AlfalfaGEDB | Msa0597180

M. sativa cultivar zhongmu-4 / Msa0597180

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597180	XP_013447932.1	96.839	949	25	2	1	948	1	945	0.0	1850

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597180	sp\|Q8VZG8\|MIK2_ARATH	41.131	1026	492	21	16	941	28	1041	0.0	711

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0597180	0.828377	9.302159e-55	-8.615850e-47
Msa0001510	Msa0597180	-0.805364	1.383240e-49	-8.615850e-47
Msa0002110	Msa0597180	-0.829358	5.382622e-55	-8.615850e-47
Msa0002690	Msa0597180	-0.819189	1.323456e-52	-8.615850e-47
Msa0002700	Msa0597180	-0.818165	2.259781e-52	-8.615850e-47
Msa0004180	Msa0597180	-0.854602	1.103535e-61	-8.615850e-47
Msa0007570	Msa0597180	-0.811093	8.318344e-51	-8.615850e-47
Msa0011010	Msa0597180	0.823498	1.340806e-53	-8.615850e-47
Msa0011040	Msa0597180	0.814910	1.210837e-51	-8.615850e-47
Msa0011100	Msa0597180	-0.801041	1.085675e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597180	MtrunA17_Chr4g0019041	96.839	949	25	2	1	948	1	945	0.0	1850
Msa0597180	MtrunA17_Chr4g0019371	92.518	949	61	3	1	948	1	940	0.0	1693
Msa0597180	MtrunA17_Chr1g0165951	44.219	986	462	13	36	946	31	1003	0.0	753
Msa0597180	MtrunA17_Chr7g0233881	45.946	925	456	13	40	946	49	947	0.0	749
Msa0597180	MtrunA17_Chr1g0165971	42.278	1036	461	17	36	946	35	1058	0.0	730
Msa0597180	MtrunA17_Chr7g0232451	43.719	995	459	16	21	944	35	999	0.0	722
Msa0597180	MtrunA17_Chr1g0165901	46.720	869	429	12	106	946	379	1241	0.0	712
Msa0597180	MtrunA17_Chr1g0165901	38.910	532	282	6	36	564	99	590	3.12e-87	304
Msa0597180	MtrunA17_Chr1g0165901	38.009	442	237	7	183	597	162	593	1.19e-62	231
Msa0597180	MtrunA17_Chr1g0165281	43.445	923	439	15	36	946	68	919	0.0	712

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597180	AT4G08850.1	41.131	1026	492	21	16	941	28	1041	0.0	711
Msa0597180	AT1G35710.1	41.279	860	459	10	110	941	275	1116	0.0	613
Msa0597180	AT1G35710.1	35.084	533	287	4	35	566	31	505	1.47e-81	287
Msa0597180	AT4G08850.2	39.936	934	450	20	16	850	28	949	0.0	609
Msa0597180	AT1G17230.1	37.344	881	515	11	81	944	212	1072	9.44e-178	545
Msa0597180	AT1G17230.1	34.302	516	327	4	68	583	55	558	1.14e-77	275
Msa0597180	AT1G17230.2	37.344	881	515	11	81	944	212	1072	2.49e-177	545
Msa0597180	AT1G17230.2	34.302	516	327	4	68	583	55	558	1.39e-77	275
Msa0597180	AT5G63930.2	36.725	855	475	13	110	944	206	1014	7.56e-162	502
Msa0597180	AT5G63930.2	33.840	526	304	7	100	599	4	511	1.65e-63	233

