AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1184010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184010 MtrunA17_Chr8g0335211 97.608 209 5 0 50 258 12 220 1.23e-154 429
Msa1184010 MtrunA17_Chr4g0033841 40.449 89 53 0 133 221 108 196 5.98e-14 69.3
Msa1184010 MtrunA17_Chr7g0214751 30.201 149 71 5 125 241 90 237 2.01e-12 65.1
Msa1184010 MtrunA17_Chr4g0052911 33.600 125 71 2 128 240 114 238 2.33e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184010 AT3G60370.1 62.879 264 70 5 1 258 1 242 5.20e-108 312
Msa1184010 AT3G60370.2 62.879 264 70 5 1 258 30 271 1.48e-107 312
Msa1184010 AT2G43560.1 39.640 111 66 1 111 221 81 190 8.32e-16 74.7
Msa1184010 AT2G43560.2 43.820 89 50 0 133 221 46 134 9.50e-16 73.2
Msa1184010 AT4G19830.1 29.932 147 70 4 133 246 83 229 2.86e-13 67.8
Msa1184010 AT5G13410.1 31.788 151 70 5 123 241 104 253 5.18e-12 64.7

Find 51 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCTTCTCTAATAAAATT+TGG 0.135782 8_1:+19532434 None:intergenic
TGGTTCTTCTTTCACAGTTT+TGG 0.207260 8_1:+19530879 None:intergenic
AACTATATAACGCGTGATTC+GGG 0.213117 8_1:-19532234 Msa1184010:CDS
GAAACTTGCGCTTTCTGTTT+TGG 0.240114 8_1:-19532585 Msa1184010:CDS
TATTGACAGCACTTATTTAC+AGG 0.273970 8_1:-19531683 Msa1184010:CDS
TACTTTCTCAGGATGTAATA+TGG 0.285948 8_1:+19532616 None:intergenic
CTTGTTACCCATGCGAATTT+TGG 0.288794 8_1:+19531651 None:intergenic
TACCTTCTCTAATAAAATTT+GGG 0.314007 8_1:+19532435 None:intergenic
ATAATTATTCCTCCTGATCT+TGG 0.323150 8_1:-19531463 Msa1184010:CDS
TAACTATATAACGCGTGATT+CGG 0.332001 8_1:-19532235 Msa1184010:CDS
TTCCTCCTTAATACTTTCTC+AGG 0.354488 8_1:+19532605 None:intergenic
CTTCAGCACAAATATTAGTT+AGG 0.355241 8_1:-19530808 Msa1184010:three_prime_UTR
TACATCCTGAGAAAGTATTA+AGG 0.373534 8_1:-19532610 Msa1184010:CDS
CACTCTTACATGGAATCCTT+TGG 0.373861 8_1:+19532730 None:intergenic
ATAAAATTTGGGAAGTCATC+TGG 0.374287 8_1:+19532446 None:intergenic
GGTAACAAGGCATTGGTTCC+AGG 0.384493 8_1:-19531637 Msa1184010:intron
TCACGCGTTATATAGTTATC+TGG 0.398419 8_1:+19532240 None:intergenic
CACTTATTTACAGGGTTCTC+CGG 0.422942 8_1:-19531674 Msa1184010:CDS
AAAACCTGCTGACCATCCTT+TGG 0.437003 8_1:+19532171 None:intergenic
CAGGTCACATTTCACTATGT+TGG 0.449348 8_1:-19531727 Msa1184010:CDS
TTTGCATGAGAAGATAAAGT+TGG 0.475317 8_1:+19532545 None:intergenic
TGTATTTATGGATAGAGTGC+AGG 0.475495 8_1:-19532645 Msa1184010:intron
TAAATTATGATCTTGCTTCG+AGG 0.476673 8_1:-19530782 Msa1184010:three_prime_UTR
TATGTTGGCTATAATGAATC+CGG 0.489665 8_1:-19531712 Msa1184010:CDS
TCCTCCTGATCTTGGACCCC+CGG 0.496637 8_1:-19531455 Msa1184010:intron
CAAAATTCGCATGGGTAACA+AGG 0.517528 8_1:-19531650 Msa1184010:CDS
AGTGCTGTCAATACGCCGGC+CGG 0.518095 8_1:+19531693 None:intergenic
