AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0748330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748330 MtrunA17_Chr7g0269591 98.880 625 7 0 1 625 1 625 0.0 1291
Msa0748330 MtrunA17_Chr8g0344131 38.810 353 189 8 146 497 221 547 3.74e-63 223
Msa0748330 MtrunA17_Chr4g0069291 30.395 329 199 7 175 492 120 429 3.23e-38 149
Msa0748330 MtrunA17_Chr5g0395711 37.054 224 129 5 126 339 108 329 4.49e-35 142
Msa0748330 MtrunA17_Chr5g0395711 36.364 121 71 2 377 497 451 565 6.66e-16 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748330 AT4G02260.4 73.291 629 162 5 1 625 1 627 0.0 939
Msa0748330 AT4G02260.2 73.291 629 162 5 1 625 1 627 0.0 938
Msa0748330 AT4G02260.3 73.291 629 162 5 1 625 1 627 0.0 938
Msa0748330 AT4G02260.1 73.175 630 162 6 1 625 1 628 0.0 934
Msa0748330 AT1G54130.1 38.592 355 191 8 144 497 211 539 4.49e-64 225
Msa0748330 AT3G14050.1 39.045 356 184 9 146 497 209 535 7.40e-64 224
Msa0748330 AT3G17470.3 31.288 326 198 11 180 495 122 431 3.08e-37 145
Msa0748330 AT3G17470.1 30.532 357 213 13 180 526 122 453 6.09e-37 146
Msa0748330 AT3G17470.2 30.532 357 213 13 180 526 137 468 6.61e-37 146

Find 243 sgRNAs with CRISPR-Local

Find 588 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAGGACTTCTTTATATTT+TGG 0.117821 5_2:-1499449 None:intergenic
TGAAGGAAATTTAGAAAATT+TGG 0.135903 5_2:+1500087 Msa0748330:three_prime_UTR
GGACCTTCGGCAAATGTTTC+TGG 0.140517 5_2:+1494152 Msa0748330:CDS
ACTGCCTGCTGCCGGCTTAT+TGG 0.169000 5_2:-1500474 None:intergenic
ACATTTATATGTCTAAATTT+TGG 0.179818 5_2:+1500415 Msa0748330:three_prime_UTR
GCAGATTTGCTATCATGTTC+TGG 0.190657 5_2:+1496828 Msa0748330:intron
TTATATACATGGTGAATTCT+AGG 0.196426 5_2:+1500749 Msa0748330:three_prime_UTR
CTGCCTGCTGCCGGCTTATT+GGG 0.208464 5_2:-1500473 None:intergenic
CAAAGCAAACCTGTGCAATT+TGG 0.221140 5_2:-1496554 None:intergenic
TCCTCTGTTTCTCTCAATTA+TGG 0.228332 5_2:+1492130 Msa0748330:exon
CACTGTTACAAGAGATCTTC+TGG 0.241677 5_2:+1497656 Msa0748330:CDS
GAGAGGATAGAGGAGGAATT+TGG 0.243763 5_2:+1493908 Msa0748330:CDS
TGGACTAACTCCAGTTCTTT+AGG 0.245830 5_2:-1493486 None:intergenic
AGATCAAATACCGGGTGTTT+TGG 0.268009 5_2:+1500233 Msa0748330:three_prime_UTR
CCAGTAGCTCCAAACATAAA+AGG 0.272058 5_2:+1499228 Msa0748330:three_prime_UTR
TATATGATACACACTGAAAT+TGG 0.278187 5_2:+1497892 Msa0748330:CDS
TTCACCTTTGCATAATCTTC+AGG 0.279113 5_2:-1495989 None:intergenic
GTTTGTTATCTGTCTTTCTT+TGG 0.279933 5_2:+1491938 Msa0748330:five_prime_UTR
GCTTGGGATGTATCAAATTA+AGG 0.281559 5_2:+1495730 Msa0748330:CDS
CTCCTTTGGCAAAGTTGCTT+GGG 0.299059 5_2:+1495714 Msa0748330:CDS
CTGTGTGTAAAGAGCCTTAC+AGG 0.317355 5_2:+1496303 Msa0748330:CDS
GTTGAGGTTGCACGGATTCT+TGG 0.319585 5_2:+1493703 Msa0748330:CDS
CTTTCTCATGTTCTTTGAAT+AGG 0.319692 5_2:-1496027 None:intergenic
CAGATTTGCTATCATGTTCT+GGG 0.322566 5_2:+1496829 Msa0748330:intron
GAAGATGGTTATTGCGGTTA+TGG 0.323552 5_2:-1492032 None:intergenic
TACATACAGATCTAGGAATA+GGG 0.332916 5_2:-1496873 None:intergenic
CCTCCATAACCTATCATTCA+TGG 0.340153 5_2:+1492087 Msa0748330:five_prime_UTR
ATTACAGGTATTTGCTCCTT+TGG 0.341930 5_2:+1495700 Msa0748330:CDS
GCTCCTTTGGCAAAGTTGCT+TGG 0.345703 5_2:+1495713 Msa0748330:CDS
AGAAAAGAGTGATAGGATAA+AGG 0.346272 5_2:+1500544 Msa0748330:three_prime_UTR
TTGTGTGGACCGAGCGTAAC+AGG 0.346600 5_2:+1491890 None:intergenic
ATACATACAGATCTAGGAAT+AGG 0.350804 5_2:-1496874 None:intergenic
GCCTCGTGGCACAATATAGA+AGG 0.351249 5_2:+1499503 Msa0748330:three_prime_UTR
AGTGGGAGAGAATTCGTTAC+TGG 0.356793 5_2:+1497320 Msa0748330:CDS
AGCTTACCGTAAAAGCATTA+TGG 0.356855 5_2:-1493506 None:intergenic
TTCTTGAATGCTAGATGATT+TGG 0.366759 5_2:+1500304 Msa0748330:three_prime_UTR
CATTTGTCCAGGAACTTGAT+TGG 0.368685 5_2:+1493825 Msa0748330:intron
CAAAGCCGTGCGTTGGGGTT+GGG 0.369858 5_2:+1496688 Msa0748330:CDS
ATTCCATGAATGATAGGTTA+TGG 0.371415 5_2:-1492090 None:intergenic
TGTACCTCCCACAAACTTCC+AGG 0.375552 5_2:-1493314 None:intergenic
ATTGCAACCCCTAAACCTAA+TGG 0.376245 5_2:+1497022 Msa0748330:CDS
ATTGTTAACTTGAATCATAT+TGG 0.380037 5_2:-1499426 None:intergenic
CATTGCAATGGAGACATTAC+AGG 0.381847 5_2:+1495685 Msa0748330:CDS
GGCTTATTGGGTTAGTGAGT+TGG 0.383188 5_2:-1500461 None:intergenic
TTAAACCAAAGCCGTGCGTT+GGG 0.385297 5_2:+1496682 Msa0748330:CDS
CATGTATATAAAAGAAGAAA+TGG 0.385385 5_2:-1500737 None:intergenic
CAATGATTACAGATCAGTTC+TGG 0.385820 5_2:+1500365 Msa0748330:three_prime_UTR
TGGGGTTGATCCATGGAATC+TGG 0.390644 5_2:+1496848 Msa0748330:CDS
GGTCTAAGAATTGATCATCT+TGG 0.398616 5_2:-1496253 None:intergenic
GATTGAATTCCATGAATGAT+AGG 0.398665 5_2:-1492096 None:intergenic
ACACTTCACGAGGGATTCTC+TGG 0.400032 5_2:+1493206 Msa0748330:CDS
TATGTTCAGGCTTGAAATAC+AGG 0.403830 5_2:+1497090 Msa0748330:CDS
GTAGATTAGAACAGAAGAAA+TGG 0.405177 5_2:+1497262 Msa0748330:intron
CCAACCCCAACGCACGGCTT+TGG 0.406391 5_2:-1496687 None:intergenic
ATGGCAGTTGTCTTGTTCTT+CGG 0.412219 5_2:+1493259 Msa0748330:CDS
CATGAGCTCTAGGGAATTTG+TGG 0.417115 5_2:+1497632 Msa0748330:CDS
AAATCTCCTAGGGTTCTTAC+CGG 0.417218 5_2:+1492538 Msa0748330:CDS
TATATACATGGTGAATTCTA+GGG 0.418596 5_2:+1500750 Msa0748330:three_prime_UTR
ACATATGCCTCCACATAAAC+AGG 0.418695 5_2:+1494362 Msa0748330:CDS
GTGTGAATGTATGCAATTCT+TGG 0.422183 5_2:+1492464 Msa0748330:CDS
CTCAATTGACTGCCTGCTGC+CGG 0.422716 5_2:-1500482 None:intergenic
ACCAGCTGTGGACTGCATAA+AGG 0.423090 5_2:-1496711 None:intergenic
AACGACCAGGCTGAGGTTGA+TGG 0.426492 5_2:+1500031 Msa0748330:intron
TGTATATAGAAAAGAGTGAT+AGG 0.427510 5_2:+1500537 Msa0748330:three_prime_UTR
GGACGAAACTGTAGTGAGTA+TGG 0.428483 5_2:-1500343 None:intergenic
GGCATTGCAGCTCACTATAG+TGG 0.428991 5_2:+1497302 Msa0748330:CDS
ATTTGTCCAGGAACTTGATT+GGG 0.429628 5_2:+1493826 Msa0748330:intron
TGTGACGCCAAGTGCTTTGT+CGG 0.430385 5_2:-1493186 None:intergenic
CAGAACTGATCTGTAATCAT+TGG 0.430971 5_2:-1500364 None:intergenic
CTAGATTTGCATCTAGAGAA+TGG 0.434783 5_2:+1493240 Msa0748330:CDS
CAGTAGCTCCAAACATAAAA+GGG 0.435513 5_2:+1499229 Msa0748330:three_prime_UTR
GTATCTTCCTCCTAAAGAAC+TGG 0.435659 5_2:+1493476 Msa0748330:CDS
AGAATCCGTGCAACCTCAAC+CGG 0.436241 5_2:-1493700 None:intergenic
TCCCAACTAGGTGTCAAAGC+TGG 0.436553 5_2:+1494077 Msa0748330:intron
AACAATTATTTCAGGCATGA+TGG 0.437402 5_2:+1499841 Msa0748330:intron
GATTGGGAGTCAATTGCTGC+TGG 0.437948 5_2:+1493842 Msa0748330:CDS
TTGCAACCCCTAAACCTAAT+GGG 0.442273 5_2:+1497023 Msa0748330:CDS
CAAGCACTTTATCACACGTT+TGG 0.445614 5_2:-1500643 None:intergenic
GCTTCTGCACCTTTCATGTC+AGG 0.448291 5_2:+1492152 Msa0748330:CDS
TCCTGCCAGGTTTAGAAAGT+TGG 0.448380 5_2:+1499465 Msa0748330:three_prime_UTR
AACAAAATACATACAGATCT+AGG 0.449095 5_2:-1496880 None:intergenic
GCCTTTATGCAGTCCACAGC+TGG 0.449575 5_2:+1496710 Msa0748330:CDS
CCAAAGCCGTGCGTTGGGGT+TGG 0.452445 5_2:+1496687 Msa0748330:CDS
GAGAGAATTCGTTACTGGCT+TGG 0.454991 5_2:+1497325 Msa0748330:CDS
CTTCATCATTCATCCGGTTG+AGG 0.455435 5_2:+1493687 Msa0748330:CDS
TGATAGGTTATGGAGGAGAA+GGG 0.455820 5_2:-1492080 None:intergenic
GTTATGTTATTTCAAGTTGA+AGG 0.457526 5_2:+1500070 Msa0748330:three_prime_UTR
GCTGAGGTTGATGGCGGAAG+GGG 0.457562 5_2:+1500040 Msa0748330:three_prime_UTR
ATGTAAATTTGAAGGGCAAA+GGG 0.462707 5_2:+1499375 Msa0748330:three_prime_UTR
ATGGAAATTACCTGTTTATG+TGG 0.465464 5_2:-1494372 None:intergenic
TCTTGGAGAGGGGATGGAAA+TGG 0.467748 5_2:+1492481 Msa0748330:CDS
CCCAACTAGGTGTCAAAGCT+GGG 0.468219 5_2:+1494078 Msa0748330:intron
ATGTGAAAGCAGAGGACCTT+CGG 0.473982 5_2:+1494139 Msa0748330:CDS
AGGCTGAGGTTGATGGCGGA+AGG 0.474494 5_2:+1500038 Msa0748330:intron
ATGATAGGTTATGGAGGAGA+AGG 0.478020 5_2:-1492081 None:intergenic
TCTAATTGCATCAGGACCTT+AGG 0.478487 5_2:+1493442 Msa0748330:intron
AGACCTTATGACAGTTAAAA+CGG 0.479370 5_2:+1496271 Msa0748330:CDS
CATGTGCGTCGAAATCTCCT+AGG 0.479666 5_2:+1492527 Msa0748330:CDS
ATCCACTGTTACCTCTCCAC+TGG 0.480367 5_2:-1497703 None:intergenic
ATTTACACAAGGAGCTTGCT+AGG 0.482615 5_2:+1500595 Msa0748330:three_prime_UTR
CGTGCATCATGTAAATTTGA+AGG 0.483447 5_2:+1499367 Msa0748330:three_prime_UTR
TTGTTGGCAACATGAGCTCT+AGG 0.486743 5_2:+1497622 Msa0748330:CDS
ACTGTCCTTCAGAGTAAGAA+TGG 0.489568 5_2:+1499302 Msa0748330:three_prime_UTR
GATCAGGAAGCTTACCTCTT+CGG 0.489957 5_2:-1499562 None:intergenic
CTCTAGAGTAGATCAAATAC+CGG 0.491186 5_2:+1500224 Msa0748330:three_prime_UTR
GAAGAAGAAGAGAGTGAGAG+TGG 0.495102 5_2:-1492000 None:intergenic
CAAAGGGGACATGATGCTGC+AGG 0.497067 5_2:+1499391 Msa0748330:three_prime_UTR
GCTTGGACACCCAAGGTCAA+TGG 0.497685 5_2:+1499329 Msa0748330:three_prime_UTR
GGCTGAGGTTGATGGCGGAA+GGG 0.499777 5_2:+1500039 Msa0748330:intron
GAATTCGTTACTGGCTTGGT+TGG 0.500544 5_2:+1497329 Msa0748330:CDS
GAAGGGGAAGAGAATTGAAT+CGG 0.501625 5_2:-1492063 None:intergenic
CATGTTCTGGGGTTGATCCA+TGG 0.504046 5_2:+1496841 Msa0748330:CDS
GTGCTTGGTATAATGAGGAT+AGG 0.504068 5_2:+1500659 Msa0748330:three_prime_UTR
