AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0679780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0679780 MtrunA17_Chr4g0025891 97.340 188 5 0 1 188 1 188 8.63e-133 369
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0679780 AT2G27290.1 61.658 193 54 4 4 181 3 190 5.76e-62 191

Find 47 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTGTCATTGTTGGATACT+TGG 0.270203 4_4:+38170506 None:intergenic
TACTTCTTGGTTACTTCTTC+AGG 0.280999 4_4:+38170312 None:intergenic
ACAAAGCTGCATCTCCAATT+AGG 0.288679 4_4:-38168968 Msa0679780:CDS
AGCTATTGTTGACAGTAATA+TGG 0.296152 4_4:+38168758 None:intergenic
TTGATTATCAAGATTGTATA+GGG 0.301442 4_4:+38170566 None:intergenic
ATCTTTCTTTCTTTCTCTGT+TGG 0.335428 4_4:-38170610 Msa0679780:five_prime_UTR
AGCTTCAAGACCATACTTCT+TGG 0.339383 4_4:+38170299 None:intergenic
ATGGTCTTGAAGCTGGTCTT+TGG 0.345812 4_4:-38170290 Msa0679780:CDS
GGAGATGAAAATATGATTAC+AGG 0.350066 4_4:+38168824 None:intergenic
AAGGAGTTGCTAGCAAAATA+TGG 0.352829 4_4:-38169251 Msa0679780:CDS
TTTGATTATCAAGATTGTAT+AGG 0.354084 4_4:+38170565 None:intergenic
ACTGTGGGTGGAAACCTAAT+TGG 0.379765 4_4:+38168954 None:intergenic
AAAAGTCGGTACCTTTGCTT+TGG 0.406424 4_4:-38169003 Msa0679780:CDS
CAATCCAACCAGCTACGATT+GGG 0.413841 4_4:+38168922 None:intergenic
GAAGAAGTAACCAAGAAGTA+TGG 0.441811 4_4:-38170309 Msa0679780:CDS
ATTAGATTTACGTGACTGAA+TGG 0.446882 4_4:+38170407 None:intergenic
CCAATCCAACCAGCTACGAT+TGG 0.459512 4_4:+38168921 None:intergenic
TGTTATGTGTTAATCAATGC+TGG 0.468712 4_4:-38169176 Msa0679780:CDS
CCAATCGTAGCTGGTTGGAT+TGG 0.470086 4_4:-38168921 Msa0679780:CDS
TTCAGGTGAAGAATTCTTTG+AGG 0.474321 4_4:+38170329 None:intergenic
AAGAAGTATGGTCTTGAAGC+TGG 0.499317 4_4:-38170297 Msa0679780:CDS
GGAATCACTACTGATGCAAC+CGG 0.505413 4_4:-38169029 Msa0679780:CDS
TGTTCAAACTTTGCTTCAGA+AGG 0.506472 4_4:-38169147 Msa0679780:intron
GCTCTTACCCCAATCGTAGC+TGG 0.519207 4_4:-38168930 Msa0679780:CDS
GGGGAACAACAGAAATCAAA+AGG 0.520589 4_4:-38169284 Msa0679780:CDS
TAAAGATAAGTAGCTAATAG+TGG 0.534351 4_4:-38168886 Msa0679780:exon
TTACCCCAATCGTAGCTGGT+TGG 0.540207 4_4:-38168926 Msa0679780:CDS
CTGTGGAAACAATATTCCTC+TGG 0.541815 4_4:+38168797 None:intergenic
TTTCAGTTCAAAGGAAGAAG+GGG 0.549822 4_4:-38169303 Msa0679780:CDS
TCTTGAAGCTGGTCTTTGGA+AGG 0.564484 4_4:-38170286 Msa0679780:intron
GAATATTGTTTCCACAGTCG+TGG 0.574282 4_4:-38168791 Msa0679780:three_prime_UTR
AAACAATATTCCTCTGGCAA+TGG 0.578995 4_4:+38168803 None:intergenic
AGAGATCAATGACAGAGTGA+TGG 0.584508 4_4:+38169208 None:intergenic
GATTTACATGTCCACGACTG+TGG 0.584978 4_4:+38168780 None:intergenic
CTCAGAAAAGAAGTACAAGA+AGG 0.589331 4_4:+38170465 None:intergenic
GATCAATGACAGAGTGATGG+AGG 0.597462 4_4:+38169211 None:intergenic