AACATCAGAGTAAAATCCTA+TGG 0.519964 8_1:+19530859 None:intergenic
TTGTCCAAAGGATGGTCAGC+AGG 0.523009 8_1:-19532175 Msa1184010:intron
TCGCATGGGTAACAAGGCAT+TGG 0.532556 8_1:-19531644 Msa1184010:CDS
AAATTCCTTTGTACAGTACA+AGG 0.543326 8_1:-19532790 Msa1184010:CDS
CTGTACCAACTTCAAAATCT+CGG 0.552576 8_1:+19532202 None:intergenic
TTCTCCGGCCAAAATTCGCA+TGG 0.552997 8_1:-19531659 Msa1184010:CDS
GGAATTAGAGACATGAGAGC+AGG 0.554241 8_1:-19531499 Msa1184010:CDS
TCTGATGTAGGATTTGAGGA+AGG 0.571358 8_1:-19531520 Msa1184010:intron
ATTAGAGACATGAGAGCAGG+TGG 0.575545 8_1:-19531496 Msa1184010:CDS
ATTGACAGCACTTATTTACA+GGG 0.593497 8_1:-19531682 Msa1184010:CDS
AACTGTGAAAGAAGAACCAT+AGG 0.596337 8_1:-19530875 Msa1184010:CDS
CTGTTGTCAATAATCGAGAA+AGG 0.598520 8_1:-19530759 Msa1184010:three_prime_UTR
GGACAAGGACAATCAACTCA+TGG 0.598798 8_1:-19532769 Msa1184010:CDS
ACTATATAACGCGTGATTCG+GGG 0.601130 8_1:-19532233 Msa1184010:CDS
CTTGTCCTTGTACTGTACAA+AGG 0.610580 8_1:+19532785 None:intergenic
CTTTGTACAGTACAAGGACA+AGG 0.612700 8_1:-19532784 Msa1184010:CDS
ACAGGTGATTGTCCAAAGGA+TGG 0.620639 8_1:-19532183 Msa1184010:CDS
GAAGATGGTGAAGATAAGAG+CGG 0.626564 8_1:+19534141 None:intergenic
TCTCCGGCCAAAATTCGCAT+GGG 0.643150 8_1:-19531658 Msa1184010:CDS
ATCCTGAGAAAGTATTAAGG+AGG 0.647507 8_1:-19532607 Msa1184010:CDS
TGGTACAGGTGATTGTCCAA+AGG 0.660317 8_1:-19532187 Msa1184010:CDS
AATAAGTGCTGTCAATACGC+CGG 0.677404 8_1:+19531689 None:intergenic
TTGGCTATAATGAATCCGGC+CGG 0.687904 8_1:-19531708 Msa1184010:CDS
CAAGGACAATCAACTCATGG+AGG 0.721666 8_1:-19532766 Msa1184010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTTAATATTTTAGTTGA+TGG - chr8_1:19530958-19530977 Msa1184010:intron 15.0%
!!! AAGTTAATATTTTAGTTGAT+GGG - chr8_1:19530959-19530978 Msa1184010:intron 15.0%
!!! TAATTTTCATCTTAATTGTT+TGG - chr8_1:19532781-19532800 Msa1184010:CDS 15.0%
!!! AATTTTCATCTTAATTGTTT+GGG - chr8_1:19532782-19532801 Msa1184010:CDS 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG + chr8_1:19533579-19533598 None:intergenic 15.0%
!!! TCACATAATTTTTTACATTA+CGG - chr8_1:19533851-19533870 Msa1184010:intron 15.0%
!!! ATTTGAAACACATATATGTA+TGG + chr8_1:19530875-19530894 None:intergenic 20.0%
!!! TATTTTTTTCTTTCTTTCTG+AGG - chr8_1:19530917-19530936 Msa1184010:CDS 20.0%
!! TTGAAAAGTTACAACAAATT+AGG - chr8_1:19531131-19531150 Msa1184010:intron 20.0%
!! TGAAAAGTTACAACAAATTA+GGG - chr8_1:19531132-19531151 Msa1184010:intron 20.0%
!! TATAAGCAATTCTTAAGTTT+AGG - chr8_1:19531430-19531449 Msa1184010:intron 20.0%
!! AAACAATTCTATTTGTTTGT+TGG - chr8_1:19531474-19531493 Msa1184010:CDS 20.0%
!! AACAATTCTATTTGTTTGTT+GGG - chr8_1:19531475-19531494 Msa1184010:CDS 20.0%
!! GTAATAAATACTTTCAACAT+TGG + chr8_1:19531777-19531796 None:intergenic 20.0%