CTTGAATCATATTGGCGACA+TGG 0.505746 5_2:-1499418 None:intergenic
ACTTTCTCAGTGATTCTGAC+GGG 0.507221 5_2:+1499174 Msa0748330:three_prime_UTR
AGAAGCGAGTGAGTTGAGAG+AGG 0.509407 5_2:-1491967 None:intergenic
CTCAACCGGATGAATGATGA+AGG 0.509670 5_2:-1493686 None:intergenic
CGAACCCTTCATCATTCATC+CGG 0.509821 5_2:+1493681 Msa0748330:CDS
GAGTGGCAAGAAGAGTTTGT+TGG 0.510210 5_2:+1497606 Msa0748330:CDS
AGAGTAAGAATGGAAGTGCT+TGG 0.510899 5_2:+1499312 Msa0748330:three_prime_UTR
GGTTGATGGCGGAAGGGGAA+TGG 0.511538 5_2:+1500045 Msa0748330:three_prime_UTR
TACCGGCTTTCTTGCGAGCA+CGG 0.511790 5_2:+1492555 Msa0748330:CDS
TTCATCCGGTTGAGGTTGCA+CGG 0.513436 5_2:+1493695 Msa0748330:CDS
GGCTGAGGTCGCTACAGCAT+TGG 0.515456 5_2:+1499862 Msa0748330:three_prime_UTR
TTATCGTCAAATTAGCAGAC+AGG 0.517261 5_2:+1494316 Msa0748330:CDS
ATTAAACCAAAGCCGTGCGT+TGG 0.519871 5_2:+1496681 Msa0748330:CDS
TGCAATTCTTGGAGAGGGGA+TGG 0.519916 5_2:+1492475 Msa0748330:CDS
TAACCCAATAAGCCGGCAGC+AGG 0.520630 5_2:+1500470 Msa0748330:three_prime_UTR
GATAGGTTATGGAGGAGAAG+GGG 0.522033 5_2:-1492079 None:intergenic
TGAGATTAACCAAATTGCAC+AGG 0.524101 5_2:+1496545 Msa0748330:CDS
TCATATTCCGACAAAGCACT+TGG 0.525417 5_2:+1493179 Msa0748330:CDS
AAATATAAAGAAGTCCTGCC+AGG 0.526449 5_2:+1499452 Msa0748330:three_prime_UTR
GATTTGGTTGCAGTTGCACT+AGG 0.526451 5_2:+1500320 Msa0748330:three_prime_UTR
GATGGTCTACTGGCTGTAGT+TGG 0.526752 5_2:+1500256 Msa0748330:three_prime_UTR
CATTGTGGAAGGAGAGACTA+AGG 0.527478 5_2:+1493946 Msa0748330:CDS
TGCTTGGTATAATGAGGATA+GGG 0.528040 5_2:+1500660 Msa0748330:three_prime_UTR
GCATTTGCAAGCACTCGTGC+AGG 0.528305 5_2:-1498067 None:intergenic
GAAGCGAGTGAGTTGAGAGA+GGG 0.528650 5_2:-1491966 None:intergenic
GAATCGGAAAATCGAGAAGA+TGG 0.528808 5_2:-1492047 None:intergenic
GAGTGAGTTGAGAGAGGGTG+AGG 0.528895 5_2:-1491961 None:intergenic
CTGTAGTTGGCCAAGCCTGA+TGG 0.529497 5_2:+1500269 Msa0748330:three_prime_UTR
CAACAAGATGGTAGCTGCAA+AGG 0.530841 5_2:+1497915 Msa0748330:CDS
GTTTCGTGGATTAACCTGTA+AGG 0.534166 5_2:-1496317 None:intergenic
CATGTAAATTTGAAGGGCAA+AGG 0.535165 5_2:+1499374 Msa0748330:three_prime_UTR
CTCATGTTCTTTGAATAGGT+CGG 0.536108 5_2:-1496023 None:intergenic
GAATAGGGGTCCAGATTCCA+TGG 0.537999 5_2:-1496858 None:intergenic
TGCATACAACAGATAACCAT+TGG 0.538972 5_2:-1499535 None:intergenic
GCCAACTTTCTAAACCTGGC+AGG 0.545096 5_2:-1499466 None:intergenic
TGCAAGACACAAAATAATGA+AGG 0.547606 5_2:+1498975 Msa0748330:exon
GCTTGCCAACTTTCTAAACC+TGG 0.549616 5_2:-1499470 None:intergenic
AGCCGTGCTCGCAAGAAAGC+CGG 0.550935 5_2:-1492557 None:intergenic
TTTGTACCCATTAGGTTTAG+GGG 0.551930 5_2:-1497029 None:intergenic
TATTTCAGGCATGATGGCTG+AGG 0.552186 5_2:+1499847 Msa0748330:intron
AGAAAGCCGGTAAGAACCCT+AGG 0.552414 5_2:-1492544 None:intergenic
GATACGAGATCACGGGCCTA+AGG 0.552517 5_2:-1493458 None:intergenic
ACTGTTACAAGAGATCTTCT+GGG 0.552683 5_2:+1497657 Msa0748330:CDS
CACTTCCATTCTTACTCTGA+AGG 0.552893 5_2:-1499307 None:intergenic
CAAACGTGTGATAAAGTGCT+TGG 0.554082 5_2:+1500644 Msa0748330:three_prime_UTR
TACAACAGATAACCATTGGA+TGG 0.554913 5_2:-1499531 None:intergenic
AATAGAAAACATACTGGGTG+AGG 0.556986 5_2:-1498132 None:intergenic
GCGTACTCTGAGTGCAATGT+TGG 0.561487 5_2:-1497408 None:intergenic
CACTGAAATTGGCAACAAGA+TGG 0.562829 5_2:+1497903 Msa0748330:CDS
ACTTCCAGGGGAAAACTCGC+TGG 0.564635 5_2:-1493300 None:intergenic
AATGGATTTGATAGCTGAGA+GGG 0.567318 5_2:+1497280 Msa0748330:CDS
GGGTAAGTGGTTACCAGCTG+TGG 0.569013 5_2:-1496723 None:intergenic
GACTTTCTCAGTGATTCTGA+CGG 0.576627 5_2:+1499173 Msa0748330:three_prime_UTR
TTTCAGAAACTCAAAACTGA+AGG 0.578494 5_2:+1500511 Msa0748330:three_prime_UTR
TGCTGGATTACTTCATGACA+CGG 0.579642 5_2:+1493859 Msa0748330:CDS
GAAATTACCTGTTTATGTGG+AGG 0.581208 5_2:-1494369 None:intergenic
TAAACCAAAGCCGTGCGTTG+GGG 0.582851 5_2:+1496683 Msa0748330:CDS
ATGTATGCAATTCTTGGAGA+GGG 0.584331 5_2:+1492470 Msa0748330:CDS
ATGAGATATCCTGTTACGCT+CGG 0.584605 5_2:-1491899 None:intergenic
TGTTGGCAACATGAGCTCTA+GGG 0.586013 5_2:+1497623 Msa0748330:CDS
GTCTTTGTATTTACACCCAG+TGG 0.587156 5_2:+1497687 Msa0748330:CDS
ACTCACCACACAAGAACATA+CGG 0.588943 5_2:-1499900 None:intergenic
TTCCCCTGGAAGTTTGTGGG+AGG 0.589656 5_2:+1493310 Msa0748330:CDS
GCCATAATTGAGAGAAACAG+AGG 0.590903 5_2:-1492131 None:intergenic
GCTTGCAAATGCAGAAGTTG+TGG 0.591891 5_2:+1498078 Msa0748330:CDS
AATCGAGAAGATGGTTATTG+CGG 0.592306 5_2:-1492038 None:intergenic
TGTACAGAATAGCATTGCAA+TGG 0.595760 5_2:+1495673 Msa0748330:intron
AACTCACTAACCCAATAAGC+CGG 0.596525 5_2:+1500463 Msa0748330:three_prime_UTR
GCATTGCAGCTCACTATAGT+GGG 0.596921 5_2:+1497303 Msa0748330:CDS
AAAGGCCCAACCCCAACGCA+CGG 0.597406 5_2:-1496693 None:intergenic
GTACCTCCCACAAACTTCCA+GGG 0.597986 5_2:-1493313 None:intergenic
TTAGGTTTAATGCAGGTCAA+CGG 0.603196 5_2:+1498031 Msa0748330:intron
ACATACAGATCTAGGAATAG+GGG 0.604280 5_2:-1496872 None:intergenic
GGAGGAAGATACGAGATCAC+GGG 0.606559 5_2:-1493465 None:intergenic
TAGAAGGGCATTCCATCCAA+TGG 0.607450 5_2:+1499519 Msa0748330:three_prime_UTR
AGGAGGAAGATACGAGATCA+CGG 0.607622 5_2:-1493466 None:intergenic
TATAAATGTCTGCGCTTCTG+CGG 0.609744 5_2:-1500401 None:intergenic
ATGTGCGTCGAAATCTCCTA+GGG 0.610172 5_2:+1492528 Msa0748330:CDS
GTGCATCATGTAAATTTGAA+GGG 0.610778 5_2:+1499368 Msa0748330:three_prime_UTR
TGGAAGTGCTTGGACACCCA+AGG 0.611288 5_2:+1499322 Msa0748330:three_prime_UTR
TAGATTAAGAATCTTCCTCA+AGG 0.612482 5_2:+1497847 Msa0748330:intron
AATGTTTCTGGCTATGACAG+AGG 0.612713 5_2:+1494164 Msa0748330:CDS
TGTATTTACACCCAGTGGAG+AGG 0.615293 5_2:+1497692 Msa0748330:CDS
ACTAACTCCAGTTCTTTAGG+AGG 0.618244 5_2:-1493483 None:intergenic
ATCCCAAGCAACTTTGCCAA+AGG 0.618298 5_2:-1495716 None:intergenic
CCTCGTGGCACAATATAGAA+GGG 0.619462 5_2:+1499504 Msa0748330:three_prime_UTR
AAAGGGGACATGATGCTGCA+GGG 0.620819 5_2:+1499392 Msa0748330:three_prime_UTR
AAACTCGCTGGCAACGTCCG+AGG 0.623661 5_2:-1493288 None:intergenic
GAAAATATTATTGAACGGTG+TGG 0.624304 5_2:+1499253 Msa0748330:three_prime_UTR
TCCACTGTTACCTCTCCACT+GGG 0.626056 5_2:-1497702 None:intergenic
GGCTCAATGCTATTAGAGAG+TGG 0.627954 5_2:+1497589 Msa0748330:CDS
AGATTTGCTATCATGTTCTG+GGG 0.632012 5_2:+1496830 Msa0748330:intron
ACAGTGCGTCACATTGTGGA+AGG 0.639089 5_2:+1493935 Msa0748330:CDS
CCATGAATGATAGGTTATGG+AGG 0.640323 5_2:-1492087 None:intergenic
TTCTGTAGTGATATCAGCAG+CGG 0.640815 5_2:-1499141 None:intergenic
TGCTACAGTGCGTCACATTG+TGG 0.642347 5_2:+1493931 Msa0748330:CDS
CTTTCTCAGTGATTCTGACG+GGG 0.642676 5_2:+1499175 Msa0748330:three_prime_UTR
TGTAAATTTGAAGGGCAAAG+GGG 0.645718 5_2:+1499376 Msa0748330:three_prime_UTR
ACATACGGCTATGTCTGAAG+TGG 0.647289 5_2:-1499885 None:intergenic
AAATCCTGAAGATTATGCAA+AGG 0.647444 5_2:+1495985 Msa0748330:CDS
ATAAAGTGCTTGGTATAATG+AGG 0.648471 5_2:+1500654 Msa0748330:three_prime_UTR
AGTAGCTCCAAACATAAAAG+GGG 0.650201 5_2:+1499230 Msa0748330:three_prime_UTR
CCCTTCTATATTGTGCCACG+AGG 0.652703 5_2:-1499504 None:intergenic
TCTAGCATTCAAGAACGCCA+TGG 0.653651 5_2:-1500296 None:intergenic
TCAATCACAGTAGCACCTTG+AGG 0.657313 5_2:-1497862 None:intergenic
TCTAGAGTAGATCAAATACC+GGG 0.659498 5_2:+1500225 Msa0748330:three_prime_UTR
GTTGTATGCATAGACCGAAG+AGG 0.660812 5_2:+1499548 Msa0748330:three_prime_UTR
TAGCCAGAAACATTTGCCGA+AGG 0.661863 5_2:-1494155 None:intergenic
GACCAGGCTGAGGTTGATGG+CGG 0.663709 5_2:+1500034 Msa0748330:intron
ACTTGGCGTCACACTTCACG+AGG 0.666144 5_2:+1493196 Msa0748330:CDS
GTAGACCATCCCAAAACACC+CGG 0.672266 5_2:-1500243 None:intergenic
TGTTCAAGATGTGAAAGCAG+AGG 0.675037 5_2:+1494131 Msa0748330:CDS
TACCTCCCACAAACTTCCAG+GGG 0.676489 5_2:-1493312 None:intergenic
ACTTGTGCAGCATTTACACA+AGG 0.677794 5_2:+1500584 Msa0748330:three_prime_UTR
GTTTCTGGCTATGACAGAGG+AGG 0.682217 5_2:+1494167 Msa0748330:CDS
CATAGCCGTATGTTCTTGTG+TGG 0.682854 5_2:+1499895 Msa0748330:three_prime_UTR
AAATGGATTTGATAGCTGAG+AGG 0.682911 5_2:+1497279 Msa0748330:CDS
GTTGGAAGTGCTGTGCCCAG+TGG 0.683907 5_2:+1497347 Msa0748330:CDS
CCAACTAGGTGTCAAAGCTG+GGG 0.684172 5_2:+1494079 Msa0748330:intron
CCAAGCCTGATGGAAAACCA+TGG 0.686242 5_2:+1500279 Msa0748330:three_prime_UTR
TCAACCGGATGAATGATGAA+GGG 0.689425 5_2:-1493685 None:intergenic
GTAGCTCCAAACATAAAAGG+GGG 0.697648 5_2:+1499231 Msa0748330:three_prime_UTR
GGTTGCAACATGCTAAAACA+CGG 0.702738 5_2:+1498950 Msa0748330:CDS
AATGTATGCAATTCTTGGAG+AGG 0.707152 5_2:+1492469 Msa0748330:CDS
TTGGCATTTAAAGCTCACGA+TGG 0.719107 5_2:+1493640 Msa0748330:CDS
CTTGGCGTCACACTTCACGA+GGG 0.722443 5_2:+1493197 Msa0748330:CDS
ATGGATTTGATAGCTGAGAG+GGG 0.725531 5_2:+1497281 Msa0748330:CDS
TGTATGCAATTCTTGGAGAG+GGG 0.729175 5_2:+1492471 Msa0748330:CDS
GATGGTCAGAAAAGACGCAG+CGG 0.742743 5_2:+1493658 Msa0748330:CDS
AAGCCCATAAAATTGCCTCG+TGG 0.756087 5_2:+1499489 Msa0748330:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACAATATATTTTTTTGTAT+AGG + chr5_2:1492768-1492787 Msa0748330:intron 10.0%
