AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1301280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1301280 MtrunA17_Chr4g0064601 98.630 292 4 0 1 292 1 292 0.0 592
Msa1301280 MtrunA17_Chr4g0034391 35.185 270 140 9 42 289 70 326 1.76e-32 126
Msa1301280 MtrunA17_Chr4g0009941 27.715 267 147 11 56 292 4 254 3.16e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1301280 AT2G34460.1 72.963 270 65 3 22 289 14 277 2.17e-141 399
Msa1301280 AT3G18890.1 33.453 278 149 11 41 292 62 329 3.75e-30 120
Msa1301280 AT2G37660.1 30.952 168 99 7 135 292 164 324 1.36e-12 67.4
Msa1301280 AT4G31530.1 31.746 315 158 17 8 286 25 318 5.66e-11 62.8

Find 99 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGCAGGTTGACAATTT+TGG 0.186826 8_3:-63245632 Msa1301280:intron
TGATATCACGATCCATATTT+AGG 0.198059 8_3:+63244793 None:intergenic
TGACGTGTTAAACCTAAATA+TGG 0.250892 8_3:-63244805 Msa1301280:three_prime_UTR
AGCGGCTCCATTGACTAAAA+TGG 0.269340 8_3:+63245547 None:intergenic
TCACAGTGGAAGAGCTTAAA+TGG 0.290715 8_3:-63247290 Msa1301280:exon
CACCTTAGTGGCAAAATTAC+AGG 0.310873 8_3:-63245474 Msa1301280:CDS
TGCAACTTGATCTCTGGATA+TGG 0.317263 8_3:+63245225 None:intergenic
CCACAGGCTTTCGGCCAGGC+TGG 0.324155 8_3:-63246431 Msa1301280:CDS
TATTCTATCTTCCCCATTGA+AGG 0.337188 8_3:-63244902 Msa1301280:three_prime_UTR
GTTGAGGAAGGGAAGAGATT+TGG 0.346298 8_3:+63247183 None:intergenic
CGCGCATACCATGATCTCTT+TGG 0.346559 8_3:-63245121 Msa1301280:CDS
TAGTTTGTGCCACAGGCTTT+CGG 0.360254 8_3:-63246440 Msa1301280:CDS
CAGATATTATCGCTGAACTA+TGG 0.361240 8_3:+63245096 None:intergenic
CAGAGTTGTAGCGCCTTGTT+TGG 0.372065 8_3:-63247343 Msa1301280:five_prime_UTR
TTCTATACTAAACCTTCAAT+GGG 0.373388 8_3:+63244890 None:intergenic
ATTCTATACTAAACCTTCAA+TGG 0.373993 8_3:+63244889 None:intergenic
GAAAATCATATCAGGAAATC+TGG 0.374335 8_3:-63245449 Msa1301280:CDS
GATAAGCTAGCTGAAGCAAT+TGG 0.379075 8_3:-63246480 Msa1301280:CDS
TAGCGCCTTGTTTGGTAACC+TGG 0.381119 8_3:-63247335 Msa1301280:five_prime_UTR
TGGATATGGAACCTTCATAA+AGG 0.390225 8_3:+63245239 None:intergenic
TACAGGCAGAAAATCATATC+AGG 0.402158 8_3:-63245457 Msa1301280:CDS
TCCTACTGGAAATGTTGTTA+TGG 0.413074 8_3:-63245381 Msa1301280:CDS
ATAGAATTTCAATACAAAAC+TGG 0.415520 8_3:-63244873 Msa1301280:three_prime_UTR
CACAGGCTTTCGGCCAGGCT+GGG 0.417213 8_3:-63246430 Msa1301280:CDS
GATATTTACTCACATTACTT+TGG 0.417773 8_3:+63244952 None:intergenic
ATAAGCTAGCTGAAGCAATT+GGG 0.423531 8_3:-63246479 Msa1301280:CDS
AGGAAGAGGGAGCGGTGAAT+TGG 0.428132 8_3:+63247212 None:intergenic
