AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1176070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176070 MtrunA17_Chr8g0346181 98.148 108 1 1 1 107 1 108 4.05e-73 212
Msa1176070 MtrunA17_Chr7g0276101 72.477 109 24 2 1 107 1 105 2.71e-49 152
Msa1176070 MtrunA17_Chr3g0127561 62.000 100 34 2 10 105 13 112 2.08e-37 122
Msa1176070 MtrunA17_Chr7g0230411 55.882 68 29 1 26 92 74 141 5.78e-20 79.0
Msa1176070 MtrunA17_Chr4g0011821 53.333 75 34 1 27 100 79 153 1.18e-19 78.6
Msa1176070 MtrunA17_Chr4g0036611 44.737 76 39 2 19 93 17 90 1.58e-17 71.2
Msa1176070 MtrunA17_Chr2g0301531 44.156 77 41 1 10 86 59 133 1.90e-17 72.8
Msa1176070 MtrunA17_Chr5g0396091 39.759 83 47 2 12 93 14 94 3.29e-17 70.5
Msa1176070 MtrunA17_Chr4g0036461 48.529 68 32 2 27 93 25 90 9.11e-17 69.3
Msa1176070 MtrunA17_Chr4g0036271 40.000 80 45 2 15 93 11 88 1.32e-16 68.9
Msa1176070 MtrunA17_Chr4g0036201 45.588 68 34 2 27 93 26 91 2.34e-16 68.2
Msa1176070 MtrunA17_Chr4g0070071 40.260 77 44 1 27 103 69 143 2.70e-16 69.7
Msa1176070 MtrunA17_Chr4g0036491 50.000 68 31 2 27 93 25 90 3.19e-16 67.8
Msa1176070 MtrunA17_Chr4g0036181 49.231 65 30 2 27 90 83 145 3.56e-16 69.3
Msa1176070 MtrunA17_Chr1g0180711 37.895 95 52 1 1 88 6 100 4.82e-16 67.8
Msa1176070 MtrunA17_Chr4g0000251 45.455 77 37 2 27 100 70 144 4.99e-16 69.3
Msa1176070 MtrunA17_Chr4g0036531 45.588 68 34 2 27 93 25 90 6.88e-16 67.0
Msa1176070 MtrunA17_Chr1g0147571 45.588 68 35 1 26 93 103 168 7.48e-16 69.7
Msa1176070 MtrunA17_Chr4g0028491 38.095 84 52 0 5 88 16 99 1.19e-15 67.4
Msa1176070 MtrunA17_Chr4g0036861 49.206 63 29 2 27 88 57 117 1.81e-15 67.0
Msa1176070 MtrunA17_Chr4g0036561 42.500 80 41 3 18 94 9 86 2.80e-15 65.5
Msa1176070 MtrunA17_Chr3g0145411 50.000 66 31 2 26 90 33 97 3.92e-15 65.5
Msa1176070 MtrunA17_Chr3g0139171 39.024 82 48 1 26 107 68 147 5.55e-15 66.6
Msa1176070 MtrunA17_Chr4g0036221 44.118 68 34 2 27 93 26 90 5.84e-15 64.7
Msa1176070 MtrunA17_Chr3g0145371 44.118 68 36 1 27 94 45 110 7.56e-15 64.7
Msa1176070 MtrunA17_Chr7g0264551 43.548 62 35 0 27 88 52 113 8.24e-15 65.1
Msa1176070 MtrunA17_Chr4g0036801 45.588 68 34 2 27 93 26 91 8.29e-15 64.3
Msa1176070 MtrunA17_Chr4g0036891 43.902 82 36 3 18 90 10 90 9.00e-15 64.3
Msa1176070 MtrunA17_Chr1g0180721 37.895 95 49 2 4 88 6 100 9.48e-15 64.3
