AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1012920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012920 MtrunA17_Chr7g0224571 99.548 442 2 0 1 442 1 442 0.0 909
Msa1012920 MtrunA17_Chr5g0420221 59.955 442 170 4 1 442 17 451 0.0 543
Msa1012920 MtrunA17_Chr7g0222461 56.027 448 185 5 1 442 10 451 1.17e-171 489
Msa1012920 MtrunA17_Chr5g0398581 50.223 448 201 5 3 442 8 441 4.26e-150 434
Msa1012920 MtrunA17_Chr4g0056741 49.777 448 203 5 3 442 8 441 3.22e-148 429
Msa1012920 MtrunA17_Chr1g0159541 48.539 445 218 6 1 435 9 452 2.17e-142 414
Msa1012920 MtrunA17_Chr3g0125661 48.984 443 213 7 1 435 9 446 5.47e-141 410
Msa1012920 MtrunA17_Chr5g0400941 43.095 420 219 5 1 400 9 428 1.91e-116 349
Msa1012920 MtrunA17_Chr4g0054261 37.924 472 261 6 1 440 28 499 1.98e-100 308
Msa1012920 MtrunA17_Chr1g0210741 27.363 201 113 6 15 189 74 267 3.02e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012920 AT3G01990.7 68.650 437 123 6 2 430 17 447 0.0 592
Msa1012920 AT3G01990.5 68.650 437 123 6 2 430 17 447 0.0 592
Msa1012920 AT3G01990.10 68.650 437 123 6 2 430 3 433 0.0 590
Msa1012920 AT3G01990.1 68.650 437 123 6 2 430 3 433 0.0 590
Msa1012920 AT3G01990.6 73.048 397 100 4 2 397 17 407 0.0 583
Msa1012920 AT3G01990.11 73.048 397 100 4 2 397 3 393 0.0 582
Msa1012920 AT1G69040.2 62.192 447 162 4 1 442 11 455 0.0 570
Msa1012920 AT1G69040.1 62.192 447 162 4 1 442 7 451 0.0 570
Msa1012920 AT2G03730.2 58.889 450 171 6 1 440 11 456 0.0 518
Msa1012920 AT2G03730.1 58.889 450 171 6 1 440 11 456 0.0 518
Msa1012920 AT3G01990.2 71.429 329 87 4 2 329 17 339 3.62e-167 473
Msa1012920 AT3G01990.4 70.359 334 92 4 2 334 17 344 8.67e-167 473
Msa1012920 AT3G01990.9 70.359 334 92 4 2 334 3 330 1.15e-166 472
Msa1012920 AT1G76990.4 50.913 438 201 6 1 427 9 443 1.93e-147 427
Msa1012920 AT1G76990.5 50.913 438 201 6 1 427 9 443 1.93e-147 427
Msa1012920 AT1G76990.2 50.913 438 201 6 1 427 9 443 1.93e-147 427
Msa1012920 AT1G76990.3 50.913 438 201 6 1 427 9 443 1.93e-147 427
Msa1012920 AT1G76990.1 50.913 438 201 6 1 427 9 443 1.93e-147 427
Msa1012920 AT1G12420.1 50.112 447 203 5 3 442 8 441 3.70e-144 419
Msa1012920 AT3G01990.3 69.388 294 83 4 2 294 17 304 8.62e-142 408
Msa1012920 AT3G01990.8 69.388 294 83 4 2 294 3 290 1.91e-141 407
Msa1012920 AT4G22780.1 49.015 457 199 7 3 441 8 448 5.13e-140 409
Msa1012920 AT4G22780.2 49.015 457 199 7 3 441 8 448 5.13e-140 409
Msa1012920 AT5G25320.1 43.333 450 201 8 1 405 9 449 4.29e-128 380
Msa1012920 AT5G25320.3 43.675 419 184 6 30 405 1 410 3.56e-123 366
Msa1012920 AT5G65890.1 41.913 439 221 6 1 412 10 441 9.34e-115 345
Msa1012920 AT5G65890.3 41.913 439 221 6 1 412 10 441 9.34e-115 345
Msa1012920 AT1G12420.2 47.906 382 179 5 68 442 1 369 8.19e-110 328
Msa1012920 AT5G25320.2 43.370 362 153 6 14 332 24 376 1.28e-99 303
Msa1012920 AT5G65890.4 40.657 396 201 6 44 412 1 389 7.27e-97 297
Msa1012920 AT5G65890.2 40.657 396 201 6 44 412 1 389 7.27e-97 297
Msa1012920 AT5G65890.5 40.575 313 169 4 115 412 17 327 1.76e-75 240
Msa1012920 AT5G04740.1 27.429 175 101 4 15 163 95 269 2.45e-12 67.8

Find 145 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCCAAACTGTTGTATT+TGG 0.137059 7_1:+18710828 Msa1012920:three_prime_UTR
CTCTGATGGAGTTTGGTTTA+TGG 0.140421 7_1:+18707186 Msa1012920:CDS
CTTTGGTAAATAATAGAATT+TGG 0.154573 7_1:-18710855 None:intergenic
TCTTTCAGCCTCTGAGCTTA+TGG 0.227474 7_1:-18709283 None:intergenic
AAACATTATTATTGATGTTT+TGG 0.250496 7_1:+18710775 Msa1012920:three_prime_UTR
TATGAACCTTGTGATTAAAA+AGG 0.256217 7_1:+18707153 Msa1012920:CDS
TTCACTCAATATTGTTGCTT+TGG 0.283383 7_1:+18710627 Msa1012920:three_prime_UTR
TACATATACATAAGTAAATA+TGG 0.283989 7_1:+18705971 Msa1012920:exon
ATATGCAGAGGCAAGAAATT+TGG 0.288218 7_1:-18705903 None:intergenic
ATGAATATGCGAAGCTTATA+AGG 0.296452 7_1:+18705997 Msa1012920:CDS
CGTCCCGCCTCTCCACAATA+AGG 0.298680 7_1:+18708398 Msa1012920:CDS
CTTTCAGCCTCTGAGCTTAT+GGG 0.300453 7_1:-18709282 None:intergenic
CCAAGAGTAAATAGTACTTT+TGG 0.304611 7_1:+18710483 Msa1012920:three_prime_UTR
AGAAAGGACAGGGGCTTATC+AGG 0.309556 7_1:+18708738 Msa1012920:CDS
TCAATAATCTTCGGATCAAC+TGG 0.310582 7_1:-18709993 None:intergenic
ACAACAATTGGATTTCTCTT+TGG 0.313884 7_1:+18710095 Msa1012920:CDS
CACACTGTTATTGAACTTAC+TGG 0.317762 7_1:+18708223 Msa1012920:CDS
TGAAAACGCCACTGTTATTC+AGG 0.320918 7_1:+18706836 Msa1012920:CDS
ATATTTCCTCTGATGGAGTT+TGG 0.326275 7_1:+18707179 Msa1012920:CDS
CATTTAGTTGTGTTTGTATA+TGG 0.327125 7_1:+18710433 Msa1012920:three_prime_UTR
GAAATCCAAATACAACAGTT+TGG 0.337638 7_1:-18710833 None:intergenic
CTCATTGACGTTTCAAAGCT+CGG 0.341739 7_1:-18708169 None:intergenic
CTTTCTCTTTCCTTAGTTGT+GGG 0.347061 7_1:+18705846 Msa1012920:five_prime_UTR
ATCAGATTATGTTTGCTGAT+AGG 0.355750 7_1:+18708518 Msa1012920:CDS
ACATCCTGGAGTTACGTATA+GGG 0.365344 7_1:+18708483 Msa1012920:CDS
GTTGTTCCTTGAGGTGGTTT+TGG 0.365505 7_1:-18710077 None:intergenic
ATTTGCTTTGCAACGTCCTC+AGG 0.366403 7_1:+18708422 Msa1012920:CDS
GGACTTAGAGAAAGAGATAA+AGG 0.373479 7_1:+18708565 Msa1012920:CDS
TCAGATTATGTTTGCTGATA+GGG 0.377860 7_1:+18708519 Msa1012920:CDS
CCCCTTGTTTCAACCAACCT+TGG 0.382653 7_1:-18710662 None:intergenic
CCACCTCAAGGAACAACAAT+TGG 0.386888 7_1:+18710083 Msa1012920:CDS
CACATCCTGGAGTTACGTAT+AGG 0.390969 7_1:+18708482 Msa1012920:CDS
CCAAAAGTACTATTTACTCT+TGG 0.394237 7_1:-18710483 None:intergenic
TCCCCTTAGCAAGAGGGGCT+TGG 0.398430 7_1:+18710273 Msa1012920:three_prime_UTR
