AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1015360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1015360 MtrunA17_Chr7g0228611 95.922 515 14 2 1 508 1 515 0.0 997
Msa1015360 MtrunA17_Chr6g0458971 78.378 518 102 4 1 508 1 518 0.0 828
Msa1015360 MtrunA17_Chr7g0222441 51.446 484 208 5 29 492 107 583 2.71e-163 476
Msa1015360 MtrunA17_Chr8g0341321 51.125 489 206 8 27 492 92 570 1.22e-159 466
Msa1015360 MtrunA17_Chr7g0271531 41.273 487 260 8 29 504 128 599 1.95e-118 361
Msa1015360 MtrunA17_Chr8g0358431 60.000 185 64 1 172 346 21 205 3.86e-71 225
Msa1015360 MtrunA17_Chr7g0228591 65.608 189 29 4 26 207 7 166 8.84e-67 218
Msa1015360 MtrunA17_Chr7g0228591 67.241 58 11 1 320 377 167 216 2.69e-16 80.1
Msa1015360 MtrunA17_Chr8g0356771 57.746 142 46 1 171 298 20 161 2.48e-51 172
Msa1015360 MtrunA17_Chr8g0356781 45.283 212 90 4 306 492 3 213 6.78e-48 165
Msa1015360 MtrunA17_Chr8g0356701 54.717 106 38 1 269 364 1 106 4.09e-30 114
Msa1015360 MtrunA17_Chr8g0358411 47.674 86 44 1 407 492 1 85 6.10e-17 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1015360 AT5G40760.2 79.344 518 94 5 1 508 1 515 0.0 843
Msa1015360 AT5G40760.1 79.344 518 94 5 1 508 1 515 0.0 843
Msa1015360 AT3G27300.4 77.563 517 106 4 1 508 72 587 0.0 827
Msa1015360 AT3G27300.5 77.563 517 106 4 1 508 55 570 0.0 827
Msa1015360 AT3G27300.1 77.563 517 106 4 1 508 1 516 0.0 827
Msa1015360 AT3G27300.3 77.563 517 106 4 1 508 1 516 0.0 827
Msa1015360 AT3G27300.2 77.563 517 106 4 1 508 1 516 0.0 827
Msa1015360 AT5G13110.1 51.860 484 205 6 29 492 109 584 4.17e-162 473
Msa1015360 AT1G24280.1 51.540 487 208 6 26 492 109 587 1.71e-161 471
Msa1015360 AT5G35790.1 51.446 484 207 6 29 492 90 565 7.80e-161 469
Msa1015360 AT1G09420.1 39.087 504 271 9 13 494 130 619 1.64e-112 347
Msa1015360 AT1G09420.2 38.132 514 272 10 13 494 130 629 1.35e-108 337

Find 133 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTGCCTTCCTAGAATTT+AGG 0.156148 7_1:+27681882 None:intergenic
CCTTGTATTATTATGAAATT+TGG 0.192222 7_1:+27680186 None:intergenic
ATCGGTTCTTCTTGCCTCTT+TGG 0.218581 7_1:-27683687 Msa1015360:CDS
TTCAAACACACGGTTATATA+TGG 0.231079 7_1:-27680232 Msa1015360:CDS
ACAACTTCATCATCTCTAAT+AGG 0.232979 7_1:+27682387 None:intergenic
TGAAATTTGGTCACTCTATA+AGG 0.248534 7_1:+27680199 None:intergenic
ATTGTTGTGCTTGGTGCTTC+TGG 0.249489 7_1:-27685364 Msa1015360:CDS
CTCTGCCTTCCTAGAATTTA+GGG 0.250063 7_1:+27681883 None:intergenic
TGTTCGCAGAGACGAATTAA+AGG 0.261720 7_1:-27680468 Msa1015360:intron
AGAGATGATGAAGTTGTTCT+TGG 0.283928 7_1:-27682381 Msa1015360:CDS
TTTCTCCTATTAGCTGATCT+TGG 0.296918 7_1:-27683962 Msa1015360:CDS
TGCAGGAAAAGTCTTCTTCT+TGG 0.302761 7_1:+27685333 None:intergenic
ATAGTATTTAGAGAGGATTT+TGG 0.310785 7_1:-27683398 Msa1015360:CDS
ATTAGACGCTCGTAAGCTTC+TGG 0.318320 7_1:+27681009 None:intergenic
GACAGTTTGTGTAATAGATT+TGG 0.324699 7_1:-27680059 Msa1015360:three_prime_UTR
GATACATCATCTAACTGTTT+AGG 0.324784 7_1:+27684503 None:intergenic
AATAAATGGTGTTATGGAAT+TGG 0.336391 7_1:-27685946 None:intergenic
ATACAAGGATTAGGATTATC+AGG 0.338722 7_1:-27680171 Msa1015360:three_prime_UTR
CAGGGAAGGCCCTAAATTCT+AGG 0.343978 7_1:-27681892 Msa1015360:CDS
AATGGAAGGTGATAGAGTTT+TGG 0.345426 7_1:-27679993 Msa1015360:three_prime_UTR
TTCTAGGAAGGCAGAGATTC+GGG 0.349021 7_1:-27681876 Msa1015360:CDS
TTCATAATAATACAAGGATT+AGG 0.356569 7_1:-27680180 Msa1015360:three_prime_UTR
TACCTGGTTTGGTTTGGTTT+GGG 0.356708 7_1:+27685772 None:intergenic
ATTATTCAGAAATCTAATAT+TGG 0.357124 7_1:-27683989 Msa1015360:intron
GTACCTGGTTTGGTTTGGTT+TGG 0.382522 7_1:+27685771 None:intergenic
GAATAGTAGTTGCAAAAGTC+GGG 0.384412 7_1:+27682307 None:intergenic
AATATGTTCTACAGAATTAG+AGG 0.395958 7_1:-27680506 Msa1015360:intron
TGGCTCTGAATGAATATAAA+CGG 0.396610 7_1:-27680039 Msa1015360:three_prime_UTR
AAGAGTTAGTTTAAAGAATG+AGG 0.402540 7_1:+27685812 None:intergenic
TTAGGAGAAGCACCTTTCTC+TGG 0.403884 7_1:+27684521 None:intergenic
CATTCAAAACCATCTGTTGC+AGG 0.406222 7_1:-27683088 Msa1015360:intron
CAACTTCATCATCTCTAATA+GGG 0.410590 7_1:+27682388 None:intergenic
TGCTCAGGCTTGAGAGAAAC+GGG 0.411666 7_1:+27682728 None:intergenic
AGTGAACTAGACTTGTCATA+TGG 0.414484 7_1:-27681057 Msa1015360:CDS
TTGTTTCTTGTTAGGCATCA+TGG 0.414804 7_1:-27680373 Msa1015360:intron
AACTTAACACGTACCCATAT+TGG 0.417588 7_1:+27683348 None:intergenic
GTTCAATTCAAGGATGTTCC+TGG 0.418935 7_1:-27681854 Msa1015360:intron
GGTTCTTTGCTTGATTGCTA+TGG 0.422658 7_1:-27682756 Msa1015360:CDS
AGAGATTCGGGTTCAATTCA+AGG 0.426463 7_1:-27681864 Msa1015360:CDS
AGTTGTGTGTGTACCTGGTT+TGG 0.426766 7_1:+27685761 None:intergenic
TAGATCAGAGTAGAAGAAGA+TGG 0.431799 7_1:-27685476 Msa1015360:exon
TCTGCAGGACCTCTACTTCC+CGG 0.432492 7_1:+27680287 None:intergenic
ATTCTAGGAAGGCAGAGATT+CGG 0.433940 7_1:-27681877 Msa1015360:CDS
GGCTCTGAATGAATATAAAC+GGG 0.439844 7_1:-27680038 Msa1015360:three_prime_UTR
TGTGTGTACCTGGTTTGGTT+TGG 0.441952 7_1:+27685766 None:intergenic
GCAGGTCAAGCAACCTGGAC+TGG 0.444296 7_1:-27681097 Msa1015360:intron
CCTCTACTTCCCGGCTTGTA+AGG 0.444570 7_1:+27680296 None:intergenic
TTATCGTATTGATCACTACT+TGG 0.446760 7_1:-27683837 Msa1015360:CDS
GTTTAAAGAATGAGGAAAAG+TGG 0.447006 7_1:+27685820 None:intergenic
GCAAGAGAGGTACTTGAAAC+TGG 0.447171 7_1:-27685397 Msa1015360:CDS
TTCTCATCTCGAATGTGCTC+AGG 0.450398 7_1:+27682713 None:intergenic