AGATTTGGTTCTGAAGGAAG+AGG 0.436139 8_3:+63247198 None:intergenic
GTAGGGTTTCTTGCAATAAG+AGG 0.436214 8_3:+63247262 None:intergenic
TGTGCCACAGGCTTTCGGCC+AGG 0.448901 8_3:-63246435 Msa1301280:CDS
AGCAAGAGATGATGGCATAA+TGG 0.456815 8_3:+63244844 None:intergenic
TTAGTCAATGGAGCCGCTAT+GGG 0.459534 8_3:-63245542 Msa1301280:CDS
TTTAGTCAATGGAGCCGCTA+TGG 0.462769 8_3:-63245543 Msa1301280:CDS
AAACTTACAAATTGAAGAGA+TGG 0.465083 8_3:+63246890 None:intergenic
TACTTCTGCAACTTGATCTC+TGG 0.466748 8_3:+63245219 None:intergenic
TTGGTTGCAGATTAGCAAAT+CGG 0.469195 8_3:-63245063 Msa1301280:three_prime_UTR
GCTGGAGCTACTGGTAGTAC+TGG 0.469225 8_3:-63247007 Msa1301280:CDS
GATGGGAAAGTGTGGAATGT+AGG 0.469287 8_3:+63247244 None:intergenic
CAGCGATAATATCTGAGATT+CGG 0.474779 8_3:-63245088 Msa1301280:exon
GGGAAGAGATTTGGTTCTGA+AGG 0.477299 8_3:+63247192 None:intergenic
GATAACATGAAAGGTATGCT+TGG 0.478300 8_3:+63244930 None:intergenic
GGATTTGCTTGCCCCATGGA+AGG 0.484251 8_3:-63246409 Msa1301280:intron
AGATCATGGTATGCGCGCTT+AGG 0.484675 8_3:+63245127 None:intergenic
ATGGGAAAGTGTGGAATGTA+GGG 0.487437 8_3:+63247245 None:intergenic
GGATATGGAACCTTCATAAA+GGG 0.488764 8_3:+63245240 None:intergenic
TAAAGCTGGGGTTAGAGACT+TGG 0.490510 8_3:-63246942 Msa1301280:CDS
CTATGGAACCAAAGAGATCA+TGG 0.496271 8_3:+63245113 None:intergenic
GAAGCAGTAGTTTGTGCCAC+AGG 0.496380 8_3:-63246447 Msa1301280:CDS
GAGCGGTGAATTGGTGAGTG+TGG 0.497827 8_3:+63247221 None:intergenic
TATCAGGACACCCTTTATGA+AGG 0.503153 8_3:-63245250 Msa1301280:intron
TACAAATTGAAGAGATGGGT+TGG 0.504301 8_3:+63246895 None:intergenic
TGAATTGGTGAGTGTGGGAT+GGG 0.506487 8_3:+63247227 None:intergenic
GCTGGGATTTGCTTGCCCCA+TGG 0.510222 8_3:-63246413 Msa1301280:CDS
GTGGAACAGTTACTTGCAAA+GGG 0.511281 8_3:-63246974 Msa1301280:CDS
TAGAAGAAAGCAAGAGATGA+TGG 0.513897 8_3:+63244836 None:intergenic
AAAATTAACAAACCTTCCAT+GGG 0.515977 8_3:+63246397 None:intergenic
AATTTCCAGGTTACCAAACA+AGG 0.518947 8_3:+63247330 None:intergenic
CGTGGAACAGTTACTTGCAA+AGG 0.522560 8_3:-63246975 Msa1301280:CDS
GTGAATTGGTGAGTGTGGGA+TGG 0.525508 8_3:+63247226 None:intergenic
CTTTCCTGCATGCTTCAACA+AGG 0.527070 8_3:+63245600 None:intergenic
ACAACTTTGTAAGATGCCTC+AGG 0.530129 8_3:+63245175 None:intergenic
TAAACCTTGTTGAAGCATGC+AGG 0.536699 8_3:-63245604 Msa1301280:CDS
AGCGGTGAATTGGTGAGTGT+GGG 0.541130 8_3:+63247222 None:intergenic
TAATATCTGAGATTCGGACT+TGG 0.548694 8_3:-63245082 Msa1301280:three_prime_UTR
AACTTACAAATTGAAGAGAT+GGG 0.550774 8_3:+63246891 None:intergenic
GGGGCAAGCAAATCCCAGCC+TGG 0.552735 8_3:+63246417 None:intergenic
