTTGGATGTTG+AGG 0.505938 7_2:+75060921 None:intergenic
AGCACGGCAACTATAGAAGT+TGG 0.508359 7_2:+75060912 None:intergenic
CATCAGCCATAGTTTCTCTC+AGG 0.509492 7_2:-75057333 Msa1076520:three_prime_UTR
GTTGAGGTTTATGTTTGATG+AGG 0.512812 7_2:+75060937 None:intergenic
ACCAATGCAAATACAAACTG+TGG 0.535997 7_2:+75060562 None:intergenic
CAGACTGTCTCTAGACGGTA+TGG 0.546844 7_2:-75057774 Msa1076520:CDS
CTGTCTCTAGACGGTATGGA+TGG 0.550258 7_2:-75057770 Msa1076520:CDS
GGCAAGGCATATAAAAGTCA+TGG 0.554697 7_2:-75057799 Msa1076520:CDS
AATCTATTATCTAAACCAAA+CGG 0.556799 7_2:-75061172 Msa1076520:five_prime_UTR
AATTCCCTTGTGAATTTGGG+TGG 0.557950 7_2:+75060430 None:intergenic
ATTTGAAGGCTTTCTAAGCA+CGG 0.562335 7_2:+75060896 None:intergenic
TGAACCTGTGGCAGCTTGAA+CGG 0.569981 7_2:+75060779 None:intergenic
CACTACCACCCAAATTCACA+AGG 0.576963 7_2:-75060435 Msa1076520:CDS
AAAACCGTTCAAGCTGCCAC+AGG 0.594953 7_2:-75060783 Msa1076520:intron
CCATAGTAGCTGCCTCAACA+AGG 0.595349 7_2:+75060650 None:intergenic
TTGGTTACTTGGGCCATCCG+AGG 0.598797 7_2:-75060377 Msa1076520:intron
TGTAGGCTTTAAGGGCAGCA+AGG 0.609155 7_2:-75057412 Msa1076520:three_prime_UTR
TGTGACAGAGAAATATGCAA+TGG 0.613866 7_2:+75061043 None:intergenic
TAACCAAGTAAAGAACATAG+TGG 0.616885 7_2:+75060393 None:intergenic
ATGTAATTATTAGTGGTACA+TGG 0.617075 7_2:+75057715 None:intergenic
TGGCTATGAGAGCCTTGTTG+AGG 0.620691 7_2:-75060662 Msa1076520:CDS
CCAATGCAAATACAAACTGT+GGG 0.624542 7_2:+75060563 None:intergenic
ATAAGTGACTAATAATCCAA+AGG 0.630896 7_2:-75057228 Msa1076520:three_prime_UTR
TTATTTATATGATAGGCAAG+TGG 0.638536 7_2:-75057204 Msa1076520:three_prime_UTR
GCATACGAAATGTGTGTGGG+AGG 0.644854 7_2:+75057372 None:intergenic
GGACTCAGAAACAATAAGAG+TGG 0.655708 7_2:-75060682 Msa1076520:CDS
GAAATTGGTGATGACAACAT+TGG 0.656972 7_2:-75057508 Msa1076520:three_prime_UTR
TGGAACAGACTGTCTCTAGA+CGG 0.681909 7_2:-75057779 Msa1076520:CDS
GGCAGCATACGAAATGTGTG+TGG 0.683839 7_2:+75057368 None:intergenic
GCAGCATACGAAATGTGTGT+GGG 0.701231 7_2:+75057369 None:intergenic
ACTACCACCCAAATTCACAA+GGG 0.738747 7_2:-75060434 Msa1076520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATGTTTAATGTAAA+TGG - chr7_2:75058215-75058234 Msa1076520:intron 10.0%
!!! ATTAATCTTTTTTAAATCAT+AGG + chr7_2:75058634-75058653 None:intergenic 10.0%
!! TATGAATTGAAAATATAAAT+TGG + chr7_2:75060385-75060404 None:intergenic 10.0%
!! TTATTAATGTTAATTTAAAC+CGG - chr7_2:75060745-75060764 Msa1076520:intron 10.0%
!! CTTAATTCATTTATACTATA+TGG - chr7_2:75058761-75058780 Msa1076520:intron 15.0%
!!! TTCATTTGTTTATTTTTTAG+TGG + chr7_2:75059338-75059357 None:intergenic 15.0%
!! TAACTTAACAGATATTATTT+AGG + chr7_2:75059565-75059584 None:intergenic 15.0%