Msa1176070 MtrunA17_Chr4g0036831 44.118 68 35 2 27 93 26 91 9.48e-15 63.9
Msa1176070 MtrunA17_Chr2g0311341 50.000 62 29 1 27 88 58 117 1.07e-14 65.5
Msa1176070 MtrunA17_Chr3g0121801 51.667 60 26 2 27 85 25 82 1.10e-14 63.9
Msa1176070 MtrunA17_Chr1g0180691 35.052 97 54 1 1 88 6 102 1.45e-14 63.9
Msa1176070 MtrunA17_Chr8g0385011 36.585 82 41 1 27 97 3 84 1.69e-14 63.9
Msa1176070 MtrunA17_Chr8g0359011 51.667 60 26 2 27 85 3 60 2.52e-14 62.4
Msa1176070 MtrunA17_Chr4g0036821 47.619 63 30 2 27 88 26 86 2.67e-14 63.2
Msa1176070 MtrunA17_Chr4g0036791 47.619 63 30 2 27 88 27 87 3.09e-14 62.8
Msa1176070 MtrunA17_Chr4g0036191 46.032 63 29 2 27 88 26 84 3.23e-14 62.8
Msa1176070 MtrunA17_Chr1g0156341 47.826 69 34 1 27 95 37 103 3.37e-14 63.9
Msa1176070 MtrunA17_Chr1g0178451 40.506 79 43 2 20 96 40 116 3.37e-14 63.5
Msa1176070 MtrunA17_Chr4g0036841 35.106 94 58 2 1 93 9 100 3.40e-14 62.8
Msa1176070 MtrunA17_Chr4g0036811 48.333 60 28 2 27 85 26 83 5.10e-14 62.4
Msa1176070 MtrunA17_Chr4g0036541 40.000 80 43 3 18 94 9 86 5.74e-14 62.0
Msa1176070 MtrunA17_Chr3g0130911 40.000 75 39 1 27 95 9 83 5.84e-14 62.4
Msa1176070 MtrunA17_Chr4g0036241 42.647 68 36 2 27 93 26 91 8.26e-14 61.6
Msa1176070 MtrunA17_Chr4g0036331 36.585 82 49 2 13 93 9 88 9.12e-14 61.6
Msa1176070 MtrunA17_Chr4g0036431 45.588 68 34 2 27 93 25 90 9.69e-14 61.6
Msa1176070 MtrunA17_Chr7g0264571 40.625 64 38 0 25 88 33 96 1.03e-13 62.0
Msa1176070 MtrunA17_Chr4g0036751 48.333 60 28 2 27 85 20 77 1.11e-13 61.2
Msa1176070 MtrunA17_Chr8g0358991 42.029 69 37 2 27 94 25 91 1.45e-13 61.2
Msa1176070 MtrunA17_Chr4g0036681 42.105 76 41 2 19 93 17 90 1.51e-13 61.2
Msa1176070 MtrunA17_Chr2g0281291 45.070 71 36 2 19 88 18 86 1.78e-13 60.8
Msa1176070 MtrunA17_Chr3g0121741 42.029 69 37 2 27 94 25 91 2.16e-13 60.5
Msa1176070 MtrunA17_Chr3g0121721 37.975 79 46 2 8 85 6 82 2.65e-13 60.5
Msa1176070 MtrunA17_Chr7g0214201 41.250 80 42 2 25 104 65 139 2.76e-13 62.0
Msa1176070 MtrunA17_Chr3g0121701 42.254 71 38 2 19 88 17 85 2.77e-13 60.5
Msa1176070 MtrunA17_Chr4g0036631 45.588 68 34 2 27 93 20 85 2.85e-13 60.1
Msa1176070 MtrunA17_Chr3g0121731 42.254 71 38 2 19 88 17 85 2.86e-13 60.5
Msa1176070 MtrunA17_Chr4g0036161 42.424 66 36 1 27 92 36 99 3.47e-13 60.5
Msa1176070 MtrunA17_Chr1g0180701 37.634 93 45 2 2 81 4 96 3.87e-13 60.5