TACCTTTGCGAAGTTGAGGA+AGG 0.555784 8_3:+63247171 None:intergenic
CTGGAAATTACAAGAAAACT+CGG 0.557430 8_3:-63247316 Msa1301280:five_prime_UTR
GAGTGTGGGATGGGAAAGTG+TGG 0.558741 8_3:+63247236 None:intergenic
GTGTTACCTTTGCGAAGTTG+AGG 0.563021 8_3:+63247167 None:intergenic
CTGGAGCTACTGGTAGTACT+GGG 0.565656 8_3:-63247006 Msa1301280:CDS
TGAGGCATCTTACAAAGTTG+TGG 0.567286 8_3:-63245173 Msa1301280:CDS
TATGGGGCAGCTACTCAATC+CGG 0.569169 8_3:-63245525 Msa1301280:CDS
AGAAGTAGCTGTGGAATCGT+TGG 0.570182 8_3:-63245203 Msa1301280:CDS
AATAGAAATGATAACATGAA+AGG 0.570329 8_3:+63244921 None:intergenic
GGTTCTGAAGGAAGAGGGAG+CGG 0.573272 8_3:+63247204 None:intergenic
GATTTGGTTCTGAAGGAAGA+GGG 0.577302 8_3:+63247199 None:intergenic
ACCTTTGCGAAGTTGAGGAA+GGG 0.578834 8_3:+63247172 None:intergenic
CCAGCCTGGCCGAAAGCCTG+TGG 0.586862 8_3:+63246431 None:intergenic
ATAACAACATTTCCAGTAGG+AGG 0.590217 8_3:+63245383 None:intergenic
ACGTTGAGAAAGATGTAAGC+CGG 0.592173 8_3:+63245506 None:intergenic
TCCCTTCCTCAACTTCGCAA+AGG 0.592473 8_3:-63247173 Msa1301280:intron
TAAGCTAGCTGAAGCAATTG+GGG 0.593302 8_3:-63246478 Msa1301280:CDS
TGAAATCACTCAGCAAGCAG+TGG 0.616011 8_3:-63247065 Msa1301280:CDS
CACGTTGGCAAGTGAATACG+TGG 0.616116 8_3:-63247366 None:intergenic
GTTAAAGTTGATGTCACAGA+GGG 0.630073 8_3:-63246507 Msa1301280:CDS
TCAAGTTGCAGAAGTAGCTG+TGG 0.632803 8_3:-63245212 Msa1301280:CDS
ATTGAGTAGCTGCCCCATAG+CGG 0.638328 8_3:+63245529 None:intergenic
AATTACACAATCATAAGACC+TGG 0.643894 8_3:-63245422 Msa1301280:CDS
TAGTCAATGGAGCCGCTATG+GGG 0.647798 8_3:-63245541 Msa1301280:CDS
TACACAATCATAAGACCTGG+AGG 0.652611 8_3:-63245419 Msa1301280:CDS
TCCATAACAACATTTCCAGT+AGG 0.656385 8_3:+63245380 None:intergenic
GGAATCGTTGGCTTATCCTG+AGG 0.676950 8_3:-63245191 Msa1301280:CDS
TAGTACTGGGAAAAGAATCG+TGG 0.683015 8_3:-63246993 Msa1301280:CDS
ACACAATCATAAGACCTGGA+GGG 0.693729 8_3:-63245418 Msa1301280:CDS
AAATGTTGTTATGGAGCCAG+AGG 0.716025 8_3:-63245372 Msa1301280:intron
TCTATACTAAACCTTCAATG+GGG 0.733031 8_3:+63244891 None:intergenic
AAATTAACAAACCTTCCATG+GGG 0.740909 8_3:+63246398 None:intergenic
GGTTAAAGTTGATGTCACAG+AGG 0.749642 8_3:-63246508 Msa1301280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTATGTTAGTA+TGG - chr8_3:63245832-63245851 Msa1301280:intron 10.0%
!! TATAACAAAATATTGTATAC+TGG + chr8_3:63246488-63246507 None:intergenic 15.0%
!!! ACAATATTTTGTTATAACAA+AGG - chr8_3:63246492-63246511 Msa1301280:CDS 15.0%
!!! CAATATTTTGTTATAACAAA+GGG - chr8_3:63246493-63246512 Msa1301280:CDS 15.0%