GCAGAAATATCAACAGAAAA+CGG 0.401763 7_1:+18709927 Msa1012920:CDS
GAGGCGGGACGGATCTTCTA+TGG 0.405276 7_1:-18708386 None:intergenic
TCTTTCTCTTTCCTTAGTTG+TGG 0.418607 7_1:+18705845 Msa1012920:five_prime_UTR
ACGTGGTTACCGCTGAGATT+TGG 0.422704 7_1:+18708305 Msa1012920:CDS
CGTCAATGAGAGAGTCTGTT+GGG 0.427819 7_1:+18708182 Msa1012920:CDS
ATCTTCTATGGCACAACCAC+TGG 0.440100 7_1:-18708374 None:intergenic
ATACACAGGAGAGGACGTTT+AGG 0.442615 7_1:-18710171 None:intergenic
GAGACAGTTACATGCGGAAA+TGG 0.443364 7_1:-18708589 None:intergenic
AAGGCTTATATTTCCTCTGA+TGG 0.443541 7_1:+18707172 Msa1012920:CDS
AGGGGAAATAATTATTGAAT+CGG 0.445029 7_1:+18710680 Msa1012920:three_prime_UTR
GTCCCGCCTCTCCACAATAA+GGG 0.458534 7_1:+18708399 Msa1012920:CDS
CGGATTGAATCAATAATCTT+CGG 0.460770 7_1:-18710002 None:intergenic
CAGAAATATCAACAGAAAAC+GGG 0.461742 7_1:+18709928 Msa1012920:CDS
AAGAAATTCTCCCACAACTA+AGG 0.463575 7_1:-18705856 None:intergenic
GAAATTTATTAGACCAAGGT+TGG 0.468732 7_1:+18710649 Msa1012920:three_prime_UTR
TAATTATTGAATCGGAATTG+AGG 0.470913 7_1:+18710688 Msa1012920:three_prime_UTR
CTTACACTAGACTAAATCAT+AGG 0.474779 7_1:-18710328 None:intergenic
ATCCCTTATTGTGGAGAGGC+GGG 0.479361 7_1:-18708401 None:intergenic
CCAATTGTTGTTCCTTGAGG+TGG 0.481529 7_1:-18710083 None:intergenic
TTTAATGTGACGGATCGAAA+TGG 0.483271 7_1:+18707334 Msa1012920:CDS
ATTGAGTGAAATAGAGAGAG+AGG 0.485895 7_1:-18710614 None:intergenic
AAACAAACATGGGATACTCT+TGG 0.486685 7_1:+18707108 Msa1012920:CDS
TGTACAGTAACATATTACTT+AGG 0.491071 7_1:+18710357 Msa1012920:three_prime_UTR
GGTTCATATCTGAAATAACT+TGG 0.492510 7_1:-18707138 None:intergenic
CCGTGTCGCCGATCTGTCTA+CGG 0.499307 7_1:-18710022 None:intergenic
TTACATAATCATATCAATAG+AGG 0.500413 7_1:+18710751 Msa1012920:three_prime_UTR
ATTCCAAGCCCCTCTTGCTA+AGG 0.501817 7_1:-18710276 None:intergenic
TGTCTCAGACTGTACTGAAA+GGG 0.510423 7_1:+18708606 Msa1012920:CDS
AGAATAAATATTACCTAGGT+GGG 0.511593 7_1:-18706028 None:intergenic
GGACTATGAAAGAGTTGAAA+GGG 0.513096 7_1:+18708540 Msa1012920:CDS
TTCCAAGCCCCTCTTGCTAA+GGG 0.516773 7_1:-18710275 None:intergenic
AGCACAGATTCACATTTACA+TGG 0.519324 7_1:-18710523 None:intergenic
TGAAGCGGCAATTGAGAGGC+GGG 0.524380 7_1:+18709326 Msa1012920:CDS
CTTACTGGCACAGACAGGCC+TGG 0.525209 7_1:+18708238 Msa1012920:CDS
CGGTAACCACGTTGCAGCGA+AGG 0.527207 7_1:-18708294 None:intergenic
GATTCAATCCGTAGACAGAT+CGG 0.527568 7_1:+18710014 Msa1012920:CDS
TTATATGCAGGGGATGGAGC+TGG 0.527638 7_1:+18709824 Msa1012920:intron
CAGATTTCAGATAGTAAACC+AGG 0.531208 7_1:-18708256 None:intergenic
AAAACTGCACTTTCACATCC+TGG 0.532657 7_1:+18708469 Msa1012920:CDS
TTAAACTAGGATCTAATTGG+CGG 0.532840 7_1:-18705759 None:intergenic
ACAATATCAAACAACAGCTT+CGG 0.533003 7_1:-18708664 None:intergenic
GAGGAATATTGCTCGAGTGC+GGG 0.533688 7_1:+18710707 Msa1012920:three_prime_UTR
AACTAGGATCTAATTGGCGG+TGG 0.538714 7_1:-18705756 None:intergenic
TTTCCTCCCCTTAGCAAGAG+GGG 0.539004 7_1:+18710268 Msa1012920:three_prime_UTR
ATGGTGTGGTTCAGACAGAA+AGG 0.542138 7_1:+18708722 Msa1012920:CDS
GGCACAACCACTGGAATCAT+CGG 0.542861 7_1:-18708365 None:intergenic
TGGAATTTATACTGCACAGT+AGG 0.552517 7_1:+18710293 Msa1012920:three_prime_UTR
GTGGTTCAGACAGAAAGGAC+AGG 0.555199 7_1:+18708727 Msa1012920:CDS
TGCAGAGGCAAGAAATTTGG+AGG 0.556549 7_1:-18705900 None:intergenic
AATCCAATTGTTGTTCCTTG+AGG 0.560279 7_1:-18710086 None:intergenic
GATCGGCGACACGGTACTGC+AGG 0.560359 7_1:+18710031 Msa1012920:CDS
AAGAATAAATATTACCTAGG+TGG 0.560958 7_1:-18706029 None:intergenic
GACCAAGGTTGGTTGAAACA+AGG 0.561224 7_1:+18710660 Msa1012920:three_prime_UTR
TGCTTTGCAACGTCCTCAGG+GGG 0.561556 7_1:+18708425 Msa1012920:CDS
TTTGCTTTGCAACGTCCTCA+GGG 0.563312 7_1:+18708423 Msa1012920:CDS
TTGAACTTACTGGCACAGAC+AGG 0.567860 7_1:+18708233 Msa1012920:CDS
ACCAAGGTTGGTTGAAACAA+GGG 0.569524 7_1:+18710661 Msa1012920:three_prime_UTR
CTGTCTCAGACTGTACTGAA+AGG 0.574748 7_1:+18708605 Msa1012920:CDS
ATAACAGTGTGTTCTTCAGT+AGG 0.575373 7_1:-18708211 None:intergenic
CTATCCCTATACGTAACTCC+AGG 0.576701 7_1:-18708487 None:intergenic
AGTCATTGATTATATTCAGA+GGG 0.577703 7_1:+18707378 Msa1012920:CDS
AATTGAGAGGCGGGCATCTG+AGG 0.581375 7_1:+18709335 Msa1012920:CDS
AGACCGTGTAGGACTACTCT+CGG 0.582609 7_1:+18709860 Msa1012920:CDS
GATGGAGTTTGGTTTATGGA+TGG 0.582629 7_1:+18707190 Msa1012920:CDS
GGGACTATGAAAGAGTTGAA+AGG 0.583175 7_1:+18708539 Msa1012920:CDS
CCGTAGACAGATCGGCGACA+CGG 0.589318 7_1:+18710022 Msa1012920:CDS
GTCTTGAAGCGGCAATTGAG+AGG 0.589946 7_1:+18709322 Msa1012920:CDS
GCAAAGCAAATCCCTTATTG+TGG 0.590680 7_1:-18708410 None:intergenic
TATGAAAGAGTTGAAAGGGC+AGG 0.592168 7_1:+18708544 Msa1012920:CDS
CTTATTGTGGAGAGGCGGGA+CGG 0.600464 7_1:-18708397 None:intergenic
CAATAATCTTCGGATCAACT+GGG 0.600617 7_1:-18709992 None:intergenic
TTTGGAAATTTATTAGACCA+AGG 0.602312 7_1:+18710645 Msa1012920:three_prime_UTR
TGAGGAATATTGCTCGAGTG+CGG 0.602595 7_1:+18710706 Msa1012920:three_prime_UTR
CATATTACTTAGGTTGAGTG+TGG 0.608570 7_1:+18710367 Msa1012920:three_prime_UTR
GTTGACAGTGTAAACAAACA+TGG 0.609033 7_1:+18707097 Msa1012920:CDS
AAGTCATTGATTATATTCAG+AGG 0.614562 7_1:+18707377 Msa1012920:CDS
TTGAAGCGGCAATTGAGAGG+CGG 0.615320 7_1:+18709325 Msa1012920:CDS
AATCCCTTATTGTGGAGAGG+CGG 0.617749 7_1:-18708402 None:intergenic
ATCATCGGTTACATGAACTA+CGG 0.623701 7_1:-18708350 None:intergenic
TGGTTCAGACAGAAAGGACA+GGG 0.627734 7_1:+18708728 Msa1012920:CDS