!! TAATGATGAAAAATAAATGA+GGG - chr7_2:75060126-75060145 Msa1076520:intron 15.0%
!! AAAAAAAAGAGTAATAAAGT+TGG + chr7_2:75060449-75060468 None:intergenic 15.0%
!! TATAAACATGTAATTATTAG+TGG + chr7_2:75060622-75060641 None:intergenic 15.0%
!!! TTTATATTTTCTTCTTCTTT+GGG - chr7_2:75060636-75060655 Msa1076520:CDS 15.0%
!!! TAAAGAAAAATTTTATGCTA+AGG + chr7_2:75060782-75060801 None:intergenic 15.0%
!! AATCTATTATCTAAACCAAA+CGG - chr7_2:75057155-75057174 Msa1076520:three_prime_UTR 20.0%
!! ACAATTGAATTACAACAAAA+GGG + chr7_2:75057580-75057599 None:intergenic 20.0%
!! AACAATTGAATTACAACAAA+AGG + chr7_2:75057581-75057600 None:intergenic 20.0%
!! GAAATTACAATGCTTAAAAA+TGG + chr7_2:75057823-75057842 None:intergenic 20.0%
!! ACATAAAAACAATTTCATTG+TGG + chr7_2:75057845-75057864 None:intergenic 20.0%
!! GAAATTTACTATAAGCTTAA+TGG - chr7_2:75058094-75058113 Msa1076520:intron 20.0%
!! GATATGTTATAGATAAACTA+AGG + chr7_2:75058405-75058424 None:intergenic 20.0%
!!! ATCTTTTTTAAATCATAGGA+CGG + chr7_2:75058630-75058649 None:intergenic 20.0%
!! TGAATTATGAAGGATATATA+CGG + chr7_2:75058792-75058811 None:intergenic 20.0%
!! TCAAAAAAATTAATACATGC+AGG - chr7_2:75059119-75059138 Msa1076520:intron 20.0%
!! ATTCCAAATTAAACCTAAAT+AGG - chr7_2:75059263-75059282 Msa1076520:intron 20.0%
!!! TTTCCTATTTAGGTTTAATT+TGG + chr7_2:75059269-75059288 None:intergenic 20.0%
!! GTTAAGTTAAACTTCATATA+TGG - chr7_2:75059576-75059595 Msa1076520:intron 20.0%
!! ATATTAACTCAAGAACTATA+GGG + chr7_2:75059653-75059672 None:intergenic 20.0%
!! AATATTAACTCAAGAACTAT+AGG + chr7_2:75059654-75059673 None:intergenic 20.0%
!! AATGTTGAGTATTAATTCAA+TGG + chr7_2:75059940-75059959 None:intergenic 20.0%
!!! CTCATTTATTTTTCATCATT+AGG + chr7_2:75060127-75060146 None:intergenic 20.0%
!! CTAATGATGAAAAATAAATG+AGG - chr7_2:75060125-75060144 Msa1076520:intron 20.0%
!! GAGATTTATTTAATGATGTT+AGG + chr7_2:75060157-75060176 None:intergenic 20.0%
!! CTAAATGTATACTTCAATAA+TGG + chr7_2:75060182-75060201 None:intergenic 20.0%
!!! GTTTATATTTTCTTCTTCTT+TGG - chr7_2:75060635-75060654 Msa1076520:CDS 20.0%
!!! TTATATTTTCTTCTTCTTTG+GGG - chr7_2:75060637-75060656 Msa1076520:CDS 20.0%
!!! TACATTTTCTGTAGAAAATT+AGG - chr7_2:75060677-75060696 Msa1076520:CDS 20.0%
!!! GATTTTGCAATCATAAATAA+AGG + chr7_2:75060848-75060867 None:intergenic 20.0%
!!! AATCAAGTAGTTTCTATTTT+TGG - chr7_2:75060864-75060883 Msa1076520:CDS 20.0%
!!! ATCAAGTAGTTTCTATTTTT+GGG - chr7_2:75060865-75060884 Msa1076520:CDS 20.0%
!! CTATCATATAAATAAACCTT+TGG + chr7_2:75061118-75061137 None:intergenic 20.0%
!! CAAAGGTTTATTTATATGAT+AGG - chr7_2:75061116-75061135 Msa1076520:five_prime_UTR 20.0%
!! AAATGGAAACTAATGTTTTC+AGG - chr7_2:75057329-75057348 Msa1076520:intron 25.0%
