AlfalfaGEDB | Msa1192880

M. sativa cultivar zhongmu-4 / Msa1192880

KEGG: -
GO: GO:0000003 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1192880	XP_003628747.2	88.267	375	20	2	1	371	1	355	0.0	610

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1192880	sp\|Q9C616\|KAN2_ARATH	47.743	421	135	16	1	370	1	387	6.00e-82	258

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1192880	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa1192880	0.806363	8.531672e-50	-8.615850e-47
Msa0035060	Msa1192880	0.823500	1.339558e-53	-8.615850e-47
Msa0173690	Msa1192880	0.826117	3.235403e-54	-8.615850e-47
Msa0225100	Msa1192880	0.800302	1.536063e-48	-8.615850e-47
Msa0240900	Msa1192880	0.809810	1.573887e-50	-8.615850e-47
Msa0244640	Msa1192880	0.804997	1.651487e-49	-8.615850e-47
Msa0266180	Msa1192880	0.800449	1.434112e-48	-8.615850e-47
Msa0283330	Msa1192880	0.802918	4.466244e-49	-8.615850e-47
Msa0287740	Msa1192880	0.812462	4.189453e-51	-8.615850e-47
Msa0300270	Msa1192880	0.802307	5.970224e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1192880	MtrunA17_Chr8g0366281	88.267	375	20	2	1	371	1	355	0.0	610
Msa1192880	MtrunA17_Chr5g0410741	55.944	429	98	16	1	368	1	399	4.45e-120	353
Msa1192880	MtrunA17_Chr3g0109981	45.299	234	71	7	153	368	258	452	4.22e-48	169
Msa1192880	MtrunA17_Chr6g0479431	44.037	218	86	7	153	368	184	367	3.86e-40	145
Msa1192880	MtrunA17_Chr1g0154261	84.722	72	11	0	164	235	121	192	1.78e-35	131
Msa1192880	MtrunA17_Chr7g0243081	44.737	114	59	1	130	243	36	145	9.38e-24	100
Msa1192880	MtrunA17_Chr1g0162931	67.241	58	19	0	168	225	17	74	9.55e-22	94.0
Msa1192880	MtrunA17_Chr1g0210911	65.517	58	20	0	168	225	21	78	2.00e-21	94.0
Msa1192880	MtrunA17_Chr8g0379121	62.295	61	23	0	168	228	110	170	1.68e-19	89.4
Msa1192880	MtrunA17_Chr2g0320231	63.934	61	22	0	168	228	96	156	1.97e-19	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1192880	AT1G32240.1	47.743	421	135	16	1	370	1	387	6.10e-83	258
Msa1192880	AT1G32240.2	50.000	334	113	13	1	288	1	326	1.57e-76	241
Msa1192880	AT4G17695.1	37.275	389	150	12	1	368	1	316	1.25e-53	180
Msa1192880	AT5G16560.1	40.210	286	110	8	9	243	21	296	5.25e-42	152
Msa1192880	AT5G42630.2	77.333	75	17	0	164	238	100	174	5.39e-35	128
Msa1192880	AT5G42630.1	79.452	73	15	0	164	236	100	172	1.67e-34	128
Msa1192880	AT1G32240.3	47.977	173	51	5	204	370	1	140	1.69e-29	111
Msa1192880	AT2G38300.1	40.580	138	68	4	154	288	43	169	7.10e-22	95.5
Msa1192880	AT4G04605.1	65.574	61	21	0	168	228	13	73	9.44e-22	92.8
Msa1192880	AT1G14600.1	69.492	59	18	0	169	227	23	81	4.01e-21	92.0

