AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1122720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122720 MtrunA17_Chr7g0260531 88.957 163 9 3 1 162 1 155 2.80e-100 289
Msa1122720 MtrunA17_Chr1g0184911 52.469 162 73 3 1 162 9 166 2.84e-54 172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122720 AT1G03055.2 40.650 123 67 2 46 162 50 172 2.22e-24 94.7
Msa1122720 AT1G03055.1 40.650 123 67 2 46 162 50 172 1.05e-23 94.4

Find 60 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATTTGCCAAATAATATT+AGG 0.158770 7_3:-73172807 None:intergenic
ATTGCTTCCCTAATATTATT+TGG 0.171331 7_3:+73172799 Msa1122720:three_prime_UTR
AGGATTTGTTGTAGGCTTTA+AGG 0.181015 7_3:+73172579 Msa1122720:three_prime_UTR
ATGTTCTTTACTTGGTTACT+TGG 0.266301 7_3:+73169613 Msa1122720:CDS
CAAAGGTTTATTTATATGAT+AGG 0.284336 7_3:+73172752 Msa1122720:three_prime_UTR
CCTTGTTGAGGCAGCTACTA+TGG 0.314275 7_3:+73169351 Msa1122720:CDS
GGATTTGTTGTAGGCTTTAA+GGG 0.320503 7_3:+73172580 Msa1122720:three_prime_UTR
ATGCAATAAGGATTGGAAAT+TGG 0.329708 7_3:+73172477 Msa1122720:three_prime_UTR
GCAACGGAATGAATTGTATA+AGG 0.336193 7_3:-73168942 None:intergenic
TCTGTAATGTCATGATTTGA+AGG 0.353713 7_3:-73169119 None:intergenic
CAGATTCTGCTCTTTCCGTT+TGG 0.357589 7_3:-73168844 None:intergenic
ATTCTTAATGAGAGAAACTA+TGG 0.357956 7_3:-73172671 None:intergenic
TATAAACATGTAATTATTAG+TGG 0.359033 7_3:-73172292 None:intergenic
GATATTGCAATCATAAATAA+AGG 0.369419 7_3:-73172518 None:intergenic
TTGACTAAAGGATTTGTTGT+AGG 0.371806 7_3:+73172571 Msa1122720:three_prime_UTR
GAATTTGCCAAATAATATTA+GGG 0.375298 7_3:-73172806 None:intergenic
AATTTCTTTAGCATGCAATA+AGG 0.375492 7_3:+73172465 Msa1122720:three_prime_UTR
GTGTTAATAAGAGGCATATA+AGG 0.387188 7_3:-73168911 None:intergenic
CTATCATATAAATAAACCTT+TGG 0.398207 7_3:-73172751 None:intergenic
CTAATGTCTACAAAGATAAC+TGG 0.401094 7_3:+73169165 Msa1122720:CDS
CTTGTAAATTTAGGTGGTAG+TGG 0.406057 7_3:-73169565 None:intergenic
TCACCACTATGTTCTTTACT+TGG 0.413302 7_3:+73169605 Msa1122720:CDS
GGGAGAAGTGGTTTGACTAA+AGG 0.415057 7_3:+73172559 Msa1122720:three_prime_UTR
CACTACCACCTAAATTTACA+AGG 0.429034 7_3:+73169566 Msa1122720:CDS
CAAACGGAAAGAGCAGAATC+TGG 0.433242 7_3:+73168845 Msa1122720:five_prime_UTR
TGCTAAGGATCACTATTCTC+TGG 0.433860 7_3:-73172437 None:intergenic
CTTTAGCATGCAATAAGGAT+TGG 0.438630 7_3:+73172470 Msa1122720:three_prime_UTR
GGCTTTAAGGGCAGCAAGGA+TGG 0.455650 7_3:+73172592 Msa1122720:three_prime_UTR
GAGTCTATCAAGAGCTTGAA+TGG 0.459713 7_3:-73169413 None:intergenic
CTCAAAACAACATTCACAAA+TGG 0.473195 7_3:+73168986 Msa1122720:exon
GAACAAGAAGTGTTAATAAG+AGG 0.477848 7_3:-73168920 None:intergenic
TGTTCTTTACTTGGTTACTT+GGG 0.479606 7_3:+73169614 Msa1122720:CDS
TGGCTGATGAGTATGAGTTT+TGG 0.479804 7_3:-73172651 None:intergenic
ACTATAGAAGTTGGATGTTG+AGG 0.505938 7_3:-73169080 None:intergenic
AGCACGGCAACTATAGAAGT+TGG 0.508359 7_3:-73169089 None:intergenic