!!! AATTTAATTTTCTATGTATC+AGG - chr8_3:63246886-63246905 Msa1301280:intron 15.0%
!!! TTTTCTTTGTTTTTGTTAGA+TGG - chr8_3:63245057-63245076 Msa1301280:three_prime_UTR 20.0%
!!! ATAGTCCAATTTAAGATTAT+TGG - chr8_3:63245315-63245334 Msa1301280:intron 20.0%
!!! TAGTCCAATTTAAGATTATT+GGG - chr8_3:63245316-63245335 Msa1301280:intron 20.0%
!! TTTAAATCTAAACCAAGTTA+AGG + chr8_3:63245896-63245915 None:intergenic 20.0%
!!! TATAATCTGATGCTATTTAA+AGG + chr8_3:63246379-63246398 None:intergenic 20.0%
!!! CTCAATTTTTTATATGTTTG+CGG - chr8_3:63246849-63246868 Msa1301280:intron 20.0%
!! AATAGAAATGATAACATGAA+AGG + chr8_3:63247234-63247253 None:intergenic 20.0%
!! ATAGAATTTCAATACAAAAC+TGG - chr8_3:63247279-63247298 Msa1301280:exon 20.0%
! AAAAAATGCTAGTATTAACG+CGG + chr8_3:63245039-63245058 None:intergenic 25.0%
! AACTTACAAATTGAAGAGAT+GGG + chr8_3:63245264-63245283 None:intergenic 25.0%
! AAACTTACAAATTGAAGAGA+TGG + chr8_3:63245265-63245284 None:intergenic 25.0%
!! GGACTATTTTGCAATATAAT+GGG + chr8_3:63245302-63245321 None:intergenic 25.0%
!! TGGACTATTTTGCAATATAA+TGG + chr8_3:63245303-63245322 None:intergenic 25.0%
! TCAAATAAACCAATTCAAAC+AGG - chr8_3:63245563-63245582 Msa1301280:CDS 25.0%
! CAAATAAACCAATTCAAACA+GGG - chr8_3:63245564-63245583 Msa1301280:CDS 25.0%
! AAAATTAACAAACCTTCCAT+GGG + chr8_3:63245758-63245777 None:intergenic 25.0%
! AAAAATTAACAAACCTTCCA+TGG + chr8_3:63245759-63245778 None:intergenic 25.0%
! ATGGTAGTAGAATATTAGAA+TGG - chr8_3:63245789-63245808 Msa1301280:intron 25.0%
!!! AAAATGATCTCTAGAACTTA+CGG - chr8_3:63245921-63245940 Msa1301280:intron 25.0%
! ACTGTAACACTAATATAATC+AGG - chr8_3:63246105-63246124 Msa1301280:intron 25.0%
! TTTAGATTCTTCACTAGTAA+AGG - chr8_3:63246309-63246328 Msa1301280:intron 25.0%
! TTAGATTCTTCACTAGTAAA+GGG - chr8_3:63246310-63246329 Msa1301280:intron 25.0%
!!! ACAATTGTGTTTTGATTCAT+TGG + chr8_3:63246433-63246452 None:intergenic 25.0%
! ATGAATCAAAACACAATTGT+TGG - chr8_3:63246433-63246452 Msa1301280:CDS 25.0%
!!! ATAAGTTCCATTTTAGTCAA+TGG - chr8_3:63246598-63246617 Msa1301280:intron 25.0%
! GATATTTACTCACATTACTT+TGG + chr8_3:63247203-63247222 None:intergenic 25.0%
! TTCTATACTAAACCTTCAAT+GGG + chr8_3:63247265-63247284 None:intergenic 25.0%
! ATTCTATACTAAACCTTCAA+TGG + chr8_3:63247266-63247285 None:intergenic 25.0%
CTGGAAATTACAAGAAAACT+CGG - chr8_3:63244836-63244855 Msa1301280:three_prime_UTR 30.0%
!!! CTTTGTTTTTGTTAGATGGA+AGG - chr8_3:63245061-63245080 Msa1301280:three_prime_UTR 30.0%
! AAGAAGAAAGTTTTTGTTGC+TGG - chr8_3:63245127-63245146 Msa1301280:CDS 30.0%