AAAGAAGTACAAGAAGGTGA+TGG 0.605143 4_4:+38170471 None:intergenic
ATCAAAAGGTGATCAAGCCA+AGG 0.614436 4_4:-38169270 Msa0679780:CDS
GGGGTAAGAGCTACTGTGGG+TGG 0.621082 4_4:+38168942 None:intergenic
CAATGACAGAGTGATGGAGG+TGG 0.642325 4_4:+38169214 None:intergenic
GATTGGGGTAAGAGCTACTG+TGG 0.646696 4_4:+38168938 None:intergenic
AATCCAACCAGCTACGATTG+GGG 0.648062 4_4:+38168923 None:intergenic
ATTATACTACAATCAAACAC+TGG 0.651914 4_4:+38168851 None:intergenic
TGCTGCATATGCCAAAGCAA+AGG 0.690167 4_4:+38168992 None:intergenic
GAGTTGCTAGCAAAATATGG+AGG 0.712427 4_4:-38169248 Msa0679780:CDS
ATTGGGGTAAGAGCTACTGT+GGG 0.725389 4_4:+38168939 None:intergenic
AGCTGTTAAAGAGAAAACTG+AGG 0.740712 4_4:-38170364 Msa0679780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGAAGGAAAAAAAAA+AGG + chr4_4:38169230-38169249 None:intergenic 15.0%
!!! ATTTAAAGCAATAAAAATGA+AGG + chr4_4:38169242-38169261 None:intergenic 15.0%
!!! GTTCTAAAAAGTATATATAA+AGG - chr4_4:38169296-38169315 Msa0679780:CDS 15.0%
!! TCTAAATTTCTACTTTAAAT+TGG + chr4_4:38169701-38169720 None:intergenic 15.0%
!!! AAATATAAGTTGAGTTTTTA+AGG - chr4_4:38169826-38169845 Msa0679780:intron 15.0%
!! AAAAATGAAGGAAAAAAAAA+AGG + chr4_4:38169230-38169249 None:intergenic 15.0%
!!! ATTTAAAGCAATAAAAATGA+AGG + chr4_4:38169242-38169261 None:intergenic 15.0%
!!! GTTCTAAAAAGTATATATAA+AGG - chr4_4:38169296-38169315 Msa0679780:CDS 15.0%
!! TCTAAATTTCTACTTTAAAT+TGG + chr4_4:38169701-38169720 None:intergenic 15.0%
!!! AAATATAAGTTGAGTTTTTA+AGG - chr4_4:38169826-38169845 Msa0679780:intron 15.0%
!! TTGATTATCAAGATTGTATA+GGG + chr4_4:38168790-38168809 None:intergenic 20.0%
!! TTTGATTATCAAGATTGTAT+AGG + chr4_4:38168791-38168810 None:intergenic 20.0%
!! AATAAACAAGAGAAAGAAAT+GGG + chr4_4:38169095-38169114 None:intergenic 20.0%
!! AAATAAACAAGAGAAAGAAA+TGG + chr4_4:38169096-38169115 None:intergenic 20.0%
!!! TTTCTTTCTCTTGTTTATTT+TGG - chr4_4:38169096-38169115 Msa0679780:intron 20.0%
!! TTGGTTTAATTATGATTATG+TGG - chr4_4:38169115-38169134 Msa0679780:intron 20.0%
!! TATAAAGGATATTCAAAGAT+AGG - chr4_4:38169311-38169330 Msa0679780:intron 20.0%
!!! TTACCATTGAGTTTTATTTT+AGG - chr4_4:38169514-38169533 Msa0679780:intron 20.0%
!! AAACCTAAAATAAAACTCAA+TGG + chr4_4:38169520-38169539 None:intergenic 20.0%
!! TGTGTGTAAAATGAAAATTA+TGG - chr4_4:38170015-38170034 Msa0679780:intron 20.0%
!! ATTATACTTAAATCCACATT+GGG + chr4_4:38170250-38170269 None:intergenic 20.0%
!!! CTATAATTGTTTTGAATGAT+TGG - chr4_4:38170659-38170678 Msa0679780:five_prime_UTR 20.0%
!! TTGATTATCAAGATTGTATA+GGG + chr4_4:38168790-38168809 None:intergenic 20.0%
!! TTTGATTATCAAGATTGTAT+AGG + chr4_4:38168791-38168810 None:intergenic 20.0%
!! AATAAACAAGAGAAAGAAAT+GGG + chr4_4:38169095-38169114 None:intergenic 20.0%