! GTAATTCAATTGTTATCTCA+AGG - chr7_2:75057587-75057606 Msa1076520:three_prime_UTR 25.0%
!! TTGTAGTTTTTATTCTTTGC+AGG - chr7_2:75057624-75057643 Msa1076520:three_prime_UTR 25.0%
! AAAAATTCCCTTGTGAATTT+GGG + chr7_2:75057903-75057922 None:intergenic 25.0%
! AAAAAATTCCCTTGTGAATT+TGG + chr7_2:75057904-75057923 None:intergenic 25.0%
! TTTCAGTTGCATAATTAGTA+GGG + chr7_2:75058078-75058097 None:intergenic 25.0%
! ATTTCAGTTGCATAATTAGT+AGG + chr7_2:75058079-75058098 None:intergenic 25.0%
!!! TTTTTTTCAACAAGACTTAG+TGG + chr7_2:75058156-75058175 None:intergenic 25.0%
!! TCTTTAATTTAACCATGAGT+AGG - chr7_2:75058655-75058674 Msa1076520:intron 25.0%
! GACAAAAATCATAACAAGAA+AGG + chr7_2:75059028-75059047 None:intergenic 25.0%
!!! TCTTGTTATGATTTTTGTCA+TGG - chr7_2:75059029-75059048 Msa1076520:intron 25.0%
!! AATTAATACATGCAGGTTTT+TGG - chr7_2:75059126-75059145 Msa1076520:intron 25.0%
! TTCTTTATAAACGATTGAGT+TGG + chr7_2:75059196-75059215 None:intergenic 25.0%
!!! AGGTTTAATTTGGAATTGTT+AGG + chr7_2:75059259-75059278 None:intergenic 25.0%
! CATCATGATATTTCCTATTT+AGG + chr7_2:75059279-75059298 None:intergenic 25.0%
!!! TCATCATTGATTCATTTCAA+TGG - chr7_2:75059430-75059449 Msa1076520:intron 25.0%
!!! ATATGAGAGATGTCATTTTA+TGG + chr7_2:75059501-75059520 None:intergenic 25.0%
!! ATATTATTTAGGTTCATGAG+AGG + chr7_2:75059554-75059573 None:intergenic 25.0%
!! TTTTAATCTTCCAATGTATG+AGG - chr7_2:75059621-75059640 Msa1076520:intron 25.0%
! ATATCTCTAGTTAGTCAATT+TGG - chr7_2:75059681-75059700 Msa1076520:intron 25.0%
!! GACATTACATTACACTTTTA+AGG - chr7_2:75059995-75060014 Msa1076520:intron 25.0%
! TAATCACATTGTTTATAGCA+TGG + chr7_2:75060328-75060347 None:intergenic 25.0%
! ATGTAATTATTAGTGGTACA+TGG + chr7_2:75060615-75060634 None:intergenic 25.0%
!! TTTTTCTTTAGCATGCAATA+AGG - chr7_2:75060792-75060811 Msa1076520:CDS 25.0%
!!! TCAAGTAGTTTCTATTTTTG+GGG - chr7_2:75060866-75060885 Msa1076520:CDS 25.0%
! ATAAGTGACTAATAATCCAA+AGG - chr7_2:75061099-75061118 Msa1076520:five_prime_UTR 25.0%
! TTATTTATATGATAGGCAAG+TGG - chr7_2:75061123-75061142 Msa1076520:five_prime_UTR 25.0%
! GTGTTAATAAGAGGCATATA+AGG + chr7_2:75057240-75057259 None:intergenic 30.0%
GAACAACAAGTGTTAATAAG+AGG + chr7_2:75057249-75057268 None:intergenic 30.0%
GCAATGGAATGAATTGTATA+AGG + chr7_2:75057271-75057290 None:intergenic 30.0%
CTCAAAACAACATTCACAAA+TGG - chr7_2:75057312-75057331 Msa1076520:intron 30.0%
TCTGTAATGTCATGATTTGA+AGG + chr7_2:75057448-75057467 None:intergenic 30.0%
CTAATGTCTACAAAGATAAC+TGG - chr7_2:75057491-75057510 Msa1076520:three_prime_UTR 30.0%
! CTTGAACGGTTTTTGATAAA+TGG + chr7_2:75057537-75057556 None:intergenic 30.0%
!! GCTGTTTCTTTATCTGTAAT+TGG + chr7_2:75057872-75057891 None:intergenic 30.0%