ACTTATACAGTGTCTTGAAG+CGG 0.628410 7_1:+18709311 Msa1012920:CDS
CATAAACCAAACTCCATCAG+AGG 0.629050 7_1:-18707185 None:intergenic
AAGCCCCTCTTGCTAAGGGG+AGG 0.630008 7_1:-18710271 None:intergenic
CCAAGGTTGGTTGAAACAAG+GGG 0.635115 7_1:+18710662 Msa1012920:three_prime_UTR
ACGTCAATGAGAGAGTCTGT+TGG 0.641528 7_1:+18708181 Msa1012920:CDS
TAAGGAGGATGAACCCACCT+AGG 0.644112 7_1:+18706015 Msa1012920:CDS
GCAAATCCCTTATTGTGGAG+AGG 0.645179 7_1:-18708405 None:intergenic
TTGCTTTGCAACGTCCTCAG+GGG 0.645987 7_1:+18708424 Msa1012920:CDS
TTGACAGTGTAAACAAACAT+GGG 0.646763 7_1:+18707098 Msa1012920:CDS
AACTGGGTTACCAGTTACAT+CGG 0.647131 7_1:-18709976 None:intergenic
CGCAGACCTTCGCTGCAACG+TGG 0.648588 7_1:+18708288 Msa1012920:CDS
TGAAGAAATGAAATATGCAG+AGG 0.650475 7_1:-18705915 None:intergenic
CTTTCACCAAAACCACCTCA+AGG 0.651932 7_1:+18710071 Msa1012920:CDS
GACTACTCTCGGATATCACA+AGG 0.653562 7_1:+18709871 Msa1012920:CDS
GAAATAGCGAGAATATACAC+AGG 0.655979 7_1:-18710185 None:intergenic
TCCAAGCCCCTCTTGCTAAG+GGG 0.658022 7_1:-18710274 None:intergenic
CATGTAACCGATGATTCCAG+TGG 0.665641 7_1:+18708358 Msa1012920:CDS
AGCGAGAATATACACAGGAG+AGG 0.668278 7_1:-18710180 None:intergenic
TGATACATAAACTGTTCTCG+CGG 0.671290 7_1:-18709899 None:intergenic
GCAGAGGCAAGAAATTTGGA+GGG 0.679928 7_1:-18705899 None:intergenic
TGGCTTTCCCATAAGCTCAG+AGG 0.681534 7_1:+18709275 Msa1012920:CDS
GTCAATGAGAGAGTCTGTTG+GGG 0.683733 7_1:+18708183 Msa1012920:CDS
AATATGCGAAGCTTATAAGG+AGG 0.687339 7_1:+18706000 Msa1012920:CDS
AATATCAACAGAAAACGGGA+AGG 0.687354 7_1:+18709932 Msa1012920:CDS
TACTGAAAGGGATTATACTG+TGG 0.689453 7_1:+18708618 Msa1012920:CDS
TTGTGCACAGAAGACCGTGT+AGG 0.706816 7_1:+18709849 Msa1012920:CDS
TATCCGAGAGTAGTCCTACA+CGG 0.721848 7_1:-18709863 None:intergenic
AAGCCATACCTGAATAACAG+TGG 0.722877 7_1:-18706844 None:intergenic
CAGTCTGAGACAGTTACATG+CGG 0.730560 7_1:-18708595 None:intergenic
ATTATGCGTCCAAATCTCAG+CGG 0.777134 7_1:-18708314 None:intergenic
GGTTCAGACAGAAAGGACAG+GGG 0.787336 7_1:+18708729 Msa1012920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGATAATTAAAATTTGA+GGG - chr7_1:18706127-18706146 None:intergenic 10.0%
!!! ACATATTTATATATTTTTGT+TGG - chr7_1:18706744-18706763 None:intergenic 10.0%
!! ATCTTATTGAATATATAAAA+GGG - chr7_1:18707063-18707082 None:intergenic 10.0%
!! AATCTTATTGAATATATAAA+AGG - chr7_1:18707064-18707083 None:intergenic 10.0%
!! AAATTATAATTGATCAATAA+TGG - chr7_1:18707697-18707716 None:intergenic 10.0%
!!! ATGTTTTTAAAAATATTGTT+TGG + chr7_1:18709722-18709741 Msa1012920:intron 10.0%
!! TACATATACATAAGTAAATA+TGG + chr7_1:18705971-18705990 Msa1012920:exon 15.0%
!! TATATTATTATTGTTATGGT+TGG + chr7_1:18706098-18706117 Msa1012920:intron 15.0%
!! GATAAGATAATTAAAATTTG+AGG - chr7_1:18706128-18706147 None:intergenic 15.0%
!! ATATATAAATATGTTTGTGT+TGG + chr7_1:18706750-18706769 Msa1012920:intron 15.0%
!! AAAAAAAAAACTATGCTTAA+CGG - chr7_1:18709413-18709432 None:intergenic 15.0%
!!! TAGTTTTTTTTTTCTTCTTT+TGG + chr7_1:18709420-18709439 Msa1012920:intron 15.0%
!! GTGAATAAAAATTAGTTATA+AGG - chr7_1:18709675-18709694 None:intergenic 15.0%
!!! AAACATTATTATTGATGTTT+TGG + chr7_1:18710775-18710794 Msa1012920:three_prime_UTR 15.0%
!! ATGAAGAATAAATATTACCT+AGG - chr7_1:18706035-18706054 None:intergenic 20.0%
!!! ATTTTGTGAAAATATACAGA+GGG - chr7_1:18706879-18706898 None:intergenic 20.0%
!!! AATTTTGTGAAAATATACAG+AGG - chr7_1:18706880-18706899 None:intergenic 20.0%
!! ACAAAAATCCAATTAATACT+TGG - chr7_1:18707302-18707321 None:intergenic 20.0%
!!! TTTGAAATTGGTTTTGATTT+TGG + chr7_1:18707546-18707565 Msa1012920:intron 20.0%
!!! TATTTTTTCTCTCAAAATGT+TGG + chr7_1:18707926-18707945 Msa1012920:intron 20.0%
!!! AGTTTTCTATTACTAATATG+TGG + chr7_1:18708063-18708082 Msa1012920:intron 20.0%
!! TCTTGACAATCTATAATTAA+GGG - chr7_1:18708090-18708109 None:intergenic 20.0%
!! TTCTTGACAATCTATAATTA+AGG - chr7_1:18708091-18708110 None:intergenic 20.0%
!! TACTTATATATATAGTTGTG+AGG - chr7_1:18709083-18709102 None:intergenic 20.0%
!! AATGAAACTTAACAGTATAT+AGG - chr7_1:18709136-18709155 None:intergenic 20.0%
!! ATATACTGTTAAGTTTCATT+CGG + chr7_1:18709136-18709155 Msa1012920:intron 20.0%
!! TTATACAACAAATGCAAATT+AGG - chr7_1:18709196-18709215 None:intergenic 20.0%
!!! TTGTTTAGGAGTTTTATATT+CGG + chr7_1:18709244-18709263 Msa1012920:intron 20.0%
!!! TCTTTTCTTTAAAAGAAGTT+AGG - chr7_1:18709748-18709767 None:intergenic 20.0%
!!! ACTAAATCATAGGTATTTTA+AGG - chr7_1:18710321-18710340 None:intergenic 20.0%
!!! TTTTTTGGATTTGATAATCT+AGG - chr7_1:18710403-18710422 None:intergenic 20.0%
!! TAGATTATCAAATCCAAAAA+AGG + chr7_1:18710402-18710421 Msa1012920:three_prime_UTR 20.0%
!!! AAATGAACTATTTCCTTTTT+TGG - chr7_1:18710418-18710437 None:intergenic 20.0%
!! TTACATAATCATATCAATAG+AGG + chr7_1:18710751-18710770 Msa1012920:three_prime_UTR 20.0%
!! CTTTTAAACTAGGATCTAAT+TGG - chr7_1:18705765-18705784 None:intergenic 25.0%
!! GTGTTTTCAACTTTTAAACT+AGG - chr7_1:18705775-18705794 None:intergenic 25.0%
! AGAAGAATAAAAAGTGAAGT+AGG - chr7_1:18705822-18705841 None:intergenic 25.0%
! AGAATAAATATTACCTAGGT+GGG - chr7_1:18706031-18706050 None:intergenic 25.0%
! AAGAATAAATATTACCTAGG+TGG - chr7_1:18706032-18706051 None:intergenic 25.0%
!! TTAATGAACTCGAATTGTTT+TGG + chr7_1:18706489-18706508 Msa1012920:intron 25.0%
! GAAATGAACTTGAATCAATT+AGG + chr7_1:18706618-18706637 Msa1012920:intron 25.0%
!!! TTTCTTCTTCTTTTTTTGAC+TGG - chr7_1:18706929-18706948 None:intergenic 25.0%