AAATAGCTTCTGAAGGTTGT+AGG 0.452237 7_1:+27681426 None:intergenic
TTTAAAGAATGAGGAAAAGT+GGG 0.455854 7_1:+27685821 None:intergenic
ATCCACCAAGATCAGCTAAT+AGG 0.461798 7_1:+27683957 None:intergenic
AAGCCATCCTCAGAATCATA+AGG 0.462119 7_1:+27684335 None:intergenic
TGGTTTGGTTTGGTTTGGGT+TGG 0.463494 7_1:+27685776 None:intergenic
CCAAATTTCATAATAATACA+AGG 0.466716 7_1:-27680186 Msa1015360:three_prime_UTR
GTTCCTTTCATTGTGAAAGC+AGG 0.468803 7_1:-27681911 Msa1015360:CDS
TTTGAATCGTCCGGTACAGT+TGG 0.469031 7_1:+27682333 None:intergenic
ACACTCTCTATTGTTGTGCT+TGG 0.470207 7_1:-27685373 Msa1015360:CDS
CTTCCCGGCTTGTAAGGAAC+CGG 0.470765 7_1:+27680302 None:intergenic
CTCCTATTAGCTGATCTTGG+TGG 0.473413 7_1:-27683959 Msa1015360:CDS
TGATCAATACGATAAATTTG+TGG 0.480785 7_1:+27683845 None:intergenic
TCAAGTACCTCTCTTGCTAC+AGG 0.484307 7_1:+27685403 None:intergenic
TTCCCTGCTTTCACAATGAA+AGG 0.485117 7_1:+27681908 None:intergenic
GTTGTTCTTGGACAATATGA+AGG 0.485435 7_1:-27682369 Msa1015360:CDS
TGCATGCAGGTCAAGCAACC+TGG 0.485610 7_1:-27681102 Msa1015360:intron
TCATATGGGCAACGATATCA+AGG 0.488911 7_1:-27681042 Msa1015360:CDS
TGCGGATACACAATGTAAGA+TGG 0.490222 7_1:-27682284 Msa1015360:CDS
AGCTATCTTGTTCCAGAGAA+AGG 0.490597 7_1:-27684533 Msa1015360:CDS
TTGAATCGTCCGGTACAGTT+GGG 0.494570 7_1:+27682334 None:intergenic
GCACATTGTCAATGTGGTTG+TGG 0.497347 7_1:+27683662 None:intergenic
GTGCTCAGGCTTGAGAGAAA+CGG 0.503292 7_1:+27682727 None:intergenic
GAAGAACTCAGTACTCAAAT+CGG 0.505760 7_1:-27683884 Msa1015360:CDS
TTGTTGAGAAACCCTTTGGT+AGG 0.509647 7_1:-27683922 Msa1015360:CDS
AGAATAGTAGTTGCAAAAGT+CGG 0.509748 7_1:+27682306 None:intergenic
ACTGCGGACATTTCCAGTCC+AGG 0.511872 7_1:+27681084 None:intergenic
AAGCCGGTTCCTTACAAGCC+GGG 0.516977 7_1:-27680305 Msa1015360:CDS
GTGAACTAGACTTGTCATAT+GGG 0.517809 7_1:-27681056 Msa1015360:CDS
GGCCCTTATGATTCTGAGGA+TGG 0.521011 7_1:-27684338 Msa1015360:CDS
GTCGGGGTGTTTGAATCGTC+CGG 0.524330 7_1:+27682324 None:intergenic
AATAACTCATCTGCTTCTGC+AGG 0.524471 7_1:+27680272 None:intergenic
TTGACTAATAAGAAAGGAGT+TGG 0.526399 7_1:-27685866 Msa1015360:five_prime_UTR
AACCCAAACCAAACCAAACC+AGG 0.527398 7_1:-27685774 Msa1015360:intron
TGATAGAGGGGAGTTGAAGC+CGG 0.534075 7_1:-27680321 Msa1015360:CDS
TATCGTATTGATCACTACTT+GGG 0.536785 7_1:-27683836 Msa1015360:CDS
AGATCAGAGTAGAAGAAGAT+GGG 0.537240 7_1:-27685475 Msa1015360:exon
AGCTATTTACATGAAGCTTA+CGG 0.538172 7_1:-27681411 Msa1015360:intron
AGCCATCCTCAGAATCATAA+GGG 0.540998 7_1:+27684336 None:intergenic
TTATAGGTTAAATATGTAAG+TGG 0.542299 7_1:-27684359 Msa1015360:intron
TTTCATTGTGAAAGCAGGGA+AGG 0.547491 7_1:-27681906 Msa1015360:CDS
TGTTGAGAAACCCTTTGGTA+GGG 0.549697 7_1:-27683921 Msa1015360:CDS
CAACAATTGACTAATAAGAA+AGG 0.549889 7_1:-27685872 Msa1015360:five_prime_UTR
CAGAGATGACCCAACTGTAC+CGG 0.550562 7_1:-27682343 Msa1015360:CDS
GTTGTTGTTGAGAAACCCTT+TGG 0.551998 7_1:-27683926 Msa1015360:CDS
TTCCTTTCATTGTGAAAGCA+GGG 0.552641 7_1:-27681910 Msa1015360:CDS
TTCATGTAAATAGCTTCTGA+AGG 0.553309 7_1:+27681419 None:intergenic
AGAAGATGGGAACAAATGAA+TGG 0.557625 7_1:-27685462 Msa1015360:exon
GATTGCAGATCCCTACCAAA+GGG 0.563774 7_1:+27683911 None:intergenic
GAAGCCGGTTCCTTACAAGC+CGG 0.575682 7_1:-27680306 Msa1015360:CDS
CCTTACAAGCCGGGAAGTAG+AGG 0.577449 7_1:-27680296 Msa1015360:CDS
TATTAGCTGATCTTGGTGGA+TGG 0.579428 7_1:-27683955 Msa1015360:CDS
CAACCACATTGACAATGTGC+AGG 0.580745 7_1:-27683659 Msa1015360:intron
GCGGATACACAATGTAAGAT+GGG 0.581543 7_1:-27682283 Msa1015360:CDS
TTTACACAAAATTGATAGAG+GGG 0.588084 7_1:-27680333 Msa1015360:CDS
ATTTGGTCACTCTATAAGGT+AGG 0.594218 7_1:+27680203 None:intergenic
CTGGCAGATAGTATTTAGAG+AGG 0.596768 7_1:-27683405 Msa1015360:intron
AAGGCCTTACCTGCAACAGA+TGG 0.596779 7_1:+27683079 None:intergenic
TGAATCTCCTGTAGCAAGAG+AGG 0.597747 7_1:-27685410 Msa1015360:CDS
TATTGATCACTACTTGGGAA+AGG 0.603355 7_1:-27683831 Msa1015360:CDS
GTAGAAAGAAGAGATAGCAT+AGG 0.611814 7_1:-27685436 Msa1015360:CDS
TGGTCACTCTATAAGGTAGG+AGG 0.612519 7_1:+27680206 None:intergenic
AATTGAGAAACAAATTGCGT+AGG 0.617863 7_1:-27684768 Msa1015360:intron
GAAGGCCCTAAATTCTAGGA+AGG 0.620499 7_1:-27681888 Msa1015360:CDS
ACGCTCGTAAGCTTCTGGAA+TGG 0.626051 7_1:+27681014 None:intergenic
ATACACAATGTAAGATGGGA+AGG 0.632030 7_1:-27682279 Msa1015360:intron
AAAATGTGAACTTCATCAGG+TGG 0.641225 7_1:+27684823 None:intergenic
CAAACAGATGGATACACTGA+AGG 0.643595 7_1:+27684221 None:intergenic
GTCTAGTTCACTTTGAACTG+CGG 0.651521 7_1:+27681068 None:intergenic
AGATTGCAGATCCCTACCAA+AGG 0.651614 7_1:+27683910 None:intergenic
ACAGATGGATACACTGAAGG+AGG 0.651720 7_1:+27684224 None:intergenic
ATAGTAAAGAGGGTTCATCT+CGG 0.652229 7_1:-27684268 Msa1015360:CDS
CATTCGAGATGAGAAAGTGA+AGG 0.654543 7_1:-27682705 Msa1015360:intron
ATGTGGTTGTGGTTCCAAAG+AGG 0.659117 7_1:+27683673 None:intergenic
GCTGGATATGTTCAAACACA+CGG 0.666638 7_1:-27680242 Msa1015360:CDS
TTTGGAACTGATGGTCGTGG+TGG 0.667951 7_1:-27683380 Msa1015360:CDS
AAGTGGCCCTTATGATTCTG+AGG 0.684602 7_1:-27684342 Msa1015360:CDS
AATAGTAGTTGCAAAAGTCG+GGG 0.685204 7_1:+27682308 None:intergenic
CATATGGGCAACGATATCAA+GGG 0.685875 7_1:-27681041 Msa1015360:CDS
AAAGGAATTAGTGCAAAACA+TGG 0.686732 7_1:-27683813 Msa1015360:intron
TAGCTTCTGAAGGTTGTAGG+CGG 0.696873 7_1:+27681429 None:intergenic
TCACCTGCACATTGTCAATG+TGG 0.705326 7_1:+27683656 None:intergenic