TAACCAAGTAAAGAACATAG+TGG + chr7_2:75057937-75057956 None:intergenic 30.0%
ATGTTCTTTACTTGGTTACT+TGG - chr7_2:75057939-75057958 Msa1076520:intron 30.0%
TGTTCTTTACTTGGTTACTT+GGG - chr7_2:75057940-75057959 Msa1076520:intron 30.0%
!! AACATCTCAGTTTTATACCT+CGG + chr7_2:75057970-75057989 None:intergenic 30.0%
TTCAGTTGCATAATTAGTAG+GGG + chr7_2:75058077-75058096 None:intergenic 30.0%
!!! CTTGTATTTTGATAAACCTC+TGG + chr7_2:75058278-75058297 None:intergenic 30.0%
TTGCTAATGAAACTGAAATG+TGG + chr7_2:75058484-75058503 None:intergenic 30.0%
GTAAAAGCAAATAGCATACA+TGG + chr7_2:75058604-75058623 None:intergenic 30.0%
! TAAGAGAATCTGAGATCAAT+GGG - chr7_2:75058678-75058697 Msa1076520:intron 30.0%
! GATAGAGAAGCAATGATTTT+AGG - chr7_2:75058903-75058922 Msa1076520:intron 30.0%
! AGAAGCATGATCATAGATTA+TGG + chr7_2:75058985-75059004 None:intergenic 30.0%
ATCGTTTATAAAGAACACTC+TGG - chr7_2:75059201-75059220 Msa1076520:intron 30.0%
TCGTTTATAAAGAACACTCT+GGG - chr7_2:75059202-75059221 Msa1076520:intron 30.0%
!! TCATTGATTCATTTCAATGG+AGG - chr7_2:75059433-75059452 Msa1076520:intron 30.0%
AATGACATCTCTCATATCTA+TGG - chr7_2:75059504-75059523 Msa1076520:intron 30.0%
ATTGGATGTAAAAACACATG+AGG + chr7_2:75059838-75059857 None:intergenic 30.0%
TGAACTTATCATAGAATGAG+TGG - chr7_2:75060064-75060083 Msa1076520:intron 30.0%
ATGAGTTGTGAGATGATATT+TGG - chr7_2:75060259-75060278 Msa1076520:intron 30.0%
! CAAAACTTGAGACATGATTT+TGG - chr7_2:75060413-75060432 Msa1076520:CDS 30.0%
TTTATGTTCATATACCATGC+AGG - chr7_2:75060507-75060526 Msa1076520:intron 30.0%
ATGCAATAAGGATTGGAAAT+TGG - chr7_2:75060804-75060823 Msa1076520:CDS 30.0%
!! TTGACTAAAGGATTTGTTGT+AGG - chr7_2:75060898-75060917 Msa1076520:CDS 30.0%
TGTGACAGAGAAATATGCAA+TGG + chr7_2:75057287-75057306 None:intergenic 35.0%
GTTGAGGTTTATGTTTGATG+AGG + chr7_2:75057393-75057412 None:intergenic 35.0%
ACTATAGAAGTTGGATGTTG+AGG + chr7_2:75057409-75057428 None:intergenic 35.0%
ATTTGAAGGCTTTCTAAGCA+CGG + chr7_2:75057434-75057453 None:intergenic 35.0%
CCAATGCAAATACAAACTGT+GGG + chr7_2:75057767-75057786 None:intergenic 35.0%
ACCAATGCAAATACAAACTG+TGG + chr7_2:75057768-75057787 None:intergenic 35.0%
TCACCACTATGTTCTTTACT+TGG - chr7_2:75057931-75057950 Msa1076520:intron 35.0%
ATAAGCTTAATGGAGATAGC+TGG - chr7_2:75058104-75058123 Msa1076520:intron 35.0%
TGATTAGAAAGACACTTGCA+TGG - chr7_2:75058300-75058319 Msa1076520:intron 35.0%
TAATTGTCACACCAGTTAGT+GGG + chr7_2:75058432-75058451 None:intergenic 35.0%
AACTGAAATGTGGCATAATC+TGG + chr7_2:75058474-75058493 None:intergenic 35.0%
! GTAAGAGAATCTGAGATCAA+TGG - chr7_2:75058677-75058696 Msa1076520:intron 35.0%
CAGTCTACATCAAAAAATGC+AGG - chr7_2:75058717-75058736 Msa1076520:intron 35.0%