! TTGAGTTCTCAAATTATTAG+CGG + chr7_1:18706972-18706991 Msa1012920:intron 25.0%
!!! AATAAGATTGTTTGTTTTGC+AGG + chr7_1:18707075-18707094 Msa1012920:intron 25.0%
! TATGAACCTTGTGATTAAAA+AGG + chr7_1:18707153-18707172 Msa1012920:CDS 25.0%
!! TATAAGCCTTTTTAATCACA+AGG - chr7_1:18707162-18707181 None:intergenic 25.0%
!! TAATTTCCTCTCTTAACTTT+TGG + chr7_1:18707213-18707232 Msa1012920:intron 25.0%
!! AAGTCATTGATTATATTCAG+AGG + chr7_1:18707377-18707396 Msa1012920:CDS 25.0%
!! AGTCATTGATTATATTCAGA+GGG + chr7_1:18707378-18707397 Msa1012920:CDS 25.0%
!! GGAATATGTAGATTTGAAAT+TGG + chr7_1:18707534-18707553 Msa1012920:intron 25.0%
! GTCTACTAATTAAATTGGTA+TGG - chr7_1:18707858-18707877 None:intergenic 25.0%
! GTTGAGTCTACTAATTAAAT+TGG - chr7_1:18707863-18707882 None:intergenic 25.0%
! AATTGCGTTATTGATAAACT+GGG - chr7_1:18707955-18707974 None:intergenic 25.0%
! AAATTGCGTTATTGATAAAC+TGG - chr7_1:18707956-18707975 None:intergenic 25.0%
! TCCAGGATAACTTATTAAAA+CGG - chr7_1:18708989-18709008 None:intergenic 25.0%
!!! TATATAGTTGTGAGGTTTTT+TGG - chr7_1:18709075-18709094 None:intergenic 25.0%
!!! ATTTTTTTTGAAACAGCCAA+TGG + chr7_1:18709518-18709537 Msa1012920:intron 25.0%
! AACAATTAACCTAATACCAT+TGG - chr7_1:18709537-18709556 None:intergenic 25.0%
! AGTATACCATTGAAGAATAA+GGG - chr7_1:18709795-18709814 None:intergenic 25.0%
! TAGTATACCATTGAAGAATA+AGG - chr7_1:18709796-18709815 None:intergenic 25.0%
! ACTAAGATATGTTTATATGC+AGG + chr7_1:18709812-18709831 Msa1012920:intron 25.0%
! CTAAGATATGTTTATATGCA+GGG + chr7_1:18709813-18709832 Msa1012920:intron 25.0%
! TAAGATATGTTTATATGCAG+GGG + chr7_1:18709814-18709833 Msa1012920:intron 25.0%
! TGTACAGTAACATATTACTT+AGG + chr7_1:18710357-18710376 Msa1012920:three_prime_UTR 25.0%
! CATTTAGTTGTGTTTGTATA+TGG + chr7_1:18710433-18710452 Msa1012920:three_prime_UTR 25.0%
! TTTGGAAATTTATTAGACCA+AGG + chr7_1:18710645-18710664 Msa1012920:three_prime_UTR 25.0%
! AGGGGAAATAATTATTGAAT+CGG + chr7_1:18710680-18710699 Msa1012920:three_prime_UTR 25.0%
! TAATTATTGAATCGGAATTG+AGG + chr7_1:18710688-18710707 Msa1012920:three_prime_UTR 25.0%
TTAAACTAGGATCTAATTGG+CGG - chr7_1:18705762-18705781 None:intergenic 30.0%
TAAAAAGTGAAGTAGGTAAG+TGG - chr7_1:18705815-18705834 None:intergenic 30.0%
TGAAGAAATGAAATATGCAG+AGG - chr7_1:18705918-18705937 None:intergenic 30.0%
ATGAATATGCGAAGCTTATA+AGG + chr7_1:18705997-18706016 Msa1012920:CDS 30.0%
TGGTTACGCATATTCATATA+TGG - chr7_1:18706326-18706345 None:intergenic 30.0%
TTAATGAGCTTGAATCGATT+TGG + chr7_1:18706365-18706384 Msa1012920:intron 30.0%
!! TTAATTGGCTCGAATCAATT+TGG + chr7_1:18706427-18706446 Msa1012920:intron 30.0%
!! TTAATTGACTCGAATCGATT+TGG + chr7_1:18706551-18706570 Msa1012920:intron 30.0%
AGTAAAAATTGTTCCAACTC+AGG - chr7_1:18706648-18706667 None:intergenic 30.0%
ACTTGACTTTACTTACCTTA+TGG + chr7_1:18706665-18706684 Msa1012920:intron 30.0%
ATATGTTTGTGTTGGAATTG+TGG + chr7_1:18706758-18706777 Msa1012920:intron 30.0%
AAATTGCAATCTATGAAGCA+CGG - chr7_1:18707039-18707058 None:intergenic 30.0%
TTGACAGTGTAAACAAACAT+GGG + chr7_1:18707098-18707117 Msa1012920:CDS 30.0%
! GGTTCATATCTGAAATAACT+TGG - chr7_1:18707141-18707160 None:intergenic 30.0%
CTTCTGATCCAAGTATTAAT+TGG + chr7_1:18707291-18707310 Msa1012920:intron 30.0%
! TTTTGCAGTGTTTAATGTGA+CGG + chr7_1:18707324-18707343 Msa1012920:intron 30.0%
ATTGATTATATTCAGAGGGT+AGG + chr7_1:18707382-18707401 Msa1012920:intron 30.0%
!! TGAAGATTTCTAGCAAAGAA+CGG - chr7_1:18707488-18707507 None:intergenic 30.0%
! AATCTTCAAGTTAAGTAAGC+AGG + chr7_1:18707500-18707519 Msa1012920:intron 30.0%
AATCAACATGCAGAAAATGA+GGG - chr7_1:18707611-18707630 None:intergenic 30.0%
! TTTTCATCAAAGCGAATTGT+TGG + chr7_1:18707651-18707670 Msa1012920:intron 30.0%
TTTCCTAATCGAAATTACGT+TGG + chr7_1:18707721-18707740 Msa1012920:intron 30.0%
AAACCAACGTAATTTCGATT+AGG - chr7_1:18707727-18707746 None:intergenic 30.0%
CTCAAATTGACAAAAGTGAA+GGG - chr7_1:18707894-18707913 None:intergenic 30.0%
TCTCAAATTGACAAAAGTGA+AGG - chr7_1:18707895-18707914 None:intergenic 30.0%
ATTGCGTTATTGATAAACTG+GGG - chr7_1:18707954-18707973 None:intergenic 30.0%
! TTTTAGTCCATGCAAATTTG+TGG + chr7_1:18707973-18707992 Msa1012920:intron 30.0%
! ATCAGATTATGTTTGCTGAT+AGG + chr7_1:18708518-18708537 Msa1012920:CDS 30.0%
! TCAGATTATGTTTGCTGATA+GGG + chr7_1:18708519-18708538 Msa1012920:CDS 30.0%
ACAATATCAAACAACAGCTT+CGG - chr7_1:18708667-18708686 None:intergenic 30.0%
! ATGCAGTATGTAGTTTTTCA+TGG + chr7_1:18708703-18708722 Msa1012920:CDS 30.0%
ACAAGTTCAGAAAACGAAAA+AGG - chr7_1:18708811-18708830 None:intergenic 30.0%
!! TTCGTTTTCTGAACTTGTTT+AGG + chr7_1:18708813-18708832 Msa1012920:intron 30.0%
!! TCGTTTTCTGAACTTGTTTA+GGG + chr7_1:18708814-18708833 Msa1012920:intron 30.0%
AAACAGAGACTATGTTTGAT+GGG - chr7_1:18708853-18708872 None:intergenic 30.0%
AGTTTATGTAAGCACTTATC+TGG - chr7_1:18708911-18708930 None:intergenic 30.0%
! TTTTATATTCGGCATGTTGA+TGG + chr7_1:18709255-18709274 Msa1012920:CDS 30.0%
ATAAATAATAACACACCTGC+TGG + chr7_1:18709362-18709381 Msa1012920:intron 30.0%
GAAATAAGCTGATGTTTGTT+TGG + chr7_1:18709487-18709506 Msa1012920:intron 30.0%
! ATGAGCTTTTCAAATCAAGT+AGG - chr7_1:18709630-18709649 None:intergenic 30.0%
GCAGAAATATCAACAGAAAA+CGG + chr7_1:18709927-18709946 Msa1012920:CDS 30.0%
CAGAAATATCAACAGAAAAC+GGG + chr7_1:18709928-18709947 Msa1012920:CDS 30.0%
CGGATTGAATCAATAATCTT+CGG - chr7_1:18710005-18710024 None:intergenic 30.0%