Msa1176070 MtrunA17_Chr4g0036581 44.118 68 35 2 27 93 25 90 3.92e-13 60.1
Msa1176070 MtrunA17_Chr7g0266571 46.429 56 30 0 38 93 59 114 4.03e-13 60.8
Msa1176070 MtrunA17_Chr8g0358981 40.845 71 39 2 19 88 17 85 4.05e-13 60.1
Msa1176070 MtrunA17_Chr8g0359001 41.892 74 38 3 10 80 6 77 4.31e-13 59.7
Msa1176070 MtrunA17_Chr5g0396071 38.158 76 44 2 19 93 13 86 4.56e-13 59.7
Msa1176070 MtrunA17_Chr4g0036641 42.647 68 36 2 27 93 21 86 5.28e-13 59.3
Msa1176070 MtrunA17_Chr3g0145401 45.588 68 34 2 19 85 37 102 5.51e-13 60.1
Msa1176070 MtrunA17_Chr3g0131991 48.387 62 30 1 27 88 53 112 5.88e-13 60.8
Msa1176070 MtrunA17_Chr3g0121781 42.029 69 37 2 27 94 25 91 8.73e-13 58.9
Msa1176070 MtrunA17_Chr4g0036521 42.029 69 38 2 26 93 31 98 9.35e-13 59.3
Msa1176070 MtrunA17_Chr8g0386111 42.029 69 38 1 17 85 35 101 9.71e-13 60.1
Msa1176070 MtrunA17_Chr4g0036501 43.077 65 34 2 27 90 21 83 1.13e-12 58.5
Msa1176070 MtrunA17_Chr4g0036391 40.580 69 38 2 26 93 19 85 1.24e-12 58.5
Msa1176070 MtrunA17_Chr4g0036711 43.478 69 36 2 27 94 15 81 1.41e-12 58.2
Msa1176070 MtrunA17_Chr4g0036571 42.029 69 37 2 27 94 60 126 1.48e-12 59.3
Msa1176070 MtrunA17_Chr4g0036601 46.032 63 31 2 27 88 21 81 1.70e-12 58.2
Msa1176070 MtrunA17_Chr4g0036141 45.588 68 35 1 27 94 37 102 1.74e-12 59.3
Msa1176070 MtrunA17_Chr3g0121761 42.647 68 36 2 27 93 25 90 1.74e-12 58.2
Msa1176070 MtrunA17_Chr4g0036551 46.667 60 29 2 27 85 20 77 1.79e-12 58.2
Msa1176070 MtrunA17_Chr8g0358971 36.709 79 47 2 8 85 6 82 1.80e-12 58.2
Msa1176070 MtrunA17_Chr4g0036671 44.615 65 33 2 27 90 21 83 1.86e-12 58.2
Msa1176070 MtrunA17_Chr7g0266581 42.857 56 32 0 38 93 59 114 2.06e-12 58.9
Msa1176070 MtrunA17_Chr4g0036651 47.619 63 30 2 27 88 25 85 2.36e-12 58.2
Msa1176070 MtrunA17_Chr3g0121711 42.029 69 37 2 27 94 25 91 2.63e-12 57.8
Msa1176070 MtrunA17_Chr4g0036231 45.000 60 30 2 27 85 34 91 2.67e-12 58.2
Msa1176070 MtrunA17_Chr2g0327281 38.824 85 50 2 3 85 21 105 2.72e-12 58.9
Msa1176070 MtrunA17_Chr4g0036401 47.619 63 30 2 27 88 25 85 3.06e-12 57.8
Msa1176070 MtrunA17_Chr3g0142421 39.394 66 38 1 27 92 42 105 3.10e-12 58.2
Msa1176070 MtrunA17_Chr4g0036761 36.145 83 50 2 13 94 9 89 3.11e-12 57.8
Msa1176070 MtrunA17_Chr1g0180741 35.135 74 48 0 15 88 20 93 3.45e-12 57.8
Msa1176070 MtrunA17_Chr3g0139711 44.118 68 35 2 19 85 18 83 3.53e-12 57.4