TATGTGACAGAATGTGTCTT+AGG + chr7_2:75058819-75058838 None:intergenic 35.0%
AGATCCTCTAAATCGTTGTA+TGG - chr7_2:75058851-75058870 Msa1076520:intron 35.0%
CTCTAAATCGTTGTATGGTT+CGG - chr7_2:75058856-75058875 Msa1076520:intron 35.0%
CGAAAGCTAATGTATCCTAT+TGG + chr7_2:75058884-75058903 None:intergenic 35.0%
TATGATCATGCTTCTCCTTA+CGG - chr7_2:75058990-75059009 Msa1076520:intron 35.0%
ATCATAACAAGAAAGGAGAG+TGG + chr7_2:75059021-75059040 None:intergenic 35.0%
TTGACAACAAACTCTTGCTA+TGG + chr7_2:75059058-75059077 None:intergenic 35.0%
!! TAATACATGCAGGTTTTTGG+AGG - chr7_2:75059129-75059148 Msa1076520:intron 35.0%
GAATTGTTAGGACACTTACT+TGG + chr7_2:75059247-75059266 None:intergenic 35.0%
!! CTACACTTGAAAGAGTATCA+TGG - chr7_2:75059371-75059390 Msa1076520:intron 35.0%
AATGGTTTCGGGATAAATTC+TGG + chr7_2:75059766-75059785 None:intergenic 35.0%
AGTTTACAATGAGGAATGTG+CGG + chr7_2:75059814-75059833 None:intergenic 35.0%
CCAACGTGTTATACTCATAT+TGG + chr7_2:75059856-75059875 None:intergenic 35.0%
CCAATATGAGTATAACACGT+TGG - chr7_2:75059853-75059872 Msa1076520:intron 35.0%
! ATAGTTTGTGTCGCTATGTA+TGG - chr7_2:75059893-75059912 Msa1076520:intron 35.0%
CAATGGATCAAACTAACAAG+AGG + chr7_2:75059923-75059942 None:intergenic 35.0%
AAGAGTAATAAAGTTGGCGT+TGG + chr7_2:75060443-75060462 None:intergenic 35.0%
CTTTAGCATGCAATAAGGAT+TGG - chr7_2:75060797-75060816 Msa1076520:CDS 35.0%
!! GAAATTGGTGATGACAACAT+TGG - chr7_2:75060819-75060838 Msa1076520:CDS 35.0%
!!! TTTCTATTTTTGGGGAGAAG+TGG - chr7_2:75060874-75060893 Msa1076520:CDS 35.0%
!! AGGATTTGTTGTAGGCTTTA+AGG - chr7_2:75060906-75060925 Msa1076520:CDS 35.0%
!! GGATTTGTTGTAGGCTTTAA+GGG - chr7_2:75060907-75060926 Msa1076520:CDS 35.0%
! AAAGGGTATGTATGAACCTG+TGG + chr7_2:75057563-75057582 None:intergenic 40.0%
GGACTCAGAAACAATAAGAG+TGG - chr7_2:75057645-75057664 Msa1076520:three_prime_UTR 40.0%
GAGTCTTTCAAGAGCTTGAA+TGG + chr7_2:75057742-75057761 None:intergenic 40.0%
CCCACAGTTTGTATTTGCAT+TGG - chr7_2:75057764-75057783 Msa1076520:CDS 40.0%
ACTACCACCCAAATTCACAA+GGG - chr7_2:75057893-75057912 Msa1076520:intron 40.0%
AATTCCCTTGTGAATTTGGG+TGG + chr7_2:75057900-75057919 None:intergenic 40.0%
!! TCTCAGTTTTATACCTCGGA+TGG + chr7_2:75057966-75057985 None:intergenic 40.0%
GTTGCATAATTAGTAGGGGA+AGG + chr7_2:75058073-75058092 None:intergenic 40.0%
!! AAGACTTAGTGGACTCGATT+TGG + chr7_2:75058145-75058164 None:intergenic 40.0%
GGCAGAGCAGAAAATATAGT+CGG - chr7_2:75058236-75058255 Msa1076520:intron 40.0%
CAGAGACATTAACAAACCAG+AGG - chr7_2:75058259-75058278 Msa1076520:intron 40.0%
!! CCACTCGTTTTCTAGTAACA+AGG + chr7_2:75058367-75058386 None:intergenic 40.0%
CCTTGTTACTAGAAAACGAG+TGG - chr7_2:75058364-75058383 Msa1076520:intron 40.0%