ACAACAATTGGATTTCTCTT+TGG + chr7_1:18710095-18710114 Msa1012920:CDS 30.0%
!!! TCTCTTTGGAAGTTTTTTCA+AGG + chr7_1:18710109-18710128 Msa1012920:CDS 30.0%
CTTACACTAGACTAAATCAT+AGG - chr7_1:18710331-18710350 None:intergenic 30.0%
!! CCAAAAGTACTATTTACTCT+TGG - chr7_1:18710486-18710505 None:intergenic 30.0%
! CCAAGAGTAAATAGTACTTT+TGG + chr7_1:18710483-18710502 Msa1012920:three_prime_UTR 30.0%
! GAGTAAATAGTACTTTTGGT+TGG + chr7_1:18710487-18710506 Msa1012920:three_prime_UTR 30.0%
!! TACTTTTGGTTGGTGTAATT+TGG + chr7_1:18710497-18710516 Msa1012920:three_prime_UTR 30.0%
! TTCACTCAATATTGTTGCTT+TGG + chr7_1:18710627-18710646 Msa1012920:three_prime_UTR 30.0%
GAAATTTATTAGACCAAGGT+TGG + chr7_1:18710649-18710668 Msa1012920:three_prime_UTR 30.0%
GATTTCCAAACTGTTGTATT+TGG + chr7_1:18710828-18710847 Msa1012920:three_prime_UTR 30.0%
GAAATCCAAATACAACAGTT+TGG - chr7_1:18710836-18710855 None:intergenic 30.0%
TCTTTCTCTTTCCTTAGTTG+TGG + chr7_1:18705845-18705864 Msa1012920:five_prime_UTR 35.0%
CTTTCTCTTTCCTTAGTTGT+GGG + chr7_1:18705846-18705865 Msa1012920:five_prime_UTR 35.0%
AAGAAATTCTCCCACAACTA+AGG - chr7_1:18705859-18705878 None:intergenic 35.0%
ATATGCAGAGGCAAGAAATT+TGG - chr7_1:18705906-18705925 None:intergenic 35.0%
AATATGCGAAGCTTATAAGG+AGG + chr7_1:18706000-18706019 Msa1012920:CDS 35.0%
!! CTGGGTTTGTTACTTCTATT+TGG + chr7_1:18706254-18706273 Msa1012920:intron 35.0%
!! GGTTTGTTACTTCTATTTGG+TGG + chr7_1:18706257-18706276 Msa1012920:intron 35.0%
ATATGCGTAACCAAGTGATT+CGG + chr7_1:18706333-18706352 Msa1012920:intron 35.0%
TACTTGAGTTTGAATCCAAG+TGG + chr7_1:18706576-18706595 Msa1012920:intron 35.0%
TCTCAAATTATTAGCGGTGT+CGG + chr7_1:18706978-18706997 Msa1012920:intron 35.0%
GTTGACAGTGTAAACAAACA+TGG + chr7_1:18707097-18707116 Msa1012920:CDS 35.0%
AAACAAACATGGGATACTCT+TGG + chr7_1:18707108-18707127 Msa1012920:CDS 35.0%
AAGGCTTATATTTCCTCTGA+TGG + chr7_1:18707172-18707191 Msa1012920:CDS 35.0%
ATATTTCCTCTGATGGAGTT+TGG + chr7_1:18707179-18707198 Msa1012920:CDS 35.0%
! AACTTTTGGCATGCGTAATT+CGG + chr7_1:18707227-18707246 Msa1012920:intron 35.0%
!! TTTAATGTGACGGATCGAAA+TGG + chr7_1:18707334-18707353 Msa1012920:CDS 35.0%
AGTAAGCAGGACAATGATAT+TGG + chr7_1:18707513-18707532 Msa1012920:intron 35.0%
AAAACGATCCTAAAGATCAG+AGG - chr7_1:18707587-18707606 None:intergenic 35.0%
CAATCAACATGCAGAAAATG+AGG - chr7_1:18707612-18707631 None:intergenic 35.0%
!! TTGGTTTTCTGTATTCTTCG+AGG + chr7_1:18707740-18707759 Msa1012920:intron 35.0%
CTATTAGCCACAAATTTGCA+TGG - chr7_1:18707983-18708002 None:intergenic 35.0%
!! TTATTTCTAACAGCCAGATC+AGG - chr7_1:18708022-18708041 None:intergenic 35.0%
ATAACAGTGTGTTCTTCAGT+AGG - chr7_1:18708214-18708233 None:intergenic 35.0%
CACACTGTTATTGAACTTAC+TGG + chr7_1:18708223-18708242 Msa1012920:CDS 35.0%
CAGATTTCAGATAGTAAACC+AGG - chr7_1:18708259-18708278 None:intergenic 35.0%
! ATCATCGGTTACATGAACTA+CGG - chr7_1:18708353-18708372 None:intergenic 35.0%
GGACTATGAAAGAGTTGAAA+GGG + chr7_1:18708540-18708559 Msa1012920:CDS 35.0%
GGACTTAGAGAAAGAGATAA+AGG + chr7_1:18708565-18708584 Msa1012920:CDS 35.0%
TACTGAAAGGGATTATACTG+TGG + chr7_1:18708618-18708637 Msa1012920:CDS 35.0%
! GTATGTAGTTTTTCATGGTG+TGG + chr7_1:18708708-18708727 Msa1012920:CDS 35.0%
GGTGAACGATCATTTCTTAA+CGG - chr7_1:18708790-18708809 None:intergenic 35.0%
CAAACAGAGACTATGTTTGA+TGG - chr7_1:18708854-18708873 None:intergenic 35.0%
CATCAAACATAGTCTCTGTT+TGG + chr7_1:18708852-18708871 Msa1012920:intron 35.0%
! GAAGAACACAGTTTGACTTT+AGG - chr7_1:18708954-18708973 None:intergenic 35.0%
!! GCCGTTTTAATAAGTTATCC+TGG + chr7_1:18708985-18709004 Msa1012920:intron 35.0%
!!! GTTTTTTGGAAGAGTGCTTA+TGG - chr7_1:18709061-18709080 None:intergenic 35.0%
TGAAATAAGTCATTCCAACC+AGG + chr7_1:18709110-18709129 Msa1012920:intron 35.0%
AACTTAACAGTATATAGGCC+TGG - chr7_1:18709131-18709150 None:intergenic 35.0%
! GAGAGTTGTTCATGTTGTTT+AGG + chr7_1:18709230-18709249 Msa1012920:intron 35.0%
ACTTATACAGTGTCTTGAAG+CGG + chr7_1:18709311-18709330 Msa1012920:CDS 35.0%
TTGAAACAGCCAATGGTATT+AGG + chr7_1:18709525-18709544 Msa1012920:intron 35.0%
ATATGTTTATATGCAGGGGA+TGG + chr7_1:18709818-18709837 Msa1012920:intron 35.0%
TGATACATAAACTGTTCTCG+CGG - chr7_1:18709902-18709921 None:intergenic 35.0%
AATATCAACAGAAAACGGGA+AGG + chr7_1:18709932-18709951 Msa1012920:CDS 35.0%
CAATAATCTTCGGATCAACT+GGG - chr7_1:18709995-18710014 None:intergenic 35.0%
TCAATAATCTTCGGATCAAC+TGG - chr7_1:18709996-18710015 None:intergenic 35.0%
! AATCCAATTGTTGTTCCTTG+AGG - chr7_1:18710089-18710108 None:intergenic 35.0%
GAAATAGCGAGAATATACAC+AGG - chr7_1:18710188-18710207 None:intergenic 35.0%
TGGAATTTATACTGCACAGT+AGG + chr7_1:18710293-18710312 Msa1012920:three_prime_UTR 35.0%
!! CATATTACTTAGGTTGAGTG+TGG + chr7_1:18710367-18710386 Msa1012920:three_prime_UTR 35.0%
AGCACAGATTCACATTTACA+TGG - chr7_1:18710526-18710545 None:intergenic 35.0%
ATTGAGTGAAATAGAGAGAG+AGG - chr7_1:18710617-18710636 None:intergenic 35.0%
!!! GACTCAGGTATTGTTGTTTT+TGG + chr7_1:18710806-18710825 Msa1012920:three_prime_UTR 35.0%
GGACTTCATAATTTCCTCTC+TGG + chr7_1:18706222-18706241 Msa1012920:intron 40.0%
!! TCCTCTCTGGAATGATAATC+TGG + chr7_1:18706235-18706254 Msa1012920:intron 40.0%
!! CCTCTCTGGAATGATAATCT+GGG + chr7_1:18706236-18706255 Msa1012920:intron 40.0%
! AACGACTTGGATTCAAACTC+AGG - chr7_1:18706395-18706414 None:intergenic 40.0%
GAGTTTGAATCCAAGTCGTT+CGG + chr7_1:18706395-18706414 Msa1012920:intron 40.0%
