AlfalfaGEDB | Msa0224400

M. sativa cultivar zhongmu-4 / Msa0224400

KEGG: K11145
GO: -
PFAM: PF00636.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0224400	XP_013465491.1	92.188	256	15	2	1	253	1	254	2.29e-159	452

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0224400	sp\|P74327\|MRNC_SYNY3	45.872	109	54	2	119	227	29	132	1.69e-22	93.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0224400	A0A072VD47	92.188	256	15	2	1	253	1	254	1.09e-159	452

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0224400	0.832706	8.109988e-56	-8.615850e-47
Msa0001460	Msa0224400	0.801073	1.069612e-48	-8.615850e-47
Msa0004340	Msa0224400	0.829413	5.219738e-55	-8.615850e-47
Msa0004610	Msa0224400	0.822015	2.970150e-53	-8.615850e-47
Msa0005690	Msa0224400	0.855441	6.297020e-62	-8.615850e-47
Msa0006050	Msa0224400	0.831297	1.807791e-55	-8.615850e-47
Msa0006700	Msa0224400	0.812511	4.087533e-51	-8.615850e-47
Msa0008250	Msa0224400	0.816245	6.107290e-52	-8.615850e-47
Msa0008850	Msa0224400	0.824271	8.836534e-54	-8.615850e-47
Msa0012380	Msa0224400	0.842687	2.220494e-58	-8.615850e-47

Showing 1 to 10 of 703 entries

Previous1 2 3 4 5…71Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0224400	MtrunA17_Chr2g0330391	92.000	250	15	2	1	247	1	248	3.71e-159	441

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0224400	AT1G55140.1	58.590	227	82	3	22	244	10	228	3.39e-84	251
Msa0224400	AT3G13740.1	59.193	223	82	2	23	244	10	224	1.86e-82	247
Msa0224400	AT3G13740.3	59.193	223	82	2	23	244	10	224	1.72e-81	245
Msa0224400	AT3G13740.2	71.812	149	42	0	96	244	1	149	3.04e-71	216
Msa0224400	AT3G13740.6	58.639	191	70	2	23	212	10	192	1.53e-67	207
Msa0224400	AT3G13740.5	53.614	166	68	2	23	187	10	167	3.20e-52	167
Msa0224400	AT1G55140.2	55.090	167	63	3	22	184	10	168	1.31e-51	166
Msa0224400	AT3G13740.4	53.333	150	61	2	23	171	10	151	7.30e-45	148

Showing 1 to 8 of 8 entries

Previous1Next

Find 75 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAGTAGTAAAAGCTTCA+TGG	0.429937	2_1:-74291285	Msa0224400:CDS
AATATATGTGTTGTGTACAA+CGG	0.643935	2_1:-74286892	Msa0224400:three_prime_UTR
ACATGCAGCTATATGCTCGT+AGG	0.628628	2_1:-74289907	Msa0224400:intron
ACCAGAGTTGCAAACCCTGC+CGG	0.536161	2_1:+74286771	None:intergenic
ACCAGCACCTTCTACCCGTA+AGG	0.574609	2_1:-74291176	Msa0224400:CDS
ACCAGTAGTAAAAGCTTCAT+GGG	0.516338	2_1:-74291284	Msa0224400:CDS
ACGAAATTCATCATCATGCA+AGG	0.558857	2_1:-74291358	Msa0224400:exon
ACGACAGTTCAGTGAAGCTT+TGG	0.415472	2_1:-74286809	Msa0224400:three_prime_UTR
AGAACACGATGAAACCTATT+TGG	0.206219	2_1:-74291077	Msa0224400:CDS
AGAATACAATGACCGTGTGA+TGG	0.681673	2_1:-74289855	Msa0224400:CDS

Showing 1 to 10 of 75 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTTACGAATTCAAAATCTTC+TGG	+	chr2_1:74287075-74287094	None:intergenic	30.0%
GTCTTAATTTCTATGACGAT+TGG	-	chr2_1:74287238-74287257	Msa0224400:intron	30.0%
AAGGAAAACAAAGCTAAATG+TGG	-	chr2_1:74287431-74287450	Msa0224400:intron	30.0%
AGGAAAACAAAGCTAAATGT+GGG	-	chr2_1:74287432-74287451	Msa0224400:intron	30.0%
TAAATTTACATGCGGAAAGA+CGG	-	chr2_1:74288107-74288126	Msa0224400:intron	30.0%
AACTTCCTAAATCCCAATTA+GGG	+	chr2_1:74288294-74288313	None:intergenic	30.0%
TAACTTCCTAAATCCCAATT+AGG	+	chr2_1:74288295-74288314	None:intergenic	30.0%
TGCTTATTGAATTTCTCTTG+TGG	+	chr2_1:74288497-74288516	None:intergenic	30.0%
TTCTCTTCTTTGTAAACTTC+AGG	-	chr2_1:74288569-74288588	Msa0224400:intron	30.0%
ATCCTGCAAACAAACAAAAA+AGG	+	chr2_1:74288869-74288888	None:intergenic	30.0%