Msa1176070 MtrunA17_Chr4g0036691 41.176 68 37 2 27 93 20 85 3.78e-12 57.4
Msa1176070 MtrunA17_Chr4g0036701 51.111 45 20 1 27 71 32 74 4.13e-12 57.4
Msa1176070 MtrunA17_Chr3g0139731 41.333 75 41 2 19 92 56 128 4.63e-12 58.2
Msa1176070 MtrunA17_Chr3g0121811 44.444 63 32 2 19 80 18 78 4.88e-12 57.4
Msa1176070 MtrunA17_Chr4g0036471 43.077 65 34 2 27 90 21 83 5.60e-12 57.0
Msa1176070 MtrunA17_Chr1g0179511 45.763 59 28 2 27 85 19 73 5.77e-12 57.8
Msa1176070 MtrunA17_Chr4g0036211 46.667 60 29 2 27 85 164 221 6.61e-12 59.7
Msa1176070 MtrunA17_Chr4g0036211 51.852 54 23 2 27 79 26 77 1.23e-11 58.9
Msa1176070 MtrunA17_Chr8g0386121 40.299 67 38 1 28 94 47 111 6.77e-12 57.4
Msa1176070 MtrunA17_Chr4g0036421 39.130 69 39 2 26 93 19 85 7.73e-12 56.6
Msa1176070 MtrunA17_Chr4g0036441 41.538 65 35 2 27 90 20 82 8.80e-12 56.2
Msa1176070 MtrunA17_Chr8g0386131 44.068 59 31 1 27 85 49 105 1.20e-11 57.8
Msa1176070 MtrunA17_Chr3g0139701 38.272 81 45 3 13 90 67 145 1.24e-11 57.4
Msa1176070 MtrunA17_Chr8g0358871 39.130 69 40 1 27 95 35 101 1.66e-11 56.6
Msa1176070 MtrunA17_Chr4g0036621 33.333 87 53 3 11 94 1 85 1.74e-11 55.5
Msa1176070 MtrunA17_Chr7g0276091 67.647 34 11 0 55 88 28 61 1.80e-11 55.8
Msa1176070 MtrunA17_Chr6g0481791 34.783 69 42 2 27 94 34 100 1.90e-11 55.8
Msa1176070 MtrunA17_Chr4g0036661 42.188 64 34 2 26 88 19 80 2.14e-11 55.5
Msa1176070 MtrunA17_Chr8g0372061 41.176 68 38 1 25 92 83 148 2.57e-11 56.6
Msa1176070 MtrunA17_Chr4g0009931 43.836 73 37 3 27 97 26 96 3.04e-11 55.5
Msa1176070 MtrunA17_Chr1g0180751 33.784 74 49 0 15 88 20 93 3.26e-11 55.5
Msa1176070 MtrunA17_Chr4g0028481 36.250 80 49 2 9 86 20 99 3.78e-11 55.8
Msa1176070 MtrunA17_Chr5g0396081 48.333 60 26 3 25 81 16 73 5.21e-11 54.3
Msa1176070 MtrunA17_Chr1g0180731 37.097 62 39 0 27 88 26 87 5.72e-11 54.7
Msa1176070 MtrunA17_Chr1g0181011 39.437 71 41 1 27 97 89 157 7.01e-11 55.8
Msa1176070 MtrunA17_Chr8g0389151 31.915 94 52 2 13 96 16 107 7.84e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176070 AT2G46690.1 67.000 100 29 2 1 99 1 97 1.94e-40 130
Msa1176070 AT4G00880.1 69.231 91 27 1 7 97 9 98 5.31e-38 124
Msa1176070 AT3G61900.1 62.745 102 34 2 1 98 1 102 6.72e-36 119
Msa1176070 AT5G53590.1 54.167 72 30 1 27 95 46 117 1.76e-20 80.5
Msa1176070 AT3G60690.1 52.941 68 31 1 27 93 88 155 1.54e-18 76.3