GTAAAGAGGGTTCATCTCGG+AGG 0.714169 7_1:-27684265 Msa1015360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAATATTGATTGTTTTT+TGG - chr7_1:27681772-27681791 Msa1015360:intron 10.0%
!!! ATTTTATAATGAAATAGATT+TGG - chr7_1:27682862-27682881 Msa1015360:intron 10.0%
!!! AAATATTTATGTTATGTTTT+GGG + chr7_1:27684364-27684383 None:intergenic 10.0%
!!! GAGTATTGTTTTTTATAATT+AGG - chr7_1:27680974-27680993 Msa1015360:intron 15.0%
!! ATATTTGAAAAATAGTAAAG+AGG - chr7_1:27681638-27681657 Msa1015360:intron 15.0%
!! TATTTGAAAAATAGTAAAGA+GGG - chr7_1:27681639-27681658 Msa1015360:intron 15.0%
!! ATTATTCAGAAATCTAATAT+TGG - chr7_1:27681928-27681947 Msa1015360:intron 15.0%
!! TCTATTTCATTATAAAATCA+AGG + chr7_1:27682860-27682879 None:intergenic 15.0%
!!! ATATTTATGTACGTTTTTTA+GGG + chr7_1:27682939-27682958 None:intergenic 15.0%
!!! GATAAAGTTTTAAAATATTC+AGG + chr7_1:27683014-27683033 None:intergenic 15.0%
!! ATCAATCTTGAAATTATAAA+TGG - chr7_1:27684188-27684207 Msa1015360:intron 15.0%
!!! AATATTTATGTTATGTTTTG+GGG + chr7_1:27684363-27684382 None:intergenic 15.0%
!!! CAAATATTTATGTTATGTTT+TGG + chr7_1:27684365-27684384 None:intergenic 15.0%
!! TATGTTATCAAGATAATATA+GGG + chr7_1:27684391-27684410 None:intergenic 15.0%
!! ATATGTTATCAAGATAATAT+AGG + chr7_1:27684392-27684411 None:intergenic 15.0%
!!! AACTTAATGTTAACAATTTT+AGG - chr7_1:27684435-27684454 Msa1015360:intron 15.0%
!!! TTTTTCCTTATTCATATTTA+TGG - chr7_1:27684948-27684967 Msa1015360:intron 15.0%
!!! ATAGTTTTTAAGACTAAAAT+TGG + chr7_1:27685091-27685110 None:intergenic 15.0%
!! GTAAATTATCAATTTAATCA+GGG + chr7_1:27685315-27685334 None:intergenic 15.0%
!! AGTAAATTATCAATTTAATC+AGG + chr7_1:27685316-27685335 None:intergenic 15.0%
!!! GATTGATGATATGATTAAAA+AGG - chr7_1:27680238-27680257 Msa1015360:CDS 20.0%
!!! ACTTTTTCACTTATATAAAC+AGG - chr7_1:27680606-27680625 Msa1015360:intron 20.0%
!! CAAATAAAATATAGAACTGA+AGG - chr7_1:27680859-27680878 Msa1015360:intron 20.0%
!!! ATGTCTTGTAAATTTTGATT+GGG - chr7_1:27681500-27681519 Msa1015360:intron 20.0%
!! TTATAGGTTAAATATGTAAG+TGG - chr7_1:27681558-27681577 Msa1015360:intron 20.0%
!! TAGATTTCTGAATAATAAAC+AGG + chr7_1:27681924-27681943 None:intergenic 20.0%
!! GGTACTAAATGAATATATAA+TGG - chr7_1:27682125-27682144 Msa1015360:intron 20.0%
!!! AATTCTAAATTTTGTGAACT+CGG - chr7_1:27682294-27682313 Msa1015360:CDS 20.0%
!! TTATTTAGACTTATGAGATA+TGG - chr7_1:27682324-27682343 Msa1015360:CDS 20.0%
!! ATTCATGGTCATTAAAAAAA+AGG + chr7_1:27682392-27682411 None:intergenic 20.0%
!!! TCACTAGTAATTCTAATTTT+AGG - chr7_1:27682614-27682633 Msa1015360:intron 20.0%
!! TAAGCAGAAAAAAGTAAAAT+TGG + chr7_1:27682675-27682694 None:intergenic 20.0%
!!! TTTTTTCTGCTTAAATTGTA+AGG - chr7_1:27682682-27682701 Msa1015360:intron 20.0%
!!! CATATTTATGTACGTTTTTT+AGG + chr7_1:27682940-27682959 None:intergenic 20.0%
!!! TGTATTTGATCTTTTTATAG+TGG + chr7_1:27683054-27683073 None:intergenic 20.0%
!!! TCTTTTTCATTTCAATTTTC+TGG - chr7_1:27683239-27683258 Msa1015360:intron 20.0%
!! TCAAAGCTAAGTAAAAATAA+AGG + chr7_1:27683432-27683451 None:intergenic 20.0%
!!! TCTTTAAGTTATAACGTTTT+CGG - chr7_1:27683470-27683489 Msa1015360:intron 20.0%
!! ATAAGCCATAAATATGAATA+AGG + chr7_1:27684956-27684975 None:intergenic 20.0%
!!! TTTTTAAGACTAAAATTGGT+GGG + chr7_1:27685087-27685106 None:intergenic 20.0%
!! TAACAAGAAACAAAAGAATA+TGG + chr7_1:27685537-27685556 None:intergenic 20.0%
!!! ATATTCTTTTGTTTCTTGTT+AGG - chr7_1:27685536-27685555 Msa1015360:intron 20.0%
!!! TTTTACACAAAATTGATAGA+GGG - chr7_1:27685583-27685602 Msa1015360:intron 20.0%
!! CCTTGTATTATTATGAAATT+TGG + chr7_1:27685734-27685753 None:intergenic 20.0%
!! CCAAATTTCATAATAATACA+AGG - chr7_1:27685731-27685750 Msa1015360:intron 20.0%
!! TTCATAATAATACAAGGATT+AGG - chr7_1:27685737-27685756 Msa1015360:intron 20.0%
!!! GTTTCTTTTTGTTTTATGAA+TGG - chr7_1:27685906-27685925 Msa1015360:five_prime_UTR 20.0%
! CAACAATTGACTAATAAGAA+AGG - chr7_1:27680045-27680064 Msa1015360:three_prime_UTR 25.0%
! TTTAAAGAATGAGGAAAAGT+GGG + chr7_1:27680099-27680118 None:intergenic 25.0%
!! AAGAGTTAGTTTAAAGAATG+AGG + chr7_1:27680108-27680127 None:intergenic 25.0%
! ATCATGTTTGAAAACTGATT+AGG + chr7_1:27680221-27680240 None:intergenic 25.0%
!! TTATATAAGTGAAAAAGTGC+AGG + chr7_1:27680604-27680623 None:intergenic 25.0%
! AATTAAAAAGTCCAATCGTT+CGG - chr7_1:27680724-27680743 Msa1015360:intron 25.0%
! ATTTGTCTTAATTCTCTAGT+TGG + chr7_1:27680844-27680863 None:intergenic 25.0%
! TCTGAACTATGTTAAGTTAA+GGG + chr7_1:27680885-27680904 None:intergenic 25.0%
! TTCTGAACTATGTTAAGTTA+AGG + chr7_1:27680886-27680905 None:intergenic 25.0%
! GCTTAATGTTAGTTCATTAA+GGG + chr7_1:27681051-27681070 None:intergenic 25.0%
!!! GTTTGTGATTCTAAAACTTA+TGG - chr7_1:27681351-27681370 Msa1015360:intron 25.0%
!! TGTATCGAAGTTTTTACAAT+TGG - chr7_1:27681431-27681450 Msa1015360:CDS 25.0%
! AGAAATAGAACATCGATAAA+TGG + chr7_1:27681477-27681496 None:intergenic 25.0%
!!! GATGTCTTGTAAATTTTGAT+TGG - chr7_1:27681499-27681518 Msa1015360:intron 25.0%
! GAAACAGAGAATGATTATTT+GGG + chr7_1:27681526-27681545 None:intergenic 25.0%
! ATGTACGATGTTATGATTTA+TGG - chr7_1:27681749-27681768 Msa1015360:intron 25.0%
!! CTAAGTTCTTTTACTTTCAA+TGG - chr7_1:27681896-27681915 Msa1015360:CDS 25.0%
! TGATCAATACGATAAATTTG+TGG + chr7_1:27682075-27682094 None:intergenic 25.0%
! GAATATAAGCCATATTAAGA+GGG + chr7_1:27682187-27682206 None:intergenic 25.0%