!! ATTTATTGAAGAGATTAGAA+GGG + chr8_1:19531836-19531855 None:intergenic 20.0%
!! AATTTATTGAAGAGATTAGA+AGG + chr8_1:19531837-19531856 None:intergenic 20.0%
!! TAACTATCATACAATGAATT+AGG + chr8_1:19531943-19531962 None:intergenic 20.0%
!! TTTCATTTAATATCCTTCTA+AGG - chr8_1:19532210-19532229 Msa1184010:CDS 20.0%
!! TTCATTTAATATCCTTCTAA+GGG - chr8_1:19532211-19532230 Msa1184010:CDS 20.0%
!!! GCATTTTTTGTTTGTATTTA+TGG - chr8_1:19532234-19532253 Msa1184010:CDS 20.0%
!!! ATTATACGGATTCATATTTT+TGG + chr8_1:19532374-19532393 None:intergenic 20.0%
!! TACCTTCTCTAATAAAATTT+GGG + chr8_1:19532459-19532478 None:intergenic 20.0%
!! TTACCTTCTCTAATAAAATT+TGG + chr8_1:19532460-19532479 None:intergenic 20.0%
!! AATCATGTATGAAAAAACAA+TGG + chr8_1:19532486-19532505 None:intergenic 20.0%
!! TAAAGAAAGAAATAGTTGAT+TGG + chr8_1:19532761-19532780 None:intergenic 20.0%
!! AAGAAGTTAACACAAATATT+AGG - chr8_1:19532807-19532826 Msa1184010:intron 20.0%
!! TTAGCAATAATTATCAAACA+TGG + chr8_1:19533514-19533533 None:intergenic 20.0%
! ATATATGTATGGTATGAAAG+TGG + chr8_1:19530864-19530883 None:intergenic 25.0%
!! ATTCTGATAGTTGATATGTA+AGG - chr8_1:19531050-19531069 Msa1184010:intron 25.0%
!! AATTTTCAGTTAAGATTGCA+GGG + chr8_1:19531358-19531377 None:intergenic 25.0%
!! TAATTTTCAGTTAAGATTGC+AGG + chr8_1:19531359-19531378 None:intergenic 25.0%
! ATAAACTATCTATCCAAACA+GGG + chr8_1:19531599-19531618 None:intergenic 25.0%
! AATAAACTATCTATCCAAAC+AGG + chr8_1:19531600-19531619 None:intergenic 25.0%
!! AAATACTTTCAACATTGGTT+GGG + chr8_1:19531772-19531791 None:intergenic 25.0%
! TAAATACTTTCAACATTGGT+TGG + chr8_1:19531773-19531792 None:intergenic 25.0%
! TTTATTGAAGAGATTAGAAG+GGG + chr8_1:19531835-19531854 None:intergenic 25.0%
!! ATTACAGAGCACAAAATTTT+GGG + chr8_1:19531916-19531935 None:intergenic 25.0%
! TATCATACAATGAATTAGGT+AGG + chr8_1:19531939-19531958 None:intergenic 25.0%
! CTAAAGTAGTTAGATAAACA+TGG + chr8_1:19532036-19532055 None:intergenic 25.0%
!!! TGATAAAGCATTTCCTTTTT+TGG - chr8_1:19532073-19532092 Msa1184010:intron 25.0%
! AAAATAATGTCACTCTTACA+TGG + chr8_1:19532174-19532193 None:intergenic 25.0%
!! AGTGACATTATTTTCTTGAA+TGG - chr8_1:19532180-19532199 Msa1184010:CDS 25.0%
! TCATTTAATATCCTTCTAAG+GGG - chr8_1:19532212-19532231 Msa1184010:CDS 25.0%
!! AAGACACGTTTTTCATTATA+CGG + chr8_1:19532388-19532407 None:intergenic 25.0%
!! TTCCCAAATTTTATTAGAGA+AGG - chr8_1:19532454-19532473 Msa1184010:CDS 25.0%
! AATACTACTACTTGTATGTT+TGG + chr8_1:19532999-19533018 None:intergenic 25.0%
!!! TAAATCTATCCTTTTTTACC+TGG + chr8_1:19533275-19533294 None:intergenic 25.0%
! AAAACATTGCCTATACATAA+GGG + chr8_1:19533749-19533768 None:intergenic 25.0%
! TAAAACATTGCCTATACATA+AGG + chr8_1:19533750-19533769 None:intergenic 25.0%