!!! TACAATATATTTTTTTGTAT+AGG + chr5_2:1492768-1492787 Msa0748330:intron 10.0%
!!! ATCCTATTATTATTAATTTT+AGG - chr5_2:1494790-1494809 None:intergenic 10.0%
!! TTTGATATATAATCAAAATA+TGG + chr5_2:1495220-1495239 Msa0748330:intron 10.0%
!! TCTAAATAATATAAAAATAG+AGG + chr5_2:1495260-1495279 Msa0748330:intron 10.0%
!! TTTGAACAAAAAAAAAATAT+AGG - chr5_2:1496078-1496097 None:intergenic 10.0%
!! AAATAAATAATAAATAGAAG+AGG - chr5_2:1497240-1497259 None:intergenic 10.0%
!! AAAAATACTTTCATAATATT+CGG - chr5_2:1498569-1498588 None:intergenic 10.0%
!!! TTTACATAAATTTTCATAAA+TGG + chr5_2:1498813-1498832 Msa0748330:intron 10.0%
!!! TATATATAACAAACTTTTTT+TGG - chr5_2:1499069-1499088 None:intergenic 10.0%
!! GAAAAAAATATTGAAACAAT+TGG - chr5_2:1492195-1492214 None:intergenic 15.0%
!! AAAAACTTACAAAATTAAAC+TGG - chr5_2:1492630-1492649 None:intergenic 15.0%
!!! TATATTTTTTTGTATAGGAT+AGG + chr5_2:1492773-1492792 Msa0748330:intron 15.0%
!!! TATTGTCATTGTTATTAATT+AGG + chr5_2:1493103-1493122 Msa0748330:intron 15.0%
!! TCATTAATAAATTACAATCA+AGG - chr5_2:1493983-1494002 None:intergenic 15.0%
!! AATTTCAAAATTTAATACAC+CGG - chr5_2:1494255-1494274 None:intergenic 15.0%
!! TGCCTAAAATTAATAATAAT+AGG + chr5_2:1494785-1494804 Msa0748330:intron 15.0%
!! AATAGGATATTATTGTATAT+AGG + chr5_2:1494802-1494821 Msa0748330:intron 15.0%
!!! ATATATGAATCATAGTTTTA+AGG - chr5_2:1495401-1495420 None:intergenic 15.0%
!! ATTAAGTTAGAAAACAATTT+AGG - chr5_2:1495647-1495666 None:intergenic 15.0%
!!! CTATTTAGAATACATAATAT+TGG + chr5_2:1496910-1496929 Msa0748330:intron 15.0%
!! TTCTTAATCTACATAAAATA+CGG - chr5_2:1497838-1497857 None:intergenic 15.0%
!! TAATTAAAATGTGAAAAAGT+GGG - chr5_2:1498266-1498285 None:intergenic 15.0%
!!! TTGTGTTTATTTTCTTTATT+AGG + chr5_2:1498707-1498726 Msa0748330:intron 15.0%
!! ATTTATGTAAATAATAAAGC+TGG - chr5_2:1498804-1498823 None:intergenic 15.0%
!! ACTCTCATAATTATAATAAT+AGG + chr5_2:1499654-1499673 Msa0748330:intron 15.0%
!!! ACATTTATATGTCTAAATTT+TGG + chr5_2:1500415-1500434 Msa0748330:three_prime_UTR 15.0%
!!! TTTTTTTTTTGCAGTTTCTT+TGG + chr5_2:1492438-1492457 Msa0748330:intron 20.0%
!! TTCAACAAAAAATATTGATG+AGG - chr5_2:1492586-1492605 None:intergenic 20.0%
!!! CATCAATATTTTTTGTTGAA+TGG + chr5_2:1492586-1492605 Msa0748330:CDS 20.0%
!! TCAATATCAATATTGCAAAT+TGG + chr5_2:1493126-1493145 Msa0748330:intron 20.0%
!! CAATCTTAATATACTTGTTT+CGG + chr5_2:1493545-1493564 Msa0748330:intron 20.0%
!! AAAACAGAAACAAAACAAAA+AGG - chr5_2:1493603-1493622 None:intergenic 20.0%
!! AATGTATAAGCAAATGAATA+TGG - chr5_2:1494036-1494055 None:intergenic 20.0%
!! ATTTCAAAATTTAATACACC+GGG - chr5_2:1494254-1494273 None:intergenic 20.0%
!!! GGTGTATTAAATTTTGAAAT+TGG + chr5_2:1494254-1494273 Msa0748330:intron 20.0%
!!! TATTAAATTTTGAAATTGGC+TGG + chr5_2:1494258-1494277 Msa0748330:intron 20.0%
!!! ATTAAATTTTGAAATTGGCT+GGG + chr5_2:1494259-1494278 Msa0748330:intron 20.0%
!!! ATTTTGCCTTAACTTTAATA+GGG - chr5_2:1494466-1494485 None:intergenic 20.0%
!!! AATTTTGCCTTAACTTTAAT+AGG - chr5_2:1494467-1494486 None:intergenic 20.0%
!!! ATTTTCAAGATTCAAATCTA+TGG + chr5_2:1494580-1494599 Msa0748330:intron 20.0%
!!! GTTATCTGAAATTAAGTTAA+GGG + chr5_2:1494746-1494765 Msa0748330:intron 20.0%
!! CTTAAATTGCTATAATTAGT+TGG - chr5_2:1494952-1494971 None:intergenic 20.0%
!!! TAATTTTACAGTTTGAATCA+AGG + chr5_2:1495027-1495046 Msa0748330:intron 20.0%
!! GATATATAATCAAAATATGG+AGG + chr5_2:1495223-1495242 Msa0748330:intron 20.0%
!! TATGATTCATATATCCATTT+AGG + chr5_2:1495407-1495426 Msa0748330:intron 20.0%
!!! AAAAAGTATAATAATGAAGC+AGG - chr5_2:1495922-1495941 None:intergenic 20.0%
!! AACAAAAAAAAAATATAGGC+CGG - chr5_2:1496074-1496093 None:intergenic 20.0%
!!! ATATTCGATTTACTTTTTGT+AGG + chr5_2:1496988-1497007 Msa0748330:intron 20.0%
!! CATCATTAAAATAGACTAAT+AGG - chr5_2:1497491-1497510 None:intergenic 20.0%
!! TGTAATATTATTGACACATT+AGG + chr5_2:1498013-1498032 Msa0748330:intron 20.0%
!! GTAATTAAAATGTGAAAAAG+TGG - chr5_2:1498267-1498286 None:intergenic 20.0%
!! GAGAGAGATATAAAATTAAT+AGG - chr5_2:1498297-1498316 None:intergenic 20.0%
!! AGGAAAATAGGTAATTAAAA+AGG + chr5_2:1498329-1498348 Msa0748330:intron 20.0%
!! GGAAAATAGGTAATTAAAAA+GGG + chr5_2:1498330-1498349 Msa0748330:intron 20.0%
!! GAAAATAGGTAATTAAAAAG+GGG + chr5_2:1498331-1498350 Msa0748330:intron 20.0%
!! AAAATAGGTAATTAAAAAGG+GGG + chr5_2:1498332-1498351 Msa0748330:intron 20.0%
!! ATCAGTTATTCATATCATTA+AGG + chr5_2:1498656-1498675 Msa0748330:intron 20.0%
!! AGTAAATATTATGCTAGTAT+AGG + chr5_2:1498769-1498788 Msa0748330:intron 20.0%
!! GTAAATATTATGCTAGTATA+GGG + chr5_2:1498770-1498789 Msa0748330:intron 20.0%
!!! ATATTTTTTGTAGTTTCTGA+AGG + chr5_2:1499103-1499122 Msa0748330:intron 20.0%
!!! ATTGTTAACTTGAATCATAT+TGG - chr5_2:1499429-1499448 None:intergenic 20.0%
!!! AAACATATATTTTACTAGCA+TGG - chr5_2:1499590-1499609 None:intergenic 20.0%
!! AACTTGTAAACAATTATTTC+AGG + chr5_2:1499833-1499852 Msa0748330:intron 20.0%
!!! ATTTTACTGTACTCAAATAT+AGG + chr5_2:1499944-1499963 Msa0748330:intron 20.0%
!! TGAAGGAAATTTAGAAAATT+TGG + chr5_2:1500087-1500106 Msa0748330:three_prime_UTR 20.0%
!!! GAACTTTTTACAAGTAAAAA+AGG - chr5_2:1500718-1500737 None:intergenic 20.0%
!! CATGTATATAAAAGAAGAAA+TGG - chr5_2:1500740-1500759 None:intergenic 20.0%
!!! CATTTCTTCTTTTATATACA+TGG + chr5_2:1500738-1500757 Msa0748330:three_prime_UTR 20.0%
! ATTTGATACGCAACATTAAT+CGG + chr5_2:1492285-1492304 Msa0748330:intron 25.0%
! TTCGTCTTAATACAAACATA+AGG - chr5_2:1493038-1493057 None:intergenic 25.0%
! GTATTAAGACGAATTTGATT+AGG + chr5_2:1493045-1493064 Msa0748330:intron 25.0%
!! TTGATTATAGTTCTGCAAAT+GGG + chr5_2:1493379-1493398 Msa0748330:intron 25.0%
! TTATATCATCTAATTGCATC+AGG + chr5_2:1493434-1493453 Msa0748330:intron 25.0%
! ATGAAACGTAATTTAATCGT+TGG + chr5_2:1493999-1494018 Msa0748330:intron 25.0%
!! AAGCAACTTTTACATAAAAG+AGG - chr5_2:1494196-1494215 None:intergenic 25.0%
! GTTACCTGAAATTAAGTTAA+GGG - chr5_2:1494500-1494519 None:intergenic 25.0%
! GTGACATGAAAAAAAGATAA+AGG - chr5_2:1494531-1494550 None:intergenic 25.0%
! CCATATGCAAATTGATAAAA+AGG - chr5_2:1494560-1494579 None:intergenic 25.0%
!! CCTTTTTATCAATTTGCATA+TGG + chr5_2:1494557-1494576 Msa0748330:intron 25.0%
! ATGACGTGAAAAAAAGATAA+AGG + chr5_2:1494715-1494734 Msa0748330:intron 25.0%
!! CGTTATCTGAAATTAAGTTA+AGG + chr5_2:1494745-1494764 Msa0748330:intron 25.0%
! ACTTGATTAATAAAATGCAG+TGG + chr5_2:1494995-1495014 Msa0748330:intron 25.0%
!!! AATAAAAGAGTATCTCTCAA+TGG - chr5_2:1495069-1495088 None:intergenic 25.0%
!!! TGAGAGATACTCTTTTATTT+AGG + chr5_2:1495070-1495089 Msa0748330:intron 25.0%
! CATTGAAGATTAATAACAAG+TGG - chr5_2:1495433-1495452 None:intergenic 25.0%
!!! CACTTGTTATTAATCTTCAA+TGG + chr5_2:1495431-1495450 Msa0748330:intron 25.0%
! CTTCATGATATAAATACCAA+AGG - chr5_2:1495553-1495572 None:intergenic 25.0%
! TAATAACTGAACATATAGAG+AGG - chr5_2:1496134-1496153 None:intergenic 25.0%
!!! CAGTTATTAAACCTTTTTTC+CGG + chr5_2:1496145-1496164 Msa0748330:intron 25.0%
!!! AGTTATTAAACCTTTTTTCC+GGG + chr5_2:1496146-1496165 Msa0748330:intron 25.0%
! AATAAACAAAATGGTTGCAT+TGG - chr5_2:1496349-1496368 None:intergenic 25.0%
! GAACATGTGAATAAACAAAA+TGG - chr5_2:1496358-1496377 None:intergenic 25.0%
!!! TACTTTATTTTGGACTTTTG+AGG + chr5_2:1496430-1496449 Msa0748330:intron 25.0%
! GAAAAATCATATGTCACTAT+GGG - chr5_2:1496746-1496765 None:intergenic 25.0%
! AGAAAAATCATATGTCACTA+TGG - chr5_2:1496747-1496766 None:intergenic 25.0%
! AACAAAATACATACAGATCT+AGG - chr5_2:1496883-1496902 None:intergenic 25.0%
! AACATACTCTCATACAAAAA+TGG - chr5_2:1497076-1497095 None:intergenic 25.0%
! AAATACAGGTAGTCTTTATT+TGG + chr5_2:1497104-1497123 Msa0748330:intron 25.0%
!!! ATTTTGAGATGAACTTCATT+TGG - chr5_2:1497198-1497217 None:intergenic 25.0%
!! TTTTAATGATGTTACACTGT+TGG + chr5_2:1497500-1497519 Msa0748330:intron 25.0%
!! AGCATCAAGATCTTAATTTT+TGG - chr5_2:1497539-1497558 None:intergenic 25.0%
! CTTAATTATCTAACGCAATT+TGG - chr5_2:1497761-1497780 None:intergenic 25.0%
! TTAATCTACATAAAATACGG+TGG - chr5_2:1497835-1497854 None:intergenic 25.0%
! TATATGATACACACTGAAAT+TGG + chr5_2:1497892-1497911 Msa0748330:CDS 25.0%
! TTGCTACTAAATAGGAAAAT+AGG + chr5_2:1498317-1498336 Msa0748330:intron 25.0%
!! TTTATTTCTTATCATGTGCA+AGG + chr5_2:1498375-1498394 Msa0748330:intron 25.0%
!! AAACACAAATCTAATTTGCA+AGG + chr5_2:1498413-1498432 Msa0748330:intron 25.0%
!! ATCTGAAACTTAATAACAGT+AGG - chr5_2:1498470-1498489 None:intergenic 25.0%
!!! TAGAAGTCTTATTTTGTTAG+TGG + chr5_2:1498733-1498752 Msa0748330:intron 25.0%
! TATCATGTTAGTATATCCAA+CGG + chr5_2:1499687-1499706 Msa0748330:intron 25.0%
! ATTCCATCTAGTAATTAAAC+TGG + chr5_2:1499777-1499796 Msa0748330:intron 25.0%