! ATATGCCACAAATTTAAACT+TGG - chr7_1:27682472-27682491 Msa1015360:intron 25.0%
! TATGCCACAAATTTAAACTT+GGG - chr7_1:27682473-27682492 Msa1015360:intron 25.0%
! AAAACCCAAGTTTAAATTTG+TGG + chr7_1:27682480-27682499 None:intergenic 25.0%
!! ACAAATTTAAACTTGGGTTT+TGG - chr7_1:27682479-27682498 Msa1015360:intron 25.0%
!! ATAGTATTTAGAGAGGATTT+TGG - chr7_1:27682519-27682538 Msa1015360:intron 25.0%
!!! TTTTAAAATATTCAGGAGAC+TGG + chr7_1:27683007-27683026 None:intergenic 25.0%
!! CATATTAGTCTAATAAGTGT+CGG + chr7_1:27683110-27683129 None:intergenic 25.0%
! ACGTTATAACTTAAAGATGA+AGG + chr7_1:27683467-27683486 None:intergenic 25.0%
!!! CTTTAAGTTATAACGTTTTC+GGG - chr7_1:27683471-27683490 Msa1015360:intron 25.0%
! GAAATATAGAAGAAACTGAA+TGG - chr7_1:27683815-27683834 Msa1015360:CDS 25.0%
! CAGAAAATGATGAGAAAAAA+AGG + chr7_1:27683941-27683960 None:intergenic 25.0%
! GAAAAAACCAATATTGCATA+AGG + chr7_1:27684122-27684141 None:intergenic 25.0%
! AGATAGATATATACTTGTTC+CGG - chr7_1:27684215-27684234 Msa1015360:intron 25.0%
! AATATTCTATCGTTAATCTC+CGG + chr7_1:27684237-27684256 None:intergenic 25.0%
!!! TAATATTTTGAAGAGAACAG+AGG + chr7_1:27684416-27684435 None:intergenic 25.0%
!!! ACAATTTTAGGTAAAAAGCA+AGG - chr7_1:27684447-27684466 Msa1015360:intron 25.0%
!!! CAATTTTAGGTAAAAAGCAA+GGG - chr7_1:27684448-27684467 Msa1015360:intron 25.0%
!! ATGAAATTACTTTGCTGTAT+AGG - chr7_1:27684647-27684666 Msa1015360:intron 25.0%
!!! GGATGTTTGATTTTCATATA+CGG - chr7_1:27684668-27684687 Msa1015360:intron 25.0%
!!! GATGTTTGATTTTCATATAC+GGG - chr7_1:27684669-27684688 Msa1015360:intron 25.0%
! CATAAGCTCATGTTTATATA+TGG + chr7_1:27685020-27685039 None:intergenic 25.0%
!!! GTTTTTAAGACTAAAATTGG+TGG + chr7_1:27685088-27685107 None:intergenic 25.0%
! TGAAATGTAACAATGAGAAT+TGG - chr7_1:27685388-27685407 Msa1015360:CDS 25.0%
! AATATGTTCTACAGAATTAG+AGG - chr7_1:27685411-27685430 Msa1015360:CDS 25.0%
!! CTATCAATTTTGTGTAAAAG+TGG + chr7_1:27685582-27685601 None:intergenic 25.0%
!! CTTTTACACAAAATTGATAG+AGG - chr7_1:27685582-27685601 Msa1015360:intron 25.0%
! TTTACACAAAATTGATAGAG+GGG - chr7_1:27685584-27685603 Msa1015360:intron 25.0%
!! GTTATAATCTCTCTCATTTT+GGG - chr7_1:27685806-27685825 Msa1015360:five_prime_UTR 25.0%
!! TTATAATCTCTCTCATTTTG+GGG - chr7_1:27685807-27685826 Msa1015360:five_prime_UTR 25.0%
!!! CTTTTTGTTTTATGAATGGA+AGG - chr7_1:27685910-27685929 Msa1015360:five_prime_UTR 25.0%
TTGACTAATAAGAAAGGAGT+TGG - chr7_1:27680051-27680070 Msa1015360:three_prime_UTR 30.0%
GTTTAAAGAATGAGGAAAAG+TGG + chr7_1:27680100-27680119 None:intergenic 30.0%
ATTTACCACTTCATGTCAAA+AGG - chr7_1:27680298-27680317 Msa1015360:CDS 30.0%
TTTACCACTTCATGTCAAAA+GGG - chr7_1:27680299-27680318 Msa1015360:CDS 30.0%
CATGATCATAAGAAAGAATG+TGG + chr7_1:27680360-27680379 None:intergenic 30.0%
ATTAAAAAGTCCAATCGTTC+GGG - chr7_1:27680725-27680744 Msa1015360:intron 30.0%
CTTAATTCTCTAGTTGGAAA+GGG + chr7_1:27680838-27680857 None:intergenic 30.0%
TCTTAATTCTCTAGTTGGAA+AGG + chr7_1:27680839-27680858 None:intergenic 30.0%
CGCTTAATGTTAGTTCATTA+AGG + chr7_1:27681052-27681071 None:intergenic 30.0%
AATTGAGAAACAAATTGCGT+AGG - chr7_1:27681149-27681168 Msa1015360:intron 30.0%
! GGTGAGAATATCATGATTTT+TGG - chr7_1:27681170-27681189 Msa1015360:intron 30.0%
GATACATCATCTAACTGTTT+AGG + chr7_1:27681417-27681436 None:intergenic 30.0%
GGAAACAGAGAATGATTATT+TGG + chr7_1:27681527-27681546 None:intergenic 30.0%
TAACCTATAAGCAAGAGAAA+GGG + chr7_1:27681548-27681567 None:intergenic 30.0%
TTAACCTATAAGCAAGAGAA+AGG + chr7_1:27681549-27681568 None:intergenic 30.0%
! TTATCGTATTGATCACTACT+TGG - chr7_1:27682080-27682099 Msa1015360:intron 30.0%
! TATCGTATTGATCACTACTT+GGG - chr7_1:27682081-27682100 Msa1015360:intron 30.0%
AAAGGAATTAGTGCAAAACA+TGG - chr7_1:27682104-27682123 Msa1015360:intron 30.0%
CGAATATAAGCCATATTAAG+AGG + chr7_1:27682188-27682207 None:intergenic 30.0%
! TAGTACTTCGTTTTGCAAAT+CGG - chr7_1:27682212-27682231 Msa1015360:intron 30.0%
AAAGATGCTGACAGATATAA+TGG + chr7_1:27682366-27682385 None:intergenic 30.0%
! CGCACTGATAAAAAAATTCA+TGG + chr7_1:27682407-27682426 None:intergenic 30.0%
!! GCATATCAACTTTGATAATG+TGG + chr7_1:27682458-27682477 None:intergenic 30.0%
!!! GTGGATATTTTGACCAATAT+GGG - chr7_1:27682556-27682575 Msa1015360:intron 30.0%
!!! GATGGTTTTGAATGATATCT+CGG + chr7_1:27682823-27682842 None:intergenic 30.0%
CGTACATAAATATGTTAACG+AGG - chr7_1:27682946-27682965 Msa1015360:intron 30.0%
! TATAAACCATCTGCATTGAT+AGG + chr7_1:27683081-27683100 None:intergenic 30.0%
!!! TTTTTACTTAGCTTTGAGAC+AGG - chr7_1:27683435-27683454 Msa1015360:intron 30.0%
CAACTTCATCATCTCTAATA+GGG + chr7_1:27683532-27683551 None:intergenic 30.0%
ACAACTTCATCATCTCTAAT+AGG + chr7_1:27683533-27683552 None:intergenic 30.0%
AGAATAGTAGTTGCAAAAGT+CGG + chr7_1:27683614-27683633 None:intergenic 30.0%
TAACATGTTGACACTGATAA+TGG - chr7_1:27683789-27683808 Msa1015360:intron 30.0%
!!! ACCAATTACTTTTTTGCATC+AGG - chr7_1:27683982-27684001 Msa1015360:CDS 30.0%
ACCTGATGCAAAAAAGTAAT+TGG + chr7_1:27683986-27684005 None:intergenic 30.0%
TGCTATACCTTATGCAATAT+TGG - chr7_1:27684112-27684131 Msa1015360:intron 30.0%
ATATTAACGAATTTGTCCAG+TGG - chr7_1:27684252-27684271 Msa1015360:CDS 30.0%
TATTAACGAATTTGTCCAGT+GGG - chr7_1:27684253-27684272 Msa1015360:CDS 30.0%
TTCATGTAAATAGCTTCTGA+AGG + chr7_1:27684501-27684520 None:intergenic 30.0%