GAGTAACTGAGTTTGAATCC+AGG + chr7_1:18706449-18706468 Msa1012920:intron 40.0%
TAACTGAGTTTGAATCCAGG+TGG + chr7_1:18706452-18706471 Msa1012920:intron 40.0%
AACCACTTGGATTCAAACTC+AGG - chr7_1:18706519-18706538 None:intergenic 40.0%
GAGTTTGAATCCAAGTGGTT+CGG + chr7_1:18706519-18706538 Msa1012920:intron 40.0%
GAGTTTGAATCCAAGTGGTT+CGG + chr7_1:18706519-18706538 Msa1012920:intron 40.0%
!! TCAATTAGGAGTACCTGAGT+TGG + chr7_1:18706632-18706651 Msa1012920:intron 40.0%
! TAATCTGGAATCCCGGATTT+CGG - chr7_1:18706691-18706710 None:intergenic 40.0%
TGAAAACGCCACTGTTATTC+AGG + chr7_1:18706836-18706855 Msa1012920:CDS 40.0%
AAGCCATACCTGAATAACAG+TGG - chr7_1:18706847-18706866 None:intergenic 40.0%
CATAAACCAAACTCCATCAG+AGG - chr7_1:18707188-18707207 None:intergenic 40.0%
! CTCTGATGGAGTTTGGTTTA+TGG + chr7_1:18707186-18707205 Msa1012920:CDS 40.0%
! GATGGAGTTTGGTTTATGGA+TGG + chr7_1:18707190-18707209 Msa1012920:CDS 40.0%
! ACTTTTGGCATGCGTAATTC+GGG + chr7_1:18707228-18707247 Msa1012920:intron 40.0%
! TTTTTGTTGCTCCATCTCTG+TGG + chr7_1:18707449-18707468 Msa1012920:intron 40.0%
ATCAATCGCCTCTGATCTTT+AGG + chr7_1:18707576-18707595 Msa1012920:intron 40.0%
TCATCAAAGCGAATTGTTGG+AGG + chr7_1:18707654-18707673 Msa1012920:intron 40.0%
CATCAAAGCGAATTGTTGGA+GGG + chr7_1:18707655-18707674 Msa1012920:intron 40.0%
ATCAAAGCGAATTGTTGGAG+GGG + chr7_1:18707656-18707675 Msa1012920:intron 40.0%
AGATTGTGTGCATGAACTTG+CGG + chr7_1:18707765-18707784 Msa1012920:intron 40.0%
ACAAAAGTGAAGGGATCAGA+TGG - chr7_1:18707885-18707904 None:intergenic 40.0%
CTCATTGACGTTTCAAAGCT+CGG - chr7_1:18708172-18708191 None:intergenic 40.0%
ATTATGCGTCCAAATCTCAG+CGG - chr7_1:18708317-18708336 None:intergenic 40.0%
GCAAAGCAAATCCCTTATTG+TGG - chr7_1:18708413-18708432 None:intergenic 40.0%
!! AGTGCAGTTTTTGCTGTCTT+CGG - chr7_1:18708460-18708479 None:intergenic 40.0%
AAAACTGCACTTTCACATCC+TGG + chr7_1:18708469-18708488 Msa1012920:CDS 40.0%
ACATCCTGGAGTTACGTATA+GGG + chr7_1:18708483-18708502 Msa1012920:CDS 40.0%
GGGACTATGAAAGAGTTGAA+AGG + chr7_1:18708539-18708558 Msa1012920:CDS 40.0%
TATGAAAGAGTTGAAAGGGC+AGG + chr7_1:18708544-18708563 Msa1012920:CDS 40.0%
TGTCTCAGACTGTACTGAAA+GGG + chr7_1:18708606-18708625 Msa1012920:CDS 40.0%
TAACAGTATATAGGCCTGGT+TGG - chr7_1:18709127-18709146 None:intergenic 40.0%
AGTTTCATTCGGTCAGAACA+TGG + chr7_1:18709147-18709166 Msa1012920:intron 40.0%
GTTTCATTCGGTCAGAACAT+GGG + chr7_1:18709148-18709167 Msa1012920:intron 40.0%
AGCACACCCTTATTCTTCAA+TGG + chr7_1:18709786-18709805 Msa1012920:intron 40.0%
! TTTTACGTCACCGATGTAAC+TGG + chr7_1:18709966-18709985 Msa1012920:CDS 40.0%
AACTGGGTTACCAGTTACAT+CGG - chr7_1:18709979-18709998 None:intergenic 40.0%
GATTCAATCCGTAGACAGAT+CGG + chr7_1:18710014-18710033 Msa1012920:CDS 40.0%
! ACCAAGGTTGGTTGAAACAA+GGG + chr7_1:18710661-18710680 Msa1012920:three_prime_UTR 40.0%
AACTAGGATCTAATTGGCGG+TGG - chr7_1:18705759-18705778 None:intergenic 45.0%
GCAGAGGCAAGAAATTTGGA+GGG - chr7_1:18705902-18705921 None:intergenic 45.0%
TGCAGAGGCAAGAAATTTGG+AGG - chr7_1:18705903-18705922 None:intergenic 45.0%
CCCAGATTATCATTCCAGAG+AGG - chr7_1:18706239-18706258 None:intergenic 45.0%
GTTCGGCTCAAGTGGTTAAT+TGG + chr7_1:18706412-18706431 Msa1012920:intron 45.0%
GAGTTTGAATCCAGGTGGTT+AGG + chr7_1:18706457-18706476 Msa1012920:intron 45.0%
TGCCTGAGTTTGAATCCAAG+TGG + chr7_1:18706514-18706533 Msa1012920:intron 45.0%
!! TCCAAGTGGTTCGGTTTAAG+TGG + chr7_1:18706528-18706547 Msa1012920:intron 45.0%
ACCACTTAAACCGAACCACT+TGG - chr7_1:18706532-18706551 None:intergenic 45.0%
CTTACCTTATGGCCGAAATC+CGG + chr7_1:18706676-18706695 Msa1012920:intron 45.0%
TTACCTTATGGCCGAAATCC+GGG + chr7_1:18706677-18706696 Msa1012920:intron 45.0%
! TAACTCGCTTCTTGCTATGC+AGG + chr7_1:18706790-18706809 Msa1012920:intron 45.0%
! AACTCGCTTCTTGCTATGCA+GGG + chr7_1:18706791-18706810 Msa1012920:intron 45.0%
ACGCCACTGTTATTCAGGTA+TGG + chr7_1:18706841-18706860 Msa1012920:intron 45.0%
ATGAAGCACGGATACAGACA+CGG - chr7_1:18707027-18707046 None:intergenic 45.0%
CGCATGCCAAAAGTTAAGAG+AGG - chr7_1:18707222-18707241 None:intergenic 45.0%
AAATCACCCTTCCACAGAGA+TGG - chr7_1:18707463-18707482 None:intergenic 45.0%
TCAAAGCGAATTGTTGGAGG+GGG + chr7_1:18707657-18707676 Msa1012920:intron 45.0%
GATTGTGTGCATGAACTTGC+GGG + chr7_1:18707766-18707785 Msa1012920:intron 45.0%
ATGAACTTGCGGGATTCATC+TGG + chr7_1:18707776-18707795 Msa1012920:intron 45.0%
ACGTCAATGAGAGAGTCTGT+TGG + chr7_1:18708181-18708200 Msa1012920:CDS 45.0%
CGTCAATGAGAGAGTCTGTT+GGG + chr7_1:18708182-18708201 Msa1012920:CDS 45.0%
GTCAATGAGAGAGTCTGTTG+GGG + chr7_1:18708183-18708202 Msa1012920:CDS 45.0%
TTGAACTTACTGGCACAGAC+AGG + chr7_1:18708233-18708252 Msa1012920:CDS 45.0%
CATGTAACCGATGATTCCAG+TGG + chr7_1:18708358-18708377 Msa1012920:CDS 45.0%
ATCTTCTATGGCACAACCAC+TGG - chr7_1:18708377-18708396 None:intergenic 45.0%
AATCCCTTATTGTGGAGAGG+CGG - chr7_1:18708405-18708424 None:intergenic 45.0%
GCAAATCCCTTATTGTGGAG+AGG - chr7_1:18708408-18708427 None:intergenic 45.0%
ATTTGCTTTGCAACGTCCTC+AGG + chr7_1:18708422-18708441 Msa1012920:CDS 45.0%
TTTGCTTTGCAACGTCCTCA+GGG + chr7_1:18708423-18708442 Msa1012920:CDS 45.0%
CACATCCTGGAGTTACGTAT+AGG + chr7_1:18708482-18708501 Msa1012920:CDS 45.0%
CTATCCCTATACGTAACTCC+AGG - chr7_1:18708490-18708509 None:intergenic 45.0%
GAGACAGTTACATGCGGAAA+TGG - chr7_1:18708592-18708611 None:intergenic 45.0%
! CAGTCTGAGACAGTTACATG+CGG - chr7_1:18708598-18708617 None:intergenic 45.0%