CAGACCCAATAATCTTAAAT+TGG + chr8_3:63245323-63245342 None:intergenic 30.0%
TATAAACAATTTGCCCTGTT+TGG - chr8_3:63245343-63245362 Msa1301280:intron 30.0%
! TTAAGTTGTTGATCCAAACA+GGG + chr8_3:63245359-63245378 None:intergenic 30.0%
! ATTAAGTTGTTGATCCAAAC+AGG + chr8_3:63245360-63245379 None:intergenic 30.0%
GAATGACATGATGTGTAATT+TGG - chr8_3:63245597-63245616 Msa1301280:CDS 30.0%
AAATTAACAAACCTTCCATG+GGG + chr8_3:63245757-63245776 None:intergenic 30.0%
TAGAACTTACGGTGATTATT+GGG - chr8_3:63245932-63245951 Msa1301280:intron 30.0%
GTACAAGTTCTGTAAAAGTT+TGG - chr8_3:63245990-63246009 Msa1301280:intron 30.0%
!!! GTGTTTGATACTTTTGAAGT+AGG - chr8_3:63246012-63246031 Msa1301280:intron 30.0%
AGTAGGCTACATTATATACA+TGG - chr8_3:63246029-63246048 Msa1301280:intron 30.0%
ACTCTATCTAATATCCAGAA+TGG + chr8_3:63246195-63246214 None:intergenic 30.0%
ACTAGTGAAGAATCTAAACT+TGG + chr8_3:63246307-63246326 None:intergenic 30.0%
ATCAAAACACAATTGTTGGT+TGG - chr8_3:63246437-63246456 Msa1301280:CDS 30.0%
! TCAAAACACAATTGTTGGTT+GGG - chr8_3:63246438-63246457 Msa1301280:CDS 30.0%
AACAAAGGGATATATTATGC+AGG - chr8_3:63246507-63246526 Msa1301280:CDS 30.0%
!! ATTATGCAGGTTGACAATTT+TGG - chr8_3:63246520-63246539 Msa1301280:intron 30.0%
! TACATCTTTCTCAACGTTTT+TGG - chr8_3:63246652-63246671 Msa1301280:intron 30.0%
GAAAATCATATCAGGAAATC+TGG - chr8_3:63246703-63246722 Msa1301280:intron 30.0%
AATTACACAATCATAAGACC+TGG - chr8_3:63246730-63246749 Msa1301280:intron 30.0%
TCGAAATGTAATAGAAACTC+TGG + chr8_3:63246820-63246839 None:intergenic 30.0%
CCAAAAATCCAAGAAAAACA+AGG + chr8_3:63247118-63247137 None:intergenic 30.0%
!!! CCTTGTTTTTCTTGGATTTT+TGG - chr8_3:63247115-63247134 Msa1301280:intron 30.0%
TCTATACTAAACCTTCAATG+GGG + chr8_3:63247264-63247283 None:intergenic 30.0%
TGACGTGTTAAACCTAAATA+TGG - chr8_3:63247347-63247366 Msa1301280:five_prime_UTR 30.0%
TGATATCACGATCCATATTT+AGG + chr8_3:63247362-63247381 None:intergenic 30.0%
AATTTCCAGGTTACCAAACA+AGG + chr8_3:63244825-63244844 None:intergenic 35.0%
! CGAGTTTTCTTGTAATTTCC+AGG + chr8_3:63244838-63244857 None:intergenic 35.0%
TACAAATTGAAGAGATGGGT+TGG + chr8_3:63245260-63245279 None:intergenic 35.0%
AAGCTATCATGTAGAGCTTA+TGG - chr8_3:63245461-63245480 Msa1301280:CDS 35.0%
ATATGTGTGAGTTCATATGC+AGG - chr8_3:63245623-63245642 Msa1301280:CDS 35.0%
!! GTTAAAGTTGATGTCACAGA+GGG - chr8_3:63245645-63245664 Msa1301280:intron 35.0%
ATAAGCTAGCTGAAGCAATT+GGG - chr8_3:63245673-63245692 Msa1301280:intron 35.0%
CTAGAACTTACGGTGATTAT+TGG - chr8_3:63245931-63245950 Msa1301280:intron 35.0%