!! AAATAAACAAGAGAAAGAAA+TGG + chr4_4:38169096-38169115 None:intergenic 20.0%
!!! TTTCTTTCTCTTGTTTATTT+TGG - chr4_4:38169096-38169115 Msa0679780:intron 20.0%
!! TTGGTTTAATTATGATTATG+TGG - chr4_4:38169115-38169134 Msa0679780:intron 20.0%
!! TATAAAGGATATTCAAAGAT+AGG - chr4_4:38169311-38169330 Msa0679780:intron 20.0%
!!! TTACCATTGAGTTTTATTTT+AGG - chr4_4:38169514-38169533 Msa0679780:intron 20.0%
!! AAACCTAAAATAAAACTCAA+TGG + chr4_4:38169520-38169539 None:intergenic 20.0%
!! TGTGTGTAAAATGAAAATTA+TGG - chr4_4:38170015-38170034 Msa0679780:intron 20.0%
!! ATTATACTTAAATCCACATT+GGG + chr4_4:38170250-38170269 None:intergenic 20.0%
! AAAAGATGAATTTCTCACTT+AGG + chr4_4:38169167-38169186 None:intergenic 25.0%
!! AAGTGAGAAATTCATCTTTT+TGG - chr4_4:38169167-38169186 Msa0679780:CDS 25.0%
!! AGTGAGAAATTCATCTTTTT+GGG - chr4_4:38169168-38169187 Msa0679780:CDS 25.0%
!! ATTTGTTTCCTTGATTTTTG+CGG - chr4_4:38169856-38169875 Msa0679780:intron 25.0%
! ACTAATGATTGAAAATCGTT+TGG + chr4_4:38169958-38169977 None:intergenic 25.0%
! CATTATACTTAAATCCACAT+TGG + chr4_4:38170251-38170270 None:intergenic 25.0%
! TAAAGATAAGTAGCTAATAG+TGG - chr4_4:38170467-38170486 Msa0679780:CDS 25.0%
! ATTATACTACAATCAAACAC+TGG + chr4_4:38170505-38170524 None:intergenic 25.0%
! AAAAGATGAATTTCTCACTT+AGG + chr4_4:38169167-38169186 None:intergenic 25.0%
!! AAGTGAGAAATTCATCTTTT+TGG - chr4_4:38169167-38169186 Msa0679780:CDS 25.0%
!! AGTGAGAAATTCATCTTTTT+GGG - chr4_4:38169168-38169187 Msa0679780:CDS 25.0%
!! ATTTGTTTCCTTGATTTTTG+CGG - chr4_4:38169856-38169875 Msa0679780:intron 25.0%
! ACTAATGATTGAAAATCGTT+TGG + chr4_4:38169958-38169977 None:intergenic 25.0%
! CATTATACTTAAATCCACAT+TGG + chr4_4:38170251-38170270 None:intergenic 25.0%
! TAAAGATAAGTAGCTAATAG+TGG - chr4_4:38170467-38170486 Msa0679780:CDS 25.0%
! ATTATACTACAATCAAACAC+TGG + chr4_4:38170505-38170524 None:intergenic 25.0%
ATCTTTCTTTCTTTCTCTGT+TGG - chr4_4:38168743-38168762 Msa0679780:three_prime_UTR 30.0%
AACAAAAACGTTGTCATTGT+TGG + chr4_4:38168858-38168877 None:intergenic 30.0%
ATTAGATTTACGTGACTGAA+TGG + chr4_4:38168949-38168968 None:intergenic 30.0%
! ATTTTATTGCCGAAATTTGC+AGG - chr4_4:38169334-38169353 Msa0679780:intron 30.0%
! TTTTATTGCCGAAATTTGCA+GGG - chr4_4:38169335-38169354 Msa0679780:intron 30.0%
! TTTTCTTGTCATGTAGAACT+TGG - chr4_4:38169425-38169444 Msa0679780:intron 30.0%
TTTCTTGTCATGTAGAACTT+GGG - chr4_4:38169426-38169445 Msa0679780:intron 30.0%
CAGTATGCTAAAACAAGAAA+TGG + chr4_4:38169548-38169567 None:intergenic 30.0%
! TGTATCTTTCCCTGATTTTA+GGG - chr4_4:38169566-38169585 Msa0679780:intron 30.0%
TTCAGTACAGAATTTCTTCA+AGG + chr4_4:38169623-38169642 None:intergenic 30.0%
TTTGAACGACATTCAAACAT+TGG + chr4_4:38169659-38169678 None:intergenic 30.0%
TATCTCAGCTGTAAAATTGT+TGG + chr4_4:38169735-38169754 None:intergenic 30.0%