CTGTCTCAGACTGTACTGAA+AGG + chr7_1:18708605-18708624 Msa1012920:CDS 45.0%
ATGGTGTGGTTCAGACAGAA+AGG + chr7_1:18708722-18708741 Msa1012920:CDS 45.0%
TGGTTCAGACAGAAAGGACA+GGG + chr7_1:18708728-18708747 Msa1012920:CDS 45.0%
CACTTATCTGGTGCTTACAC+TGG - chr7_1:18708899-18708918 None:intergenic 45.0%
CAGCTTATTTCAAGCTCTCC+AGG - chr7_1:18709006-18709025 None:intergenic 45.0%
CTTTCAGCCTCTGAGCTTAT+GGG - chr7_1:18709285-18709304 None:intergenic 45.0%
TCTTTCAGCCTCTGAGCTTA+TGG - chr7_1:18709286-18709305 None:intergenic 45.0%
TATCCGAGAGTAGTCCTACA+CGG - chr7_1:18709866-18709885 None:intergenic 45.0%
GACTACTCTCGGATATCACA+AGG + chr7_1:18709871-18709890 Msa1012920:CDS 45.0%
CTTTCACCAAAACCACCTCA+AGG + chr7_1:18710071-18710090 Msa1012920:CDS 45.0%
! GTTGTTCCTTGAGGTGGTTT+TGG - chr7_1:18710080-18710099 None:intergenic 45.0%
! CCAATTGTTGTTCCTTGAGG+TGG - chr7_1:18710086-18710105 None:intergenic 45.0%
CCACCTCAAGGAACAACAAT+TGG + chr7_1:18710083-18710102 Msa1012920:CDS 45.0%
ATACACAGGAGAGGACGTTT+AGG - chr7_1:18710174-18710193 None:intergenic 45.0%
AGCGAGAATATACACAGGAG+AGG - chr7_1:18710183-18710202 None:intergenic 45.0%
! ATTTTCCTCCCCTTAGCAAG+AGG + chr7_1:18710266-18710285 Msa1012920:three_prime_UTR 45.0%
! TTTTCCTCCCCTTAGCAAGA+GGG + chr7_1:18710267-18710286 Msa1012920:three_prime_UTR 45.0%
! GACCAAGGTTGGTTGAAACA+AGG + chr7_1:18710660-18710679 Msa1012920:three_prime_UTR 45.0%
! CCAAGGTTGGTTGAAACAAG+GGG + chr7_1:18710662-18710681 Msa1012920:three_prime_UTR 45.0%
TGAGGAATATTGCTCGAGTG+CGG + chr7_1:18710706-18710725 Msa1012920:three_prime_UTR 45.0%
!! GTTTTGGCGAAAGAAGACTC+AGG + chr7_1:18710791-18710810 Msa1012920:three_prime_UTR 45.0%
!! TATTTATATTATTATTGTTA+TGG + chr7_1:18706094-18706113 Msa1012920:intron 5.0%
!!! TTATCAATTTTTTATTTTTA+TGG + chr7_1:18706201-18706220 Msa1012920:intron 5.0%
!! AAATAGATAAAATTATAAAA+AGG + chr7_1:18709601-18709620 Msa1012920:intron 5.0%
TAAGGAGGATGAACCCACCT+AGG + chr7_1:18706015-18706034 Msa1012920:CDS 50.0%
! ACCAAGTGATTCGGCTCAAG+TGG + chr7_1:18706342-18706361 Msa1012920:intron 50.0%
ACCACTTGAGCCGAATCACT+TGG - chr7_1:18706346-18706365 None:intergenic 50.0%
TCCAGGTGGTTAGGCTTAAG+TGG + chr7_1:18706466-18706485 Msa1012920:intron 50.0%
ACCACTTAAGCCTAACCACC+TGG - chr7_1:18706470-18706489 None:intergenic 50.0%
AATCCCGGATTTCGGCCATA+AGG - chr7_1:18706683-18706702 None:intergenic 50.0%
! GGGCTACTAATCTGGAATCC+CGG - chr7_1:18706698-18706717 None:intergenic 50.0%
TCAGGAAGGGGCTACTAATC+TGG - chr7_1:18706706-18706725 None:intergenic 50.0%
TTAGTAGCCCCTTCCTGAGT+TGG + chr7_1:18706708-18706727 Msa1012920:intron 50.0%
TAACCCTCCAACTCAGGAAG+GGG - chr7_1:18706718-18706737 None:intergenic 50.0%
CTAACCCTCCAACTCAGGAA+GGG - chr7_1:18706719-18706738 None:intergenic 50.0%
TGTTGCTCCATCTCTGTGGA+AGG + chr7_1:18707453-18707472 Msa1012920:intron 50.0%
GTTGCTCCATCTCTGTGGAA+GGG + chr7_1:18707454-18707473 Msa1012920:intron 50.0%
CAAAGCGAATTGTTGGAGGG+GGG + chr7_1:18707658-18707677 Msa1012920:intron 50.0%
GCAGAGATGTTGACCTGATC+TGG + chr7_1:18708006-18708025 Msa1012920:intron 50.0%
ACGTGGTTACCGCTGAGATT+TGG + chr7_1:18708305-18708324 Msa1012920:CDS 50.0%
GGCACAACCACTGGAATCAT+CGG - chr7_1:18708368-18708387 None:intergenic 50.0%
ATCCCTTATTGTGGAGAGGC+GGG - chr7_1:18708404-18708423 None:intergenic 50.0%
TTGCTTTGCAACGTCCTCAG+GGG + chr7_1:18708424-18708443 Msa1012920:CDS 50.0%
GTGGTTCAGACAGAAAGGAC+AGG + chr7_1:18708727-18708746 Msa1012920:CDS 50.0%
GGTTCAGACAGAAAGGACAG+GGG + chr7_1:18708729-18708748 Msa1012920:CDS 50.0%
AGAAAGGACAGGGGCTTATC+AGG + chr7_1:18708738-18708757 Msa1012920:CDS 50.0%
CATTCGGTCAGAACATGGGT+TGG + chr7_1:18709152-18709171 Msa1012920:intron 50.0%
!! TGGGTTGGTCTGCTTCAGTT+TGG + chr7_1:18709167-18709186 Msa1012920:intron 50.0%
!! GGGTTGGTCTGCTTCAGTTT+GGG + chr7_1:18709168-18709187 Msa1012920:intron 50.0%
TGGCTTTCCCATAAGCTCAG+AGG + chr7_1:18709275-18709294 Msa1012920:CDS 50.0%
GTCTTGAAGCGGCAATTGAG+AGG + chr7_1:18709322-18709341 Msa1012920:CDS 50.0%
TTGAAGCGGCAATTGAGAGG+CGG + chr7_1:18709325-18709344 Msa1012920:CDS 50.0%
ACTCCATACCTCGCTCTTTC+AGG + chr7_1:18709387-18709406 Msa1012920:intron 50.0%
TTATATGCAGGGGATGGAGC+TGG + chr7_1:18709824-18709843 Msa1012920:intron 50.0%
TTGTGCACAGAAGACCGTGT+AGG + chr7_1:18709849-18709868 Msa1012920:CDS 50.0%
AGACCGTGTAGGACTACTCT+CGG + chr7_1:18709860-18709879 Msa1012920:CDS 50.0%
TTTCCTCCCCTTAGCAAGAG+GGG + chr7_1:18710268-18710287 Msa1012920:three_prime_UTR 50.0%
TTCCAAGCCCCTCTTGCTAA+GGG - chr7_1:18710278-18710297 None:intergenic 50.0%
ATTCCAAGCCCCTCTTGCTA+AGG - chr7_1:18710279-18710298 None:intergenic 50.0%
! CCCCTTGTTTCAACCAACCT+TGG - chr7_1:18710665-18710684 None:intergenic 50.0%
GAGGAATATTGCTCGAGTGC+GGG + chr7_1:18710707-18710726 Msa1012920:three_prime_UTR 50.0%
TCCAAGTCGTTCGGCTCAAG+TGG + chr7_1:18706404-18706423 Msa1012920:intron 55.0%
ACCACTTGAGCCGAACGACT+TGG - chr7_1:18706408-18706427 None:intergenic 55.0%
! TCCAAGTGGTTCGGCTCAAG+TGG + chr7_1:18706590-18706609 Msa1012920:intron 55.0%
ACCACTTGAGCCGAACCACT+TGG - chr7_1:18706594-18706613 None:intergenic 55.0%
! TAGCCCCTTCCTGAGTTGGA+GGG + chr7_1:18706712-18706731 Msa1012920:intron 55.0%
CCTAACCCTCCAACTCAGGA+AGG - chr7_1:18706720-18706739 None:intergenic 55.0%
! CCTTCCTGAGTTGGAGGGTT+AGG + chr7_1:18706717-18706736 Msa1012920:intron 55.0%
TGGTCCTAACCCTCCAACTC+AGG - chr7_1:18706724-18706743 None:intergenic 55.0%