GTTGAGGTTTATGTTTGATG+AGG 0.512812 7_3:-73169064 None:intergenic
TAATGCTATTCAACAACAAG+AGG 0.546204 7_3:+73169387 Msa1122720:CDS
CAGACTGTCTCTAGACGGTA+TGG 0.546844 7_3:+73172221 Msa1122720:CDS
CTGTCTCTAGACGGTATGGA+TGG 0.550258 7_3:+73172225 Msa1122720:CDS
GGCAAGGCATATAAAAGTCA+TGG 0.554697 7_3:+73172196 Msa1122720:intron
AATCTATTATCTAAACCAAA+CGG 0.556799 7_3:+73168829 Msa1122720:five_prime_UTR
ATTTGAAGGCTTTCTAAGCA+CGG 0.562335 7_3:-73169105 None:intergenic
AATTCCCTTGTAAATTTAGG+TGG 0.568975 7_3:-73169571 None:intergenic
TGAACCTGTGGCAGCTTGAA+CGG 0.569981 7_3:-73169222 None:intergenic
TGGCAGCATACGAAATGTGT+GGG 0.579991 7_3:-73172631 None:intergenic
AAAACCGTTCAAGCTGCCAC+AGG 0.594953 7_3:+73169218 Msa1122720:CDS
CCATAGTAGCTGCCTCAACA+AGG 0.595349 7_3:-73169351 None:intergenic
TTGGTTACTTGGGCCATCCG+AGG 0.598797 7_3:+73169624 Msa1122720:CDS
TTGGCAGCATACGAAATGTG+TGG 0.605520 7_3:-73172632 None:intergenic
TGTAGGCTTTAAGGGCAGCA+AGG 0.609155 7_3:+73172588 Msa1122720:three_prime_UTR
ACTAATGCAAATACAAACTG+TGG 0.612608 7_3:-73169439 None:intergenic
TAACCAAGTAAAGAACATAG+TGG 0.616885 7_3:-73169608 None:intergenic
TGGCTATGAGAGCCTTGTTG+AGG 0.620691 7_3:+73169339 Msa1122720:CDS
TTATTTATATGATAGGCAAG+TGG 0.638536 7_3:+73172759 Msa1122720:three_prime_UTR
GTATAAGACTAATAATCCAA+AGG 0.653527 7_3:+73172735 Msa1122720:three_prime_UTR
GGACTCAGAAACAATAAGAG+TGG 0.655708 7_3:+73169319 Msa1122720:intron
GAAATTGGTGATGACAACAT+TGG 0.656972 7_3:+73172492 Msa1122720:three_prime_UTR
TGTGACAGAGAAATATGCAA+CGG 0.659753 7_3:-73168958 None:intergenic
ACTACCACCTAAATTTACAA+GGG 0.671104 7_3:+73169567 Msa1122720:CDS
TGGAACAGACTGTCTCTAGA+CGG 0.681909 7_3:+73172216 Msa1122720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATGTTTAATGTAAA+TGG + chr7_3:73169883-73169902 Msa1122720:intron 10.0%
!!! ATTAATCTTTTTTAAATCAT+AGG - chr7_3:73170302-73170321 None:intergenic 10.0%
!! TAATGATGAAAAATAAATAA+GGG + chr7_3:73171798-73171817 Msa1122720:intron 10.0%
!! TATGAATTGAAAATATAAAT+TGG - chr7_3:73172054-73172073 None:intergenic 10.0%
!! CTTAATTCATTTATACTATA+TGG + chr7_3:73170429-73170448 Msa1122720:intron 15.0%
!!! TTCATTTGTTTATTTTTTAG+TGG - chr7_3:73171009-73171028 None:intergenic 15.0%
!! TAACTTAACAGATATTATTT+AGG - chr7_3:73171236-73171255 None:intergenic 15.0%
!!! CTTATTTATTTTTCATCATT+AGG - chr7_3:73171799-73171818 None:intergenic 15.0%
!! CTAATGATGAAAAATAAATA+AGG + chr7_3:73171797-73171816 Msa1122720:intron 15.0%
!! AAAAAAAAGAGTAATAAAGT+TGG - chr7_3:73172118-73172137 None:intergenic 15.0%
!! TATAAACATGTAATTATTAG+TGG - chr7_3:73172295-73172314 None:intergenic 15.0%
!!! TTTATATTTTCTTCTTCTTT+GGG + chr7_3:73172309-73172328 Msa1122720:three_prime_UTR 15.0%
!!! TAAAGAAATTTTTTATGCTA+AGG - chr7_3:73172455-73172474 None:intergenic 15.0%
!! AATCTATTATCTAAACCAAA+CGG + chr7_3:73168829-73168848 Msa1122720:five_prime_UTR 20.0%
!! ACAATTGAATTACAACAAAA+GGG - chr7_3:73169254-73169273 None:intergenic 20.0%