! TAACCAGTTTAATTACTAGA+TGG - chr5_2:1499783-1499802 None:intergenic 25.0%
! AGTAGATTATTTCACTATCT+TGG + chr5_2:1499805-1499824 Msa0748330:intron 25.0%
! TTGAGTACAGTAAAATTTCT+GGG - chr5_2:1499940-1499959 None:intergenic 25.0%
! TTTGAGTACAGTAAAATTTC+TGG - chr5_2:1499941-1499960 None:intergenic 25.0%
!! ATCCACGTACTAATTTATTT+TGG + chr5_2:1499984-1500003 Msa0748330:intron 25.0%
!!! GTTATGTTATTTCAAGTTGA+AGG + chr5_2:1500070-1500089 Msa0748330:three_prime_UTR 25.0%
!! ACACAAATTATTTGTTTCTC+AGG + chr5_2:1500191-1500210 Msa0748330:intron 25.0%
! TGTATATAGAAAAGAGTGAT+AGG + chr5_2:1500537-1500556 Msa0748330:three_prime_UTR 25.0%
!! GTTTGTTATCTGTCTTTCTT+TGG + chr5_2:1491938-1491957 Msa0748330:five_prime_UTR 30.0%
ATTCCATGAATGATAGGTTA+TGG - chr5_2:1492093-1492112 None:intergenic 30.0%
GATTGAATTCCATGAATGAT+AGG - chr5_2:1492099-1492118 None:intergenic 30.0%
! TTTTTGTTGAATGGTCGAAA+TGG + chr5_2:1492595-1492614 Msa0748330:CDS 30.0%
ACTAACTAACATCGTGAAAT+AGG - chr5_2:1492680-1492699 None:intergenic 30.0%
TATTAGAGAAGCTGAAAAGT+TGG + chr5_2:1492732-1492751 Msa0748330:intron 30.0%
ATTAGAGAAGCTGAAAAGTT+GGG + chr5_2:1492733-1492752 Msa0748330:intron 30.0%
!!! TAGTGTTTAGACTAGTTTTC+AGG + chr5_2:1492807-1492826 Msa0748330:intron 30.0%
!!! AGTGTTTAGACTAGTTTTCA+GGG + chr5_2:1492808-1492827 Msa0748330:intron 30.0%
! TTTTCAGCTTCTCTAATAGT+AGG - chr5_2:1492730-1492749 None:intergenic 30.0%
TATTAGAGAAGCTGAAAAGT+TGG + chr5_2:1492732-1492751 Msa0748330:intron 30.0%
ATTAGAGAAGCTGAAAAGTT+GGG + chr5_2:1492733-1492752 Msa0748330:intron 30.0%
!!! TAGTGTTTAGACTAGTTTTC+AGG + chr5_2:1492807-1492826 Msa0748330:intron 30.0%
!!! AGTGTTTAGACTAGTTTTCA+GGG + chr5_2:1492808-1492827 Msa0748330:intron 30.0%
TATCAATATTGCAAATTGGC+AGG + chr5_2:1493130-1493149 Msa0748330:intron 30.0%
! TGTGAAGCTTTTAGTATAGT+AGG + chr5_2:1493155-1493174 Msa0748330:CDS 30.0%
! GTTGATTATAGTTCTGCAAA+TGG + chr5_2:1493378-1493397 Msa0748330:intron 30.0%
! TGATTATAGTTCTGCAAATG+GGG + chr5_2:1493380-1493399 Msa0748330:intron 30.0%
! GTTAGTCCATAATGCTTTTA+CGG + chr5_2:1493500-1493519 Msa0748330:CDS 30.0%
ATATTAAGATTGCTTTCACG+AGG - chr5_2:1493537-1493556 None:intergenic 30.0%
!!! TTTTGTTTCTGTTTTGTTCC+TGG + chr5_2:1493608-1493627 Msa0748330:intron 30.0%
!! TATCGACAATTTTTCAGAAG+AGG - chr5_2:1493757-1493776 None:intergenic 30.0%
!! AATTTAATCGTTGGTAGCTT+TGG + chr5_2:1494008-1494027 Msa0748330:intron 30.0%
AAAAATTACTTGTCTCTTCC+CGG + chr5_2:1494233-1494252 Msa0748330:intron 30.0%
ATGGAAATTACCTGTTTATG+TGG - chr5_2:1494375-1494394 None:intergenic 30.0%
CAGTAGGTTATTCAAATCAA+TGG - chr5_2:1494394-1494413 None:intergenic 30.0%
!! CATTGATTTGAATAACCTAC+TGG + chr5_2:1494392-1494411 Msa0748330:intron 30.0%
! ACTCTTCATCATTCTTTTTG+AGG + chr5_2:1494417-1494436 Msa0748330:intron 30.0%
! CCTCATCTAAATTTTCACTT+AGG - chr5_2:1494443-1494462 None:intergenic 30.0%
CCTAAGTGAAAATTTAGATG+AGG + chr5_2:1494440-1494459 Msa0748330:intron 30.0%
TCATCCCTTAACTTAATTTC+AGG + chr5_2:1494493-1494512 Msa0748330:intron 30.0%
CGTTACCTGAAATTAAGTTA+AGG - chr5_2:1494501-1494520 None:intergenic 30.0%
TCATATGAAAACATGAGTGA+AGG - chr5_2:1494642-1494661 None:intergenic 30.0%
CTTGAAAATCCATATGCAAA+CGG + chr5_2:1494677-1494696 Msa0748330:intron 30.0%
CAAATAAGTGATTAGTGTGT+GGG + chr5_2:1495194-1495213 Msa0748330:intron 30.0%
ATATGGAGGACTAAATTTAG+AGG + chr5_2:1495237-1495256 Msa0748330:intron 30.0%
TTAATAACAAGTGGCCTAAA+TGG - chr5_2:1495424-1495443 None:intergenic 30.0%
ATTGCGTTCTGTTATTATCA+CGG + chr5_2:1495484-1495503 Msa0748330:intron 30.0%
TAGAAAACAATTTAGGAGCT+AGG - chr5_2:1495640-1495659 None:intergenic 30.0%
GGATGTATCAAATTAAGGTA+TGG + chr5_2:1495735-1495754 Msa0748330:intron 30.0%
GTATATTTACATAGTTGCCA+AGG + chr5_2:1495757-1495776 Msa0748330:intron 30.0%
! TGAGTTCTAGTCTATTTATG+TGG - chr5_2:1495826-1495845 None:intergenic 30.0%
AAATCCTGAAGATTATGCAA+AGG + chr5_2:1495985-1496004 Msa0748330:CDS 30.0%
CTTTCTCATGTTCTTTGAAT+AGG - chr5_2:1496030-1496049 None:intergenic 30.0%
! ACATGAGAAAGATCTTTTAG+AGG + chr5_2:1496039-1496058 Msa0748330:CDS 30.0%
GAAGATATAAGTTTAGTCAC+TGG - chr5_2:1496192-1496211 None:intergenic 30.0%
TATCTTCTCCATTTCTTGAT+AGG + chr5_2:1496205-1496224 Msa0748330:intron 30.0%
AGACCTTATGACAGTTAAAA+CGG + chr5_2:1496271-1496290 Msa0748330:CDS 30.0%
GTTTATTCACATGTTCATGT+TGG + chr5_2:1496362-1496381 Msa0748330:intron 30.0%
!! TACTCGTGCATACTTTATTT+TGG + chr5_2:1496420-1496439 Msa0748330:intron 30.0%
TTGATATACCAAGTAAAAGG+TGG - chr5_2:1496779-1496798 None:intergenic 30.0%
CCTTTGATATACCAAGTAAA+AGG - chr5_2:1496782-1496801 None:intergenic 30.0%
! CCTTTTACTTGGTATATCAA+AGG + chr5_2:1496779-1496798 Msa0748330:intron 30.0%
AAACATGAAAAATGAGAGCA+AGG - chr5_2:1496805-1496824 None:intergenic 30.0%
TACATACAGATCTAGGAATA+GGG - chr5_2:1496876-1496895 None:intergenic 30.0%
ATACATACAGATCTAGGAAT+AGG - chr5_2:1496877-1496896 None:intergenic 30.0%
! CGAAACATATTTTCTTTGAC+TGG + chr5_2:1496940-1496959 Msa0748330:intron 30.0%
!!! GATTTACTTTTTGTAGGTGA+AGG + chr5_2:1496994-1497013 Msa0748330:intron 30.0%
! TTTTGTACCCATTAGGTTTA+GGG - chr5_2:1497033-1497052 None:intergenic 30.0%
!! TTTTGTATGAGAGTATGTTC+AGG + chr5_2:1497077-1497096 Msa0748330:CDS 30.0%
!! AACTTCATTTGGATTAGCTA+GGG - chr5_2:1497187-1497206 None:intergenic 30.0%
AAGAGGATGATAAACTCATT+AGG - chr5_2:1497223-1497242 None:intergenic 30.0%
GTAGATTAGAACAGAAGAAA+TGG + chr5_2:1497262-1497281 Msa0748330:intron 30.0%
!! AGACGGTATTATTTCTGATA+CGG - chr5_2:1497788-1497807 None:intergenic 30.0%
TAGATTAAGAATCTTCCTCA+AGG + chr5_2:1497847-1497866 Msa0748330:intron 30.0%
ATTCCATCAGTACAAAAATG+GGG - chr5_2:1497944-1497963 None:intergenic 30.0%
GATTCCATCAGTACAAAAAT+GGG - chr5_2:1497945-1497964 None:intergenic 30.0%
TGATTCCATCAGTACAAAAA+TGG - chr5_2:1497946-1497965 None:intergenic 30.0%
CTCCAAATAGAAAACATACT+GGG - chr5_2:1498140-1498159 None:intergenic 30.0%
ACTCCAAATAGAAAACATAC+TGG - chr5_2:1498141-1498160 None:intergenic 30.0%
!! ATGTTTTCTATTTGGAGTGA+TGG + chr5_2:1498143-1498162 Msa0748330:intron 30.0%
TAATAATCCATATGTGTGCA+AGG - chr5_2:1498239-1498258 None:intergenic 30.0%
TAATTAAAAAGGGGGAAAAG+TGG + chr5_2:1498340-1498359 Msa0748330:intron 30.0%
AATTAAAAAGGGGGAAAAGT+GGG + chr5_2:1498341-1498360 Msa0748330:intron 30.0%
! TAAGCGCACATCAAATATTT+TGG + chr5_2:1498498-1498517 Msa0748330:intron 30.0%
! AAGCGCACATCAAATATTTT+GGG + chr5_2:1498499-1498518 Msa0748330:intron 30.0%
!! AGCATCTTTAGAATGTATTG+TGG + chr5_2:1498632-1498651 Msa0748330:intron 30.0%
!!! TCTTATTTTGTTAGTGGCTT+AGG + chr5_2:1498739-1498758 Msa0748330:intron 30.0%
ATATTCACCTTTCACTTCAT+TGG + chr5_2:1498862-1498881 Msa0748330:intron 30.0%
TCATAATTAACTTCGTTACC+AGG + chr5_2:1498888-1498907 Msa0748330:intron 30.0%
TGCAAGACACAAAATAATGA+AGG + chr5_2:1498975-1498994 Msa0748330:exon 30.0%
AGACACAAAATAATGAAGGT+AGG + chr5_2:1498979-1498998 Msa0748330:intron 30.0%
GAATCTGAAAAACTGTCAAA+TGG + chr5_2:1499203-1499222 Msa0748330:three_prime_UTR 30.0%
! TATTTTCCCCCTTTTATGTT+TGG - chr5_2:1499240-1499259 None:intergenic 30.0%
AGGGGGAAAATATTATTGAA+CGG + chr5_2:1499248-1499267 Msa0748330:three_prime_UTR 30.0%
GAAAATATTATTGAACGGTG+TGG + chr5_2:1499253-1499272 Msa0748330:three_prime_UTR 30.0%
GTGCATCATGTAAATTTGAA+GGG + chr5_2:1499368-1499387 Msa0748330:three_prime_UTR 30.0%
ATGTAAATTTGAAGGGCAAA+GGG + chr5_2:1499375-1499394 Msa0748330:three_prime_UTR 30.0%
! AATATATGTTTTGCACCATG+TGG + chr5_2:1499599-1499618 Msa0748330:intron 30.0%
ATCATGTTAGTATATCCAAC+GGG + chr5_2:1499688-1499707 Msa0748330:intron 30.0%
AACAATTATTTCAGGCATGA+TGG + chr5_2:1499841-1499860 Msa0748330:intron 30.0%
TGAGTACAGTAAAATTTCTG+GGG - chr5_2:1499939-1499958 None:intergenic 30.0%
CAAATATAGGATGATGTCTT+TGG + chr5_2:1499957-1499976 Msa0748330:intron 30.0%
TGCCAAAATAAATTAGTACG+TGG - chr5_2:1499989-1500008 None:intergenic 30.0%
ATTAAGAATCAAGCATAACC+AGG - chr5_2:1500131-1500150 None:intergenic 30.0%
TGTTTCATTGAATGTGTTCA+TGG + chr5_2:1500161-1500180 Msa0748330:intron 30.0%
TTCTTGAATGCTAGATGATT+TGG + chr5_2:1500304-1500323 Msa0748330:three_prime_UTR 30.0%
!!! GTTTTGAGTTTCTGAAACTT+TGG - chr5_2:1500508-1500527 None:intergenic 30.0%
TTTCAGAAACTCAAAACTGA+AGG + chr5_2:1500511-1500530 Msa0748330:three_prime_UTR 30.0%
AGAAAAGAGTGATAGGATAA+AGG + chr5_2:1500544-1500563 Msa0748330:three_prime_UTR 30.0%
! ATAAAGTGCTTGGTATAATG+AGG + chr5_2:1500654-1500673 Msa0748330:three_prime_UTR 30.0%
AATCGAGAAGATGGTTATTG+CGG - chr5_2:1492041-1492060 None:intergenic 35.0%
! TCCTCTGTTTCTCTCAATTA+TGG + chr5_2:1492130-1492149 Msa0748330:exon 35.0%
!! GTTTTAGTACCTGACATGAA+AGG - chr5_2:1492164-1492183 None:intergenic 35.0%
GCGAAAATGTTACTAGTGTT+TGG + chr5_2:1492387-1492406 Msa0748330:intron 35.0%
GTGTGAATGTATGCAATTCT+TGG + chr5_2:1492464-1492483 Msa0748330:CDS 35.0%
AATGTATGCAATTCTTGGAG+AGG + chr5_2:1492469-1492488 Msa0748330:CDS 35.0%