AATTGTCACACCAGTTAGTG+GGG + chr7_2:75058431-75058450 None:intergenic 40.0%
CTAATTGTCACACCAGTTAG+TGG + chr7_2:75058433-75058452 None:intergenic 40.0%
CAGATTCTCTTACCTACTCA+TGG + chr7_2:75058670-75058689 None:intergenic 40.0%
CTTAGGTGGGTGAATTATGA+AGG + chr7_2:75058802-75058821 None:intergenic 40.0%
TGACAGAATGTGTCTTAGGT+GGG + chr7_2:75058815-75058834 None:intergenic 40.0%
CGAACCATACAACGATTTAG+AGG + chr7_2:75058858-75058877 None:intergenic 40.0%
!! GGATTTTAGAGACCATATGC+TGG - chr7_2:75058924-75058943 Msa1076520:intron 40.0%
GAACCATACAACGACTTTAG+AGG - chr7_2:75058950-75058969 Msa1076520:intron 40.0%
!! GATCCTCTAAAGTCGTTGTA+TGG + chr7_2:75058956-75058975 None:intergenic 40.0%
! TACAACGACTTTAGAGGATC+TGG - chr7_2:75058956-75058975 Msa1076520:intron 40.0%
TTGGAGGAGACAAATTGTGT+AGG - chr7_2:75059145-75059164 Msa1076520:intron 40.0%
TGGAGGAGACAAATTGTGTA+GGG - chr7_2:75059146-75059165 Msa1076520:intron 40.0%
TTACTTGGTACCATGTTGAC+TGG + chr7_2:75059232-75059251 None:intergenic 40.0%
TATCCCGAAACCATTTCTGT+TGG - chr7_2:75059771-75059790 Msa1076520:intron 40.0%
TCTGCCAACAGAAATGGTTT+CGG + chr7_2:75059778-75059797 None:intergenic 40.0%
ACATGAGGCAGTTTACAATG+AGG + chr7_2:75059823-75059842 None:intergenic 40.0%
GATCATCAATTGATGCTGGA+GGG + chr7_2:75060291-75060310 None:intergenic 40.0%
GATGGATCATCAATTGATGC+TGG + chr7_2:75060295-75060314 None:intergenic 40.0%
! TTTTATATGCCTTGCCTGCA+TGG + chr7_2:75060524-75060543 None:intergenic 40.0%
GGCAAGGCATATAAAAGTCA+TGG - chr7_2:75060528-75060547 Msa1076520:intron 40.0%
TGCTAAGGATCACTATTCTC+CGG + chr7_2:75060767-75060786 None:intergenic 40.0%
! TGGCTGATGAGTATGAGTTT+TGG + chr7_2:75060983-75061002 None:intergenic 40.0%
AATGAGCCTGAGAGAAACTA+TGG + chr7_2:75061003-75061022 None:intergenic 40.0%
CAGATTCTGCTCTTTCCGTT+TGG + chr7_2:75057173-75057192 None:intergenic 45.0%
CAAACGGAAAGAGCAGAATC+TGG - chr7_2:75057171-75057190 Msa1076520:three_prime_UTR 45.0%
AGCACGGCAACTATAGAAGT+TGG + chr7_2:75057418-75057437 None:intergenic 45.0%
CTTGTGAATTTGGGTGGTAG+TGG + chr7_2:75057894-75057913 None:intergenic 45.0%
CACTACCACCCAAATTCACA+AGG - chr7_2:75057892-75057911 Msa1076520:intron 45.0%
ACACTTGCATGGAAACTGAG+TGG - chr7_2:75058311-75058330 Msa1076520:intron 45.0%
ACATATCATGCCCCACTAAC+TGG - chr7_2:75058418-75058437 Msa1076520:intron 45.0%
GTGACAGAATGTGTCTTAGG+TGG + chr7_2:75058816-75058835 None:intergenic 45.0%
GTATGGTTCAGTCCAGCATA+TGG + chr7_2:75058939-75058958 None:intergenic 45.0%
! AATGTAGTGGAGGCTTGTAG+AGG + chr7_2:75059397-75059416 None:intergenic 45.0%
TACAAGCCTCCACTACATTG+TGG - chr7_2:75059398-75059417 Msa1076520:intron 45.0%
ACCCCTTGAATATACCACTG+AGG - chr7_2:75059456-75059475 Msa1076520:intron 45.0%