Msa1176070 AT4G22620.1 55.556 63 27 1 27 88 79 141 6.22e-18 74.3
Msa1176070 AT4G12410.1 50.725 69 33 1 21 88 70 138 7.38e-18 74.3
Msa1176070 AT5G20810.1 45.679 81 41 2 27 106 79 157 2.68e-17 72.8
Msa1176070 AT4G38850.1 47.297 74 37 2 21 92 15 88 4.47e-17 70.5
Msa1176070 AT5G20810.2 48.649 74 35 2 27 99 79 150 6.14e-17 72.4
Msa1176070 AT3G43120.1 48.529 68 33 1 19 86 71 136 8.83e-17 71.6
Msa1176070 AT2G45210.1 52.239 67 31 1 27 92 79 145 9.21e-17 71.6
Msa1176070 AT3G03850.1 50.769 65 31 1 25 88 23 87 1.53e-16 68.9
Msa1176070 AT2G21210.1 47.826 69 35 1 18 85 19 87 1.90e-16 68.9
Msa1176070 AT2G24400.1 42.667 75 40 2 23 97 60 131 2.31e-16 70.9
Msa1176070 AT4G34770.1 40.000 90 53 1 5 93 13 102 6.47e-16 67.8
Msa1176070 AT2G21210.2 47.826 69 35 1 18 85 86 154 9.78e-16 68.9
Msa1176070 AT4G34780.1 42.500 80 44 2 26 103 27 106 2.24e-15 66.6
Msa1176070 AT4G31320.1 40.278 72 41 1 26 97 79 148 2.94e-15 68.2
Msa1176070 AT5G18050.1 46.154 65 33 2 25 88 22 85 3.22e-15 65.5
Msa1176070 AT4G34790.1 55.000 60 26 1 27 85 39 98 5.08e-15 65.5
Msa1176070 AT3G12830.1 42.857 70 38 1 19 88 42 109 6.65e-15 65.9
Msa1176070 AT3G03840.1 38.710 93 56 1 1 92 1 93 7.07e-15 64.7
Msa1176070 AT5G18020.1 43.662 71 38 2 25 94 22 91 9.45e-15 64.3
Msa1176070 AT5G18080.1 47.692 65 32 2 25 88 22 85 1.41e-14 63.9
Msa1176070 AT4G38825.1 43.056 72 39 2 18 88 14 84 2.10e-14 63.5
Msa1176070 AT4G34750.2 39.474 76 44 1 19 94 29 102 3.29e-14 64.7
Msa1176070 AT4G34750.1 39.474 76 44 1 19 94 29 102 3.29e-14 64.7
Msa1176070 AT1G56150.1 43.836 73 34 2 27 94 38 108 3.98e-14 63.5
Msa1176070 AT4G34800.1 49.275 69 33 2 19 85 13 81 4.75e-14 62.8
Msa1176070 AT5G18060.1 48.387 62 30 2 28 88 25 85 5.41e-14 62.4
Msa1176070 AT4G38840.1 53.333 60 26 2 27 85 33 91 6.38e-14 62.4
Msa1176070 AT5G18030.1 38.961 77 45 2 13 88 8 83 9.55e-14 61.6
Msa1176070 AT3G03820.1 48.529 68 33 2 27 92 27 94 2.30e-13 61.2
Msa1176070 AT1G16510.1 44.118 68 36 1 21 88 48 113 3.12e-13 62.0
Msa1176070 AT3G20220.1 44.444 63 34 1 26 88 46 107 3.27e-13 61.2
Msa1176070 AT2G21220.1 42.424 66 36 1 27 92 40 103 3.72e-13 60.8
Msa1176070 AT1G79130.1 43.750 64 34 1 25 88 46 107 4.94e-13 61.2
Msa1176070 AT2G21200.1 47.541 61 30 2 26 85 20 79 5.74e-13 59.7
Msa1176070 AT4G34810.1 50.000 62 28 2 27 85 48 109 5.91e-13 60.5
Msa1176070 AT5G66260.1 40.845 71 40 1 23 93 30 98 9.64e-13 59.7