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Find 102 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATAGTTGTGTTAAGA+TGG	0.445495	8_1:+38868336	Msa1192880:exon
AAAGCTTAAGTGAAGAGTTA+GGG	0.427487	8_1:+38868653	Msa1192880:CDS
AAATTAATGGGCATAAGAGA+CGG	0.594538	8_1:+38874666	Msa1192880:three_prime_UTR
AACAAAGCGATTATGAAGAG+TGG	0.613873	8_1:-38868881	None:intergenic
AACAGGGAAGCTTGGTTGCA+TGG	0.521093	8_1:+38872511	Msa1192880:CDS
AACCAGTGTCCCTGGAGCAC+CGG	0.516011	8_1:-38874769	None:intergenic
AACCGGTGCTCCAGGGACAC+TGG	0.584708	8_1:+38874767	Msa1192880:three_prime_UTR
AACGAAAGATATTCCTCAGA+TGG	0.564563	8_1:+38874247	Msa1192880:CDS
AAGACACATTTCCAACAGGA+TGG	0.611319	8_1:-38872546	None:intergenic
AAGCATAAAATTGAGCTAAG+TGG	0.527251	8_1:+38868225	Msa1192880:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACAATGAGTGTGAAATGAA+TGG	-	chr8_1:38867988-38868007	None:intergenic	30.0%
AAGCATAAAATTGAGCTAAG+TGG	+	chr8_1:38868225-38868244	Msa1192880:five_prime_UTR	30.0%
ATGATAAATCTAGTTGTGCT+GGG	-	chr8_1:38868369-38868388	None:intergenic	30.0%
AATGATAAATCTAGTTGTGC+TGG	-	chr8_1:38868370-38868389	None:intergenic	30.0%
TGGTTGAAAAGAGTTATTGT+TGG	-	chr8_1:38868608-38868627	None:intergenic	30.0%
AAAGCTTAAGTGAAGAGTTA+GGG	+	chr8_1:38868653-38868672	Msa1192880:CDS	30.0%
GGTACGAAAATTTACTTTCA+TGG	-	chr8_1:38868930-38868949	None:intergenic	30.0%
AATCCAAACATGTTCAAAGA+AGG	-	chr8_1:38868951-38868970	None:intergenic	30.0%
CTTTGAACATGTTTGGATTA+AGG	+	chr8_1:38868952-38868971	Msa1192880:intron	30.0%
TTTGACAAAATTATCACGGT+GGG	-	chr8_1:38869046-38869065	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	38867975	38874852	38867975	ID=Msa1192880;Name=Msa1192880
chr8_1	mRNA	38867975	38874852	38867975	ID=Msa1192880-mRNA-1;Parent=Msa1192880;Name=Msa1192880-mRNA-1;_AED=0.04;_eAED=0.04;_QI=380\|0.8\|0.83\|1\|1\|1\|6\|507\|371
chr8_1	exon	38867975	38868934	38867975	ID=Msa1192880-mRNA-1:exon:12678;Parent=Msa1192880-mRNA-1
chr8_1	exon	38869150	38869226	38869150	ID=Msa1192880-mRNA-1:exon:12679;Parent=Msa1192880-mRNA-1
chr8_1	exon	38870657	38870702	38870657	ID=Msa1192880-mRNA-1:exon:12680;Parent=Msa1192880-mRNA-1
chr8_1	exon	38870820	38870982	38870820	ID=Msa1192880-mRNA-1:exon:12681;Parent=Msa1192880-mRNA-1
chr8_1	exon	38872450	38872576	38872450	ID=Msa1192880-mRNA-1:exon:12682;Parent=Msa1192880-mRNA-1
chr8_1	exon	38874223	38874852	38874223	ID=Msa1192880-mRNA-1:exon:12683;Parent=Msa1192880-mRNA-1
chr8_1	five_prime_UTR	38867975	38868354	38867975	ID=Msa1192880-mRNA-1:five_prime_utr;Parent=Msa1192880-mRNA-1
chr8_1	CDS	38868355	38868934	38868355	ID=Msa1192880-mRNA-1:cds;Parent=Msa1192880-mRNA-1
chr8_1	CDS	38869150	38869226	38869150	ID=Msa1192880-mRNA-1:cds;Parent=Msa1192880-mRNA-1
chr8_1	CDS	38870657	38870702	38870657	ID=Msa1192880-mRNA-1:cds;Parent=Msa1192880-mRNA-1
chr8_1	CDS	38870820	38870982	38870820	ID=Msa1192880-mRNA-1:cds;Parent=Msa1192880-mRNA-1
chr8_1	CDS	38872450	38872576	38872450	ID=Msa1192880-mRNA-1:cds;Parent=Msa1192880-mRNA-1
chr8_1	CDS	38874223	38874345	38874223	ID=Msa1192880-mRNA-1:cds;Parent=Msa1192880-mRNA-1
chr8_1	three_prime_UTR	38874346	38874852	38874346	ID=Msa1192880-mRNA-1:three_prime_utr;Parent=Msa1192880-mRNA-1