!! AACAATTGAATTACAACAAA+AGG - chr7_3:73169255-73169274 None:intergenic 20.0%
!!! GTAATTCAATTGTTATTTCA+AGG + chr7_3:73169261-73169280 Msa1122720:intron 20.0%
!! GAAATTACAATGCTTAAAAA+TGG - chr7_3:73169497-73169516 None:intergenic 20.0%
!! AAAAATTCCCTTGTAAATTT+AGG - chr7_3:73169577-73169596 None:intergenic 20.0%
!! GAAATTTACTATAAGCTTAA+TGG + chr7_3:73169768-73169787 Msa1122720:intron 20.0%
!! GATATGTTATAGATAAACTA+AGG - chr7_3:73170073-73170092 None:intergenic 20.0%
!!! ATCTTTTTTAAATCATAGGA+CGG - chr7_3:73170298-73170317 None:intergenic 20.0%
!! TGAATTATGAAGGATATATA+CGG - chr7_3:73170460-73170479 None:intergenic 20.0%
!! TCAAAAAAATTAATACATGC+AGG + chr7_3:73170789-73170808 Msa1122720:intron 20.0%
!!! GTTTAATTTTGGAATTGTTA+GGG - chr7_3:73170928-73170947 None:intergenic 20.0%
!! TTCCAAAATTAAACCTAAAT+AGG + chr7_3:73170934-73170953 Msa1122720:intron 20.0%
!!! TTCCTATTTAGGTTTAATTT+TGG - chr7_3:73170939-73170958 None:intergenic 20.0%
!! GTTAAGTTAAACTTCATATA+TGG + chr7_3:73171247-73171266 Msa1122720:intron 20.0%
!! ATATTAACTCAAGAACTATA+GGG - chr7_3:73171324-73171343 None:intergenic 20.0%
!! AATATTAACTCAAGAACTAT+AGG - chr7_3:73171325-73171344 None:intergenic 20.0%
!! GAGATTTATTTAATCATGTT+AGG - chr7_3:73171829-73171848 None:intergenic 20.0%
!! AATCTAAATGTATACTTCAA+TGG - chr7_3:73171854-73171873 None:intergenic 20.0%
!!! GTTTATATTTTCTTCTTCTT+TGG + chr7_3:73172308-73172327 Msa1122720:three_prime_UTR 20.0%
!!! TTATATTTTCTTCTTCTTTG+GGG + chr7_3:73172310-73172329 Msa1122720:three_prime_UTR 20.0%
!!! TACATTTTCTGTAGAAAATT+AGG + chr7_3:73172350-73172369 Msa1122720:three_prime_UTR 20.0%
!! GATATTGCAATCATAAATAA+AGG - chr7_3:73172521-73172540 None:intergenic 20.0%
!!! TATCAAGTAGTTTCTATTTT+TGG + chr7_3:73172537-73172556 Msa1122720:three_prime_UTR 20.0%
!!! ATCAAGTAGTTTCTATTTTT+GGG + chr7_3:73172538-73172557 Msa1122720:three_prime_UTR 20.0%
!! CTATCATATAAATAAACCTT+TGG - chr7_3:73172754-73172773 None:intergenic 20.0%
!! CAAAGGTTTATTTATATGAT+AGG + chr7_3:73172752-73172771 Msa1122720:three_prime_UTR 20.0%
!! AAATGGAAACTAATGTTTTC+AGG + chr7_3:73169003-73169022 Msa1122720:exon 25.0%
!! TTGTAGTTTTTATTCTTTGC+AGG + chr7_3:73169298-73169317 Msa1122720:intron 25.0%
! GCATAAAAACAATTTCATTG+TGG - chr7_3:73169519-73169538 None:intergenic 25.0%
!!! GTTGTTTCTTTATCTGTAAT+TGG - chr7_3:73169546-73169565 None:intergenic 25.0%
!!! TTTTTTTCAACAAGACTTAG+TGG - chr7_3:73169830-73169849 None:intergenic 25.0%
!! TCTTTAATTTAACCATGAGT+AGG + chr7_3:73170323-73170342 Msa1122720:intron 25.0%
!! AGAAGCATAATCATAGATTA+TGG - chr7_3:73170653-73170672 None:intergenic 25.0%
! GACAAAAATCATAACAAGAA+AGG - chr7_3:73170696-73170715 None:intergenic 25.0%
!!! TCTTGTTATGATTTTTGTCA+TGG + chr7_3:73170697-73170716 Msa1122720:intron 25.0%
!! AATTAATACATGCAGGTTTT+TGG + chr7_3:73170796-73170815 Msa1122720:intron 25.0%
! TTCTTTATAAACGATTGAGT+TGG - chr7_3:73170866-73170885 None:intergenic 25.0%