!! TGACATGGGTTTTATACTTA+TGG - chr4_4:38169908-38169927 Msa0679780:intron 30.0%
!! GACATGGGTTTTATACTTAT+GGG - chr4_4:38169909-38169928 Msa0679780:intron 30.0%
! CATTTTACACACAGACTTTA+GGG + chr4_4:38170008-38170027 None:intergenic 30.0%
! TCATTTTACACACAGACTTT+AGG + chr4_4:38170009-38170028 None:intergenic 30.0%
! TTTGCAGATTTTCAGTTCAA+AGG - chr4_4:38170041-38170060 Msa0679780:intron 30.0%
! ATTTTCAGTTCAAAGGAAGA+AGG - chr4_4:38170048-38170067 Msa0679780:intron 30.0%
! TTTTCAGTTCAAAGGAAGAA+GGG - chr4_4:38170049-38170068 Msa0679780:intron 30.0%
TGTTATGTGTTAATCAATGC+TGG - chr4_4:38170177-38170196 Msa0679780:intron 30.0%
GGAGATGAAAATATGATTAC+AGG + chr4_4:38170532-38170551 None:intergenic 30.0%
AGCTATTGTTGACAGTAATA+TGG + chr4_4:38170598-38170617 None:intergenic 30.0%
ATCTTTCTTTCTTTCTCTGT+TGG - chr4_4:38168743-38168762 Msa0679780:three_prime_UTR 30.0%
AACAAAAACGTTGTCATTGT+TGG + chr4_4:38168858-38168877 None:intergenic 30.0%
ATTAGATTTACGTGACTGAA+TGG + chr4_4:38168949-38168968 None:intergenic 30.0%
! ATTTTATTGCCGAAATTTGC+AGG - chr4_4:38169334-38169353 Msa0679780:intron 30.0%
! TTTTATTGCCGAAATTTGCA+GGG - chr4_4:38169335-38169354 Msa0679780:intron 30.0%
! TTTTCTTGTCATGTAGAACT+TGG - chr4_4:38169425-38169444 Msa0679780:intron 30.0%
TTTCTTGTCATGTAGAACTT+GGG - chr4_4:38169426-38169445 Msa0679780:intron 30.0%
CAGTATGCTAAAACAAGAAA+TGG + chr4_4:38169548-38169567 None:intergenic 30.0%
! TGTATCTTTCCCTGATTTTA+GGG - chr4_4:38169566-38169585 Msa0679780:intron 30.0%
TTCAGTACAGAATTTCTTCA+AGG + chr4_4:38169623-38169642 None:intergenic 30.0%
TTTGAACGACATTCAAACAT+TGG + chr4_4:38169659-38169678 None:intergenic 30.0%
TATCTCAGCTGTAAAATTGT+TGG + chr4_4:38169735-38169754 None:intergenic 30.0%
!! TGACATGGGTTTTATACTTA+TGG - chr4_4:38169908-38169927 Msa0679780:intron 30.0%
!! GACATGGGTTTTATACTTAT+GGG - chr4_4:38169909-38169928 Msa0679780:intron 30.0%
! CATTTTACACACAGACTTTA+GGG + chr4_4:38170008-38170027 None:intergenic 30.0%
! TCATTTTACACACAGACTTT+AGG + chr4_4:38170009-38170028 None:intergenic 30.0%
! TTTGCAGATTTTCAGTTCAA+AGG - chr4_4:38170041-38170060 Msa0679780:intron 30.0%
! ATTTTCAGTTCAAAGGAAGA+AGG - chr4_4:38170048-38170067 Msa0679780:intron 30.0%
! TTTTCAGTTCAAAGGAAGAA+GGG - chr4_4:38170049-38170068 Msa0679780:intron 30.0%
TGTTATGTGTTAATCAATGC+TGG - chr4_4:38170177-38170196 Msa0679780:intron 30.0%
GGAGATGAAAATATGATTAC+AGG + chr4_4:38170532-38170551 None:intergenic 30.0%
AGCTATTGTTGACAGTAATA+TGG + chr4_4:38170598-38170617 None:intergenic 30.0%
! AAAGAAGTACAAGAAGGTGA+TGG + chr4_4:38168885-38168904 None:intergenic 35.0%
! CTCAGAAAAGAAGTACAAGA+AGG + chr4_4:38168891-38168910 None:intergenic 35.0%
AGCTGTTAAAGAGAAAACTG+AGG - chr4_4:38168989-38169008 Msa0679780:CDS 35.0%