Gene Sequence

>Msa1192880

ATGGAGCTATTCCCAGCACAACTAGATTTATCATTGCAAATCAGTCTTCCAAACAGCAAACAAACATCAAGTTGGAGGAGAAATACAGATGATCAAGAAGAGTTGGATGATTTAGGATTTTGGAAAAGAGCTTTGGAGTCAAGAACAGAAGCAAATCATACCTTTGACCCTTCTCTTTCCAATCTAAGGGCTCCTTCTTCTTCAAACCTCTACAATCTCATACCTAACCCTTTTCAAAACACTAATAATTCCAACAATAACTCTTTTCAACCATTTCATCAAAACCAAAACAATTACCAAAGCTTAAGTGAAGAGTTAGGGTTTCTCAAACCTATAAGAGGAATTCCAGTGTATCATCAAAACCCTAATCCTTCTATTGCTTTATTTTCTCAACCACAACCACCTTTTGATGCTTCTGCTTCAAGTTCATCAACAGCTTTTCATTCTCATACTTCGATGAGATCAAAGTTGTTGCCGAGGTTTCCTTCAAAGCGTAGCGTGAGAGCTCCGAGGATGCGTTGGACTACCACTCTTCATAATCGCTTTGTTCATGCTGTTGAACTTTTGGGTGGCCATGAAAGAGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTAAAGGATCTAACCTTATCACATGTTAAATCTCATTTGCAGATGTACCGGACGGTGAAAATTACAGATAGACCACCAGCATCATCAGGTCAATCTGATATGTATGACAATGGTTCATCTGGAGATACTTCTGAAGACTTCATGTTTGACATAAATTCTTCAACAAGGTCTAATGATCTGCCAGTTAAGTTGGATGCAGAAATCCCTAATCAAGATAAAGAAAAACATAGCATTTGGAGCAAATCTTCCAGTATGCTTTTTGTATACATGGCTTCCACTAATGGGAAATATTCTCTCCATGTGTTTGATAGTAACAGGGAAGCTTGGTTGCATGGTAAGCCAAAGGTCCATCCTGTTGGAAATGTGTCTTCTCTTGAGGAAATGGATCCAAAGTGTGTAAGCAACGAAAGATATTCCTCAGATGGAAGCTCTTCCTCAAACATTTCGGGAACAAGCTTAAAGAATCCAAATTTGGAATTCACATTAGGCAACTCAGTTTGA

Protein sequence

>Msa1192880

MELFPAQLDLSLQISLPNSKQTSSWRRNTDDQEELDDLGFWKRALESRTEANHTFDPSLSNLRAPSSSNLYNLIPNPFQNTNNSNNNSFQPFHQNQNNYQSLSEELGFLKPIRGIPVYHQNPNPSIALFSQPQPPFDASASSSSTAFHSHTSMRSKLLPRFPSKRSVRAPRMRWTTTLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLSHVKSHLQMYRTVKITDRPPASSGQSDMYDNGSSGDTSEDFMFDINSSTRSNDLPVKLDAEIPNQDKEKHSIWSKSSSMLFVYMASTNGKYSLHVFDSNREAWLHGKPKVHPVGNVSSLEEMDPKCVSNERYSSDGSSSSNISGTSLKNPNLEFTLGNSV*