!! ACATGCATAGTTTAAAATTG+TGG + chr8_1:19533896-19533915 None:intergenic 25.0%
!! AATTTTAAACTATGCATGTG+TGG - chr8_1:19533897-19533916 Msa1184010:intron 25.0%
!! ATTTTAAACTATGCATGTGT+GGG - chr8_1:19533898-19533917 Msa1184010:intron 25.0%
!!! AATCTTGTTTTGTATTTTGC+AGG - chr8_1:19533925-19533944 Msa1184010:intron 25.0%
! ATTGTTGCTGTTAAGGTTAA+TGG - chr8_1:19531107-19531126 Msa1184010:intron 30.0%
ACAACAAATTAGGGTATGTT+TGG - chr8_1:19531141-19531160 Msa1184010:intron 30.0%
TTGACTAAAAAAGACCTGTT+CGG - chr8_1:19531206-19531225 Msa1184010:intron 30.0%
AAATAATCAATAAGCTCGTG+AGG + chr8_1:19531246-19531265 None:intergenic 30.0%
! ATTTTCAGTTAAGATTGCAG+GGG + chr8_1:19531357-19531376 None:intergenic 30.0%
! TTCTATTTGTTTGTTGGGAT+AGG - chr8_1:19531480-19531499 Msa1184010:CDS 30.0%
ATAGGACTAAGATAGTTTAG+AGG - chr8_1:19531498-19531517 Msa1184010:CDS 30.0%
TTCCATTGCACTATAGTTTA+GGG - chr8_1:19531535-19531554 Msa1184010:intron 30.0%
GAGCTATAGTGTTTAAACAA+CGG - chr8_1:19531573-19531592 Msa1184010:intron 30.0%
TTGTGGAAATAAGCTGAAAA+TGG - chr8_1:19531710-19531729 Msa1184010:CDS 30.0%
!!! CACAAAATTTTGGGTTTGTT+TGG + chr8_1:19531907-19531926 None:intergenic 30.0%
! GATTACAGAGCACAAAATTT+TGG + chr8_1:19531917-19531936 None:intergenic 30.0%
!! AACTACTTTAGAACCTGATT+TGG - chr8_1:19532045-19532064 Msa1184010:intron 30.0%
CTTTATCAGAATACCAAATC+AGG + chr8_1:19532061-19532080 None:intergenic 30.0%
! AGGAATTTTACTGCCAAAAA+AGG + chr8_1:19532089-19532108 None:intergenic 30.0%
AAATTCCTTTGTACAGTACA+AGG - chr8_1:19532101-19532120 Msa1184010:intron 30.0%
AGGCACTAATAAAAAACCAA+AGG - chr8_1:19532145-19532164 Msa1184010:intron 30.0%
TACTTTCTCAGGATGTAATA+TGG + chr8_1:19532278-19532297 None:intergenic 30.0%
!! TACATCCTGAGAAAGTATTA+AGG - chr8_1:19532281-19532300 Msa1184010:intron 30.0%
TTTGCATGAGAAGATAAAGT+TGG + chr8_1:19532349-19532368 None:intergenic 30.0%
ATAAAATTTGGGAAGTCATC+TGG + chr8_1:19532448-19532467 None:intergenic 30.0%
AAAACAACTGTAACACTTAC+AGG + chr8_1:19532559-19532578 None:intergenic 30.0%
!! GTTGTTTTGTGTCAAACTTT+TGG - chr8_1:19532571-19532590 Msa1184010:CDS 30.0%
! AACTTTTGGATATGATGTTC+TGG - chr8_1:19532585-19532604 Msa1184010:CDS 30.0%
!!! GGTTTGTTAATATGCTTTTC+AGG - chr8_1:19532606-19532625 Msa1184010:CDS 30.0%
TAACTATATAACGCGTGATT+CGG - chr8_1:19532656-19532675 Msa1184010:intron 30.0%
!!! ATTTACCGAGATTTTGAAGT+TGG - chr8_1:19532684-19532703 Msa1184010:intron 30.0%
! ATTTTGCAGTGAAAACAAAC+AGG + chr8_1:19532876-19532895 None:intergenic 30.0%
!! CTTGATGAGTTTGTTGAAAT+GGG - chr8_1:19533041-19533060 Msa1184010:intron 30.0%
!! TTGATGAGTTTGTTGAAATG+GGG - chr8_1:19533042-19533061 Msa1184010:intron 30.0%
TTTGTTGAAATGGGGAAAAT+TGG - chr8_1:19533050-19533069 Msa1184010:intron 30.0%