AGCTATTTACATGAAGCTTA+CGG - chr7_1:27684506-27684525 Msa1015360:CDS 30.0%
CATATATACAACGCTATAAG+AGG + chr7_1:27684593-27684612 None:intergenic 30.0%
TTATTCGCTAATACACTGTT+TGG - chr7_1:27684696-27684715 Msa1015360:intron 30.0%
ATATGGACTTGAGTTTATGA+TGG + chr7_1:27685003-27685022 None:intergenic 30.0%
TCTTGTTACTCAATCTAGAA+AGG - chr7_1:27685182-27685201 Msa1015360:intron 30.0%
CTTGTTACTCAATCTAGAAA+GGG - chr7_1:27685183-27685202 Msa1015360:intron 30.0%
GATGAGTTATTAGAAAAAGC+TGG - chr7_1:27685657-27685676 Msa1015360:intron 30.0%
TTCAAACACACGGTTATATA+TGG - chr7_1:27685685-27685704 Msa1015360:intron 30.0%
TGAAATTTGGTCACTCTATA+AGG + chr7_1:27685721-27685740 None:intergenic 30.0%
ATACAAGGATTAGGATTATC+AGG - chr7_1:27685746-27685765 Msa1015360:intron 30.0%
! CGTTATAATCTCTCTCATTT+TGG - chr7_1:27685805-27685824 Msa1015360:five_prime_UTR 30.0%
GACAGTTTGTGTAATAGATT+TGG - chr7_1:27685858-27685877 Msa1015360:five_prime_UTR 30.0%
!! TGGCTCTGAATGAATATAAA+CGG - chr7_1:27685878-27685897 Msa1015360:five_prime_UTR 30.0%
CAAAGTACATGCAAATGAAG+AGG + chr7_1:27680195-27680214 None:intergenic 35.0%
GATCATAAGAAAGAATGTGG+TGG + chr7_1:27680357-27680376 None:intergenic 35.0%
TAGATCAGAGTAGAAGAAGA+TGG - chr7_1:27680441-27680460 Msa1015360:intron 35.0%
AGATCAGAGTAGAAGAAGAT+GGG - chr7_1:27680442-27680461 Msa1015360:intron 35.0%
AGAAGATGGGAACAAATGAA+TGG - chr7_1:27680455-27680474 Msa1015360:intron 35.0%
GTAGAAAGAAGAGATAGCAT+AGG - chr7_1:27680481-27680500 Msa1015360:CDS 35.0%
!!! CATTAAGCGTTTTGATTTGC+AGG - chr7_1:27681063-27681082 Msa1015360:CDS 35.0%
AAAATGTGAACTTCATCAGG+TGG + chr7_1:27681097-27681116 None:intergenic 35.0%
CCAAAAATGTGAACTTCATC+AGG + chr7_1:27681100-27681119 None:intergenic 35.0%
! CCTGATGAAGTTCACATTTT+TGG - chr7_1:27681097-27681116 Msa1015360:intron 35.0%
!!! TTCACATTTTTGGCTATGCA+AGG - chr7_1:27681107-27681126 Msa1015360:intron 35.0%
TTTCCCTTTCTCTTGCTTAT+AGG - chr7_1:27681542-27681561 Msa1015360:intron 35.0%
ATAGTAAAGAGGGTTCATCT+CGG - chr7_1:27681649-27681668 Msa1015360:intron 35.0%
TTGATCATCTTGCAAACAGA+TGG + chr7_1:27681711-27681730 None:intergenic 35.0%
CGTACATTTATTCATGCAAC+AGG + chr7_1:27681736-27681755 None:intergenic 35.0%
TTTCTCCTATTAGCTGATCT+TGG - chr7_1:27681955-27681974 Msa1015360:intron 35.0%
GAAGAACTCAGTACTCAAAT+CGG - chr7_1:27682033-27682052 Msa1015360:intron 35.0%
TATTGATCACTACTTGGGAA+AGG - chr7_1:27682086-27682105 Msa1015360:intron 35.0%
!!! GGGTTTTGGTTTTGATTTTC+TGG - chr7_1:27682493-27682512 Msa1015360:intron 35.0%
!!! GGTGGATATTTTGACCAATA+TGG - chr7_1:27682555-27682574 Msa1015360:intron 35.0%
AACTTAACACGTACCCATAT+TGG + chr7_1:27682572-27682591 None:intergenic 35.0%
GCATTATGATCTCAACAGAA+TGG + chr7_1:27682972-27682991 None:intergenic 35.0%
TAAAATATTCAGGAGACTGG+AGG + chr7_1:27683004-27683023 None:intergenic 35.0%
CATAAACCTATCAATGCAGA+TGG - chr7_1:27683072-27683091 Msa1015360:intron 35.0%
AGAGATGATGAAGTTGTTCT+TGG - chr7_1:27683536-27683555 Msa1015360:intron 35.0%
GTTGTTCTTGGACAATATGA+AGG - chr7_1:27683548-27683567 Msa1015360:intron 35.0%
AATAGTAGTTGCAAAAGTCG+GGG + chr7_1:27683612-27683631 None:intergenic 35.0%
GAATAGTAGTTGCAAAAGTC+GGG + chr7_1:27683613-27683632 None:intergenic 35.0%
! CTTTTGCAACTACTATTCTG+CGG - chr7_1:27683615-27683634 Msa1015360:intron 35.0%
ATACACAATGTAAGATGGGA+AGG - chr7_1:27683638-27683657 Msa1015360:intron 35.0%
GCATTTCCTTCTTGAAGAAA+TGG - chr7_1:27683677-27683696 Msa1015360:CDS 35.0%
GAAGAACCATTTCTTCAAGA+AGG + chr7_1:27683686-27683705 None:intergenic 35.0%
! AGACCTTTAATCTGAAGTGT+CGG - chr7_1:27683895-27683914 Msa1015360:CDS 35.0%
TTCCTTTCATTGTGAAAGCA+GGG - chr7_1:27684007-27684026 Msa1015360:intron 35.0%
! ATGTTCCTGGTGATATTTTC+AGG - chr7_1:27684076-27684095 Msa1015360:intron 35.0%
!!! CAACAAAAGTTTTTTCCCAC+TGG + chr7_1:27684271-27684290 None:intergenic 35.0%
! AAATAGCTTCTGAAGGTTGT+AGG + chr7_1:27684494-27684513 None:intergenic 35.0%
GGCATAGTTGTTCACATTAT+GGG + chr7_1:27684552-27684571 None:intergenic 35.0%
TGGCATAGTTGTTCACATTA+TGG + chr7_1:27684553-27684572 None:intergenic 35.0%
!!! AACTATGCCACTTGTTTTAC+CGG - chr7_1:27684563-27684582 Msa1015360:intron 35.0%
AGTGAACTAGACTTGTCATA+TGG - chr7_1:27684860-27684879 Msa1015360:intron 35.0%
GTGAACTAGACTTGTCATAT+GGG - chr7_1:27684861-27684880 Msa1015360:intron 35.0%
CAATTATTCCATAGACTCAG+TGG + chr7_1:27685055-27685074 None:intergenic 35.0%
GTCTTAAAAACTATAAGCGC+TGG - chr7_1:27685097-27685116 Msa1015360:intron 35.0%
! TTGTTTCTTGTTAGGCATCA+TGG - chr7_1:27685544-27685563 Msa1015360:intron 35.0%
ATTTGGTCACTCTATAAGGT+AGG + chr7_1:27685717-27685736 None:intergenic 35.0%
!! GGCTCTGAATGAATATAAAC+GGG - chr7_1:27685879-27685898 Msa1015360:five_prime_UTR 35.0%
! AATGGAAGGTGATAGAGTTT+TGG - chr7_1:27685924-27685943 Msa1015360:five_prime_UTR 35.0%
!! TACCTGGTTTGGTTTGGTTT+GGG + chr7_1:27680148-27680167 None:intergenic 40.0%
! AGTACCCTTTTGACATGAAG+TGG + chr7_1:27680306-27680325 None:intergenic 40.0%
ACACTCTCTATTGTTGTGCT+TGG - chr7_1:27680544-27680563 Msa1015360:intron 40.0%
TGCAGGAAAAGTCTTCTTCT+TGG + chr7_1:27680587-27680606 None:intergenic 40.0%
CATTAACCACTTGAGTCGAA+CGG + chr7_1:27680698-27680717 None:intergenic 40.0%
ACTCATGTTTGAATCCTGAC+TGG - chr7_1:27680751-27680770 Msa1015360:intron 40.0%
AGGTAAGTAAAGTCTAGCCA+AGG + chr7_1:27680783-27680802 None:intergenic 40.0%