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Find 186 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCTTGTAATGATCCA+AGG	0.535592	4_2:+29128727	None:intergenic
AAAATACCTGATGAAATTAG+TGG	0.464323	4_2:-29128603	Msa0597180:CDS
AAAATCTTGATCCGCGTAAC+CGG	0.396621	4_2:+29129187	None:intergenic
AAACCTTACATCAGTTAGGT+TGG	0.544639	4_2:+29129442	None:intergenic
AAACGGTTTGAGATTGTTAA+AGG	0.268436	4_2:-29127880	Msa0597180:CDS
AAACTTGCAATACCTGAGTC+TGG	0.461276	4_2:-29129081	Msa0597180:CDS
AAATCCATGTAAGTAAGATT+TGG	0.365798	4_2:+29129155	None:intergenic
AAATGTGATGTATTCAGCTT+TGG	0.496095	4_2:-29127162	Msa0597180:CDS
AAATGTTTACAAAGCCGAAC+TGG	0.440514	4_2:-29128148	Msa0597180:CDS
AACAACCAATTCTTGATTCA+TGG	0.275095	4_2:-29130066	Msa0597180:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATATGATTATGGTTAAGGT+TGG	+	chr4_2:29126713-29126732	None:intergenic	30.0%
AATCAAGAATTGGTTGTTGA+GGG	+	chr4_2:29126852-29126871	None:intergenic	30.0%
AACAACCAATTCTTGATTCA+TGG	-	chr4_2:29126854-29126873	Msa0597180:three_prime_UTR	30.0%
ATGATCCATGAATCAAGAAT+TGG	+	chr4_2:29126862-29126881	None:intergenic	30.0%
ATCATAAACTTAGCATATGC+TGG	-	chr4_2:29126955-29126974	Msa0597180:CDS	30.0%
CTTAAAACAAACAATCTCAC+CGG	-	chr4_2:29127039-29127058	Msa0597180:CDS	30.0%
TTGTAGAAAGATCAAGAAAC+TGG	+	chr4_2:29127101-29127120	None:intergenic	30.0%
GTCAAATTAGCAATAGAAAG+AGG	+	chr4_2:29127144-29127163	None:intergenic	30.0%
TTTATGTTCCCTATTTCGTT+TGG	+	chr4_2:29127315-29127334	None:intergenic	30.0%
TTTCCTAAAGATGAAGGAAT+TGG	+	chr4_2:29127381-29127400	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	29126706	29130236	29126706	ID=Msa0597180;Name=Msa0597180
chr4_2	mRNA	29126706	29130236	29126706	ID=Msa0597180-mRNA-1;Parent=Msa0597180;Name=Msa0597180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.5\|1\|1\|1\|2\|209\|949
chr4_2	exon	29126706	29127213	29126706	ID=Msa0597180-mRNA-1:exon:7436;Parent=Msa0597180-mRNA-1
chr4_2	exon	29127686	29130236	29127686	ID=Msa0597180-mRNA-1:exon:7435;Parent=Msa0597180-mRNA-1
chr4_2	CDS	29127686	29130236	29127686	ID=Msa0597180-mRNA-1:cds;Parent=Msa0597180-mRNA-1
chr4_2	CDS	29126915	29127213	29126915	ID=Msa0597180-mRNA-1:cds;Parent=Msa0597180-mRNA-1
chr4_2	three_prime_UTR	29126706	29126914	29126706	ID=Msa0597180-mRNA-1:three_prime_utr;Parent=Msa0597180-mRNA-1

Gene Sequence

>Msa0597180

ATGTCCAACCTTAACCATAATCATATGCATATGCATACATTTCCAATTCAAGCTACTTTGTTGGTTTCTTTGTTGCTAGCTCTATGTCAAATCACTTCAGGGTTGACACAATTTGAAGCCTTGTTAAAGTGGAAGCAAAGTCTCCCTCAACAACCAATTCTTGATTCATGGATCATTAACAACTCTAGTTCAACACAAACACCATGTTCATGGAGAGGTATCACTTGTGATTCTAAAGGAAGTGTTACAATCATAAACTTAGCATATGCTGGACTTGAAGGTACTCTTAATCACTTAAACTTGTCAGTTTTTCCAAACCTCCTTCGTCTCGATCTTAAAACAAACAATCTCACCGGTGTTATACCTGAAAACATCGGTGTTCTTTCAAAACTCCAGTTTCTTGATCTTTCTACAAATTATCTAAATGGAACTTTGCCTCTTTCTATTGCTAATTTGACTCAAGTTTATGAGCTTGATGTTTCAAGAAACGACGTATCTGGTATATTAGACCGTCGTTTGTTTCCTGATGACACTGATAAGCCCAGTTCTGGGCTTATCAGTATCAGGAATCTACTTTTCCAAGATACCCTTTTGGGCGGTCGATTACCAAACGAAATAGGGAACATAAAAAACTTGACTATACTAGCACTTGATGGAAACACTTTCTTTGGTCCAATTCCTTCATCTTTAGGAAACTGTAAAAATTTAAGCATTCTGAGATTGAATGAAAACCAATTCTCTGGCTCAATACCACCGAGTATTGGCAAATTGACCAACCTAACTGATGTAAGGTTTTTCACCAATAACTTAAATGGCACTGTGCCACAAGAATTCGGAAACCTTTCATCTTTGGTTGTTTTACATCTTGCTGAGAACAATTTCATTGGTGAGTTACCACCACAAGTTTGCAAAGGTGGCAAACTTTTGAATTTCAGTGCATCCTTTAACAGTTTCACTGGTCCAATTCCAATAAGTCTTAGAAACTGCCCTTCTTTGTATAGAGTTAGGCTTGAATACAACCAGTTAACCGGTTACGCGGATCAAGATTTTGGAGTTTATCCAAATCTTACTTACATGGATTTCAGCTACAATGCGGTCCAAGGTGGTTTATCTTCTAAATGGGGATCCTGTAAAAACTTGCAATACCTGAGTCTGGCTGGTAATTCGGTGAATGGAAAAATTCCTAGTGAAATTTTTCAATTGGAACAATTACAAGAGCTTGATCTATCCTATAACCAATTATCAGGAACTATTCCTCCACAAATTGAAAATGCTTCAAATTTGTATCTTTTAAATTTGGGTGGAAATAGGCTTTCTGGTAAGGTGCCAATAGAAATTGGAAAGCTTTCAAATTTGCAATATTTAGACCTTTCAATGAATTCATTTTTAGGAGAAATTCCGATTCAGATAGGTGATTGTTCCAATCTGCTGAATTTAAATTTGAGTAATAATCACTTGAATGGCACAATTCCTTTCCAAATTGGAAACCTTGGATCATTACAAGACTTTTTGGATTTGAGTTACAATTCAATTTCGGGGGAAATTCCTTCTAATATTGGTAAGCTTTCAAATTTGATAAGCTTGAATATCTCAAACAACAATTTGTCAGGTAAAATACCTGATGAAATTAGTGGAATGTTGAGTTTGTCAAGTCTTAACCTCTCTTACAATCATTTGGAGGGGAATGTTCCTAAGAGTGGCATTTTCAAATTAAACTCTTCTCATGTGCTTGACTTGAGCAACAATCAAGGTCTATGTGGTAGTTTCAAGGGTTTGATACCTTGTAATGTTTCATCAAGTGAACCAAGTGATGGAGGAAGCAACAAAAAAAAGGTTGTGATTCCTATAGTTGCTTCTTTAGGAGGTGCGCTTCTTCTTTCATTGGTAATTGTTGGCGTAATTTTGTTGTGCTACAAGAAAAAATCAAGAACTTTACGAAAGTCTTCATTTAAGATGCCAAATCCATTTTCAATTTGGTACTTCAATGGAAGAGTTGTATATAGCGACATAATTGAAGCTACCAACAATTTTGACAACAAGTATTGCATTGGCGAAGGCGCGTTTGGAAATGTTTACAAAGCCGAACTGGAAGGAGGTCAAATATTCGCGGTGAAAAAGCTGAAATGTGATGAAGAAAACTTAGACACAGAGAGTATAAAAACATTTGAAAGCGAGGTTGAAGCCATGACAGAAACAAGGCACAGAAACATTGTGAAGCTTTATGGATTTTGTTGTGAAGGGATGCACACATTTCTTGTTTATGAGTATATGGATCGAGGGAGTTTAGAGGAAATGCTGATTGATAATAAGAGAGCGTTGGAACTTGATTGGTCTAAACGGTTTGAGATTGTTAAAGGCGTTGCGAGTGCTCTCTCTTATATGCATCATGATTGTTCTCCAGCTTTGATTCATAGAGATATATCAAGCAAAAATGTTTTGTTATCTTACAATCTTGAAGCTCATGTCTCAGATTTTGGTACTGCAAGGTTTCTTAAGCCAAATTCACCTATTTGGACTTCATTTGCTGGCACATATGGTTATGCTGCTCCAGAACTTGCTTACACAATGGCAGTGACAGAAAAATGTGATGTATTCAGCTTTGGTGTTTTAGCATTTGAGATTCTAACAGGAAAGCACCCTGGTGATCTTGTTTCTTACATACAAACATCAAATGATCAAAAGATTGACTTCAAAGAAATTTTAGACCCTCGCTTACCTTCACCTCAAAAGAACATTTTGAAGGAGTTGGCATTGGTTGCAAATTTAGCTCTTTCTTGCTTACATACACACCCTCAATCCAGACCTACTATGAGAAGTGTAGCCCAGTTTCTAGAAATGGAGAGCCCATAA