ATTGGAAATTGATGTTTGAG+TGG - chr8_1:19533068-19533087 Msa1184010:intron 30.0%
! TATGTTGGCTATAATGAATC+CGG - chr8_1:19533179-19533198 Msa1184010:intron 30.0%
TATTGACAGCACTTATTTAC+AGG - chr8_1:19533208-19533227 Msa1184010:intron 30.0%
ATTGACAGCACTTATTTACA+GGG - chr8_1:19533209-19533228 Msa1184010:intron 30.0%
AAATCCTACATCAGAAAATG+TGG + chr8_1:19533366-19533385 None:intergenic 30.0%
! ATTTTCTGATGTAGGATTTG+AGG - chr8_1:19533367-19533386 Msa1184010:intron 30.0%
ATAATTATTCCTCCTGATCT+TGG - chr8_1:19533428-19533447 Msa1184010:intron 30.0%
AAAGAGAATAAGAGATGTAC+CGG + chr8_1:19533458-19533477 None:intergenic 30.0%
AACTTATTCCGAACATATGT+CGG - chr8_1:19533608-19533627 Msa1184010:intron 30.0%
! ATGTCTTTGATTAGAAGTGT+CGG - chr8_1:19533663-19533682 Msa1184010:intron 30.0%
GTTGCTAAAAACTTATGCTA+AGG - chr8_1:19533695-19533714 Msa1184010:intron 30.0%
GTTTATCTTCCCTTATGTAT+AGG - chr8_1:19533737-19533756 Msa1184010:intron 30.0%
!! TTGTTTTGTATTTTGCAGGT+AGG - chr8_1:19533929-19533948 Msa1184010:intron 30.0%
TTTGAGCTGAAAAATGTTGA+AGG + chr8_1:19533956-19533975 None:intergenic 30.0%
AACATCAGAGTAAAATCCTA+TGG + chr8_1:19534035-19534054 None:intergenic 30.0%
CTTCAGCACAAATATTAGTT+AGG - chr8_1:19534083-19534102 Msa1184010:intron 30.0%
TAAATTATGATCTTGCTTCG+AGG - chr8_1:19534109-19534128 Msa1184010:CDS 30.0%
GAAGAAGAAGAAGAAGAAGA+TGG + chr8_1:19530768-19530787 None:intergenic 35.0%
CGAAGTTGAATTTATGTTGC+TGG - chr8_1:19531011-19531030 Msa1184010:intron 35.0%
! AACTCTCATTGTTGCTGTTA+AGG - chr8_1:19531100-19531119 Msa1184010:intron 35.0%
! TAAGATAGTTTAGAGGTGCA+GGG - chr8_1:19531505-19531524 Msa1184010:CDS 35.0%
GTTCCATTGCACTATAGTTT+AGG - chr8_1:19531534-19531553 Msa1184010:intron 35.0%
TCCATTGCACTATAGTTTAG+GGG - chr8_1:19531536-19531555 Msa1184010:intron 35.0%
!! GTTGTTTTCAGAAGCTATCA+TGG - chr8_1:19531682-19531701 Msa1184010:CDS 35.0%
AGATTAGAAGGGGTTATGTT+TGG + chr8_1:19531825-19531844 None:intergenic 35.0%
AACAAAAAATGCCCCTTAGA+AGG + chr8_1:19532226-19532245 None:intergenic 35.0%
TGTATTTATGGATAGAGTGC+AGG - chr8_1:19532246-19532265 Msa1184010:CDS 35.0%
!! ATCCTGAGAAAGTATTAAGG+AGG - chr8_1:19532284-19532303 Msa1184010:intron 35.0%
TTCCTCCTTAATACTTTCTC+AGG + chr8_1:19532289-19532308 None:intergenic 35.0%
TCACGCGTTATATAGTTATC+TGG + chr8_1:19532654-19532673 None:intergenic 35.0%
AACTATATAACGCGTGATTC+GGG - chr8_1:19532657-19532676 Msa1184010:intron 35.0%
CTGTACCAACTTCAAAATCT+CGG + chr8_1:19532692-19532711 None:intergenic 35.0%
AATTCTTCTAGACGTACGTT+TGG - chr8_1:19532893-19532912 Msa1184010:intron 35.0%
GAAATAAGGAAGCTACCAAT+TGG + chr8_1:19532928-19532947 None:intergenic 35.0%
! CAAGTAGTAGTATTTTGCAG+TGG - chr8_1:19533005-19533024 Msa1184010:intron 35.0%