TTCAGGTGAAGAATTCTTTG+AGG + chr4_4:38169027-38169046 None:intergenic 35.0%
TACTTCTTGGTTACTTCTTC+AGG + chr4_4:38169044-38169063 None:intergenic 35.0%
GAAGAAGTAACCAAGAAGTA+TGG - chr4_4:38169044-38169063 Msa0679780:intron 35.0%
TTTCCTTTCCCTGCAAATTT+CGG + chr4_4:38169346-38169365 None:intergenic 35.0%
! CTGTATCTTTCCCTGATTTT+AGG - chr4_4:38169565-38169584 Msa0679780:intron 35.0%
! GTATCTTTCCCTGATTTTAG+GGG - chr4_4:38169567-38169586 Msa0679780:intron 35.0%
! ATTTTGCTCCCCTAAAATCA+GGG + chr4_4:38169578-38169597 None:intergenic 35.0%
! TATTTTGCTCCCCTAAAATC+AGG + chr4_4:38169579-38169598 None:intergenic 35.0%
GCTGTAAAATTGTTGGAACT+TGG + chr4_4:38169728-38169747 None:intergenic 35.0%
!! TTTGCGGACTATCGTTTTAA+TGG - chr4_4:38169872-38169891 Msa0679780:intron 35.0%
GAGAGGATGAATAATGACAT+GGG - chr4_4:38169894-38169913 Msa0679780:intron 35.0%
TTTCAGTTCAAAGGAAGAAG+GGG - chr4_4:38170050-38170069 Msa0679780:intron 35.0%
! ATATTTTGCTAGCAACTCCT+TGG + chr4_4:38170103-38170122 None:intergenic 35.0%
AAGGAGTTGCTAGCAAAATA+TGG - chr4_4:38170102-38170121 Msa0679780:intron 35.0%
TGTTCAAACTTTGCTTCAGA+AGG - chr4_4:38170206-38170225 Msa0679780:intron 35.0%
CATTATGTCTGTATATCTGC+AGG - chr4_4:38170299-38170318 Msa0679780:CDS 35.0%
AAACAATATTCCTCTGGCAA+TGG + chr4_4:38170553-38170572 None:intergenic 35.0%
! AAAGAAGTACAAGAAGGTGA+TGG + chr4_4:38168885-38168904 None:intergenic 35.0%
! CTCAGAAAAGAAGTACAAGA+AGG + chr4_4:38168891-38168910 None:intergenic 35.0%
AGCTGTTAAAGAGAAAACTG+AGG - chr4_4:38168989-38169008 Msa0679780:CDS 35.0%
TTCAGGTGAAGAATTCTTTG+AGG + chr4_4:38169027-38169046 None:intergenic 35.0%
TACTTCTTGGTTACTTCTTC+AGG + chr4_4:38169044-38169063 None:intergenic 35.0%
GAAGAAGTAACCAAGAAGTA+TGG - chr4_4:38169044-38169063 Msa0679780:intron 35.0%
TTTCCTTTCCCTGCAAATTT+CGG + chr4_4:38169346-38169365 None:intergenic 35.0%
! CTGTATCTTTCCCTGATTTT+AGG - chr4_4:38169565-38169584 Msa0679780:intron 35.0%
! GTATCTTTCCCTGATTTTAG+GGG - chr4_4:38169567-38169586 Msa0679780:intron 35.0%
! ATTTTGCTCCCCTAAAATCA+GGG + chr4_4:38169578-38169597 None:intergenic 35.0%
! TATTTTGCTCCCCTAAAATC+AGG + chr4_4:38169579-38169598 None:intergenic 35.0%
GCTGTAAAATTGTTGGAACT+TGG + chr4_4:38169728-38169747 None:intergenic 35.0%
!! TTTGCGGACTATCGTTTTAA+TGG - chr4_4:38169872-38169891 Msa0679780:intron 35.0%
GAGAGGATGAATAATGACAT+GGG - chr4_4:38169894-38169913 Msa0679780:intron 35.0%
TTTCAGTTCAAAGGAAGAAG+GGG - chr4_4:38170050-38170069 Msa0679780:intron 35.0%
! ATATTTTGCTAGCAACTCCT+TGG + chr4_4:38170103-38170122 None:intergenic 35.0%
AAGGAGTTGCTAGCAAAATA+TGG - chr4_4:38170102-38170121 Msa0679780:intron 35.0%
TGTTCAAACTTTGCTTCAGA+AGG - chr4_4:38170206-38170225 Msa0679780:intron 35.0%
CATTATGTCTGTATATCTGC+AGG - chr4_4:38170299-38170318 Msa0679780:CDS 35.0%