! TGGGTGCAACATATTTTCAT+TGG - chr8_3:63245951-63245970 Msa1301280:intron 35.0%
GGTTACTAAAACAAGAACCA+CGG + chr8_3:63246168-63246187 None:intergenic 35.0%
CTGGATATTAGATAGAGTTG+AGG - chr8_3:63246197-63246216 Msa1301280:intron 35.0%
TACAGGCAGAAAATCATATC+AGG - chr8_3:63246695-63246714 Msa1301280:intron 35.0%
ATAACAACATTTCCAGTAGG+AGG + chr8_3:63246772-63246791 None:intergenic 35.0%
TCCTACTGGAAATGTTGTTA+TGG - chr8_3:63246771-63246790 Msa1301280:intron 35.0%
TCCATAACAACATTTCCAGT+AGG + chr8_3:63246775-63246794 None:intergenic 35.0%
GGATATGGAACCTTCATAAA+GGG + chr8_3:63246915-63246934 None:intergenic 35.0%
TGGATATGGAACCTTCATAA+AGG + chr8_3:63246916-63246935 None:intergenic 35.0%
CAGATATTATCGCTGAACTA+TGG + chr8_3:63247059-63247078 None:intergenic 35.0%
! CAGCGATAATATCTGAGATT+CGG - chr8_3:63247064-63247083 Msa1301280:CDS 35.0%
! TAATATCTGAGATTCGGACT+TGG - chr8_3:63247070-63247089 Msa1301280:CDS 35.0%
TTGGTTGCAGATTAGCAAAT+CGG - chr8_3:63247089-63247108 Msa1301280:intron 35.0%
!!! ATCGGTTTCCTTGTTTTTCT+TGG - chr8_3:63247107-63247126 Msa1301280:intron 35.0%
! GATAACATGAAAGGTATGCT+TGG + chr8_3:63247225-63247244 None:intergenic 35.0%
TATTCTATCTTCCCCATTGA+AGG - chr8_3:63247250-63247269 Msa1301280:CDS 35.0%
TAGAAGAAAGCAAGAGATGA+TGG + chr8_3:63247319-63247338 None:intergenic 35.0%
! AGAAAACTCGGTTTTCACAG+TGG - chr8_3:63244848-63244867 Msa1301280:three_prime_UTR 40.0%
TCACAGTGGAAGAGCTTAAA+TGG - chr8_3:63244862-63244881 Msa1301280:three_prime_UTR 40.0%
GTAGGGTTTCTTGCAATAAG+AGG + chr8_3:63244893-63244912 None:intergenic 40.0%
! ATGGGAAAGTGTGGAATGTA+GGG + chr8_3:63244910-63244929 None:intergenic 40.0%
!! GATTTGGTTCTGAAGGAAGA+GGG + chr8_3:63244956-63244975 None:intergenic 40.0%
!! AGATTTGGTTCTGAAGGAAG+AGG + chr8_3:63244957-63244976 None:intergenic 40.0%
! TAGTACTGGGAAAAGAATCG+TGG - chr8_3:63245159-63245178 Msa1301280:CDS 40.0%
GTGGAACAGTTACTTGCAAA+GGG - chr8_3:63245178-63245197 Msa1301280:CDS 40.0%
!!! AAGGGTTTTGCTGTTAAAGC+TGG - chr8_3:63245196-63245215 Msa1301280:CDS 40.0%
!!! AGGGTTTTGCTGTTAAAGCT+GGG - chr8_3:63245197-63245216 Msa1301280:CDS 40.0%
!! CAAGTACTTCTGAGACTCTA+TGG + chr8_3:63245528-63245547 None:intergenic 40.0%
ATACACAGCCCTGTTTGAAT+TGG + chr8_3:63245575-63245594 None:intergenic 40.0%
!! GGTTAAAGTTGATGTCACAG+AGG - chr8_3:63245644-63245663 Msa1301280:intron 40.0%
GATAAGCTAGCTGAAGCAAT+TGG - chr8_3:63245672-63245691 Msa1301280:intron 40.0%
TAAGCTAGCTGAAGCAATTG+GGG - chr8_3:63245674-63245693 Msa1301280:intron 40.0%