CCCTCAGTGGTATATTCAAG+GGG + chr7_2:75059460-75059479 None:intergenic 45.0%
CCCCTTGAATATACCACTGA+GGG - chr7_2:75059457-75059476 Msa1076520:intron 45.0%
CCCCTCAGTGGTATATTCAA+GGG + chr7_2:75059461-75059480 None:intergenic 45.0%
CCCTTGAATATACCACTGAG+GGG - chr7_2:75059458-75059477 Msa1076520:intron 45.0%
CCTTGAATATACCACTGAGG+GGG - chr7_2:75059459-75059478 Msa1076520:intron 45.0%
CTGCCAACAGAAATGGTTTC+GGG + chr7_2:75059777-75059796 None:intergenic 45.0%
GAGGAATGTGCGGAAAACAA+GGG + chr7_2:75059804-75059823 None:intergenic 45.0%
TGAGGAATGTGCGGAAAACA+AGG + chr7_2:75059805-75059824 None:intergenic 45.0%
GGATCATCAATTGATGCTGG+AGG + chr7_2:75060292-75060311 None:intergenic 45.0%
TAGCATGGTTGCTTCAGTGA+TGG + chr7_2:75060313-75060332 None:intergenic 45.0%
GTTCATATACCATGCAGGCA+AGG - chr7_2:75060512-75060531 Msa1076520:intron 45.0%
TGGAACAGACTGTCTCTAGA+CGG - chr7_2:75060548-75060567 Msa1076520:intron 45.0%
GGGAGAAGTGGTTTGACTAA+AGG - chr7_2:75060886-75060905 Msa1076520:CDS 45.0%
GCAGCATACGAAATGTGTGT+GGG + chr7_2:75060961-75060980 None:intergenic 45.0%
CATCAGCCATAGTTTCTCTC+AGG - chr7_2:75060994-75061013 Msa1076520:CDS 45.0%
!! AATAATATTAGTATATAATA+GGG + chr7_2:75061173-75061192 None:intergenic 5.0%
!! AAATAATATTAGTATATAAT+AGG + chr7_2:75061174-75061193 None:intergenic 5.0%
!! TATTATATACTAATATTATT+TGG - chr7_2:75061173-75061192 Msa1076520:five_prime_UTR 5.0%
AAAACCGTTCAAGCTGCCAC+AGG - chr7_2:75057544-75057563 Msa1076520:three_prime_UTR 50.0%
TGAACCTGTGGCAGCTTGAA+CGG + chr7_2:75057551-75057570 None:intergenic 50.0%
!! TGGCTATGAGAGCCTTGTTG+AGG - chr7_2:75057665-75057684 Msa1076520:three_prime_UTR 50.0%
CCATAGTAGCTGCCTCAACA+AGG + chr7_2:75057680-75057699 None:intergenic 50.0%
CCTTGTTGAGGCAGCTACTA+TGG - chr7_2:75057677-75057696 Msa1076520:three_prime_UTR 50.0%
! TTGTATGGTTCGGCGCCAAT+AGG - chr7_2:75058866-75058885 Msa1076520:intron 50.0%
TCTGGGTATGCCAGTCAACA+TGG - chr7_2:75059219-75059238 Msa1076520:intron 50.0%
AAGCCTCCACTACATTGTGG+AGG - chr7_2:75059401-75059420 Msa1076520:intron 50.0%
TGACCTCCACAATGTAGTGG+AGG + chr7_2:75059407-75059426 None:intergenic 50.0%
TGCTGACCTCCACAATGTAG+TGG + chr7_2:75059410-75059429 None:intergenic 50.0%
CCCCCTCAGTGGTATATTCA+AGG + chr7_2:75059462-75059481 None:intergenic 50.0%
TTGCAAATTTGCCCCCTCAG+TGG + chr7_2:75059473-75059492 None:intergenic 50.0%
AGGGATCACGCCTCATACAT+TGG + chr7_2:75059634-75059653 None:intergenic 50.0%
GAATGTGCGGAAAACAAGGG+TGG + chr7_2:75059801-75059820 None:intergenic 50.0%
CAGACTGTCTCTAGACGGTA+TGG - chr7_2:75060553-75060572 Msa1076520:intron 50.0%
CTGTCTCTAGACGGTATGGA+TGG - chr7_2:75060557-75060576 Msa1076520:intron 50.0%
!! TGTAGGCTTTAAGGGCAGCA+AGG - chr7_2:75060915-75060934 Msa1076520:CDS 50.0%