ATGTATGCAATTCTTGGAGA+GGG + chr5_2:1492470-1492489 Msa0748330:CDS 35.0%
! GTAAGTTTTTGTAGTTCCCT+TGG + chr5_2:1492640-1492659 Msa0748330:intron 35.0%
CTTCTCTAATAGTAGGTCAA+GGG - chr5_2:1492840-1492859 None:intergenic 35.0%
! AGTTCTAACCAATAGGTCAA+GGG - chr5_2:1492952-1492971 None:intergenic 35.0%
! AAGTTCTAACCAATAGGTCA+AGG - chr5_2:1492953-1492972 None:intergenic 35.0%
CTAGATTTGCATCTAGAGAA+TGG + chr5_2:1493240-1493259 Msa0748330:CDS 35.0%
!!! TTGTTCTTCGGTTTTTTCCT+CGG + chr5_2:1493271-1493290 Msa0748330:CDS 35.0%
!! AGCTTACCGTAAAAGCATTA+TGG - chr5_2:1493509-1493528 None:intergenic 35.0%
! ATAATGCTTTTACGGTAAGC+TGG + chr5_2:1493508-1493527 Msa0748330:intron 35.0%
ATTTGTCCAGGAACTTGATT+GGG + chr5_2:1493826-1493845 Msa0748330:intron 35.0%
TTACATTATCGATCCCAACT+AGG + chr5_2:1494065-1494084 Msa0748330:intron 35.0%
ACTAAAGAATTTGTCACTGC+AGG + chr5_2:1494284-1494303 Msa0748330:intron 35.0%
TTATCGTCAAATTAGCAGAC+AGG + chr5_2:1494316-1494335 Msa0748330:CDS 35.0%
GAAATTACCTGTTTATGTGG+AGG - chr5_2:1494372-1494391 None:intergenic 35.0%
ATGAGGCCCTATTAAAGTTA+AGG + chr5_2:1494457-1494476 Msa0748330:intron 35.0%
!!! TCACGTCATTTTTGTCCTTT+TGG - chr5_2:1494704-1494723 None:intergenic 35.0%
! CTCACTTTGCTCTTTTTGTA+AGG - chr5_2:1495107-1495126 None:intergenic 35.0%
AAGAGCAAAGTGAGATATGT+TGG + chr5_2:1495113-1495132 Msa0748330:intron 35.0%
TGTTACTAAGTTCTTCGTCA+CGG - chr5_2:1495147-1495166 None:intergenic 35.0%
CCACACACTAATCACTTATT+TGG - chr5_2:1495196-1495215 None:intergenic 35.0%
CCAAATAAGTGATTAGTGTG+TGG + chr5_2:1495193-1495212 Msa0748330:intron 35.0%
TTGCGTTCTGTTATTATCAC+GGG + chr5_2:1495485-1495504 Msa0748330:intron 35.0%
AAAGGCTCATTCAGTACTTT+CGG - chr5_2:1495535-1495554 None:intergenic 35.0%
TGTACAGAATAGCATTGCAA+TGG + chr5_2:1495673-1495692 Msa0748330:intron 35.0%
ATTACAGGTATTTGCTCCTT+TGG + chr5_2:1495700-1495719 Msa0748330:CDS 35.0%
GCTTGGGATGTATCAAATTA+AGG + chr5_2:1495730-1495749 Msa0748330:CDS 35.0%
!! AGTCTATTTATGTGGACTAG+TGG - chr5_2:1495818-1495837 None:intergenic 35.0%
ACTTGTATTTCATGACACGA+AGG + chr5_2:1495882-1495901 Msa0748330:intron 35.0%
TTCACCTTTGCATAATCTTC+AGG - chr5_2:1495992-1496011 None:intergenic 35.0%
CTCATGTTCTTTGAATAGGT+CGG - chr5_2:1496026-1496045 None:intergenic 35.0%
!! AGATCTTTTAGAGGTAGTAC+TGG + chr5_2:1496048-1496067 Msa0748330:intron 35.0%
TTTGTTCGCCTATCAAGAAA+TGG - chr5_2:1496216-1496235 None:intergenic 35.0%
GGTCTAAGAATTGATCATCT+TGG - chr5_2:1496256-1496275 None:intergenic 35.0%
!!! CTTCCGTTTTAACTGTCATA+AGG - chr5_2:1496277-1496296 None:intergenic 35.0%
TGAGATTAACCAAATTGCAC+AGG + chr5_2:1496545-1496564 Msa0748330:CDS 35.0%
! GCTTTGATTTCTACGTTGAA+AGG + chr5_2:1496571-1496590 Msa0748330:intron 35.0%
!! CAGATTTGCTATCATGTTCT+GGG + chr5_2:1496829-1496848 Msa0748330:intron 35.0%
!! AGATTTGCTATCATGTTCTG+GGG + chr5_2:1496830-1496849 Msa0748330:intron 35.0%
ACATACAGATCTAGGAATAG+GGG - chr5_2:1496875-1496894 None:intergenic 35.0%
TTTGTACCCATTAGGTTTAG+GGG - chr5_2:1497032-1497051 None:intergenic 35.0%
! CTTTTGTACCCATTAGGTTT+AGG - chr5_2:1497034-1497053 None:intergenic 35.0%
! TGAAGACTTTTGTACCCATT+AGG - chr5_2:1497040-1497059 None:intergenic 35.0%
TATGTTCAGGCTTGAAATAC+AGG + chr5_2:1497090-1497109 Msa0748330:CDS 35.0%
! TCCACATTCCATTTTCTTCA+AGG + chr5_2:1497147-1497166 Msa0748330:intron 35.0%
! CCACATTCCATTTTCTTCAA+GGG + chr5_2:1497148-1497167 Msa0748330:intron 35.0%
! CACATTCCATTTTCTTCAAG+GGG + chr5_2:1497149-1497168 Msa0748330:intron 35.0%
!! GAACTTCATTTGGATTAGCT+AGG - chr5_2:1497188-1497207 None:intergenic 35.0%
! AAATGGATTTGATAGCTGAG+AGG + chr5_2:1497279-1497298 Msa0748330:CDS 35.0%
! AATGGATTTGATAGCTGAGA+GGG + chr5_2:1497280-1497299 Msa0748330:CDS 35.0%
ACTGTTACAAGAGATCTTCT+GGG + chr5_2:1497657-1497676 Msa0748330:CDS 35.0%
GGATTATGTCATATACTACG+TGG + chr5_2:1497722-1497741 Msa0748330:intron 35.0%
TATCTAACGCAATTTGGATG+AGG - chr5_2:1497755-1497774 None:intergenic 35.0%
!! GACGGTATTATTTCTGATAC+GGG - chr5_2:1497787-1497806 None:intergenic 35.0%
!! TATCCCCATTTTTGTACTGA+TGG + chr5_2:1497938-1497957 Msa0748330:intron 35.0%
TGACACATTAGGTTTAATGC+AGG + chr5_2:1498024-1498043 Msa0748330:intron 35.0%
TTAGGTTTAATGCAGGTCAA+CGG + chr5_2:1498031-1498050 Msa0748330:intron 35.0%
AATAGAAAACATACTGGGTG+AGG - chr5_2:1498135-1498154 None:intergenic 35.0%
! CACCCAGTATGTTTTCTATT+TGG + chr5_2:1498135-1498154 Msa0748330:intron 35.0%
TCTCTCTCTTGCTACTAAAT+AGG + chr5_2:1498309-1498328 Msa0748330:intron 35.0%
ATCATTAAGGAAGCAATCGT+AGG + chr5_2:1498669-1498688 Msa0748330:intron 35.0%
! CTAGCAAATCAGCTTTTCAA+AGG + chr5_2:1498917-1498936 Msa0748330:CDS 35.0%
AACATAAACTTCGTCTGAGT+TGG - chr5_2:1499033-1499052 None:intergenic 35.0%
CAGTAGCTCCAAACATAAAA+GGG + chr5_2:1499229-1499248 Msa0748330:three_prime_UTR 35.0%
AGTAGCTCCAAACATAAAAG+GGG + chr5_2:1499230-1499249 Msa0748330:three_prime_UTR 35.0%
! TTGTGTTTTCCATTGACCTT+GGG - chr5_2:1499341-1499360 None:intergenic 35.0%
! ATTGTGTTTTCCATTGACCT+TGG - chr5_2:1499342-1499361 None:intergenic 35.0%
CGTGCATCATGTAAATTTGA+AGG + chr5_2:1499367-1499386 Msa0748330:three_prime_UTR 35.0%
CATGTAAATTTGAAGGGCAA+AGG + chr5_2:1499374-1499393 Msa0748330:three_prime_UTR 35.0%
TGTAAATTTGAAGGGCAAAG+GGG + chr5_2:1499376-1499395 Msa0748330:three_prime_UTR 35.0%
! GGCAGGACTTCTTTATATTT+TGG - chr5_2:1499452-1499471 None:intergenic 35.0%
AAATATAAAGAAGTCCTGCC+AGG + chr5_2:1499452-1499471 Msa0748330:three_prime_UTR 35.0%
TACAACAGATAACCATTGGA+TGG - chr5_2:1499534-1499553 None:intergenic 35.0%
TGCATACAACAGATAACCAT+TGG - chr5_2:1499538-1499557 None:intergenic 35.0%
! TTTTACTAGCATGGATGATC+AGG - chr5_2:1499581-1499600 None:intergenic 35.0%
GAAGCCATCAAAAAGTTCAT+TGG - chr5_2:1499625-1499644 None:intergenic 35.0%
TAAGAGAGTGATTGAAGGAT+AGG + chr5_2:1499711-1499730 Msa0748330:intron 35.0%
! ATTTGACTTATCAAACGACC+AGG + chr5_2:1500018-1500037 Msa0748330:intron 35.0%
TACTGTATCATGTCTAATCC+TGG + chr5_2:1500110-1500129 Msa0748330:intron 35.0%
!! CTCTAGAGTAGATCAAATAC+CGG + chr5_2:1500224-1500243 Msa0748330:three_prime_UTR 35.0%
! TCTAGAGTAGATCAAATACC+GGG + chr5_2:1500225-1500244 Msa0748330:three_prime_UTR 35.0%
CAGAACTGATCTGTAATCAT+TGG - chr5_2:1500367-1500386 None:intergenic 35.0%
CAATGATTACAGATCAGTTC+TGG + chr5_2:1500365-1500384 Msa0748330:three_prime_UTR 35.0%
TGCTTGGTATAATGAGGATA+GGG + chr5_2:1500660-1500679 Msa0748330:three_prime_UTR 35.0%
ATGAGATATCCTGTTACGCT+CGG - chr5_2:1491902-1491921 None:intergenic 40.0%
GAAGATGGTTATTGCGGTTA+TGG - chr5_2:1492035-1492054 None:intergenic 40.0%
GAATCGGAAAATCGAGAAGA+TGG - chr5_2:1492050-1492069 None:intergenic 40.0%
GAAGGGGAAGAGAATTGAAT+CGG - chr5_2:1492066-1492085 None:intergenic 40.0%
TGATAGGTTATGGAGGAGAA+GGG - chr5_2:1492083-1492102 None:intergenic 40.0%
ATGATAGGTTATGGAGGAGA+AGG - chr5_2:1492084-1492103 None:intergenic 40.0%
CCATGAATGATAGGTTATGG+AGG - chr5_2:1492090-1492109 None:intergenic 40.0%
CCTCCATAACCTATCATTCA+TGG + chr5_2:1492087-1492106 Msa0748330:five_prime_UTR 40.0%
GCCATAATTGAGAGAAACAG+AGG - chr5_2:1492134-1492153 None:intergenic 40.0%
TGTATGCAATTCTTGGAGAG+GGG + chr5_2:1492471-1492490 Msa0748330:CDS 40.0%
AAATCTCCTAGGGTTCTTAC+CGG + chr5_2:1492538-1492557 Msa0748330:CDS 40.0%
GCTTCTCTAATAGTAGGTCA+AGG - chr5_2:1492841-1492860 None:intergenic 40.0%
! GGGTCTAAGTTCTAACCAAT+AGG - chr5_2:1492959-1492978 None:intergenic 40.0%
! AGACCCCCTTTAGATTTGTT+CGG + chr5_2:1492973-1492992 Msa0748330:intron 40.0%
TGTGCCGAACAAATCTAAAG+GGG - chr5_2:1492980-1492999 None:intergenic 40.0%
GTGTGCCGAACAAATCTAAA+GGG - chr5_2:1492981-1493000 None:intergenic 40.0%
! TCATATTCCGACAAAGCACT+TGG + chr5_2:1493179-1493198 Msa0748330:CDS 40.0%
! ATGGCAGTTGTCTTGTTCTT+CGG + chr5_2:1493259-1493278 Msa0748330:CDS 40.0%
TCTTGACCTTTACTGAACCT+TGG + chr5_2:1493338-1493357 Msa0748330:intron 40.0%
TCTAATTGCATCAGGACCTT+AGG + chr5_2:1493442-1493461 Msa0748330:intron 40.0%
GTATCTTCCTCCTAAAGAAC+TGG + chr5_2:1493476-1493495 Msa0748330:CDS 40.0%
ACTAACTCCAGTTCTTTAGG+AGG - chr5_2:1493486-1493505 None:intergenic 40.0%
TGGACTAACTCCAGTTCTTT+AGG - chr5_2:1493489-1493508 None:intergenic 40.0%
TTGTTCCTGGTTGTTACAGT+TGG + chr5_2:1493621-1493640 Msa0748330:intron 40.0%
AAATGCCAACTGTAACAACC+AGG - chr5_2:1493629-1493648 None:intergenic 40.0%
! TTGGCATTTAAAGCTCACGA+TGG + chr5_2:1493640-1493659 Msa0748330:CDS 40.0%
TCAACCGGATGAATGATGAA+GGG - chr5_2:1493688-1493707 None:intergenic 40.0%
CAATCAAGTTCCTGGACAAA+TGG - chr5_2:1493827-1493846 None:intergenic 40.0%
CATTTGTCCAGGAACTTGAT+TGG + chr5_2:1493825-1493844 Msa0748330:intron 40.0%
TGCTGGATTACTTCATGACA+CGG + chr5_2:1493859-1493878 Msa0748330:CDS 40.0%
! CAGATGTTGTGACTTTTGAG+AGG + chr5_2:1493891-1493910 Msa0748330:CDS 40.0%
!! TGTGACTTTTGAGAGGATAG+AGG + chr5_2:1493898-1493917 Msa0748330:CDS 40.0%