!!! GGTTTAATTTTGGAATTGTT+AGG - chr7_3:73170929-73170948 None:intergenic 25.0%
! CATCATGATATTTCCTATTT+AGG - chr7_3:73170950-73170969 None:intergenic 25.0%
!!! TCATCATTGATTCATTTCAA+TGG + chr7_3:73171101-73171120 Msa1122720:intron 25.0%
!!! ATATGAGAGATGTCATTTTA+TGG - chr7_3:73171172-73171191 None:intergenic 25.0%
!! ATATTATTTAGGTTCATGAG+AGG - chr7_3:73171225-73171244 None:intergenic 25.0%
!! TTTTAATCTTCCAATGTATG+AGG + chr7_3:73171292-73171311 Msa1122720:intron 25.0%
! ATATCTCTAGTTAGTCAATT+TGG + chr7_3:73171352-73171371 Msa1122720:intron 25.0%
! AACGTTGAGTATTAATTCAA+TGG - chr7_3:73171612-73171631 None:intergenic 25.0%
! TAATCACATTGTTTATAGCA+TGG - chr7_3:73171997-73172016 None:intergenic 25.0%
! TTTATGTTCATATATCATGC+AGG + chr7_3:73172175-73172194 Msa1122720:intron 25.0%
! AATTTCTTTAGCATGCAATA+AGG + chr7_3:73172465-73172484 Msa1122720:three_prime_UTR 25.0%
!!! TCAAGTAGTTTCTATTTTTG+GGG + chr7_3:73172539-73172558 Msa1122720:three_prime_UTR 25.0%
! ATTCTTAATGAGAGAAACTA+TGG - chr7_3:73172674-73172693 None:intergenic 25.0%
! GTATAAGACTAATAATCCAA+AGG + chr7_3:73172735-73172754 Msa1122720:three_prime_UTR 25.0%
! TTATTTATATGATAGGCAAG+TGG + chr7_3:73172759-73172778 Msa1122720:three_prime_UTR 25.0%
! ATTGCTTCCCTAATATTATT+TGG + chr7_3:73172799-73172818 Msa1122720:three_prime_UTR 25.0%
! GTGTTAATAAGAGGCATATA+AGG - chr7_3:73168914-73168933 None:intergenic 30.0%
!! GAACAAGAAGTGTTAATAAG+AGG - chr7_3:73168923-73168942 None:intergenic 30.0%
CTCAAAACAACATTCACAAA+TGG + chr7_3:73168986-73169005 Msa1122720:exon 30.0%
TCTGTAATGTCATGATTTGA+AGG - chr7_3:73169122-73169141 None:intergenic 30.0%
CTAATGTCTACAAAGATAAC+TGG + chr7_3:73169165-73169184 Msa1122720:CDS 30.0%
! CTTGAACGGTTTTTGATAAA+TGG - chr7_3:73169211-73169230 None:intergenic 30.0%
TAATGCTATTCAACAACAAG+AGG + chr7_3:73169387-73169406 Msa1122720:CDS 30.0%
ACTAATGCAAATACAAACTG+TGG - chr7_3:73169442-73169461 None:intergenic 30.0%
ACTACCACCTAAATTTACAA+GGG + chr7_3:73169567-73169586 Msa1122720:CDS 30.0%
AATTCCCTTGTAAATTTAGG+TGG - chr7_3:73169574-73169593 None:intergenic 30.0%
TAACCAAGTAAAGAACATAG+TGG - chr7_3:73169611-73169630 None:intergenic 30.0%
ATGTTCTTTACTTGGTTACT+TGG + chr7_3:73169613-73169632 Msa1122720:CDS 30.0%
TGTTCTTTACTTGGTTACTT+GGG + chr7_3:73169614-73169633 Msa1122720:CDS 30.0%
!! AACATCTCAGTTTTATACCT+CGG - chr7_3:73169644-73169663 None:intergenic 30.0%
!!! CTTGTATTTTGATAAACCTC+TGG - chr7_3:73169946-73169965 None:intergenic 30.0%
TGATTAAAAAGACACTTGCA+TGG + chr7_3:73169968-73169987 Msa1122720:intron 30.0%
TTGCTAATGAAACTGAAATG+TGG - chr7_3:73170152-73170171 None:intergenic 30.0%
GTAAAAGCAAATAGCATACA+TGG - chr7_3:73170272-73170291 None:intergenic 30.0%
! TAAGAGAATCTGAGATCAAT+GGG + chr7_3:73170346-73170365 Msa1122720:intron 30.0%
! GATAGAGAAGCAATGATTTT+AGG + chr7_3:73170571-73170590 Msa1122720:intron 30.0%
TATGATTATGCTTCTCCTTA+CGG + chr7_3:73170658-73170677 Msa1122720:intron 30.0%