TCTCTAGTTGGAAAGGGAAA+GGG + chr7_1:27680832-27680851 None:intergenic 40.0%
TTCTCTAGTTGGAAAGGGAA+AGG + chr7_1:27680833-27680852 None:intergenic 40.0%
TGGCTATGCATCATAGTACA+TGG - chr7_1:27681190-27681209 Msa1015360:intron 40.0%
TTTGCTCACTGCTTCTTTCA+CGG - chr7_1:27681267-27681286 Msa1015360:intron 40.0%
AGCTATCTTGTTCCAGAGAA+AGG - chr7_1:27681384-27681403 Msa1015360:intron 40.0%
GATAAATGGTGATAGACAGC+TGG + chr7_1:27681463-27681482 None:intergenic 40.0%
AGCCATCCTCAGAATCATAA+GGG + chr7_1:27681584-27681603 None:intergenic 40.0%
AAGCCATCCTCAGAATCATA+AGG + chr7_1:27681585-27681604 None:intergenic 40.0%
CAAACAGATGGATACACTGA+AGG + chr7_1:27681699-27681718 None:intergenic 40.0%
! ATTTTCTCTGTCCAAGCCAT+GGG + chr7_1:27681819-27681838 None:intergenic 40.0%
! TATTTTCTCTGTCCAAGCCA+TGG + chr7_1:27681820-27681839 None:intergenic 40.0%
GCTTGGACAGAGAAAATACA+GGG - chr7_1:27681822-27681841 Msa1015360:intron 40.0%
CAGAGAAAATACAGGGTTGA+AGG - chr7_1:27681829-27681848 Msa1015360:intron 40.0%
AGAAAATACAGGGTTGAAGG+AGG - chr7_1:27681832-27681851 Msa1015360:intron 40.0%
ATCCACCAAGATCAGCTAAT+AGG + chr7_1:27681963-27681982 None:intergenic 40.0%
TATTAGCTGATCTTGGTGGA+TGG - chr7_1:27681962-27681981 Msa1015360:intron 40.0%
! GTTGTTGTTGAGAAACCCTT+TGG - chr7_1:27681991-27682010 Msa1015360:intron 40.0%
TTGTTGAGAAACCCTTTGGT+AGG - chr7_1:27681995-27682014 Msa1015360:intron 40.0%
TGTTGAGAAACCCTTTGGTA+GGG - chr7_1:27681996-27682015 Msa1015360:intron 40.0%
CCATATTAAGAGGGAATGAG+TGG + chr7_1:27682178-27682197 None:intergenic 40.0%
CCACTCATTCCCTCTTAATA+TGG - chr7_1:27682175-27682194 Msa1015360:intron 40.0%
!! CAGTGCGTATTTTGTTTCCA+TGG - chr7_1:27682420-27682439 Msa1015360:intron 40.0%
TGTGGTATCTAAGTTAGCCA+TGG + chr7_1:27682440-27682459 None:intergenic 40.0%
CTGGCAGATAGTATTTAGAG+AGG - chr7_1:27682512-27682531 Msa1015360:intron 40.0%
!!! AGAGAGGATTTTGGAACTGA+TGG - chr7_1:27682528-27682547 Msa1015360:intron 40.0%
CATTCAAAACCATCTGTTGC+AGG - chr7_1:27682829-27682848 Msa1015360:intron 40.0%
AAAACCATCTGTTGCAGGTA+AGG - chr7_1:27682834-27682853 Msa1015360:intron 40.0%
TGTTGAGATCATAATGCACC+TGG - chr7_1:27682975-27682994 Msa1015360:intron 40.0%
! TGCATATTTTCCACCAACTC+AGG - chr7_1:27683140-27683159 Msa1015360:intron 40.0%
ATCAAGCAAAGAACCTGAGT+TGG + chr7_1:27683156-27683175 None:intergenic 40.0%
GGTTCTTTGCTTGATTGCTA+TGG - chr7_1:27683161-27683180 Msa1015360:intron 40.0%
CATTCGAGATGAGAAAGTGA+AGG - chr7_1:27683212-27683231 Msa1015360:intron 40.0%
ACAGAAGGAGATCAAGAAGT+AGG + chr7_1:27683334-27683353 None:intergenic 40.0%
TGCGGATACACAATGTAAGA+TGG - chr7_1:27683633-27683652 Msa1015360:intron 40.0%
GCGGATACACAATGTAAGAT+GGG - chr7_1:27683634-27683653 Msa1015360:intron 40.0%
TCTTCAAGAAGGAAATGCTG+AGG + chr7_1:27683675-27683694 None:intergenic 40.0%
CAACATGTTAGTGTCAGTGT+CGG + chr7_1:27683779-27683798 None:intergenic 40.0%
GAAACTGAATGGAACTAACC+TGG - chr7_1:27683826-27683845 Msa1015360:CDS 40.0%
GTTCCTTTCATTGTGAAAGC+AGG - chr7_1:27684006-27684025 Msa1015360:intron 40.0%
TTCCCTGCTTTCACAATGAA+AGG + chr7_1:27684012-27684031 None:intergenic 40.0%
TTTCATTGTGAAAGCAGGGA+AGG - chr7_1:27684011-27684030 Msa1015360:intron 40.0%
CTCTGCCTTCCTAGAATTTA+GGG + chr7_1:27684037-27684056 None:intergenic 40.0%
TCTCTGCCTTCCTAGAATTT+AGG + chr7_1:27684038-27684057 None:intergenic 40.0%
! ATTCTAGGAAGGCAGAGATT+CGG - chr7_1:27684040-27684059 Msa1015360:intron 40.0%
! AGAGATTCGGGTTCAATTCA+AGG - chr7_1:27684053-27684072 Msa1015360:intron 40.0%
GTTCAATTCAAGGATGTTCC+TGG - chr7_1:27684063-27684082 Msa1015360:intron 40.0%
GTACTCCTGAAAATATCACC+AGG + chr7_1:27684084-27684103 None:intergenic 40.0%
AAATGCAGCACATCATCTCA+AGG + chr7_1:27684326-27684345 None:intergenic 40.0%
! TGAGATGATGTGCTGCATTT+TGG - chr7_1:27684326-27684345 Msa1015360:CDS 40.0%
! GTCTAGTTCACTTTGAACTG+CGG + chr7_1:27684852-27684871 None:intergenic 40.0%
TCATATGGGCAACGATATCA+AGG - chr7_1:27684875-27684894 Msa1015360:intron 40.0%
CATATGGGCAACGATATCAA+GGG - chr7_1:27684876-27684895 Msa1015360:intron 40.0%
GAAGTTTACCACTGAGTCTA+TGG - chr7_1:27685044-27685063 Msa1015360:intron 40.0%
!! TAGTCTCTGAAATTGTCACG+AGG - chr7_1:27685211-27685230 Msa1015360:intron 40.0%
TGTTCGCAGAGACGAATTAA+AGG - chr7_1:27685449-27685468 Msa1015360:CDS 40.0%
AACGTTTACGAATCAAGACG+TGG + chr7_1:27685506-27685525 None:intergenic 40.0%
AATAACTCATCTGCTTCTGC+AGG + chr7_1:27685648-27685667 None:intergenic 40.0%
GCTGGATATGTTCAAACACA+CGG - chr7_1:27685675-27685694 Msa1015360:intron 40.0%
!! TGGTTTGGTTTGGTTTGGGT+TGG + chr7_1:27680144-27680163 None:intergenic 45.0%
AACCCAAACCAAACCAAACC+AGG - chr7_1:27680143-27680162 Msa1015360:three_prime_UTR 45.0%
!! GTACCTGGTTTGGTTTGGTT+TGG + chr7_1:27680149-27680168 None:intergenic 45.0%
!! TGTGTGTACCTGGTTTGGTT+TGG + chr7_1:27680154-27680173 None:intergenic 45.0%
AGTTGTGTGTGTACCTGGTT+TGG + chr7_1:27680159-27680178 None:intergenic 45.0%
AGAGTAGTTGTGTGTGTACC+TGG + chr7_1:27680164-27680183 None:intergenic 45.0%
TGAATCTCCTGTAGCAAGAG+AGG - chr7_1:27680507-27680526 Msa1015360:intron 45.0%
TCAAGTACCTCTCTTGCTAC+AGG + chr7_1:27680517-27680536 None:intergenic 45.0%
!! GCAAGAGAGGTACTTGAAAC+TGG - chr7_1:27680520-27680539 Msa1015360:intron 45.0%
!! ATTGTTGTGCTTGGTGCTTC+TGG - chr7_1:27680553-27680572 Msa1015360:intron 45.0%
ACTTGAGTCGAACGGCTAAT+TGG + chr7_1:27680690-27680709 None:intergenic 45.0%