TGTTCAAGATGTGAAAGCAG+AGG + chr5_2:1494131-1494150 Msa0748330:CDS 40.0%
!! AATGTTTCTGGCTATGACAG+AGG + chr5_2:1494164-1494183 Msa0748330:CDS 40.0%
ACATATGCCTCCACATAAAC+AGG + chr5_2:1494362-1494381 Msa0748330:CDS 40.0%
AATGATGAAGAGTCACCAGT+AGG - chr5_2:1494410-1494429 None:intergenic 40.0%
AATAAAATGCAGTGGTGCGA+AGG + chr5_2:1495003-1495022 Msa0748330:intron 40.0%
GTTACTAAGTTCTTCGTCAC+GGG - chr5_2:1495146-1495165 None:intergenic 40.0%
! CCAAGTGAAGCAAGAGTTTT+AGG - chr5_2:1495286-1495305 None:intergenic 40.0%
CCTAAAACTCTTGCTTCACT+TGG + chr5_2:1495283-1495302 Msa0748330:intron 40.0%
!! GAAAGTACTGAATGAGCCTT+TGG + chr5_2:1495534-1495553 Msa0748330:intron 40.0%
!! CAATTGAGTTGAGTGTGTGA+CGG + chr5_2:1495613-1495632 Msa0748330:intron 40.0%
!! AATTGAGTTGAGTGTGTGAC+GGG + chr5_2:1495614-1495633 Msa0748330:intron 40.0%
CATTGCAATGGAGACATTAC+AGG + chr5_2:1495685-1495704 Msa0748330:CDS 40.0%
TTACATAGTTGCCAAGGCTA+AGG + chr5_2:1495763-1495782 Msa0748330:intron 40.0%
TGACACGAAGGAAATTCTCT+TGG + chr5_2:1495894-1495913 Msa0748330:intron 40.0%
TACACAATCACCCGGAAAAA+AGG - chr5_2:1496159-1496178 None:intergenic 40.0%
TGCAATGATACACAATCACC+CGG - chr5_2:1496167-1496186 None:intergenic 40.0%
! GTTTCGTGGATTAACCTGTA+AGG - chr5_2:1496320-1496339 None:intergenic 40.0%
CAAAGCAAACCTGTGCAATT+TGG - chr5_2:1496557-1496576 None:intergenic 40.0%
CTACGTTGAAAGGCTTAATG+TGG + chr5_2:1496581-1496600 Msa0748330:intron 40.0%
CATATGTCACTATGGGTAAG+TGG - chr5_2:1496739-1496758 None:intergenic 40.0%
!! GCAGATTTGCTATCATGTTC+TGG + chr5_2:1496828-1496847 Msa0748330:intron 40.0%
ATTGCAACCCCTAAACCTAA+TGG + chr5_2:1497022-1497041 Msa0748330:CDS 40.0%
TTGCAACCCCTAAACCTAAT+GGG + chr5_2:1497023-1497042 Msa0748330:CDS 40.0%
CCCTTGAAGAAAATGGAATG+TGG - chr5_2:1497151-1497170 None:intergenic 40.0%
GTACAACCCCTTGAAGAAAA+TGG - chr5_2:1497158-1497177 None:intergenic 40.0%
! ATGGATTTGATAGCTGAGAG+GGG + chr5_2:1497281-1497300 Msa0748330:CDS 40.0%
! TGATGTTACACTGTTGGTCT+TGG + chr5_2:1497506-1497525 Msa0748330:intron 40.0%
! CATGAGCCTTTTCTACAGAT+TGG + chr5_2:1497564-1497583 Msa0748330:intron 40.0%
CACTGTTACAAGAGATCTTC+TGG + chr5_2:1497656-1497675 Msa0748330:CDS 40.0%
GTCTTTGTATTTACACCCAG+TGG + chr5_2:1497687-1497706 Msa0748330:CDS 40.0%
TCAGAAATAATACCGTCTGC+AGG + chr5_2:1497790-1497809 Msa0748330:intron 40.0%
CACTGAAATTGGCAACAAGA+TGG + chr5_2:1497903-1497922 Msa0748330:CDS 40.0%
! GTACTGATGGAATCAAGTGT+CGG + chr5_2:1497951-1497970 Msa0748330:intron 40.0%
ATGAGCTCCAATGAAGTGAA+AGG - chr5_2:1498872-1498891 None:intergenic 40.0%
!! CTTTTCAAAGGCATAAGCAG+TGG + chr5_2:1498929-1498948 Msa0748330:CDS 40.0%
GGTTGCAACATGCTAAAACA+CGG + chr5_2:1498950-1498969 Msa0748330:CDS 40.0%
TAATGAAGGTAGGTCATCTG+AGG + chr5_2:1498989-1499008 Msa0748330:intron 40.0%
TTCTGTAGTGATATCAGCAG+CGG - chr5_2:1499144-1499163 None:intergenic 40.0%
GACTTTCTCAGTGATTCTGA+CGG + chr5_2:1499173-1499192 Msa0748330:three_prime_UTR 40.0%
ACTTTCTCAGTGATTCTGAC+GGG + chr5_2:1499174-1499193 Msa0748330:three_prime_UTR 40.0%
!! CCTTTTATGTTTGGAGCTAC+TGG - chr5_2:1499231-1499250 None:intergenic 40.0%
CCAGTAGCTCCAAACATAAA+AGG + chr5_2:1499228-1499247 Msa0748330:three_prime_UTR 40.0%
GTAGCTCCAAACATAAAAGG+GGG + chr5_2:1499231-1499250 Msa0748330:three_prime_UTR 40.0%
ACTGTCCTTCAGAGTAAGAA+TGG + chr5_2:1499302-1499321 Msa0748330:three_prime_UTR 40.0%
CACTTCCATTCTTACTCTGA+AGG - chr5_2:1499310-1499329 None:intergenic 40.0%
!! AGAGTAAGAATGGAAGTGCT+TGG + chr5_2:1499312-1499331 Msa0748330:three_prime_UTR 40.0%
CTTGAATCATATTGGCGACA+TGG - chr5_2:1499421-1499440 None:intergenic 40.0%
CAAAAAGTTCATTGGCCACA+TGG - chr5_2:1499617-1499636 None:intergenic 40.0%
! GTGGCCAATGAACTTTTTGA+TGG + chr5_2:1499618-1499637 Msa0748330:intron 40.0%
AGAGTGATTGAAGGATAGGA+TGG + chr5_2:1499715-1499734 Msa0748330:intron 40.0%
ACTCACCACACAAGAACATA+CGG - chr5_2:1499903-1499922 None:intergenic 40.0%
! CAGTAAAATTTCTGGGGACT+TGG - chr5_2:1499933-1499952 None:intergenic 40.0%
! AGATCAAATACCGGGTGTTT+TGG + chr5_2:1500233-1500252 Msa0748330:three_prime_UTR 40.0%
! GATCAAATACCGGGTGTTTT+GGG + chr5_2:1500234-1500253 Msa0748330:three_prime_UTR 40.0%
TATAAATGTCTGCGCTTCTG+CGG - chr5_2:1500404-1500423 None:intergenic 40.0%
AACTCACTAACCCAATAAGC+CGG + chr5_2:1500463-1500482 Msa0748330:three_prime_UTR 40.0%
ACTTGTGCAGCATTTACACA+AGG + chr5_2:1500584-1500603 Msa0748330:three_prime_UTR 40.0%
! ATTTACACAAGGAGCTTGCT+AGG + chr5_2:1500595-1500614 Msa0748330:three_prime_UTR 40.0%
CAAGCACTTTATCACACGTT+TGG - chr5_2:1500646-1500665 None:intergenic 40.0%
! CAAACGTGTGATAAAGTGCT+TGG + chr5_2:1500644-1500663 Msa0748330:three_prime_UTR 40.0%
GTGCTTGGTATAATGAGGAT+AGG + chr5_2:1500659-1500678 Msa0748330:three_prime_UTR 40.0%
GAAGAAGAAGAGAGTGAGAG+TGG - chr5_2:1492003-1492022 None:intergenic 45.0%
GATAGGTTATGGAGGAGAAG+GGG - chr5_2:1492082-1492101 None:intergenic 45.0%
ATGTGCGTCGAAATCTCCTA+GGG + chr5_2:1492528-1492547 Msa0748330:CDS 45.0%
! TGTAGTTCCCTTGGCGTTTT+CGG + chr5_2:1492649-1492668 Msa0748330:intron 45.0%
GAGAAGCTGAAAAGTTGGGT+CGG + chr5_2:1492737-1492756 Msa0748330:intron 45.0%
GAGAAGCTGAAAAGTTGGGT+CGG + chr5_2:1492737-1492756 Msa0748330:intron 45.0%
GTGCCGAACAAATCTAAAGG+GGG - chr5_2:1492979-1492998 None:intergenic 45.0%
GGTGTGCCGAACAAATCTAA+AGG - chr5_2:1492982-1493001 None:intergenic 45.0%
! AGTTTTCCCCTGGAAGTTTG+TGG + chr5_2:1493306-1493325 Msa0748330:CDS 45.0%
! GTTTTCCCCTGGAAGTTTGT+GGG + chr5_2:1493307-1493326 Msa0748330:CDS 45.0%
CAACTGCCAAGGTTCAGTAA+AGG - chr5_2:1493347-1493366 None:intergenic 45.0%
CTTTACTGAACCTTGGCAGT+TGG + chr5_2:1493345-1493364 Msa0748330:intron 45.0%
AATACATGTGCCAACTGCCA+AGG - chr5_2:1493358-1493377 None:intergenic 45.0%
AGGAGGAAGATACGAGATCA+CGG - chr5_2:1493469-1493488 None:intergenic 45.0%
CGAACCCTTCATCATTCATC+CGG + chr5_2:1493681-1493700 Msa0748330:CDS 45.0%
CTCAACCGGATGAATGATGA+AGG - chr5_2:1493689-1493708 None:intergenic 45.0%
CTTCATCATTCATCCGGTTG+AGG + chr5_2:1493687-1493706 Msa0748330:CDS 45.0%
GAATGTCCAACCATTTGTCC+AGG + chr5_2:1493814-1493833 Msa0748330:intron 45.0%
CAAGTTCCTGGACAAATGGT+TGG - chr5_2:1493823-1493842 None:intergenic 45.0%
TTGACTCCCAATCAAGTTCC+TGG - chr5_2:1493835-1493854 None:intergenic 45.0%
!! GACTTTTGAGAGGATAGAGG+AGG + chr5_2:1493901-1493920 Msa0748330:CDS 45.0%
GAGAGGATAGAGGAGGAATT+TGG + chr5_2:1493908-1493927 Msa0748330:CDS 45.0%
CATTGTGGAAGGAGAGACTA+AGG + chr5_2:1493946-1493965 Msa0748330:CDS 45.0%
ATGTGAAAGCAGAGGACCTT+CGG + chr5_2:1494139-1494158 Msa0748330:CDS 45.0%
TAGCCAGAAACATTTGCCGA+AGG - chr5_2:1494158-1494177 None:intergenic 45.0%
! CCTTTTGGTCCGTTTGCATA+TGG - chr5_2:1494689-1494708 None:intergenic 45.0%
CCATATGCAAACGGACCAAA+AGG + chr5_2:1494686-1494705 Msa0748330:intron 45.0%
AACTCTTGCTTCACTTGGCT+TGG + chr5_2:1495288-1495307 Msa0748330:intron 45.0%
ACTCTTGCTTCACTTGGCTT+GGG + chr5_2:1495289-1495308 Msa0748330:intron 45.0%
CGTCACACACTCAACTCAAT+TGG - chr5_2:1495615-1495634 None:intergenic 45.0%
CTCCTTTGGCAAAGTTGCTT+GGG + chr5_2:1495714-1495733 Msa0748330:CDS 45.0%
ATCCCAAGCAACTTTGCCAA+AGG - chr5_2:1495719-1495738 None:intergenic 45.0%
!! ATGTGGACTAGTGGCATTGT+AGG - chr5_2:1495809-1495828 None:intergenic 45.0%
!!! CTTTTAGAGGTAGTACTGGC+CGG + chr5_2:1496052-1496071 Msa0748330:intron 45.0%
CTGTGTGTAAAGAGCCTTAC+AGG + chr5_2:1496303-1496322 Msa0748330:CDS 45.0%
ATTAAACCAAAGCCGTGCGT+TGG + chr5_2:1496681-1496700 Msa0748330:CDS 45.0%
TTAAACCAAAGCCGTGCGTT+GGG + chr5_2:1496682-1496701 Msa0748330:CDS 45.0%
! CACTTGCTCCACCTTTTACT+TGG + chr5_2:1496768-1496787 Msa0748330:intron 45.0%
!! TTTGGATTAGCTAGGGCAGT+AGG - chr5_2:1497180-1497199 None:intergenic 45.0%
GCATTGCAGCTCACTATAGT+GGG + chr5_2:1497303-1497322 Msa0748330:CDS 45.0%
AGTGGGAGAGAATTCGTTAC+TGG + chr5_2:1497320-1497339 Msa0748330:CDS 45.0%
! GAGAGAATTCGTTACTGGCT+TGG + chr5_2:1497325-1497344 Msa0748330:CDS 45.0%
!! GAATTCGTTACTGGCTTGGT+TGG + chr5_2:1497329-1497348 Msa0748330:CDS 45.0%
! AGCCTTTTCTACAGATTGGC+TGG + chr5_2:1497568-1497587 Msa0748330:intron 45.0%
AGCCAGCCAATCTGTAGAAA+AGG - chr5_2:1497573-1497592 None:intergenic 45.0%
GGCTCAATGCTATTAGAGAG+TGG + chr5_2:1497589-1497608 Msa0748330:CDS 45.0%
GAGTGGCAAGAAGAGTTTGT+TGG + chr5_2:1497606-1497625 Msa0748330:CDS 45.0%
TTGTTGGCAACATGAGCTCT+AGG + chr5_2:1497622-1497641 Msa0748330:CDS 45.0%
TGTTGGCAACATGAGCTCTA+GGG + chr5_2:1497623-1497642 Msa0748330:CDS 45.0%
!! CATGAGCTCTAGGGAATTTG+TGG + chr5_2:1497632-1497651 Msa0748330:CDS 45.0%
TGTATTTACACCCAGTGGAG+AGG + chr5_2:1497692-1497711 Msa0748330:CDS 45.0%
TCAATCACAGTAGCACCTTG+AGG - chr5_2:1497865-1497884 None:intergenic 45.0%
CAACAAGATGGTAGCTGCAA+AGG + chr5_2:1497915-1497934 Msa0748330:CDS 45.0%
GCTTGCAAATGCAGAAGTTG+TGG + chr5_2:1498078-1498097 Msa0748330:CDS 45.0%
!! AGTGATGGATCTGATGCAAC+TGG + chr5_2:1498158-1498177 Msa0748330:intron 45.0%