ATCGTTTATAAAGAACACTC+TGG + chr7_3:73170871-73170890 Msa1122720:intron 30.0%
TCGTTTATAAAGAACACTCT+GGG + chr7_3:73170872-73170891 Msa1122720:intron 30.0%
!! TCATTGATTCATTTCAATGG+AGG + chr7_3:73171104-73171123 Msa1122720:intron 30.0%
AATGACATCTCTCATATCTA+TGG + chr7_3:73171175-73171194 Msa1122720:intron 30.0%
!!! AATGGTTTTGGGATAAATTC+TGG - chr7_3:73171438-73171457 None:intergenic 30.0%
ATGAGTTGTGAGATGATATT+TGG + chr7_3:73171928-73171947 Msa1122720:intron 30.0%
! CAAAACTTGAGACATGATTT+TGG + chr7_3:73172082-73172101 Msa1122720:intron 30.0%
ATGCAATAAGGATTGGAAAT+TGG + chr7_3:73172477-73172496 Msa1122720:three_prime_UTR 30.0%
!! TTGACTAAAGGATTTGTTGT+AGG + chr7_3:73172571-73172590 Msa1122720:three_prime_UTR 30.0%
GCAACGGAATGAATTGTATA+AGG - chr7_3:73168945-73168964 None:intergenic 35.0%
TGTGACAGAGAAATATGCAA+CGG - chr7_3:73168961-73168980 None:intergenic 35.0%
GTTGAGGTTTATGTTTGATG+AGG - chr7_3:73169067-73169086 None:intergenic 35.0%
ACTATAGAAGTTGGATGTTG+AGG - chr7_3:73169083-73169102 None:intergenic 35.0%
ATTTGAAGGCTTTCTAAGCA+CGG - chr7_3:73169108-73169127 None:intergenic 35.0%
CTTGTAAATTTAGGTGGTAG+TGG - chr7_3:73169568-73169587 None:intergenic 35.0%
CACTACCACCTAAATTTACA+AGG + chr7_3:73169566-73169585 Msa1122720:CDS 35.0%
TCACCACTATGTTCTTTACT+TGG + chr7_3:73169605-73169624 Msa1122720:CDS 35.0%
TTCAGTCGCATAATTAGTAG+TGG - chr7_3:73169751-73169770 None:intergenic 35.0%
ATAAGCTTAATGGTGATAGC+TGG + chr7_3:73169778-73169797 Msa1122720:intron 35.0%
TAATTGTCACACCAGTTAGT+GGG - chr7_3:73170100-73170119 None:intergenic 35.0%
AACTGAAATGTGGCATAATC+TGG - chr7_3:73170142-73170161 None:intergenic 35.0%
! GTAAGAGAATCTGAGATCAA+TGG + chr7_3:73170345-73170364 Msa1122720:intron 35.0%
CAGTCTACATCAAAAAATGC+AGG + chr7_3:73170385-73170404 Msa1122720:intron 35.0%
TATGTGACAGAATGTGTCTT+AGG - chr7_3:73170487-73170506 None:intergenic 35.0%
AGATCCTCTAAATCGTTGTA+TGG + chr7_3:73170519-73170538 Msa1122720:intron 35.0%
CTCTAAATCGTTGTATGGTT+CGG + chr7_3:73170524-73170543 Msa1122720:intron 35.0%
CGAAAGCTAATGTATCCTAT+TGG - chr7_3:73170552-73170571 None:intergenic 35.0%
ATCATAACAAGAAAGGAGAG+TGG - chr7_3:73170689-73170708 None:intergenic 35.0%
TTGACAACAAACTCTTGCTA+TGG - chr7_3:73170726-73170745 None:intergenic 35.0%
!! TAATACATGCAGGTTTTTGG+AGG + chr7_3:73170799-73170818 Msa1122720:intron 35.0%
! GAATTGTTAGGGTACTTACT+TGG - chr7_3:73170917-73170936 None:intergenic 35.0%
!! CTACACTTGAAAGAGTATCA+TGG + chr7_3:73171042-73171061 Msa1122720:intron 35.0%
TATCCCAAAACCATTTCTGT+TGG + chr7_3:73171443-73171462 Msa1122720:intron 35.0%
GTTGGATGTAAAAACACATG+AGG - chr7_3:73171510-73171529 None:intergenic 35.0%
! ATAGTTTGTGTCGCTATGTA+TGG + chr7_3:73171565-73171584 Msa1122720:intron 35.0%
CAATGGATCAAACTAACAAG+AGG - chr7_3:73171595-73171614 None:intergenic 35.0%
TGAACCTATCATAGAATGAG+TGG + chr7_3:73171736-73171755 Msa1122720:intron 35.0%