AAACAATATTCCTCTGGCAA+TGG + chr4_4:38170553-38170572 None:intergenic 35.0%
CGTTGTCATTGTTGGATACT+TGG + chr4_4:38168850-38168869 None:intergenic 40.0%
AGCTTCAAGACCATACTTCT+TGG + chr4_4:38169057-38169076 None:intergenic 40.0%
! AAGAAGTATGGTCTTGAAGC+TGG - chr4_4:38169056-38169075 Msa0679780:intron 40.0%
GGGAGCAAAATATGTGTTGT+GGG - chr4_4:38169587-38169606 Msa0679780:intron 40.0%
AAATTGGCGACACAAGTCAT+CGG + chr4_4:38169685-38169704 None:intergenic 40.0%
ACGATAGTCCGCAAAAATCA+AGG + chr4_4:38169867-38169886 None:intergenic 40.0%
!! GGACTATCGTTTTAATGGAG+AGG - chr4_4:38169877-38169896 Msa0679780:intron 40.0%
GGAGAGGATGAATAATGACA+TGG - chr4_4:38169893-38169912 Msa0679780:intron 40.0%
GGGGAACAACAGAAATCAAA+AGG - chr4_4:38170069-38170088 Msa0679780:intron 40.0%
ATCAAAAGGTGATCAAGCCA+AGG - chr4_4:38170083-38170102 Msa0679780:intron 40.0%
GAGTTGCTAGCAAAATATGG+AGG - chr4_4:38170105-38170124 Msa0679780:intron 40.0%
AGAGATCAATGACAGAGTGA+TGG + chr4_4:38170148-38170167 None:intergenic 40.0%
TGCTCATACATAACCCAATG+TGG - chr4_4:38170234-38170253 Msa0679780:intron 40.0%
ATGTCTGTATATCTGCAGGT+AGG - chr4_4:38170303-38170322 Msa0679780:CDS 40.0%
AAAAGTCGGTACCTTTGCTT+TGG - chr4_4:38170350-38170369 Msa0679780:CDS 40.0%
ACAAAGCTGCATCTCCAATT+AGG - chr4_4:38170385-38170404 Msa0679780:CDS 40.0%
! ATTTTCATCTCCATTGCCAG+AGG - chr4_4:38170540-38170559 Msa0679780:five_prime_UTR 40.0%
CTGTGGAAACAATATTCCTC+TGG + chr4_4:38170559-38170578 None:intergenic 40.0%
GAATATTGTTTCCACAGTCG+TGG - chr4_4:38170562-38170581 Msa0679780:five_prime_UTR 40.0%
CGTTGTCATTGTTGGATACT+TGG + chr4_4:38168850-38168869 None:intergenic 40.0%
AGCTTCAAGACCATACTTCT+TGG + chr4_4:38169057-38169076 None:intergenic 40.0%
! AAGAAGTATGGTCTTGAAGC+TGG - chr4_4:38169056-38169075 Msa0679780:intron 40.0%
GGGAGCAAAATATGTGTTGT+GGG - chr4_4:38169587-38169606 Msa0679780:intron 40.0%
AAATTGGCGACACAAGTCAT+CGG + chr4_4:38169685-38169704 None:intergenic 40.0%
ACGATAGTCCGCAAAAATCA+AGG + chr4_4:38169867-38169886 None:intergenic 40.0%
!! GGACTATCGTTTTAATGGAG+AGG - chr4_4:38169877-38169896 Msa0679780:intron 40.0%
GGAGAGGATGAATAATGACA+TGG - chr4_4:38169893-38169912 Msa0679780:intron 40.0%
GGGGAACAACAGAAATCAAA+AGG - chr4_4:38170069-38170088 Msa0679780:intron 40.0%
ATCAAAAGGTGATCAAGCCA+AGG - chr4_4:38170083-38170102 Msa0679780:intron 40.0%
GAGTTGCTAGCAAAATATGG+AGG - chr4_4:38170105-38170124 Msa0679780:intron 40.0%
AGAGATCAATGACAGAGTGA+TGG + chr4_4:38170148-38170167 None:intergenic 40.0%
TGCTCATACATAACCCAATG+TGG - chr4_4:38170234-38170253 Msa0679780:intron 40.0%
ATGTCTGTATATCTGCAGGT+AGG - chr4_4:38170303-38170322 Msa0679780:CDS 40.0%
AAAAGTCGGTACCTTTGCTT+TGG - chr4_4:38170350-38170369 Msa0679780:CDS 40.0%