! GTTAATGAGTGGCCTTAACT+TGG - chr8_3:63245881-63245900 Msa1301280:intron 40.0%
! TTGATTCCACATTTTCCCTC+CGG - chr8_3:63246068-63246087 Msa1301280:intron 40.0%
ACAGTTTAACACGCAGAAAC+CGG + chr8_3:63246090-63246109 None:intergenic 40.0%
TTTAGTAACCAACGCCATTC+TGG - chr8_3:63246178-63246197 Msa1301280:intron 40.0%
TCTAATATCCAGAATGGCGT+TGG + chr8_3:63246189-63246208 None:intergenic 40.0%
TAAACCTTGTTGAAGCATGC+AGG - chr8_3:63246548-63246567 Msa1301280:intron 40.0%
ACGTTGAGAAAGATGTAAGC+CGG + chr8_3:63246649-63246668 None:intergenic 40.0%
CACCTTAGTGGCAAAATTAC+AGG - chr8_3:63246678-63246697 Msa1301280:intron 40.0%
! TGCCTGTAATTTTGCCACTA+AGG + chr8_3:63246683-63246702 None:intergenic 40.0%
TACACAATCATAAGACCTGG+AGG - chr8_3:63246733-63246752 Msa1301280:intron 40.0%
ACACAATCATAAGACCTGGA+GGG - chr8_3:63246734-63246753 Msa1301280:intron 40.0%
TTGAAAAACGATCCTCCTAC+TGG - chr8_3:63246757-63246776 Msa1301280:intron 40.0%
AAATGTTGTTATGGAGCCAG+AGG - chr8_3:63246780-63246799 Msa1301280:intron 40.0%
GGAAATTTAAGCAACACCTC+TGG + chr8_3:63246799-63246818 None:intergenic 40.0%
TATCAGGACACCCTTTATGA+AGG - chr8_3:63246902-63246921 Msa1301280:CDS 40.0%
TGCAACTTGATCTCTGGATA+TGG + chr8_3:63246930-63246949 None:intergenic 40.0%
TACTTCTGCAACTTGATCTC+TGG + chr8_3:63246936-63246955 None:intergenic 40.0%
ACAACTTTGTAAGATGCCTC+AGG + chr8_3:63246980-63246999 None:intergenic 40.0%
! TGAGGCATCTTACAAAGTTG+TGG - chr8_3:63246979-63246998 Msa1301280:CDS 40.0%
CTATGGAACCAAAGAGATCA+TGG + chr8_3:63247042-63247061 None:intergenic 40.0%
! AGCAAGAGATGATGGCATAA+TGG + chr8_3:63247311-63247330 None:intergenic 40.0%
! GATGGGAAAGTGTGGAATGT+AGG + chr8_3:63244911-63244930 None:intergenic 45.0%
TGAATTGGTGAGTGTGGGAT+GGG + chr8_3:63244928-63244947 None:intergenic 45.0%
!! GGGAAGAGATTTGGTTCTGA+AGG + chr8_3:63244963-63244982 None:intergenic 45.0%
GTTGAGGAAGGGAAGAGATT+TGG + chr8_3:63244972-63244991 None:intergenic 45.0%
ACCTTTGCGAAGTTGAGGAA+GGG + chr8_3:63244983-63245002 None:intergenic 45.0%
TACCTTTGCGAAGTTGAGGA+AGG + chr8_3:63244984-63245003 None:intergenic 45.0%
GTGTTACCTTTGCGAAGTTG+AGG + chr8_3:63244988-63245007 None:intergenic 45.0%
TGAAATCACTCAGCAAGCAG+TGG - chr8_3:63245087-63245106 Msa1301280:exon 45.0%
! GTTTTTGTTGCTGGAGCTAC+TGG - chr8_3:63245136-63245155 Msa1301280:CDS 45.0%
CGTGGAACAGTTACTTGCAA+AGG - chr8_3:63245177-63245196 Msa1301280:CDS 45.0%
!!! GGGTTTTGCTGTTAAAGCTG+GGG - chr8_3:63245198-63245217 Msa1301280:CDS 45.0%
TAAAGCTGGGGTTAGAGACT+TGG - chr8_3:63245210-63245229 Msa1301280:CDS 45.0%
! TAGTTTGTGCCACAGGCTTT+CGG - chr8_3:63245712-63245731 Msa1301280:intron 45.0%