AACACCACTCATTCTATGAT+AGG - chr7_3:73171743-73171762 None:intergenic 35.0%
AAGAGTAATAAAGTTGGCGT+TGG - chr7_3:73172112-73172131 None:intergenic 35.0%
CTTTAGCATGCAATAAGGAT+TGG + chr7_3:73172470-73172489 Msa1122720:three_prime_UTR 35.0%
!! GAAATTGGTGATGACAACAT+TGG + chr7_3:73172492-73172511 Msa1122720:three_prime_UTR 35.0%
!!! TTTCTATTTTTGGGGAGAAG+TGG + chr7_3:73172547-73172566 Msa1122720:three_prime_UTR 35.0%
!! AGGATTTGTTGTAGGCTTTA+AGG + chr7_3:73172579-73172598 Msa1122720:three_prime_UTR 35.0%
!! GGATTTGTTGTAGGCTTTAA+GGG + chr7_3:73172580-73172599 Msa1122720:three_prime_UTR 35.0%
! AAAGGGTATGTATGAACCTG+TGG - chr7_3:73169237-73169256 None:intergenic 40.0%
GGACTCAGAAACAATAAGAG+TGG + chr7_3:73169319-73169338 Msa1122720:intron 40.0%
GAGTCTATCAAGAGCTTGAA+TGG - chr7_3:73169416-73169435 None:intergenic 40.0%
!! TCTCAGTTTTATACCTCGGA+TGG - chr7_3:73169640-73169659 None:intergenic 40.0%
! GTCGCATAATTAGTAGTGGA+AGG - chr7_3:73169747-73169766 None:intergenic 40.0%
!! AAGACTTAGTGGACTCGATT+TGG - chr7_3:73169819-73169838 None:intergenic 40.0%
GGCAGAGCAGAAAATATAGT+CGG + chr7_3:73169904-73169923 Msa1122720:intron 40.0%
CAGAGACATTAACAAACCAG+AGG + chr7_3:73169927-73169946 Msa1122720:intron 40.0%
!! CCACTCGTTTTCTAGTAACA+AGG - chr7_3:73170035-73170054 None:intergenic 40.0%
CCTTGTTACTAGAAAACGAG+TGG + chr7_3:73170032-73170051 Msa1122720:intron 40.0%
AATTGTCACACCAGTTAGTG+GGG - chr7_3:73170099-73170118 None:intergenic 40.0%
CTAATTGTCACACCAGTTAG+TGG - chr7_3:73170101-73170120 None:intergenic 40.0%
CAGATTCTCTTACCTACTCA+TGG - chr7_3:73170338-73170357 None:intergenic 40.0%
CTTAGGTGGGTGAATTATGA+AGG - chr7_3:73170470-73170489 None:intergenic 40.0%
TGACAGAATGTGTCTTAGGT+GGG - chr7_3:73170483-73170502 None:intergenic 40.0%
CGAACCATACAACGATTTAG+AGG - chr7_3:73170526-73170545 None:intergenic 40.0%
!! GGATTTTAGAGACCATATGC+TGG + chr7_3:73170592-73170611 Msa1122720:intron 40.0%
GAACCATACAACGACTTTAG+AGG + chr7_3:73170618-73170637 Msa1122720:intron 40.0%
!! GATCCTCTAAAGTCGTTGTA+TGG - chr7_3:73170624-73170643 None:intergenic 40.0%
! TACAACGACTTTAGAGGATC+TGG + chr7_3:73170624-73170643 Msa1122720:intron 40.0%
TTGGAGGAGACAAATTGTGT+AGG + chr7_3:73170815-73170834 Msa1122720:intron 40.0%
TGGAGGAGACAAATTGTGTA+GGG + chr7_3:73170816-73170835 Msa1122720:intron 40.0%
TTACTTGGTACCATGTTGAC+TGG - chr7_3:73170902-73170921 None:intergenic 40.0%
! CTGCCAACAGAAATGGTTTT+GGG - chr7_3:73171449-73171468 None:intergenic 40.0%
! TCTGCCAACAGAAATGGTTT+TGG - chr7_3:73171450-73171469 None:intergenic 40.0%
AGTTTACAAAGAGGAATGGG+CGG - chr7_3:73171486-73171505 None:intergenic 40.0%
GGCAGTTTACAAAGAGGAAT+GGG - chr7_3:73171489-73171508 None:intergenic 40.0%
AGGCAGTTTACAAAGAGGAA+TGG - chr7_3:73171490-73171509 None:intergenic 40.0%
ACATGAGGCAGTTTACAAAG+AGG - chr7_3:73171495-73171514 None:intergenic 40.0%
CCAACGTGTTATACTCATGT+TGG - chr7_3:73171528-73171547 None:intergenic 40.0%