AATTAGCCGTTCGACTCAAG+TGG - chr7_1:27680689-27680708 Msa1015360:intron 45.0%
CATGAGTTATCCCGAACGAT+TGG + chr7_1:27680738-27680757 None:intergenic 45.0%
ATCCTGACTGGAACAATCCT+TGG - chr7_1:27680763-27680782 Msa1015360:intron 45.0%
CTTACCTCGTAGCTGAACTT+CGG - chr7_1:27680796-27680815 Msa1015360:intron 45.0%
TAATCCGAAGTTCAGCTACG+AGG + chr7_1:27680803-27680822 None:intergenic 45.0%
TAGCTGAACTTCGGATTACC+AGG - chr7_1:27680805-27680824 Msa1015360:intron 45.0%
!! TTAGGAGAAGCACCTTTCTC+TGG + chr7_1:27681399-27681418 None:intergenic 45.0%
AAGTGGCCCTTATGATTCTG+AGG - chr7_1:27681575-27681594 Msa1015360:intron 45.0%
! TGAGGATGGCTTTTGCTTGT+TGG - chr7_1:27681593-27681612 Msa1015360:intron 45.0%
ACAGATGGATACACTGAAGG+AGG + chr7_1:27681696-27681715 None:intergenic 45.0%
GCTTAAAATGCCTAAGCCCA+TGG - chr7_1:27681800-27681819 Msa1015360:intron 45.0%
GGCTTGGACAGAGAAAATAC+AGG - chr7_1:27681821-27681840 Msa1015360:intron 45.0%
CTCCTATTAGCTGATCTTGG+TGG - chr7_1:27681958-27681977 Msa1015360:intron 45.0%
GATTGCAGATCCCTACCAAA+GGG + chr7_1:27682009-27682028 None:intergenic 45.0%
AGATTGCAGATCCCTACCAA+AGG + chr7_1:27682010-27682029 None:intergenic 45.0%
! ATCGGTTCTTCTTGCCTCTT+TGG - chr7_1:27682230-27682249 Msa1015360:intron 45.0%
ATGTGGTTGTGGTTCCAAAG+AGG + chr7_1:27682247-27682266 None:intergenic 45.0%
GCACATTGTCAATGTGGTTG+TGG + chr7_1:27682258-27682277 None:intergenic 45.0%
CAACCACATTGACAATGTGC+AGG - chr7_1:27682258-27682277 Msa1015360:intron 45.0%
TCACCTGCACATTGTCAATG+TGG + chr7_1:27682264-27682283 None:intergenic 45.0%
!!! GATTTTGGAACTGATGGTCG+TGG - chr7_1:27682534-27682553 Msa1015360:intron 45.0%
! AAGCAAAGAACCTGAGTTGG+TGG + chr7_1:27683153-27683172 None:intergenic 45.0%
TTCTCATCTCGAATGTGCTC+AGG + chr7_1:27683207-27683226 None:intergenic 45.0%
GATGCGTAGTCAGATACAGA+AGG + chr7_1:27683349-27683368 None:intergenic 45.0%
TTGAATCGTCCGGTACAGTT+GGG + chr7_1:27683586-27683605 None:intergenic 45.0%
TTTGAATCGTCCGGTACAGT+TGG + chr7_1:27683587-27683606 None:intergenic 45.0%
!! CTAACCTGGTAGTGTCGTTT+CGG - chr7_1:27683840-27683859 Msa1015360:CDS 45.0%
TGTCTGACAGTGATACGTGT+CGG - chr7_1:27683863-27683882 Msa1015360:CDS 45.0%
! GCACCGACACTTCAGATTAA+AGG + chr7_1:27683901-27683920 None:intergenic 45.0%
! GAAGGCCCTAAATTCTAGGA+AGG - chr7_1:27684029-27684048 Msa1015360:intron 45.0%
! TTCTAGGAAGGCAGAGATTC+GGG - chr7_1:27684041-27684060 Msa1015360:intron 45.0%
! TAGCTTCTGAAGGTTGTAGG+CGG + chr7_1:27684491-27684510 None:intergenic 45.0%
AGGCAATCCGGTAAAACAAG+TGG + chr7_1:27684573-27684592 None:intergenic 45.0%
CAACGCTATAAGAGGCAATC+CGG + chr7_1:27684585-27684604 None:intergenic 45.0%
CTTATGCTTGTCTTGCATGC+AGG - chr7_1:27684802-27684821 Msa1015360:CDS 45.0%
ATTAGACGCTCGTAAGCTTC+TGG + chr7_1:27684911-27684930 None:intergenic 45.0%
TGGTCACTCTATAAGGTAGG+AGG + chr7_1:27685714-27685733 None:intergenic 45.0%
AGCCAAGGATTGTTCCAGTC+AGG + chr7_1:27680768-27680787 None:intergenic 50.0%
! GGCCCTTATGATTCTGAGGA+TGG - chr7_1:27681579-27681598 Msa1015360:intron 50.0%
GTAAAGAGGGTTCATCTCGG+AGG - chr7_1:27681652-27681671 Msa1015360:intron 50.0%
AAATGCCTAAGCCCATGGCT+TGG - chr7_1:27681805-27681824 Msa1015360:intron 50.0%
! TTTGGAACTGATGGTCGTGG+TGG - chr7_1:27682537-27682556 Msa1015360:intron 50.0%
AAGGCCTTACCTGCAACAGA+TGG + chr7_1:27682841-27682860 None:intergenic 50.0%
TGCTCAGGCTTGAGAGAAAC+GGG + chr7_1:27683192-27683211 None:intergenic 50.0%
GTGCTCAGGCTTGAGAGAAA+CGG + chr7_1:27683193-27683212 None:intergenic 50.0%
CAGAGATGACCCAACTGTAC+CGG - chr7_1:27683574-27683593 Msa1015360:intron 50.0%
CAGGGAAGGCCCTAAATTCT+AGG - chr7_1:27684025-27684044 Msa1015360:intron 50.0%
! ACGCTCGTAAGCTTCTGGAA+TGG + chr7_1:27684906-27684925 None:intergenic 50.0%
TGATAGAGGGGAGTTGAAGC+CGG - chr7_1:27685596-27685615 Msa1015360:intron 50.0%
GTTGGAAAGGGAAAGGGTCC+TGG + chr7_1:27680826-27680845 None:intergenic 55.0%
TCTGTCCAAGCCATGGGCTT+AGG + chr7_1:27681813-27681832 None:intergenic 55.0%
TCAGGAGACTGGAGGTTACC+AGG + chr7_1:27682996-27683015 None:intergenic 55.0%
CGGGCTGCATTGAAATGTGC+AGG - chr7_1:27683490-27683509 Msa1015360:intron 55.0%
! GTCGGGGTGTTTGAATCGTC+CGG + chr7_1:27683596-27683615 None:intergenic 55.0%
GACACCGAAACGACACTACC+AGG + chr7_1:27683847-27683866 None:intergenic 55.0%
TGCATGCAGGTCAAGCAACC+TGG - chr7_1:27684815-27684834 Msa1015360:CDS 55.0%
ACTGCGGACATTTCCAGTCC+AGG + chr7_1:27684836-27684855 None:intergenic 55.0%
! GAAGCCGGTTCCTTACAAGC+CGG - chr7_1:27685611-27685630 Msa1015360:intron 55.0%
! AAGCCGGTTCCTTACAAGCC+GGG - chr7_1:27685612-27685631 Msa1015360:intron 55.0%
! CTTCCCGGCTTGTAAGGAAC+CGG + chr7_1:27685618-27685637 None:intergenic 55.0%
! CCTCTACTTCCCGGCTTGTA+AGG + chr7_1:27685624-27685643 None:intergenic 55.0%
CCTTACAAGCCGGGAAGTAG+AGG - chr7_1:27685621-27685640 Msa1015360:intron 55.0%
TCTGCAGGACCTCTACTTCC+CGG + chr7_1:27685633-27685652 None:intergenic 55.0%
GCAGGTCAAGCAACCTGGAC+TGG - chr7_1:27684820-27684839 Msa1015360:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 27679986 27685953 27679986 ID=Msa1015360;Name=Msa1015360
chr7_1 mRNA 27679986 27685953 27679986 ID=Msa1015360-mRNA-1;Parent=Msa1015360;Name=Msa1015360-mRNA-1;_AED=0.19;_eAED=0.19;_QI=209|0.87|0.82|1|0.87|0.76|17|206|508
chr7_1 exon 27679986 27680111 27679986 ID=Msa1015360-mRNA-1:exon:5902;Parent=Msa1015360-mRNA-1
chr7_1 exon 27680134 27680381 27680134 ID=Msa1015360-mRNA-1:exon:5901;Parent=Msa1015360-mRNA-1