ACAAAGCTGCATCTCCAATT+AGG - chr4_4:38170385-38170404 Msa0679780:CDS 40.0%
! ATTTTCATCTCCATTGCCAG+AGG - chr4_4:38170540-38170559 Msa0679780:five_prime_UTR 40.0%
CTGTGGAAACAATATTCCTC+TGG + chr4_4:38170559-38170578 None:intergenic 40.0%
GAATATTGTTTCCACAGTCG+TGG - chr4_4:38170562-38170581 Msa0679780:five_prime_UTR 40.0%
!! ATGGTCTTGAAGCTGGTCTT+TGG - chr4_4:38169063-38169082 Msa0679780:intron 45.0%
!! TCTTGAAGCTGGTCTTTGGA+AGG - chr4_4:38169067-38169086 Msa0679780:intron 45.0%
TTGCCGAAATTTGCAGGGAA+AGG - chr4_4:38169340-38169359 Msa0679780:intron 45.0%
GGGGAGCAAAATATGTGTTG+TGG - chr4_4:38169586-38169605 Msa0679780:intron 45.0%
!! TTATGGGAGTGTCATCGTGT+CGG - chr4_4:38169925-38169944 Msa0679780:intron 45.0%
GATCAATGACAGAGTGATGG+AGG + chr4_4:38170145-38170164 None:intergenic 45.0%
GGAATCACTACTGATGCAAC+CGG - chr4_4:38170324-38170343 Msa0679780:CDS 45.0%
!!! AAAGGTACCGACTTTTTCGC+CGG + chr4_4:38170346-38170365 None:intergenic 45.0%
TGCTGCATATGCCAAAGCAA+AGG + chr4_4:38170364-38170383 None:intergenic 45.0%
ACTGTGGGTGGAAACCTAAT+TGG + chr4_4:38170402-38170421 None:intergenic 45.0%
ATTGGGGTAAGAGCTACTGT+GGG + chr4_4:38170417-38170436 None:intergenic 45.0%
AATCCAACCAGCTACGATTG+GGG + chr4_4:38170433-38170452 None:intergenic 45.0%
CAATCCAACCAGCTACGATT+GGG + chr4_4:38170434-38170453 None:intergenic 45.0%
GATTTACATGTCCACGACTG+TGG + chr4_4:38170576-38170595 None:intergenic 45.0%
!! ATGGTCTTGAAGCTGGTCTT+TGG - chr4_4:38169063-38169082 Msa0679780:intron 45.0%
!! TCTTGAAGCTGGTCTTTGGA+AGG - chr4_4:38169067-38169086 Msa0679780:intron 45.0%
TTGCCGAAATTTGCAGGGAA+AGG - chr4_4:38169340-38169359 Msa0679780:intron 45.0%
GGGGAGCAAAATATGTGTTG+TGG - chr4_4:38169586-38169605 Msa0679780:intron 45.0%
!! TTATGGGAGTGTCATCGTGT+CGG - chr4_4:38169925-38169944 Msa0679780:intron 45.0%
GATCAATGACAGAGTGATGG+AGG + chr4_4:38170145-38170164 None:intergenic 45.0%
GGAATCACTACTGATGCAAC+CGG - chr4_4:38170324-38170343 Msa0679780:CDS 45.0%
!!! AAAGGTACCGACTTTTTCGC+CGG + chr4_4:38170346-38170365 None:intergenic 45.0%
TGCTGCATATGCCAAAGCAA+AGG + chr4_4:38170364-38170383 None:intergenic 45.0%
ACTGTGGGTGGAAACCTAAT+TGG + chr4_4:38170402-38170421 None:intergenic 45.0%
ATTGGGGTAAGAGCTACTGT+GGG + chr4_4:38170417-38170436 None:intergenic 45.0%
AATCCAACCAGCTACGATTG+GGG + chr4_4:38170433-38170452 None:intergenic 45.0%
CAATCCAACCAGCTACGATT+GGG + chr4_4:38170434-38170453 None:intergenic 45.0%
GATTTACATGTCCACGACTG+TGG + chr4_4:38170576-38170595 None:intergenic 45.0%
! CAATGACAGAGTGATGGAGG+TGG + chr4_4:38170142-38170161 None:intergenic 50.0%
GATGCAACCGGCGAAAAAGT+CGG - chr4_4:38170336-38170355 Msa0679780:CDS 50.0%
GATTGGGGTAAGAGCTACTG+TGG + chr4_4:38170418-38170437 None:intergenic 50.0%
TTACCCCAATCGTAGCTGGT+TGG - chr4_4:38170427-38170446 Msa0679780:CDS 50.0%