Protein sequence

>Msa0597180

MSNLNHNHMHMHTFPIQATLLVSLLLALCQITSGLTQFEALLKWKQSLPQQPILDSWIINNSSSTQTPCSWRGITCDSKGSVTIINLAYAGLEGTLNHLNLSVFPNLLRLDLKTNNLTGVIPENIGVLSKLQFLDLSTNYLNGTLPLSIANLTQVYELDVSRNDVSGILDRRLFPDDTDKPSSGLISIRNLLFQDTLLGGRLPNEIGNIKNLTILALDGNTFFGPIPSSLGNCKNLSILRLNENQFSGSIPPSIGKLTNLTDVRFFTNNLNGTVPQEFGNLSSLVVLHLAENNFIGELPPQVCKGGKLLNFSASFNSFTGPIPISLRNCPSLYRVRLEYNQLTGYADQDFGVYPNLTYMDFSYNAVQGGLSSKWGSCKNLQYLSLAGNSVNGKIPSEIFQLEQLQELDLSYNQLSGTIPPQIENASNLYLLNLGGNRLSGKVPIEIGKLSNLQYLDLSMNSFLGEIPIQIGDCSNLLNLNLSNNHLNGTIPFQIGNLGSLQDFLDLSYNSISGEIPSNIGKLSNLISLNISNNNLSGKIPDEISGMLSLSSLNLSYNHLEGNVPKSGIFKLNSSHVLDLSNNQGLCGSFKGLIPCNVSSSEPSDGGSNKKKVVIPIVASLGGALLLSLVIVGVILLCYKKKSRTLRKSSFKMPNPFSIWYFNGRVVYSDIIEATNNFDNKYCIGEGAFGNVYKAELEGGQIFAVKKLKCDEENLDTESIKTFESEVEAMTETRHRNIVKLYGFCCEGMHTFLVYEYMDRGSLEEMLIDNKRALELDWSKRFEIVKGVASALSYMHHDCSPALIHRDISSKNVLLSYNLEAHVSDFGTARFLKPNSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILTGKHPGDLVSYIQTSNDQKIDFKEILDPRLPSPQKNILKELALVANLALSCLHTHPQSRPTMRSVAQFLEMESP*