CCATTTCAACAAACTCATCA+AGG + chr8_1:19533043-19533062 None:intergenic 35.0%
!! CCTTGATGAGTTTGTTGAAA+TGG - chr8_1:19533040-19533059 Msa1184010:intron 35.0%
TGACAAAAAGCTTTCGTCAT+TGG - chr8_1:19533323-19533342 Msa1184010:intron 35.0%
! TTCTCCACATTTTCTGATGT+AGG - chr8_1:19533359-19533378 Msa1184010:intron 35.0%
AAGAGAATAAGAGATGTACC+GGG + chr8_1:19533457-19533476 None:intergenic 35.0%
CTTCTAATCAAAGACATGCT+TGG + chr8_1:19533660-19533679 None:intergenic 35.0%
TTACATTACGGCCACAATTA+TGG - chr8_1:19533863-19533882 Msa1184010:intron 35.0%
! TGGTTCTTCTTTCACAGTTT+TGG + chr8_1:19534015-19534034 None:intergenic 35.0%
AACTGTGAAAGAAGAACCAT+AGG - chr8_1:19534016-19534035 Msa1184010:intron 35.0%
CTGTTGTCAATAATCGAGAA+AGG - chr8_1:19534132-19534151 Msa1184010:CDS 35.0%
GAAGATGGTGAAGATAAGAG+CGG + chr8_1:19530753-19530772 None:intergenic 40.0%
! CTAAGATAGTTTAGAGGTGC+AGG - chr8_1:19531504-19531523 Msa1184010:CDS 40.0%
! AAGATAGTTTAGAGGTGCAG+GGG - chr8_1:19531506-19531525 Msa1184010:CDS 40.0%
ACCCCTAAACTATAGTGCAA+TGG + chr8_1:19531540-19531559 None:intergenic 40.0%
AAGCTATCATGGAAAGCTTG+TGG - chr8_1:19531693-19531712 Msa1184010:CDS 40.0%
CTTGTCCTTGTACTGTACAA+AGG + chr8_1:19532109-19532128 None:intergenic 40.0%
CTTTGTACAGTACAAGGACA+AGG - chr8_1:19532107-19532126 Msa1184010:intron 40.0%
CACTCTTACATGGAATCCTT+TGG + chr8_1:19532164-19532183 None:intergenic 40.0%
! GAAACTTGCGCTTTCTGTTT+TGG - chr8_1:19532306-19532325 Msa1184010:intron 40.0%
ACTATATAACGCGTGATTCG+GGG - chr8_1:19532658-19532677 Msa1184010:intron 40.0%
!!! CGAGATTTTGAAGTTGGTAC+AGG - chr8_1:19532690-19532709 Msa1184010:intron 40.0%
GACAATTTCAGTTCTCAGTC+TGG + chr8_1:19532842-19532861 None:intergenic 40.0%
GTTTGGTTAGAAGCTCCAAT+TGG - chr8_1:19532910-19532929 Msa1184010:intron 40.0%
GCAATCTCGACGTTGAAATA+AGG + chr8_1:19532942-19532961 None:intergenic 40.0%
TTTCAACGTCGAGATTGCAT+TGG - chr8_1:19532944-19532963 Msa1184010:intron 40.0%
TTCAACGTCGAGATTGCATT+GGG - chr8_1:19532945-19532964 Msa1184010:intron 40.0%
ATAGTGAAATGTGACCTGCA+AGG + chr8_1:19533162-19533181 None:intergenic 40.0%
CAGGTCACATTTCACTATGT+TGG - chr8_1:19533164-19533183 Msa1184010:intron 40.0%
! AATAAGTGCTGTCAATACGC+CGG + chr8_1:19533205-19533224 None:intergenic 40.0%
CACTTATTTACAGGGTTCTC+CGG - chr8_1:19533217-19533236 Msa1184010:intron 40.0%
! CTTGTTACCCATGCGAATTT+TGG + chr8_1:19533243-19533262 None:intergenic 40.0%
CAAAATTCGCATGGGTAACA+AGG - chr8_1:19533241-19533260 Msa1184010:intron 40.0%
!! GCATTGGTTCCAGGTAAAAA+AGG - chr8_1:19533263-19533282 Msa1184010:intron 40.0%
TCTGATGTAGGATTTGAGGA+AGG - chr8_1:19533371-19533390 Msa1184010:intron 40.0%
AGAGAATAAGAGATGTACCG+GGG + chr8_1:19533456-19533475 None:intergenic 40.0%
GGTGTCAACATGTACATGTT+CGG + chr8_1:19533558-19533577 None:intergenic 40.0%