ACAGACACGGACACCAGACA+CGG - chr7_1:18707014-18707033 None:intergenic 55.0%
CTTATTGTGGAGAGGCGGGA+CGG - chr7_1:18708400-18708419 None:intergenic 55.0%
GTCCCGCCTCTCCACAATAA+GGG + chr7_1:18708399-18708418 Msa1012920:CDS 55.0%
TGCTTTGCAACGTCCTCAGG+GGG + chr7_1:18708425-18708444 Msa1012920:CDS 55.0%
TGAAGCGGCAATTGAGAGGC+GGG + chr7_1:18709326-18709345 Msa1012920:CDS 55.0%
AATTGAGAGGCGGGCATCTG+AGG + chr7_1:18709335-18709354 Msa1012920:CDS 55.0%
CGAGGTATGGAGTTTCCAGC+AGG - chr7_1:18709380-18709399 None:intergenic 55.0%
CTTAACGGCCTGAAAGAGCG+AGG - chr7_1:18709398-18709417 None:intergenic 55.0%
TCCAAGCCCCTCTTGCTAAG+GGG - chr7_1:18710277-18710296 None:intergenic 55.0%
! GTAGCCCCTTCCTGAGTTGG+AGG + chr7_1:18706711-18706730 Msa1012920:intron 60.0%
CTTACTGGCACAGACAGGCC+TGG + chr7_1:18708238-18708257 Msa1012920:CDS 60.0%
CGGTAACCACGTTGCAGCGA+AGG - chr7_1:18708297-18708316 None:intergenic 60.0%
GAGGCGGGACGGATCTTCTA+TGG - chr7_1:18708389-18708408 None:intergenic 60.0%
CGTCCCGCCTCTCCACAATA+AGG + chr7_1:18708398-18708417 Msa1012920:CDS 60.0%
TCGGATCATCACTCCCCCTG+AGG - chr7_1:18708441-18708460 None:intergenic 60.0%
CGGCCTGAAAGAGCGAGGTA+TGG - chr7_1:18709393-18709412 None:intergenic 60.0%
CCGTGTCGCCGATCTGTCTA+CGG - chr7_1:18710025-18710044 None:intergenic 60.0%
CCGTAGACAGATCGGCGACA+CGG + chr7_1:18710022-18710041 Msa1012920:CDS 60.0%
AAGCCCCTCTTGCTAAGGGG+AGG - chr7_1:18710274-18710293 None:intergenic 60.0%
TCCCCTTAGCAAGAGGGGCT+TGG + chr7_1:18710273-18710292 Msa1012920:three_prime_UTR 60.0%
CGGCTTGTCAGTGCCGTGTC+TGG + chr7_1:18706998-18707017 Msa1012920:intron 65.0%
CGCAGACCTTCGCTGCAACG+TGG + chr7_1:18708288-18708307 Msa1012920:CDS 65.0%
GATCGGCGACACGGTACTGC+AGG + chr7_1:18710031-18710050 Msa1012920:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 18705711 18710863 18705711 ID=Msa1012920;Name=Msa1012920
chr7_1 mRNA 18705711 18710863 18705711 ID=Msa1012920-mRNA-1;Parent=Msa1012920;Name=Msa1012920-mRNA-1;_AED=0.18;_eAED=0.18;_QI=279|1|1|1|1|1|7|688|442
chr7_1 exon 18705711 18706036 18705711 ID=Msa1012920-mRNA-1:exon:4622;Parent=Msa1012920-mRNA-1
chr7_1 exon 18706812 18706857 18706812 ID=Msa1012920-mRNA-1:exon:4623;Parent=Msa1012920-mRNA-1
chr7_1 exon 18707097 18707211 18707097 ID=Msa1012920-mRNA-1:exon:4624;Parent=Msa1012920-mRNA-1
chr7_1 exon 18707332 18707399 18707332 ID=Msa1012920-mRNA-1:exon:4625;Parent=Msa1012920-mRNA-1
chr7_1 exon 18708154 18708759 18708154 ID=Msa1012920-mRNA-1:exon:4626;Parent=Msa1012920-mRNA-1
chr7_1 exon 18709252 18709356 18709252 ID=Msa1012920-mRNA-1:exon:4627;Parent=Msa1012920-mRNA-1
chr7_1 exon 18709834 18710863 18709834 ID=Msa1012920-mRNA-1:exon:4628;Parent=Msa1012920-mRNA-1
chr7_1 five_prime_UTR 18705711 18705989 18705711 ID=Msa1012920-mRNA-1:five_prime_utr;Parent=Msa1012920-mRNA-1
chr7_1 CDS 18705990 18706036 18705990 ID=Msa1012920-mRNA-1:cds;Parent=Msa1012920-mRNA-1
chr7_1 CDS 18706812 18706857 18706812 ID=Msa1012920-mRNA-1:cds;Parent=Msa1012920-mRNA-1
chr7_1 CDS 18707097 18707211 18707097 ID=Msa1012920-mRNA-1:cds;Parent=Msa1012920-mRNA-1
chr7_1 CDS 18707332 18707399 18707332 ID=Msa1012920-mRNA-1:cds;Parent=Msa1012920-mRNA-1
chr7_1 CDS 18708154 18708759 18708154 ID=Msa1012920-mRNA-1:cds;Parent=Msa1012920-mRNA-1
chr7_1 CDS 18709252 18709356 18709252 ID=Msa1012920-mRNA-1:cds;Parent=Msa1012920-mRNA-1
chr7_1 CDS 18709834 18710175 18709834 ID=Msa1012920-mRNA-1:cds;Parent=Msa1012920-mRNA-1
chr7_1 three_prime_UTR 18710176 18710863 18710176 ID=Msa1012920-mRNA-1:three_prime_utr;Parent=Msa1012920-mRNA-1
Gene Sequence

>Msa1012920

ATGGATGATGAATATGCGAAGCTTATAAGGAGGATGAACCCACCTAGGGTTGTGATTGATAATAATGCATGTGAAAACGCCACTGTTATTCAGGTTGACAGTGTAAACAAACATGGGATACTCTTGGATGTAGTCCAAGTTATTTCAGATATGAACCTTGTGATTAAAAAGGCTTATATTTCCTCTGATGGAGTTTGGTTTATGGATGTGTTTAATGTGACGGATCGAAATGGAAACAAGATCAAAGATAAAGAAGTCATTGATTATATTCAGAGGAGACTTGAAAAGAATCCGAGCTTTGAAACGTCAATGAGAGAGTCTGTTGGGGTTGTACCTACTGAAGAACACACTGTTATTGAACTTACTGGCACAGACAGGCCTGGTTTACTATCTGAAATCTGTGCAGTTCTCGCAGACCTTCGCTGCAACGTGGTTACCGCTGAGATTTGGACGCATAATACTAGAGCTGCAGCCGTAGTTCATGTAACCGATGATTCCAGTGGTTGTGCCATAGAAGATCCGTCCCGCCTCTCCACAATAAGGGATTTGCTTTGCAACGTCCTCAGGGGGAGTGATGATCCGAAGACAGCAAAAACTGCACTTTCACATCCTGGAGTTACGTATAGGGATAGAAGATTACATCAGATTATGTTTGCTGATAGGGACTATGAAAGAGTTGAAAGGGCAGGACTTAGAGAAAGAGATAAAGGTCCATTTCCGCATGTAACTGTCTCAGACTGTACTGAAAGGGATTATACTGTGGTTATCATGAGAGCGAAAGATCGACCGAAGCTGTTGTTTGATATTGTTTGCACTTTAACTGACATGCAGTATGTAGTTTTTCATGGTGTGGTTCAGACAGAAAGGACAGGGGCTTATCAGGAGTTTTATATTCGGCATGTTGATGGCTTTCCCATAAGCTCAGAGGCTGAAAGAGAACGACTTATACAGTGTCTTGAAGCGGCAATTGAGAGGCGGGCATCTGAGGGGATGGAGCTGGAATTGTGCACAGAAGACCGTGTAGGACTACTCTCGGATATCACAAGGATTTTCCGCGAGAACAGTTTATGTATCAAACGAGCAGAAATATCAACAGAAAACGGGAAGGCGAAAGACACTTTTTACGTCACCGATGTAACTGGTAACCCAGTTGATCCGAAGATTATTGATTCAATCCGTAGACAGATCGGCGACACGGTACTGCAGGTGAAACATAACTCTAGTCTTTCACCAAAACCACCTCAAGGAACAACAATTGGATTTCTCTTTGGAAGTTTTTTCAAGGCTCGATCTTTTCAGAATTTTAAGCTGATCAAATCATATTCCTAA
Protein sequence

>Msa1012920

MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVIKKAYISSDGVWFMDVFNVTDRNGNKIKDKEVIDYIQRRLEKNPSFETSMRESVGVVPTEEHTVIELTGTDRPGLLSEICAVLADLRCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIEDPSRLSTIRDLLCNVLRGSDDPKTAKTALSHPGVTYRDRRLHQIMFADRDYERVERAGLRERDKGPFPHVTVSDCTERDYTVVIMRAKDRPKLLFDIVCTLTDMQYVVFHGVVQTERTGAYQEFYIRHVDGFPISSEAERERLIQCLEAAIERRASEGMELELCTEDRVGLLSDITRIFRENSLCIKRAEISTENGKAKDTFYVTDVTGNPVDPKIIDSIRRQIGDTVLQVKHNSSLSPKPPQGTTIGFLFGSFFKARSFQNFKLIKSYS*