TGTGCAACCTTGCACACATA+TGG + chr5_2:1498229-1498248 Msa0748330:intron 45.0%
!! CTGATTTGCTAGAAAGTGCC+TGG - chr5_2:1498909-1498928 None:intergenic 45.0%
CTTTCTCAGTGATTCTGACG+GGG + chr5_2:1499175-1499194 Msa0748330:three_prime_UTR 45.0%
TCCTGCCAGGTTTAGAAAGT+TGG + chr5_2:1499465-1499484 Msa0748330:three_prime_UTR 45.0%
GCTTGCCAACTTTCTAAACC+TGG - chr5_2:1499473-1499492 None:intergenic 45.0%
AAGCCCATAAAATTGCCTCG+TGG + chr5_2:1499489-1499508 Msa0748330:three_prime_UTR 45.0%
! GTGCCACGAGGCAATTTTAT+GGG - chr5_2:1499495-1499514 None:intergenic 45.0%
! TGTGCCACGAGGCAATTTTA+TGG - chr5_2:1499496-1499515 None:intergenic 45.0%
CCTCGTGGCACAATATAGAA+GGG + chr5_2:1499504-1499523 Msa0748330:three_prime_UTR 45.0%
!! TAGAAGGGCATTCCATCCAA+TGG + chr5_2:1499519-1499538 Msa0748330:three_prime_UTR 45.0%
GTTGTATGCATAGACCGAAG+AGG + chr5_2:1499548-1499567 Msa0748330:three_prime_UTR 45.0%
GATCAGGAAGCTTACCTCTT+CGG - chr5_2:1499565-1499584 None:intergenic 45.0%
TCAATCACTCTCTTACCCGT+TGG - chr5_2:1499706-1499725 None:intergenic 45.0%
ACGGGTAAGAGAGTGATTGA+AGG + chr5_2:1499706-1499725 Msa0748330:intron 45.0%
TATTTCAGGCATGATGGCTG+AGG + chr5_2:1499847-1499866 Msa0748330:intron 45.0%
ACATACGGCTATGTCTGAAG+TGG - chr5_2:1499888-1499907 None:intergenic 45.0%
CATAGCCGTATGTTCTTGTG+TGG + chr5_2:1499895-1499914 Msa0748330:three_prime_UTR 45.0%
!!! AAATACCGGGTGTTTTGGGA+TGG + chr5_2:1500238-1500257 Msa0748330:three_prime_UTR 45.0%
TCTAGCATTCAAGAACGCCA+TGG - chr5_2:1500299-1500318 None:intergenic 45.0%
! GATTTGGTTGCAGTTGCACT+AGG + chr5_2:1500320-1500339 Msa0748330:three_prime_UTR 45.0%
GGACGAAACTGTAGTGAGTA+TGG - chr5_2:1500346-1500365 None:intergenic 45.0%
!! GGCTTATTGGGTTAGTGAGT+TGG - chr5_2:1500464-1500483 None:intergenic 45.0%
! GAAGCGAGTGAGTTGAGAGA+GGG - chr5_2:1491969-1491988 None:intergenic 50.0%
! AGAAGCGAGTGAGTTGAGAG+AGG - chr5_2:1491970-1491989 None:intergenic 50.0%
GCTTCTGCACCTTTCATGTC+AGG + chr5_2:1492152-1492171 Msa0748330:CDS 50.0%
TGCAATTCTTGGAGAGGGGA+TGG + chr5_2:1492475-1492494 Msa0748330:CDS 50.0%
TCTTGGAGAGGGGATGGAAA+TGG + chr5_2:1492481-1492500 Msa0748330:CDS 50.0%
CATGTGCGTCGAAATCTCCT+AGG + chr5_2:1492527-1492546 Msa0748330:CDS 50.0%
AGAAAGCCGGTAAGAACCCT+AGG - chr5_2:1492547-1492566 None:intergenic 50.0%
GGAAATGCCGAAAACGCCAA+GGG - chr5_2:1492659-1492678 None:intergenic 50.0%
AGGAAATGCCGAAAACGCCA+AGG - chr5_2:1492660-1492679 None:intergenic 50.0%
GGTTCGAACCCTTGACCTAT+TGG + chr5_2:1492941-1492960 Msa0748330:intron 50.0%
ACAGTCACAAGCAGACAGCT+CGG - chr5_2:1493007-1493026 None:intergenic 50.0%
TGTGACGCCAAGTGCTTTGT+CGG - chr5_2:1493189-1493208 None:intergenic 50.0%
ACACTTCACGAGGGATTCTC+TGG + chr5_2:1493206-1493225 Msa0748330:CDS 50.0%
TACCTCCCACAAACTTCCAG+GGG - chr5_2:1493315-1493334 None:intergenic 50.0%
GTACCTCCCACAAACTTCCA+GGG - chr5_2:1493316-1493335 None:intergenic 50.0%
TGTACCTCCCACAAACTTCC+AGG - chr5_2:1493317-1493336 None:intergenic 50.0%
GGAGGAAGATACGAGATCAC+GGG - chr5_2:1493468-1493487 None:intergenic 50.0%
GATGGTCAGAAAAGACGCAG+CGG + chr5_2:1493658-1493677 Msa0748330:CDS 50.0%
TTCATCCGGTTGAGGTTGCA+CGG + chr5_2:1493695-1493714 Msa0748330:CDS 50.0%
AGAATCCGTGCAACCTCAAC+CGG - chr5_2:1493703-1493722 None:intergenic 50.0%
GTTGAGGTTGCACGGATTCT+TGG + chr5_2:1493703-1493722 Msa0748330:CDS 50.0%
GATTGGGAGTCAATTGCTGC+TGG + chr5_2:1493842-1493861 Msa0748330:CDS 50.0%
TGCTACAGTGCGTCACATTG+TGG + chr5_2:1493931-1493950 Msa0748330:CDS 50.0%
ACAGTGCGTCACATTGTGGA+AGG + chr5_2:1493935-1493954 Msa0748330:CDS 50.0%
TCCCAACTAGGTGTCAAAGC+TGG + chr5_2:1494077-1494096 Msa0748330:intron 50.0%
! CCCAGCTTTGACACCTAGTT+GGG - chr5_2:1494081-1494100 None:intergenic 50.0%
CCCAACTAGGTGTCAAAGCT+GGG + chr5_2:1494078-1494097 Msa0748330:intron 50.0%
CCAACTAGGTGTCAAAGCTG+GGG + chr5_2:1494079-1494098 Msa0748330:intron 50.0%
GGACCTTCGGCAAATGTTTC+TGG + chr5_2:1494152-1494171 Msa0748330:CDS 50.0%
!! GTTTCTGGCTATGACAGAGG+AGG + chr5_2:1494167-1494186 Msa0748330:CDS 50.0%
CTTATTTGGCAACAGCGCAG+CGG - chr5_2:1495182-1495201 None:intergenic 50.0%
CTTTAACCCATGTGACTGCG+AGG - chr5_2:1495332-1495351 None:intergenic 50.0%
! CTCGCAGTCACATGGGTTAA+AGG + chr5_2:1495330-1495349 Msa0748330:intron 50.0%
GCTCCTTTGGCAAAGTTGCT+TGG + chr5_2:1495713-1495732 Msa0748330:CDS 50.0%
TGCATGCTAGTCCTTAGCCT+TGG - chr5_2:1495777-1495796 None:intergenic 50.0%
! TGCATTGGCACTGAGTTTCG+TGG - chr5_2:1496334-1496353 None:intergenic 50.0%
TAAACCAAAGCCGTGCGTTG+GGG + chr5_2:1496683-1496702 Msa0748330:CDS 50.0%
! ACCAGCTGTGGACTGCATAA+AGG - chr5_2:1496714-1496733 None:intergenic 50.0%
!! CATGTTCTGGGGTTGATCCA+TGG + chr5_2:1496841-1496860 Msa0748330:CDS 50.0%
! TGGGGTTGATCCATGGAATC+TGG + chr5_2:1496848-1496867 Msa0748330:CDS 50.0%
GAATAGGGGTCCAGATTCCA+TGG - chr5_2:1496861-1496880 None:intergenic 50.0%
GGCATTGCAGCTCACTATAG+TGG + chr5_2:1497302-1497321 Msa0748330:CDS 50.0%
TGCCCAGTGGAAAAAGCTCA+AGG + chr5_2:1497360-1497379 Msa0748330:CDS 50.0%
GCCCAGTGGAAAAAGCTCAA+GGG + chr5_2:1497361-1497380 Msa0748330:CDS 50.0%
!! CCCCTTGAGCTTTTTCCACT+GGG - chr5_2:1497365-1497384 None:intergenic 50.0%
CCCAGTGGAAAAAGCTCAAG+GGG + chr5_2:1497362-1497381 Msa0748330:CDS 50.0%
CCAGTGGAAAAAGCTCAAGG+GGG + chr5_2:1497363-1497382 Msa0748330:CDS 50.0%
GCGTACTCTGAGTGCAATGT+TGG - chr5_2:1497411-1497430 None:intergenic 50.0%
TCCACTGTTACCTCTCCACT+GGG - chr5_2:1497705-1497724 None:intergenic 50.0%
ATCCACTGTTACCTCTCCAC+TGG - chr5_2:1497706-1497725 None:intergenic 50.0%
AAGCATCACGAACCTGCAGA+CGG - chr5_2:1497805-1497824 None:intergenic 50.0%
AAAGGGGACATGATGCTGCA+GGG + chr5_2:1499392-1499411 Msa0748330:three_prime_UTR 50.0%
GCCAACTTTCTAAACCTGGC+AGG - chr5_2:1499469-1499488 None:intergenic 50.0%
GCCTCGTGGCACAATATAGA+AGG + chr5_2:1499503-1499522 Msa0748330:three_prime_UTR 50.0%
CCCTTCTATATTGTGCCACG+AGG - chr5_2:1499507-1499526 None:intergenic 50.0%
CTTATCAAACGACCAGGCTG+AGG + chr5_2:1500024-1500043 Msa0748330:intron 50.0%
GTAGACCATCCCAAAACACC+CGG - chr5_2:1500246-1500265 None:intergenic 50.0%
!!! GGTGTTTTGGGATGGTCTAC+TGG + chr5_2:1500246-1500265 Msa0748330:three_prime_UTR 50.0%
! GATGGTCTACTGGCTGTAGT+TGG + chr5_2:1500256-1500275 Msa0748330:three_prime_UTR 50.0%
! CCATGGTTTTCCATCAGGCT+TGG - chr5_2:1500282-1500301 None:intergenic 50.0%
CCAAGCCTGATGGAAAACCA+TGG + chr5_2:1500279-1500298 Msa0748330:three_prime_UTR 50.0%
! GAACGCCATGGTTTTCCATC+AGG - chr5_2:1500287-1500306 None:intergenic 50.0%
! GAGTGAGTTGAGAGAGGGTG+AGG - chr5_2:1491964-1491983 None:intergenic 55.0%
!! TACCGGCTTTCTTGCGAGCA+CGG + chr5_2:1492555-1492574 Msa0748330:CDS 55.0%
TCACAAGCAGACAGCTCGGT+TGG - chr5_2:1493003-1493022 None:intergenic 55.0%
ACTTGGCGTCACACTTCACG+AGG + chr5_2:1493196-1493215 Msa0748330:CDS 55.0%
CTTGGCGTCACACTTCACGA+GGG + chr5_2:1493197-1493216 Msa0748330:CDS 55.0%
ACTTCCAGGGGAAAACTCGC+TGG - chr5_2:1493303-1493322 None:intergenic 55.0%
TTCCCCTGGAAGTTTGTGGG+AGG + chr5_2:1493310-1493329 Msa0748330:CDS 55.0%
GATACGAGATCACGGGCCTA+AGG - chr5_2:1493461-1493480 None:intergenic 55.0%
! CCCCAGCTTTGACACCTAGT+TGG - chr5_2:1494082-1494101 None:intergenic 55.0%
!! TGCTTCACTTGGCTTGGGCT+AGG + chr5_2:1495294-1495313 Msa0748330:intron 55.0%
!! GCTTCACTTGGCTTGGGCTA+GGG + chr5_2:1495295-1495314 Msa0748330:intron 55.0%
GCCTTTATGCAGTCCACAGC+TGG + chr5_2:1496710-1496729 Msa0748330:CDS 55.0%
GGGTAAGTGGTTACCAGCTG+TGG - chr5_2:1496726-1496745 None:intergenic 55.0%
!! CCCCCTTGAGCTTTTTCCAC+TGG - chr5_2:1497366-1497385 None:intergenic 55.0%
ACCCAGTGGAGAGGTAACAG+TGG + chr5_2:1497701-1497720 Msa0748330:intron 55.0%
GCATTTGCAAGCACTCGTGC+AGG - chr5_2:1498070-1498089 None:intergenic 55.0%
!! TGGAAGTGCTTGGACACCCA+AGG + chr5_2:1499322-1499341 Msa0748330:three_prime_UTR 55.0%
GCTTGGACACCCAAGGTCAA+TGG + chr5_2:1499329-1499348 Msa0748330:three_prime_UTR 55.0%
CAAAGGGGACATGATGCTGC+AGG + chr5_2:1499391-1499410 Msa0748330:three_prime_UTR 55.0%
AACGACCAGGCTGAGGTTGA+TGG + chr5_2:1500031-1500050 Msa0748330:intron 55.0%
CTGTAGTTGGCCAAGCCTGA+TGG + chr5_2:1500269-1500288 Msa0748330:three_prime_UTR 55.0%
TAACCCAATAAGCCGGCAGC+AGG + chr5_2:1500470-1500489 Msa0748330:three_prime_UTR 55.0%
CTCAATTGACTGCCTGCTGC+CGG - chr5_2:1500485-1500504 None:intergenic 55.0%
AGCCGTGCTCGCAAGAAAGC+CGG - chr5_2:1492560-1492579 None:intergenic 60.0%
AAACTCGCTGGCAACGTCCG+AGG - chr5_2:1493291-1493310 None:intergenic 60.0%
! GTTGCCAGCGAGTTTTCCCC+TGG + chr5_2:1493296-1493315 Msa0748330:CDS 60.0%
ACCTAGGCCTCGCAGTCACA+TGG + chr5_2:1495322-1495341 Msa0748330:intron 60.0%
CCTAGGCCTCGCAGTCACAT+GGG + chr5_2:1495323-1495342 Msa0748330:intron 60.0%
CAAAGCCGTGCGTTGGGGTT+GGG + chr5_2:1496688-1496707 Msa0748330:CDS 60.0%
AAAGGCCCAACCCCAACGCA+CGG - chr5_2:1496696-1496715 None:intergenic 60.0%
!! GTTGGAAGTGCTGTGCCCAG+TGG + chr5_2:1497347-1497366 Msa0748330:CDS 60.0%