GAGAGAGAGAGAGAGTTACA+TGG + chr8_1:19530813-19530832 None:intergenic 45.0%
AAGTAAGTGATGGTCCGAAC+AGG + chr8_1:19531223-19531242 None:intergenic 45.0%
! AGATAGTTTAGAGGTGCAGG+GGG - chr8_1:19531507-19531526 Msa1184010:CDS 45.0%
GTTTAAACAACGGCCCTGTT+TGG - chr8_1:19531583-19531602 Msa1184010:intron 45.0%
GGACAAGGACAATCAACTCA+TGG - chr8_1:19532122-19532141 Msa1184010:intron 45.0%
CAAGGACAATCAACTCATGG+AGG - chr8_1:19532125-19532144 Msa1184010:intron 45.0%
CTTACAGGAGAGACATCACA+GGG + chr8_1:19532544-19532563 None:intergenic 45.0%
ACTTACAGGAGAGACATCAC+AGG + chr8_1:19532545-19532564 None:intergenic 45.0%
TGGTACAGGTGATTGTCCAA+AGG - chr8_1:19532704-19532723 Msa1184010:intron 45.0%
ACAGGTGATTGTCCAAAGGA+TGG - chr8_1:19532708-19532727 Msa1184010:intron 45.0%
AAAACCTGCTGACCATCCTT+TGG + chr8_1:19532723-19532742 None:intergenic 45.0%
TACAGTATACCATGCCTTGC+AGG - chr8_1:19533145-19533164 Msa1184010:intron 45.0%
TTGGCTATAATGAATCCGGC+CGG - chr8_1:19533183-19533202 Msa1184010:intron 45.0%
!! TTACCCATGCGAATTTTGGC+CGG + chr8_1:19533239-19533258 None:intergenic 45.0%
GGAATTAGAGACATGAGAGC+AGG - chr8_1:19533392-19533411 Msa1184010:intron 45.0%
ATTAGAGACATGAGAGCAGG+TGG - chr8_1:19533395-19533414 Msa1184010:intron 45.0%
GAGAATAAGAGATGTACCGG+GGG + chr8_1:19533455-19533474 None:intergenic 45.0%
TCAAACATGGAAAGACTCGC+AGG + chr8_1:19533501-19533520 None:intergenic 45.0%
GTCTGACACCGACATATGTT+CGG + chr8_1:19533619-19533638 None:intergenic 45.0%
TTGCTTTCGCGATGTAGTTG+TGG - chr8_1:19533825-19533844 Msa1184010:intron 45.0%
GTGGCTCACAACCATAATTG+TGG + chr8_1:19533877-19533896 None:intergenic 45.0%
GCTCGTGAGGAAGTAAGTGA+TGG + chr8_1:19531233-19531252 None:intergenic 50.0%
TTGTCCAAAGGATGGTCAGC+AGG - chr8_1:19532716-19532735 Msa1184010:intron 50.0%
GAAATGTGACCTGCAAGGCA+TGG + chr8_1:19533157-19533176 None:intergenic 50.0%
TTCTCCGGCCAAAATTCGCA+TGG - chr8_1:19533232-19533251 Msa1184010:intron 50.0%
TCTCCGGCCAAAATTCGCAT+GGG - chr8_1:19533233-19533252 Msa1184010:intron 50.0%
TCGCATGGGTAACAAGGCAT+TGG - chr8_1:19533247-19533266 Msa1184010:intron 50.0%
!! GGTAACAAGGCATTGGTTCC+AGG - chr8_1:19533254-19533273 Msa1184010:intron 50.0%
CTCGCAGGTACAGTAGTGAA+TGG + chr8_1:19533486-19533505 None:intergenic 50.0%
AGTGCTGTCAATACGCCGGC+CGG + chr8_1:19533201-19533220 None:intergenic 60.0%
TCCTCCTGATCTTGGACCCC+CGG - chr8_1:19533436-19533455 Msa1184010:intron 60.0%
TGTACCGGGGGTCCAAGATC+AGG + chr8_1:19533443-19533462 None:intergenic 60.0%
ACCGGGGGTCCAAGATCAGG+AGG + chr8_1:19533440-19533459 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 19530705 19534208 19530705 ID=Msa1184010;Name=Msa1184010
chr8_1 mRNA 19530705 19534208 19530705 ID=Msa1184010-mRNA-1;Parent=Msa1184010;Name=Msa1184010-mRNA-1;_AED=0.10;_eAED=0.10;_QI=39|1|1|1|0.83|0.85|7|142|258