CCAACATGAGTATAACACGT+TGG + chr7_3:73171525-73171544 Msa1122720:intron 40.0%
GATCATCAATTGATGCTGGA+GGG - chr7_3:73171960-73171979 None:intergenic 40.0%
GATGGATCATCAATTGATGC+TGG - chr7_3:73171964-73171983 None:intergenic 40.0%
GTTCATATATCATGCAGGCA+AGG + chr7_3:73172180-73172199 Msa1122720:intron 40.0%
GGCAAGGCATATAAAAGTCA+TGG + chr7_3:73172196-73172215 Msa1122720:intron 40.0%
TGCTAAGGATCACTATTCTC+TGG - chr7_3:73172440-73172459 None:intergenic 40.0%
! TGGCTGATGAGTATGAGTTT+TGG - chr7_3:73172654-73172673 None:intergenic 40.0%
CAGATTCTGCTCTTTCCGTT+TGG - chr7_3:73168847-73168866 None:intergenic 45.0%
CAAACGGAAAGAGCAGAATC+TGG + chr7_3:73168845-73168864 Msa1122720:five_prime_UTR 45.0%
AGCACGGCAACTATAGAAGT+TGG - chr7_3:73169092-73169111 None:intergenic 45.0%
ACACTTGCATGGAAACTGAG+TGG + chr7_3:73169979-73169998 Msa1122720:intron 45.0%
ACATATCATGCCCCACTAAC+TGG + chr7_3:73170086-73170105 Msa1122720:intron 45.0%
GTGACAGAATGTGTCTTAGG+TGG - chr7_3:73170484-73170503 None:intergenic 45.0%
GTATGGTTCAGTCCAGCATA+TGG - chr7_3:73170607-73170626 None:intergenic 45.0%
! AATGTAGTGGAGGCTTGTAG+AGG - chr7_3:73171068-73171087 None:intergenic 45.0%
TACAAGCCTCCACTACATTG+TGG + chr7_3:73171069-73171088 Msa1122720:intron 45.0%
TGACATCCACAATGTAGTGG+AGG - chr7_3:73171078-73171097 None:intergenic 45.0%
TGCTGACATCCACAATGTAG+TGG - chr7_3:73171081-73171100 None:intergenic 45.0%
ACCCCTTGAATATACCACTG+AGG + chr7_3:73171127-73171146 Msa1122720:intron 45.0%
CCCTCAGTGGTATATTCAAG+GGG - chr7_3:73171131-73171150 None:intergenic 45.0%
CCCCTTGAATATACCACTGA+GGG + chr7_3:73171128-73171147 Msa1122720:intron 45.0%
CCCCTCAGTGGTATATTCAA+GGG - chr7_3:73171132-73171151 None:intergenic 45.0%
CCCTTGAATATACCACTGAG+GGG + chr7_3:73171129-73171148 Msa1122720:intron 45.0%
CCTTGAATATACCACTGAGG+GGG + chr7_3:73171130-73171149 Msa1122720:intron 45.0%
GGATCATCAATTGATGCTGG+AGG - chr7_3:73171961-73171980 None:intergenic 45.0%
TAGCATGGTTGCTTCAGTGA+TGG - chr7_3:73171982-73172001 None:intergenic 45.0%
TGGAACAGACTGTCTCTAGA+CGG + chr7_3:73172216-73172235 Msa1122720:CDS 45.0%
GGGAGAAGTGGTTTGACTAA+AGG + chr7_3:73172559-73172578 Msa1122720:three_prime_UTR 45.0%
TGGCAGCATACGAAATGTGT+GGG - chr7_3:73172634-73172653 None:intergenic 45.0%
TTGGCAGCATACGAAATGTG+TGG - chr7_3:73172635-73172654 None:intergenic 45.0%
AAAACCGTTCAAGCTGCCAC+AGG + chr7_3:73169218-73169237 Msa1122720:CDS 50.0%
TGAACCTGTGGCAGCTTGAA+CGG - chr7_3:73169225-73169244 None:intergenic 50.0%
!! TGGCTATGAGAGCCTTGTTG+AGG + chr7_3:73169339-73169358 Msa1122720:CDS 50.0%
CCATAGTAGCTGCCTCAACA+AGG - chr7_3:73169354-73169373 None:intergenic 50.0%
CCTTGTTGAGGCAGCTACTA+TGG + chr7_3:73169351-73169370 Msa1122720:CDS 50.0%
! TTGTATGGTTCGGCGCCAAT+AGG + chr7_3:73170534-73170553 Msa1122720:intron 50.0%
TCTGGGTATGCCAGTCAACA+TGG + chr7_3:73170889-73170908 Msa1122720:intron 50.0%
CCCCCTCAGTGGTATATTCA+AGG - chr7_3:73171133-73171152 None:intergenic 50.0%