CCAATCCAACCAGCTACGAT+TGG + chr4_4:38170435-38170454 None:intergenic 50.0%
CCAATCGTAGCTGGTTGGAT+TGG - chr4_4:38170432-38170451 Msa0679780:CDS 50.0%
! CAATGACAGAGTGATGGAGG+TGG + chr4_4:38170142-38170161 None:intergenic 50.0%
GATGCAACCGGCGAAAAAGT+CGG - chr4_4:38170336-38170355 Msa0679780:CDS 50.0%
GATTGGGGTAAGAGCTACTG+TGG + chr4_4:38170418-38170437 None:intergenic 50.0%
TTACCCCAATCGTAGCTGGT+TGG - chr4_4:38170427-38170446 Msa0679780:CDS 50.0%
CCAATCCAACCAGCTACGAT+TGG + chr4_4:38170435-38170454 None:intergenic 50.0%
CCAATCGTAGCTGGTTGGAT+TGG - chr4_4:38170432-38170451 Msa0679780:CDS 50.0%
GCTCTTACCCCAATCGTAGC+TGG - chr4_4:38170423-38170442 Msa0679780:CDS 55.0%
GCTCTTACCCCAATCGTAGC+TGG - chr4_4:38170423-38170442 Msa0679780:CDS 55.0%
GGGGTAAGAGCTACTGTGGG+TGG + chr4_4:38170414-38170433 None:intergenic 60.0%
GGGGTAAGAGCTACTGTGGG+TGG + chr4_4:38170414-38170433 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 38168695 38170680 38168695 ID=Msa0679780;Name=Msa0679780
chr4_4 mRNA 38168695 38170680 38168695 ID=Msa0679780-mRNA-1;Parent=Msa0679780;Name=Msa0679780-mRNA-1;_AED=0.05;_eAED=0.05;_QI=166|1|1|1|1|1|3|201|188
chr4_4 exon 38168695 38169054 38168695 ID=Msa0679780-mRNA-1:exon:8987;Parent=Msa0679780-mRNA-1
chr4_4 exon 38169148 38169327 38169148 ID=Msa0679780-mRNA-1:exon:8986;Parent=Msa0679780-mRNA-1
chr4_4 exon 38170287 38170680 38170287 ID=Msa0679780-mRNA-1:exon:8985;Parent=Msa0679780-mRNA-1
chr4_4 five_prime_UTR 38170515 38170680 38170515 ID=Msa0679780-mRNA-1:five_prime_utr;Parent=Msa0679780-mRNA-1
chr4_4 CDS 38170287 38170514 38170287 ID=Msa0679780-mRNA-1:cds;Parent=Msa0679780-mRNA-1
chr4_4 CDS 38169148 38169327 38169148 ID=Msa0679780-mRNA-1:cds;Parent=Msa0679780-mRNA-1
chr4_4 CDS 38168896 38169054 38168896 ID=Msa0679780-mRNA-1:cds;Parent=Msa0679780-mRNA-1
chr4_4 three_prime_UTR 38168695 38168895 38168695 ID=Msa0679780-mRNA-1:three_prime_utr;Parent=Msa0679780-mRNA-1
Gene Sequence

>Msa0679780

ATGACAACGTTTTTGTTGCTACCATCACCTTCTTGTACTTCTTTTCTGAGCAACAAGAAGAGTTCAAGATTTTGCAGTCTTGCTTCCATTCAGTCACGTAAATCTAATGTTAAAGTGTTGAGAGTTAGAGCTGTTAAAGAGAAAACTGAGGAAATCAAAAGCTCCTCAAAGAATTCTTCACCTGAAGAAGTAACCAAGAAGTATGGTCTTGAAGCTGGTCTTTGGAAGATTTTCAGTTCAAAGGAAGAAGGGGAACAACAGAAATCAAAAGGTGATCAAGCCAAGGAGTTGCTAGCAAAATATGGAGGAGCATACTTAGCCACCTCCATCACTCTGTCATTGATCTCTTTCGCTCTTTGTTATGTGTTAATCAATGCTGGAGTAGATGTTCAAACTTTGCTTCAGAAGGTAGGAATCACTACTGATGCAACCGGCGAAAAAGTCGGTACCTTTGCTTTGGCATATGCAGCACACAAAGCTGCATCTCCAATTAGGTTTCCACCCACAGTAGCTCTTACCCCAATCGTAGCTGGTTGGATTGGAAAGAAAGCTGATAAAGATAAGTAG

Protein sequence

>Msa0679780

MTTFLLLPSPSCTSFLSNKKSSRFCSLASIQSRKSNVKVLRVRAVKEKTEEIKSSSKNSSPEEVTKKYGLEAGLWKIFSSKEEGEQQKSKGDQAKELLAKYGGAYLATSITLSLISFALCYVLINAGVDVQTLLQKVGITTDATGEKVGTFALAYAAHKAASPIRFPPTVALTPIVAGWIGKKADKDK*