GGCTGAGGTCGCTACAGCAT+TGG + chr5_2:1499862-1499881 Msa0748330:three_prime_UTR 60.0%
!! GACCAGGCTGAGGTTGATGG+CGG + chr5_2:1500034-1500053 Msa0748330:intron 60.0%
TTCCGCCATCAACCTCAGCC+TGG - chr5_2:1500039-1500058 None:intergenic 60.0%
!! AGGCTGAGGTTGATGGCGGA+AGG + chr5_2:1500038-1500057 Msa0748330:intron 60.0%
!! GGCTGAGGTTGATGGCGGAA+GGG + chr5_2:1500039-1500058 Msa0748330:intron 60.0%
!! GCTGAGGTTGATGGCGGAAG+GGG + chr5_2:1500040-1500059 Msa0748330:three_prime_UTR 60.0%
!! GGTTGATGGCGGAAGGGGAA+TGG + chr5_2:1500045-1500064 Msa0748330:three_prime_UTR 60.0%
!! CTGCCTGCTGCCGGCTTATT+GGG - chr5_2:1500476-1500495 None:intergenic 60.0%
!! ACTGCCTGCTGCCGGCTTAT+TGG - chr5_2:1500477-1500496 None:intergenic 60.0%
!! CACTTGGCTTGGGCTAGGGC+CGG + chr5_2:1495299-1495318 Msa0748330:intron 65.0%
GTGACTGCGAGGCCTAGGTC+CGG - chr5_2:1495321-1495340 None:intergenic 65.0%
CCCATGTGACTGCGAGGCCT+AGG - chr5_2:1495326-1495345 None:intergenic 65.0%
CCAACCCCAACGCACGGCTT+TGG - chr5_2:1496690-1496709 None:intergenic 65.0%
CCAAAGCCGTGCGTTGGGGT+TGG + chr5_2:1496687-1496706 Msa0748330:CDS 65.0%
! CTTGGGCTAGGGCCGGACCT+AGG + chr5_2:1495306-1495325 Msa0748330:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 1491892 1500770 1491892 ID=Msa0748330;Name=Msa0748330
chr5_2 mRNA 1491892 1500770 1491892 ID=Msa0748330-mRNA-1;Parent=Msa0748330;Name=Msa0748330-mRNA-1;_AED=0.11;_eAED=0.11;_QI=257|1|1|1|0.91|0.95|24|1148|659
chr5_2 exon 1491892 1492173 1491892 ID=Msa0748330-mRNA-1:exon:440;Parent=Msa0748330-mRNA-1
chr5_2 exon 1492452 1492639 1492452 ID=Msa0748330-mRNA-1:exon:441;Parent=Msa0748330-mRNA-1
chr5_2 exon 1493152 1493331 1493152 ID=Msa0748330-mRNA-1:exon:442;Parent=Msa0748330-mRNA-1
chr5_2 exon 1493456 1493521 1493456 ID=Msa0748330-mRNA-1:exon:443;Parent=Msa0748330-mRNA-1
chr5_2 exon 1493640 1493732 1493640 ID=Msa0748330-mRNA-1:exon:444;Parent=Msa0748330-mRNA-1
chr5_2 exon 1493836 1493967 1493836 ID=Msa0748330-mRNA-1:exon:445;Parent=Msa0748330-mRNA-1
chr5_2 exon 1494087 1494188 1494087 ID=Msa0748330-mRNA-1:exon:446;Parent=Msa0748330-mRNA-1
chr5_2 exon 1494306 1494383 1494306 ID=Msa0748330-mRNA-1:exon:447;Parent=Msa0748330-mRNA-1
chr5_2 exon 1495680 1495751 1495680 ID=Msa0748330-mRNA-1:exon:448;Parent=Msa0748330-mRNA-1
chr5_2 exon 1495953 1496060 1495953 ID=Msa0748330-mRNA-1:exon:449;Parent=Msa0748330-mRNA-1
chr5_2 exon 1496227 1496324 1496227 ID=Msa0748330-mRNA-1:exon:450;Parent=Msa0748330-mRNA-1
chr5_2 exon 1496506 1496566 1496506 ID=Msa0748330-mRNA-1:exon:451;Parent=Msa0748330-mRNA-1
chr5_2 exon 1496669 1496731 1496669 ID=Msa0748330-mRNA-1:exon:452;Parent=Msa0748330-mRNA-1
chr5_2 exon 1496832 1496888 1496832 ID=Msa0748330-mRNA-1:exon:453;Parent=Msa0748330-mRNA-1
chr5_2 exon 1497010 1497111 1497010 ID=Msa0748330-mRNA-1:exon:454;Parent=Msa0748330-mRNA-1
chr5_2 exon 1497266 1497424 1497266 ID=Msa0748330-mRNA-1:exon:455;Parent=Msa0748330-mRNA-1
chr5_2 exon 1497582 1497713 1497582 ID=Msa0748330-mRNA-1:exon:456;Parent=Msa0748330-mRNA-1
chr5_2 exon 1497850 1497936 1497850 ID=Msa0748330-mRNA-1:exon:457;Parent=Msa0748330-mRNA-1
chr5_2 exon 1498046 1498140 1498046 ID=Msa0748330-mRNA-1:exon:458;Parent=Msa0748330-mRNA-1
chr5_2 exon 1498910 1498996 1498910 ID=Msa0748330-mRNA-1:exon:459;Parent=Msa0748330-mRNA-1
chr5_2 exon 1499116 1499569 1499116 ID=Msa0748330-mRNA-1:exon:460;Parent=Msa0748330-mRNA-1
chr5_2 exon 1499855 1499916 1499855 ID=Msa0748330-mRNA-1:exon:461;Parent=Msa0748330-mRNA-1
chr5_2 exon 1500040 1500108 1500040 ID=Msa0748330-mRNA-1:exon:462;Parent=Msa0748330-mRNA-1
chr5_2 exon 1500213 1500770 1500213 ID=Msa0748330-mRNA-1:exon:463;Parent=Msa0748330-mRNA-1
chr5_2 five_prime_UTR 1491892 1492148 1491892 ID=Msa0748330-mRNA-1:five_prime_utr;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1492149 1492173 1492149 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1492452 1492639 1492452 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1493152 1493331 1493152 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1493456 1493521 1493456 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1493640 1493732 1493640 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1493836 1493967 1493836 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1494087 1494188 1494087 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1494306 1494383 1494306 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1495680 1495751 1495680 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1495953 1496060 1495953 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1496227 1496324 1496227 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1496506 1496566 1496506 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1496669 1496731 1496669 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1496832 1496888 1496832 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1497010 1497111 1497010 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1497266 1497424 1497266 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1497582 1497713 1497582 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1497850 1497936 1497850 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1498046 1498140 1498046 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 CDS 1498910 1498991 1498910 ID=Msa0748330-mRNA-1:cds;Parent=Msa0748330-mRNA-1
chr5_2 three_prime_UTR 1498992 1498996 1498992 ID=Msa0748330-mRNA-1:three_prime_utr;Parent=Msa0748330-mRNA-1
chr5_2 three_prime_UTR 1499116 1499569 1499116 ID=Msa0748330-mRNA-1:three_prime_utr;Parent=Msa0748330-mRNA-1
chr5_2 three_prime_UTR 1499855 1499916 1499855 ID=Msa0748330-mRNA-1:three_prime_utr;Parent=Msa0748330-mRNA-1
chr5_2 three_prime_UTR 1500040 1500108 1500040 ID=Msa0748330-mRNA-1:three_prime_utr;Parent=Msa0748330-mRNA-1
chr5_2 three_prime_UTR 1500213 1500770 1500213 ID=Msa0748330-mRNA-1:three_prime_utr;Parent=Msa0748330-mRNA-1
Gene Sequence

>Msa0748330

ATGGCTTCTGCACCTTTCATGTCAGTTTCTTTGGAGTGTGTGAATGTATGCAATTCTTGGAGAGGGGATGGAAATGGAAAATATGATTGTAATCATCTATCATGTGCGTCGAAATCTCCTAGGGTTCTTACCGGCTTTCTTGCGAGCACGGCTCATCCTCATCAATATTTTTTGTTGAATGGTCGAAATGGAAGAAGTAACCAGTTTAATTTTGCATGTGAAGCTTTTAGTATAGTAGGTTCATATTCCGACAAAGCACTTGGCGTCACACTTCACGAGGGATTCTCTGGATCTATCTTTTCTAGATTTGCATCTAGAGAATGGCAGTTGTCTTGTTCTTCGGTTTTTTCCTCGGACGTTGCCAGCGAGTTTTCCCCTGGAAGTTTGTGGGAGGACCTTAGGCCCGTGATCTCGTATCTTCCTCCTAAAGAACTGGAGTTAGTCCATAATGCTTTTACGTTGGCATTTAAAGCTCACGATGGTCAGAAAAGACGCAGCGGCGAACCCTTCATCATTCATCCGGTTGAGGTTGCACGGATTCTTGGAGAACTCGAACTTGATTGGGAGTCAATTGCTGCTGGATTACTTCATGACACGGTTGAAGATACAGATGTTGTGACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTACAGTGCGTCACATTGTGGAAGGAGAGACTAAGGTGTCAAAGCTGGGGAAGTTGAAGTACAAGAATGAAAATGATTCTGTTCAAGATGTGAAAGCAGAGGACCTTCGGCAAATGTTTCTGGCTATGACAGAGGAGGTTCGTGTTATTATCGTCAAATTAGCAGACAGGTTACATAACATGCGCACTCTTTCACATATGCCTCCACATAAACAGAATAGCATTGCAATGGAGACATTACAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTATCATTTATGTACACAAATCCTGAAGATTATGCAAAGGTGAAGAGAAGAGTTGCCGACCTATTCAAAGAACATGAGAAAGATCTTTTAGAGGCGAACAAAATATTGTTAAAGAAAATCCAAGATGATCAATTCTTAGACCTTATGACAGTTAAAACGGAAGTTCGTGCTGTGTGTAAAGAGCCTTACAGTGTCTATAAAGCTGTGCTCAAATCTAAAAGCTTGATCAATGAGATTAACCAAATTGCACAGCTTCGTATCATTATTAAACCAAAGCCGTGCGTTGGGGTTGGGCCTTTATGCAGTCCACAGCTGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCTAAACCTAATGGGTACAAAAGTCTTCATAGCACTGTGATTCCATTTTTGTATGAGAGTATGTTCAGGCTTGAAATACAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCAGCTCACTATAGTGGGAGAGAATTCGTTACTGGCTTGGTTGGAAGTGCTGTGCCCAGTGGAAAAAGCTCAAGGGGGAAGACAGTGTGTCTTAGCAATGCCAACATTGCACTCAGAATTGGCTGGCTCAATGCTATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGCTCTAGGGAATTTGTGGACACTGTTACAAGAGATCTTCTGGGCAGTCGTGTCTTTGTATTTACACCCAGTGGAGAGATTAAGAATCTTCCTCAAGGTGCTACTGTGATTGACTATGCTTATATGATACACACTGAAATTGGCAACAAGATGGTAGCTGCAAAGGTCAACGGAAATCTTGTTTCTCCTGCACGAGTGCTTGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGTCAGTATTGTTAACCTCACCCAGCACTTTCTAGCAAATCAGCTTTTCAAAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGGAGTGCAAGACACAAAATAA
Protein sequence

>Msa0748330

MASAPFMSVSLECVNVCNSWRGDGNGKYDCNHLSCASKSPRVLTGFLASTAHPHQYFLLNGRNGRSNQFNFACEAFSIVGSYSDKALGVTLHEGFSGSIFSRFASREWQLSCSSVFSSDVASEFSPGSLWEDLRPVISYLPPKELELVHNAFTLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTDVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQNSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNPEDYAKVKRRVADLFKEHEKDLLEANKILLKKIQDDQFLDLMTVKTEVRAVCKEPYSVYKAVLKSKSLINEINQIAQLRIIIKPKPCVGVGPLCSPQLICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYKSLHSTVIPFLYESMFRLEIQIRTEEMDLIAERGIAAHYSGREFVTGLVGSAVPSGKSSRGKTVCLSNANIALRIGWLNAIREWQEEFVGNMSSREFVDTVTRDLLGSRVFVFTPSGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPARVLANAEVVEIITYNVSIVNLTQHFLANQLFKGISSGCNMLKHGVQDTK*