TTGCAAATTTGCCCCCTCAG+TGG - chr7_3:73171144-73171163 None:intergenic 50.0%
AGGGATCACGCCTCATACAT+TGG - chr7_3:73171305-73171324 None:intergenic 50.0%
GAGGAATGGGCGGAAAACAA+GGG - chr7_3:73171476-73171495 None:intergenic 50.0%
AGAGGAATGGGCGGAAAACA+AGG - chr7_3:73171477-73171496 None:intergenic 50.0%
CAGACTGTCTCTAGACGGTA+TGG + chr7_3:73172221-73172240 Msa1122720:CDS 50.0%
CTGTCTCTAGACGGTATGGA+TGG + chr7_3:73172225-73172244 Msa1122720:CDS 50.0%
!! TGTAGGCTTTAAGGGCAGCA+AGG + chr7_3:73172588-73172607 Msa1122720:three_prime_UTR 50.0%
TTGGTTACTTGGGCCATCCG+AGG + chr7_3:73169624-73169643 Msa1122720:CDS 55.0%
GGGTGGTCTGCCAACAGAAA+TGG - chr7_3:73171456-73171475 None:intergenic 55.0%
GAATGGGCGGAAAACAAGGG+TGG - chr7_3:73171473-73171492 None:intergenic 55.0%
!! GGCTTTAAGGGCAGCAAGGA+TGG + chr7_3:73172592-73172611 Msa1122720:three_prime_UTR 55.0%
AGGAGAGTGGCGTAGCCGTA+AGG - chr7_3:73170676-73170695 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 73168825 73172824 73168825 ID=Msa1122720;Name=Msa1122720
chr7_3 mRNA 73168825 73172824 73168825 ID=Msa1122720-mRNA-1;Parent=Msa1122720;Name=Msa1122720-mRNA-1;_AED=0.15;_eAED=0.15;_QI=180|0.66|1|1|1|1|4|562|177
chr7_3 exon 73168825 73169239 73168825 ID=Msa1122720-mRNA-1:exon:19136;Parent=Msa1122720-mRNA-1
chr7_3 exon 73169320 73169459 73169320 ID=Msa1122720-mRNA-1:exon:19137;Parent=Msa1122720-mRNA-1
chr7_3 exon 73169553 73169645 73169553 ID=Msa1122720-mRNA-1:exon:19138;Parent=Msa1122720-mRNA-1
chr7_3 exon 73172197 73172824 73172197 ID=Msa1122720-mRNA-1:exon:19139;Parent=Msa1122720-mRNA-1
chr7_3 five_prime_UTR 73168825 73169004 73168825 ID=Msa1122720-mRNA-1:five_prime_utr;Parent=Msa1122720-mRNA-1
chr7_3 CDS 73169005 73169239 73169005 ID=Msa1122720-mRNA-1:cds;Parent=Msa1122720-mRNA-1
chr7_3 CDS 73169320 73169459 73169320 ID=Msa1122720-mRNA-1:cds;Parent=Msa1122720-mRNA-1
chr7_3 CDS 73169553 73169645 73169553 ID=Msa1122720-mRNA-1:cds;Parent=Msa1122720-mRNA-1
chr7_3 CDS 73172197 73172262 73172197 ID=Msa1122720-mRNA-1:cds;Parent=Msa1122720-mRNA-1
chr7_3 three_prime_UTR 73172263 73172824 73172263 ID=Msa1122720-mRNA-1:three_prime_utr;Parent=Msa1122720-mRNA-1
Gene Sequence

>Msa1122720

ATGGAAACTAATGTTTTCAGGCAGAACAGAATTTCAACACTAACTTCAACTCACTACAACCTCATCAAACATAAACCTCAACATCCAACTTCTATAGTTGCCGTGCTTAGAAAGCCTTCAAATCATGACATTACAGAAGAAACAGCAAAAAGTACTACTACTAATGTCTACAAAGATAACTGGTTTGATCTCATAGCAATAAACCATTTATCAAAAACCGTTCAAGCTGCCACAGGACTCAGAAACAATAAGAGTGGCTATGAGAGCCTTGTTGAGGCAGCTACTATGGCAAAACAGAAGTTTAATGCTATTCAACAACAAGAGGTTACCATTCAAGCTCTTGATAGACTCTTTCCACAGTTTGTATTTGCATTAATAAAGAAACAACCACTACCACCTAAATTTACAAGGGAATTTTTTGCAATTATCACCACTATGTTCTTTACTTGGTTACTTGGGCCATCCGAGGCAAGGCATATAAAAGTCATGGAACAGACTGTCTCTAGACGGTATGGATGGAAGAAGTCATTTTAG

Protein sequence

>Msa1122720

METNVFRQNRISTLTSTHYNLIKHKPQHPTSIVAVLRKPSNHDITEETAKSTTTNVYKDNWFDLIAINHLSKTVQAATGLRNNKSGYESLVEAATMAKQKFNAIQQQEVTIQALDRLFPQFVFALIKKQPLPPKFTREFFAIITTMFFTWLLGPSEARHIKVMEQTVSRRYGWKKSF*