Msa1176070 AT4G13790.1 42.647 68 38 1 26 92 24 91 1.05e-12 59.3
Msa1176070 AT4G34760.1 42.424 66 36 1 27 92 43 106 2.15e-12 58.9
Msa1176070 AT5G18010.1 43.077 65 35 2 25 88 22 85 2.64e-12 58.2
Msa1176070 AT2G28085.1 47.458 59 30 1 31 88 60 118 3.89e-12 58.5
Msa1176070 AT1G75580.1 41.791 67 37 1 26 92 43 107 1.27e-11 57.0
Msa1176070 AT5G10990.1 41.429 70 39 1 27 96 41 108 1.44e-11 57.8
Msa1176070 AT1G19840.1 47.458 59 29 1 27 85 41 97 2.24e-11 57.4
Msa1176070 AT5G50760.1 41.463 82 38 3 22 97 44 121 3.97e-11 57.0
Msa1176070 AT4G38860.1 41.791 67 36 2 27 92 40 104 5.79e-11 55.1
Msa1176070 AT3G03830.1 44.118 68 36 2 27 92 24 91 6.86e-11 54.7

Find 20 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAACATGTTGGTTGTTT+TGG 0.174789 8_1:-7842666 Msa1176070:CDS
TTTATCGCCATAAAACCTTT+TGG 0.276868 8_1:+7842879 None:intergenic
GAATATGGATTTGATCAAAA+AGG 0.314878 8_1:-7842762 Msa1176070:CDS
CTATGCAAATGAAGACTCTT+TGG 0.322112 8_1:+7842939 None:intergenic
AAAGAGGCTGAAGAAGAATA+TGG 0.340816 8_1:-7842777 Msa1176070:CDS
TTCAATAGTTGAATGAAAAG+AGG 0.392056 8_1:+7842798 None:intergenic
ATGGCGATAAAAGTTGGTCT+AGG 0.406481 8_1:-7842867 Msa1176070:CDS
TTTCATTCAACTATTGAAAG+AGG 0.435042 8_1:-7842793 Msa1176070:CDS
TGGCGATAAAAGTTGGTCTA+GGG 0.473696 8_1:-7842866 Msa1176070:CDS
TACTATTCCTTGTCATGTTG+AGG 0.479799 8_1:-7842733 Msa1176070:CDS
GAGTTCAAAGGTGTTCCAAA+AGG 0.492578 8_1:-7842894 Msa1176070:CDS
ACAACAAAGGTTTGTTGTGC+CGG 0.497789 8_1:-7842838 Msa1176070:CDS
TCAATAGTTGAATGAAAAGA+GGG 0.540406 8_1:+7842799 None:intergenic
GAGGAATTTAGAAACGTTCG+TGG 0.549061 8_1:-7842714 Msa1176070:CDS
CTAAATTCCTCAACATGACA+AGG 0.555962 8_1:+7842726 None:intergenic
CAACATAAGCAAGAGTTCAA+AGG 0.569608 8_1:-7842906 Msa1176070:CDS
AACATGACAAGGAATAGTAA+TGG 0.599614 8_1:+7842737 None:intergenic
GGCGATAAAAGTTGGTCTAG+GGG 0.616753 8_1:-7842865 Msa1176070:CDS
GGGTGATTGAAGTACATCAC+CGG 0.643631 8_1:+7842819 None:intergenic
GTCTAGGGGAAGAACAACAA+AGG 0.657155 8_1:-7842851 Msa1176070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TCAATAGTTGAATGAAAAGA+GGG + chr8_1:7842823-7842842 None:intergenic 25.0%
! TTCAATAGTTGAATGAAAAG+AGG + chr8_1:7842824-7842843 None:intergenic 25.0%
! TTTCATTCAACTATTGAAAG+AGG - chr8_1:7842826-7842845 Msa1176070:CDS 25.0%
! GAATATGGATTTGATCAAAA+AGG - chr8_1:7842857-7842876 Msa1176070:CDS 25.0%