GCATACGAAATGTGTGTGGG+AGG + chr7_2:75060958-75060977 None:intergenic 50.0%
GGCAGCATACGAAATGTGTG+TGG + chr7_2:75060962-75060981 None:intergenic 50.0%
TTGGTTACTTGGGCCATCCG+AGG - chr7_2:75057950-75057969 Msa1076520:intron 55.0%
GGGTGGTCTGCCAACAGAAA+TGG + chr7_2:75059784-75059803 None:intergenic 55.0%
!! GGCTTTAAGGGCAGCAAGGA+TGG - chr7_2:75060919-75060938 Msa1076520:CDS 55.0%
AGGAGAGTGGCGTAGCCGTA+AGG + chr7_2:75059008-75059027 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 75057151 75061198 75057151 ID=Msa1076520;Name=Msa1076520
chr7_2 mRNA 75057151 75061198 75057151 ID=Msa1076520-mRNA-1;Parent=Msa1076520;Name=Msa1076520-mRNA-1;_AED=0.14;_eAED=0.14;_QI=180|0.75|1|1|0.75|0.6|5|571|177
chr7_2 exon 75057151 75057299 75057151 ID=Msa1076520-mRNA-1:exon:17784;Parent=Msa1076520-mRNA-1
chr7_2 exon 75057333 75057820 75057333 ID=Msa1076520-mRNA-1:exon:17783;Parent=Msa1076520-mRNA-1
chr7_2 exon 75060378 75060470 75060378 ID=Msa1076520-mRNA-1:exon:17782;Parent=Msa1076520-mRNA-1
chr7_2 exon 75060564 75060703 75060564 ID=Msa1076520-mRNA-1:exon:17781;Parent=Msa1076520-mRNA-1
chr7_2 exon 75060784 75061198 75060784 ID=Msa1076520-mRNA-1:exon:17780;Parent=Msa1076520-mRNA-1
chr7_2 five_prime_UTR 75061019 75061198 75061019 ID=Msa1076520-mRNA-1:five_prime_utr;Parent=Msa1076520-mRNA-1
chr7_2 CDS 75060784 75061018 75060784 ID=Msa1076520-mRNA-1:cds;Parent=Msa1076520-mRNA-1
chr7_2 CDS 75060564 75060703 75060564 ID=Msa1076520-mRNA-1:cds;Parent=Msa1076520-mRNA-1
chr7_2 CDS 75060378 75060470 75060378 ID=Msa1076520-mRNA-1:cds;Parent=Msa1076520-mRNA-1
chr7_2 CDS 75057755 75057820 75057755 ID=Msa1076520-mRNA-1:cds;Parent=Msa1076520-mRNA-1
chr7_2 three_prime_UTR 75057333 75057754 75057333 ID=Msa1076520-mRNA-1:three_prime_utr;Parent=Msa1076520-mRNA-1
chr7_2 three_prime_UTR 75057151 75057299 75057151 ID=Msa1076520-mRNA-1:three_prime_utr;Parent=Msa1076520-mRNA-1
Gene Sequence

>Msa1076520

ATGGAAACTAATGTTTTCAGGCAGAACAGAATTTCAACACTAACTTCAACTCACTACAACCTCATCAAACATAAACCTCAACATCCAACTTCTATAGTTGCCGTGCTTAGAAAGCCTTCAAATCATGACATTACAGAAGAAACAGCAAAAAGTACTACTACTAATGTCTACAAAGATAACTGGTTTGATCTCATAGCAATAAACCATTTATCAAAAACCGTTCAAGCTGCCACAGGACTCAGAAACAATAAGAGTGGCTATGAGAGCCTTGTTGAGGCAGCTACTATGGCAAAACAAAAATTTAATGCTATTCAACAGCAAGATGTTACCATTCAAGCTCTTGAAAGACTCTTCCCACAGTTTGTATTTGCATTGATAAAGAAACAGCCACTACCACCCAAATTCACAAGGGAATTTTTTGCAATTATCACCACTATGTTCTTTACTTGGTTACTTGGGCCATCCGAGGCAAGGCATATAAAAGTCATGGAACAGACTGTCTCTAGACGGTATGGATGGAAGAAGTCATTTTAG

Protein sequence

>Msa1076520

METNVFRQNRISTLTSTHYNLIKHKPQHPTSIVAVLRKPSNHDITEETAKSTTTNVYKDNWFDLIAINHLSKTVQAATGLRNNKSGYESLVEAATMAKQKFNAIQQQDVTIQALERLFPQFVFALIKKQPLPPKFTREFFAIITTMFFTWLLGPSEARHIKVMEQTVSRRYGWKKSF*