chr7_1 exon 27680469 27680514 27680469 ID=Msa1015360-mRNA-1:exon:5900;Parent=Msa1015360-mRNA-1
chr7_1 exon 27681000 27681115 27681000 ID=Msa1015360-mRNA-1:exon:5899;Parent=Msa1015360-mRNA-1
chr7_1 exon 27681412 27681482 27681412 ID=Msa1015360-mRNA-1:exon:5898;Parent=Msa1015360-mRNA-1
chr7_1 exon 27681855 27681935 27681855 ID=Msa1015360-mRNA-1:exon:5897;Parent=Msa1015360-mRNA-1
chr7_1 exon 27682280 27682427 27682280 ID=Msa1015360-mRNA-1:exon:5896;Parent=Msa1015360-mRNA-1
chr7_1 exon 27682706 27682777 27682706 ID=Msa1015360-mRNA-1:exon:5895;Parent=Msa1015360-mRNA-1
chr7_1 exon 27683089 27683125 27683089 ID=Msa1015360-mRNA-1:exon:5894;Parent=Msa1015360-mRNA-1
chr7_1 exon 27683362 27683420 27683362 ID=Msa1015360-mRNA-1:exon:5893;Parent=Msa1015360-mRNA-1
chr7_1 exon 27683660 27683728 27683660 ID=Msa1015360-mRNA-1:exon:5892;Parent=Msa1015360-mRNA-1
chr7_1 exon 27683814 27684002 27683814 ID=Msa1015360-mRNA-1:exon:5891;Parent=Msa1015360-mRNA-1
chr7_1 exon 27684226 27684375 27684226 ID=Msa1015360-mRNA-1:exon:5890;Parent=Msa1015360-mRNA-1
chr7_1 exon 27684487 27684553 27684487 ID=Msa1015360-mRNA-1:exon:5889;Parent=Msa1015360-mRNA-1
chr7_1 exon 27684769 27684854 27684769 ID=Msa1015360-mRNA-1:exon:5888;Parent=Msa1015360-mRNA-1
chr7_1 exon 27685312 27685509 27685312 ID=Msa1015360-mRNA-1:exon:5887;Parent=Msa1015360-mRNA-1
chr7_1 exon 27685775 27685953 27685775 ID=Msa1015360-mRNA-1:exon:5886;Parent=Msa1015360-mRNA-1
chr7_1 five_prime_UTR 27685775 27685953 27685775 ID=Msa1015360-mRNA-1:five_prime_utr;Parent=Msa1015360-mRNA-1
chr7_1 five_prime_UTR 27685480 27685509 27685480 ID=Msa1015360-mRNA-1:five_prime_utr;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27685312 27685479 27685312 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27684769 27684854 27684769 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27684487 27684553 27684487 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27684226 27684375 27684226 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27683814 27684002 27683814 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27683660 27683728 27683660 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27683362 27683420 27683362 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27683089 27683125 27683089 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27682706 27682777 27682706 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27682280 27682427 27682280 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27681855 27681935 27681855 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27681412 27681482 27681412 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27681000 27681115 27681000 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27680469 27680514 27680469 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 CDS 27680214 27680381 27680214 ID=Msa1015360-mRNA-1:cds;Parent=Msa1015360-mRNA-1
chr7_1 three_prime_UTR 27680134 27680213 27680134 ID=Msa1015360-mRNA-1:three_prime_utr;Parent=Msa1015360-mRNA-1
chr7_1 three_prime_UTR 27679986 27680111 27679986 ID=Msa1015360-mRNA-1:three_prime_utr;Parent=Msa1015360-mRNA-1
Gene Sequence

>Msa1015360

ATGGGAACAAATGAATGGCATGTAGAAAGAAGAGATAGCATAGGTACTGAATCTCCTGTAGCAAGAGAGGTACTTGAAACTGGCACACTCTCTATTGTTGTGCTTGGTGCTTCTGGTGATCTTGCCAAGAAGAAGACTTTTCCTGCACTTTTTCACTTATATAAACAGGAATTGTTGCCACCTGATGAAGTTCACATTTTTGGCTATGCAAGGTCAAAGATCTCTGATGATGAATTGAGAAACAAATTGCGTAGCTATCTTGTTCCAGAGAAAGGTGCTTCTCCTAAACAGTTAGATGATGTATCGAAGTTTTTACAATTGGTTAAATATGTAAGTGGCCCTTATGATTCTGAGGATGGCTTTTGCTTGTTGGATAAAGAGATTTCAGAGCATGAATATTTGAAAAATAGTAAAGAGGGTTCATCTCGGAGGCTTTTCTATCTTGCACTTCCTCCTTCAGTGTATCCATCTAAATCTAATATTGGTTTGTTTCTCCTATTAGCTGATCTTGGTGGATGGACACGTGTTGTTGTTGAGAAACCCTTTGGTAGGGATCTGCAATCTGCAGAAGAACTCAGTACTCAAATCGGAGAGTTGTTCGAAGAACCACAAATTTATCGTATTGATCACTACTTGGGAAAGGAATTAGTGCAAAACATGTTAGTACTTCGTTTTGCAAATCGGTTCTTCTTGCCTCTTTGGAACCACAACCACATTGACAATGTGCAGATAGTATTTAGAGAGGATTTTGGAACTGATGGTCGTGGTGGATATTTTGACCAATATGGAATTATCCGAGATATCATTCAAAACCATCTGTTGCAGGTTCTTTGCTTGATTGCTATGGAAAAACCCGTTTCTCTCAAGCCTGAGCACATTCGAGATGAGAAAGTGAAGGTTCTTGAATCAGTACTCCCTATTAGAGATGATGAAGTTGTTCTTGGACAATATGAAGGCTACAGAGATGACCCAACTGTACCGGACGATTCAAACACCCCGACTTTTGCAACTACTATTCTGCGGATACACAATGTAAGATGGGAAGGTGTTCCTTTCATTGTGAAAGCAGGGAAGGCCCTAAATTCTAGGAAGGCAGAGATTCGGGTTCAATTCAAGGATGTTCCTGGTAAAAAGCAAGGGAGAAATGAGTTTGTTATCCGCCTACAACCTTCAGAAGCTATTTACATGAAGCTTACGGTCAAGCAACCTGGACTGGAAATGTCCGCAGTTCAAAGTGAACTAGACTTGTCATATGGGCAACGATATCAAGGGATAACCATTCCAGAAGCTTACGAGCGTCTAATTCTTGACACAATTAGAGGTGATCAACAACATTTTGTTCGCAGAGACGAATTAAAGGCATCATGGCAAATATTCACACCACTTTTACACAAAATTGATAGAGGGGAGTTGAAGCCGGTTCCTTACAAGCCGGGAAGTAGAGGTCCTGCAGAAGCAGATGAGTTATTAGAAAAAGCTGGATATGTTCAAACACACGGTTATATATGGATTCCTCCTACCTTATAG

Protein sequence

>Msa1015360

MGTNEWHVERRDSIGTESPVAREVLETGTLSIVVLGASGDLAKKKTFPALFHLYKQELLPPDEVHIFGYARSKISDDELRNKLRSYLVPEKGASPKQLDDVSKFLQLVKYVSGPYDSEDGFCLLDKEISEHEYLKNSKEGSSRRLFYLALPPSVYPSKSNIGLFLLLADLGGWTRVVVEKPFGRDLQSAEELSTQIGELFEEPQIYRIDHYLGKELVQNMLVLRFANRFFLPLWNHNHIDNVQIVFREDFGTDGRGGYFDQYGIIRDIIQNHLLQVLCLIAMEKPVSLKPEHIRDEKVKVLESVLPIRDDEVVLGQYEGYRDDPTVPDDSNTPTFATTILRIHNVRWEGVPFIVKAGKALNSRKAEIRVQFKDVPGKKQGRNEFVIRLQPSEAIYMKLTVKQPGLEMSAVQSELDLSYGQRYQGITIPEAYERLILDTIRGDQQHFVRRDELKASWQIFTPLLHKIDRGELKPVPYKPGSRGPAEADELLEKAGYVQTHGYIWIPPTL*