chr8_1 exon 19530705 19530966 19530705 ID=Msa1184010-mRNA-1:exon:7569;Parent=Msa1184010-mRNA-1
chr8_1 exon 19531456 19531532 19531456 ID=Msa1184010-mRNA-1:exon:7568;Parent=Msa1184010-mRNA-1
chr8_1 exon 19531638 19531746 19531638 ID=Msa1184010-mRNA-1:exon:7567;Parent=Msa1184010-mRNA-1
chr8_1 exon 19532176 19532285 19532176 ID=Msa1184010-mRNA-1:exon:7566;Parent=Msa1184010-mRNA-1
chr8_1 exon 19532438 19532652 19532438 ID=Msa1184010-mRNA-1:exon:7565;Parent=Msa1184010-mRNA-1
chr8_1 exon 19532739 19532814 19532739 ID=Msa1184010-mRNA-1:exon:7564;Parent=Msa1184010-mRNA-1
chr8_1 exon 19534100 19534208 19534100 ID=Msa1184010-mRNA-1:exon:7563;Parent=Msa1184010-mRNA-1
chr8_1 five_prime_UTR 19534170 19534208 19534170 ID=Msa1184010-mRNA-1:five_prime_utr;Parent=Msa1184010-mRNA-1
chr8_1 CDS 19534100 19534169 19534100 ID=Msa1184010-mRNA-1:cds;Parent=Msa1184010-mRNA-1
chr8_1 CDS 19532739 19532814 19532739 ID=Msa1184010-mRNA-1:cds;Parent=Msa1184010-mRNA-1
chr8_1 CDS 19532438 19532652 19532438 ID=Msa1184010-mRNA-1:cds;Parent=Msa1184010-mRNA-1
chr8_1 CDS 19532176 19532285 19532176 ID=Msa1184010-mRNA-1:cds;Parent=Msa1184010-mRNA-1
chr8_1 CDS 19531638 19531746 19531638 ID=Msa1184010-mRNA-1:cds;Parent=Msa1184010-mRNA-1
chr8_1 CDS 19531456 19531532 19531456 ID=Msa1184010-mRNA-1:cds;Parent=Msa1184010-mRNA-1
chr8_1 CDS 19530847 19530966 19530847 ID=Msa1184010-mRNA-1:cds;Parent=Msa1184010-mRNA-1
chr8_1 three_prime_UTR 19530705 19530846 19530705 ID=Msa1184010-mRNA-1:three_prime_utr;Parent=Msa1184010-mRNA-1
Gene Sequence

>Msa1184010

ATGCTACCGCTCTTATCTTCACCATCTTCTTCTTCTTCTTCTTCTTCTTCACTCATGCAATCTTTTCCATTAAAATTCCTTTGTACAGTACAAGGACAAGGACAATCAACTCATGGAGGCACTAATAAAAAACCAAAGGATTCCATAGTGCAGGATAACACCATATTACATCCTGAGAAAGTATTAAGGAGGAAACTTGCGCTTTCTGTTTTGGTCTCAACTTGTGTTTTTCCAACTTTATCTTCTCATGCAAAGACCAAAAATATGAATCCGTATAATGAAAAACGTGTCTTGCAACAAAACAAGAATATACAAAAACAAAACAACGCACCAGATGACTTCCCAAATTTTATTAGAGAAGGTTTTGAAGTCAAAGTAATAGCACCAGATAACTATATAACGCGTGATTCGGGGCTCATTTACCGAGATTTTGAAGTTGGTACAGGTGATTGTCCAAAGGATGGTCAGCAGGTCACATTTCACTATGTTGGCTATAATGAATCCGGCCGGCGTATTGACAGCACTTATTTACAGGGTTCTCCGGCCAAAATTCGCATGGGTAACAAGGCATTGGTTCCAGGATTTGAGGAAGGAATTAGAGACATGAGAGCAGGTGGAAAGAGAAGAATAATTATTCCTCCTGATCTTGGACCCCCGGTAGGACCTTCAACATTTTTCAGCTCAAAACAATTTGAAGTTTTTGATGTTGAATTATTAAGCATCCAAAACTGTGAAAGAAGAACCATAGGATTTTACTCTGATGTTGTATGCAATTGA

Protein sequence

>Msa1184010

MLPLLSSPSSSSSSSSSLMQSFPLKFLCTVQGQGQSTHGGTNKKPKDSIVQDNTILHPEKVLRRKLALSVLVSTCVFPTLSSHAKTKNMNPYNEKRVLQQNKNIQKQNNAPDDFPNFIREGFEVKVIAPDNYITRDSGLIYRDFEVGTGDCPKDGQQVTFHYVGYNESGRRIDSTYLQGSPAKIRMGNKALVPGFEEGIRDMRAGGKRRIIIPPDLGPPVGPSTFFSSKQFEVFDVELLSIQNCERRTIGFYSDVVCN*