Showing 1 to 10 of 282 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	74286477	74291426	74286477	ID=Msa0224400;Name=Msa0224400
chr2_1	mRNA	74286477	74291426	74286477	ID=Msa0224400-mRNA-1;Parent=Msa0224400;Name=Msa0224400-mRNA-1;_AED=0.11;_eAED=0.11;_QI=61\|1\|0.85\|1\|0.66\|0.71\|7\|620\|253
chr2_1	exon	74286477	74286735	74286477	ID=Msa0224400-mRNA-1:exon:22029;Parent=Msa0224400-mRNA-1
chr2_1	exon	74286773	74287157	74286773	ID=Msa0224400-mRNA-1:exon:22028;Parent=Msa0224400-mRNA-1
chr2_1	exon	74287650	74287754	74287650	ID=Msa0224400-mRNA-1:exon:22027;Parent=Msa0224400-mRNA-1
chr2_1	exon	74288182	74288284	74288182	ID=Msa0224400-mRNA-1:exon:22026;Parent=Msa0224400-mRNA-1
chr2_1	exon	74288965	74289017	74288965	ID=Msa0224400-mRNA-1:exon:22025;Parent=Msa0224400-mRNA-1
chr2_1	exon	74289832	74289921	74289832	ID=Msa0224400-mRNA-1:exon:22024;Parent=Msa0224400-mRNA-1
chr2_1	exon	74290979	74291426	74290979	ID=Msa0224400-mRNA-1:exon:22023;Parent=Msa0224400-mRNA-1
chr2_1	five_prime_UTR	74291366	74291426	74291366	ID=Msa0224400-mRNA-1:five_prime_utr;Parent=Msa0224400-mRNA-1
chr2_1	CDS	74290979	74291365	74290979	ID=Msa0224400-mRNA-1:cds;Parent=Msa0224400-mRNA-1
chr2_1	CDS	74289832	74289921	74289832	ID=Msa0224400-mRNA-1:cds;Parent=Msa0224400-mRNA-1
chr2_1	CDS	74288965	74289017	74288965	ID=Msa0224400-mRNA-1:cds;Parent=Msa0224400-mRNA-1
chr2_1	CDS	74288182	74288284	74288182	ID=Msa0224400-mRNA-1:cds;Parent=Msa0224400-mRNA-1
chr2_1	CDS	74287650	74287754	74287650	ID=Msa0224400-mRNA-1:cds;Parent=Msa0224400-mRNA-1
chr2_1	CDS	74287134	74287157	74287134	ID=Msa0224400-mRNA-1:cds;Parent=Msa0224400-mRNA-1
chr2_1	three_prime_UTR	74286773	74287133	74286773	ID=Msa0224400-mRNA-1:three_prime_utr;Parent=Msa0224400-mRNA-1
chr2_1	three_prime_UTR	74286477	74286735	74286477	ID=Msa0224400-mRNA-1:three_prime_utr;Parent=Msa0224400-mRNA-1

Gene Sequence

>Msa0224400

ATGCAAGGTTTATCTTCTTCATTATCATGGTCAATAACCTTTTCTTCATCCAAATTGAAACCAGTAGTAAAAGCTTCATGGGACACACAACAAAGACTCCCTTATAACCGCAACGCTCCTAGAAAACTCACTCAACCACCAAAACCACAATCTCCTTCTCTCACTTCACCAGCACCTTCTACCCGTAAGGAAAATTACATTTCCGATCTTCTCAAACGCGCCACTCCACTTCCCACTATAGGCAAAATTGAAGAACAGCAACAACAAGAACACGATGAAACCTATTTGGGATATGATAGATGGCTTCCAACTCCACCTAAAGTCGTTAAACCTCGTTCTGTTTTTAATGCTGCTACCTTAGCTTATATTGGTGATTGCATTTATGAGCTATATGCTCGTAGGCATTTTTTATTTCCACCCTTGAGTATTGAAGAATACAATGACCGTGTGATGGCAGTTGTTCGCTGTGAGGCTCAAGATGCATTGCTTCAGAAACTTCTGAACAGTGATTTCTTATCAGATCAAGAGAGGGATGTTCTTCGATGGGGAAAGAACATTATTTCAAGCAAAACTAAGACAAAAAGGCGTGCTGGTGCAGCTGTGTATAACAGAGCGTCTTCATTAGAAACATTAGTTGGCTATCTCTATTTGACAAATGTGAATCGCTTGGAAAAACTAATGTTAGAATTGGGATTCTCAGTAGACTCGTCAATGCCTTTGAATTTGGAGGAATTAATAACAGATGAGCTGAACAGTGGATAA

Protein sequence

>Msa0224400

MQGLSSSLSWSITFSSSKLKPVVKASWDTQQRLPYNRNAPRKLTQPPKPQSPSLTSPAPSTRKENYISDLLKRATPLPTIGKIEEQQQQEHDETYLGYDRWLPTPPKVVKPRSVFNAATLAYIGDCIYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDALLQKLLNSDFLSDQERDVLRWGKNIISSKTKTKRRAGAAVYNRASSLETLVGYLYLTNVNRLEKLMLELGFSVDSSMPLNLEELITDELNSG*