! AAAAATCTTCATCAACATGT+TGG - chr8_1:7842944-7842963 Msa1176070:CDS 25.0%
! TTTATCGCCATAAAACCTTT+TGG + chr8_1:7842743-7842762 None:intergenic 30.0%
AACATGACAAGGAATAGTAA+TGG + chr8_1:7842885-7842904 None:intergenic 30.0%
CTATGCAAATGAAGACTCTT+TGG + chr8_1:7842683-7842702 None:intergenic 35.0%
CAACATAAGCAAGAGTTCAA+AGG - chr8_1:7842713-7842732 Msa1176070:CDS 35.0%
! AGGTGTTCCAAAAGGTTTTA+TGG - chr8_1:7842733-7842752 Msa1176070:CDS 35.0%
!! GGTTTTATGGCGATAAAAGT+TGG - chr8_1:7842746-7842765 Msa1176070:CDS 35.0%
AAAGAGGCTGAAGAAGAATA+TGG - chr8_1:7842842-7842861 Msa1176070:CDS 35.0%
TACTATTCCTTGTCATGTTG+AGG - chr8_1:7842886-7842905 Msa1176070:CDS 35.0%
CTAAATTCCTCAACATGACA+AGG + chr8_1:7842896-7842915 None:intergenic 35.0%
!! CATCAACATGTTGGTTGTTT+TGG - chr8_1:7842953-7842972 Msa1176070:CDS 35.0%
!! GAGTTCAAAGGTGTTCCAAA+AGG - chr8_1:7842725-7842744 Msa1176070:CDS 40.0%
! ATGGCGATAAAAGTTGGTCT+AGG - chr8_1:7842752-7842771 Msa1176070:CDS 40.0%
! TGGCGATAAAAGTTGGTCTA+GGG - chr8_1:7842753-7842772 Msa1176070:CDS 40.0%
!! ACAACAAAGGTTTGTTGTGC+CGG - chr8_1:7842781-7842800 Msa1176070:CDS 40.0%
GAGGAATTTAGAAACGTTCG+TGG - chr8_1:7842905-7842924 Msa1176070:CDS 40.0%
! GGCGATAAAAGTTGGTCTAG+GGG - chr8_1:7842754-7842773 Msa1176070:CDS 45.0%
GTCTAGGGGAAGAACAACAA+AGG - chr8_1:7842768-7842787 Msa1176070:CDS 45.0%
GGGTGATTGAAGTACATCAC+CGG + chr8_1:7842803-7842822 None:intergenic 45.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 7842659 7842982 7842659 ID=Msa1176070;Name=Msa1176070
chr8_1 mRNA 7842659 7842982 7842659 ID=Msa1176070-mRNA-1;Parent=Msa1176070;Name=Msa1176070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|107
chr8_1 exon 7842659 7842982 7842659 ID=Msa1176070-mRNA-1:exon:2784;Parent=Msa1176070-mRNA-1
chr8_1 CDS 7842659 7842982 7842659 ID=Msa1176070-mRNA-1:cds;Parent=Msa1176070-mRNA-1
Gene Sequence

>Msa1176070

ATGGGTTTGGTTGAAAAGAGTCCAAAGAGTCTTCATTTGCATAGACATCATCTTCAACATAAGCAAGAGTTCAAAGGTGTTCCAAAAGGTTTTATGGCGATAAAAGTTGGTCTAGGGGAAGAACAACAAAGGTTTGTTGTGCCGGTGATGTACTTCAATCACCCTCTTTTCATTCAACTATTGAAAGAGGCTGAAGAAGAATATGGATTTGATCAAAAAGGAACCATTACTATTCCTTGTCATGTTGAGGAATTTAGAAACGTTCGTGGTTTGATTGATAGAGACAAAAATCTTCATCAACATGTTGGTTGTTTTGGTTTGTGA
Protein sequence

>Msa1176070

MGLVEKSPKSLHLHRHHLQHKQEFKGVPKGFMAIKVGLGEEQQRFVVPVMYFNHPLFIQLLKEAEEEYGFDQKGTITIPCHVEEFRNVRGLIDRDKNLHQHVGCFGL*