!! GTTTTGATATCAGCTGCCAC+TGG - chr8_3:63245859-63245878 Msa1301280:intron 45.0%
TAAGGCCACTCATTAACCAG+TGG + chr8_3:63245878-63245897 None:intergenic 45.0%
TTTAACACGCAGAAACCGGA+GGG + chr8_3:63246086-63246105 None:intergenic 45.0%
GATAGCTTTCATTCATGCCG+TGG - chr8_3:63246148-63246167 Msa1301280:intron 45.0%
! ATTGTTGGTTGGGACTTCAG+TGG - chr8_3:63246448-63246467 Msa1301280:CDS 45.0%
!! CTTCAGTGGATTATTCTCGC+TGG - chr8_3:63246462-63246481 Msa1301280:CDS 45.0%
CTTTCCTGCATGCTTCAACA+AGG + chr8_3:63246555-63246574 None:intergenic 45.0%
! AGCGGCTCCATTGACTAAAA+TGG + chr8_3:63246608-63246627 None:intergenic 45.0%
TTTAGTCAATGGAGCCGCTA+TGG - chr8_3:63246609-63246628 Msa1301280:intron 45.0%
TTAGTCAATGGAGCCGCTAT+GGG - chr8_3:63246610-63246629 Msa1301280:intron 45.0%
!! CGTTTTTGGACTCACCTTAG+TGG - chr8_3:63246666-63246685 Msa1301280:intron 45.0%
! TCAAGTTGCAGAAGTAGCTG+TGG - chr8_3:63246940-63246959 Msa1301280:CDS 45.0%
AGAAGTAGCTGTGGAATCGT+TGG - chr8_3:63246949-63246968 Msa1301280:CDS 45.0%
!!! TTAATTTTTTGTTTATATTA+TGG - chr8_3:63245770-63245789 Msa1301280:intron 5.0%
! CAGAGTTGTAGCGCCTTGTT+TGG - chr8_3:63244809-63244828 Msa1301280:three_prime_UTR 50.0%
!! TAGCGCCTTGTTTGGTAACC+TGG - chr8_3:63244817-63244836 Msa1301280:three_prime_UTR 50.0%
GTGAATTGGTGAGTGTGGGA+TGG + chr8_3:63244929-63244948 None:intergenic 50.0%
AGCGGTGAATTGGTGAGTGT+GGG + chr8_3:63244933-63244952 None:intergenic 50.0%
TCCCTTCCTCAACTTCGCAA+AGG - chr8_3:63244979-63244998 Msa1301280:three_prime_UTR 50.0%
CTGGAGCTACTGGTAGTACT+GGG - chr8_3:63245146-63245165 Msa1301280:CDS 50.0%
! GAAGCAGTAGTTTGTGCCAC+AGG - chr8_3:63245705-63245724 Msa1301280:intron 50.0%
! AGCTGCCACTGGTTAATGAG+TGG - chr8_3:63245870-63245889 Msa1301280:intron 50.0%
CAGAAACCGGAGGGAAAATG+TGG + chr8_3:63246077-63246096 None:intergenic 50.0%
GTTTAACACGCAGAAACCGG+AGG + chr8_3:63246087-63246106 None:intergenic 50.0%
TAGTCAATGGAGCCGCTATG+GGG - chr8_3:63246611-63246630 Msa1301280:intron 50.0%
ATTGAGTAGCTGCCCCATAG+CGG + chr8_3:63246626-63246645 None:intergenic 50.0%
TATGGGGCAGCTACTCAATC+CGG - chr8_3:63246627-63246646 Msa1301280:intron 50.0%
!! GGATCGTTTTTCAACCCTCC+AGG + chr8_3:63246751-63246770 None:intergenic 50.0%
!! GGAATCGTTGGCTTATCCTG+AGG - chr8_3:63246961-63246980 Msa1301280:CDS 50.0%
AGATCATGGTATGCGCGCTT+AGG + chr8_3:63247028-63247047 None:intergenic 50.0%
CGCGCATACCATGATCTCTT+TGG - chr8_3:63247031-63247050 Msa1301280:CDS 50.0%
GAGTGTGGGATGGGAAAGTG+TGG + chr8_3:63244919-63244938 None:intergenic 55.0%
GAGCGGTGAATTGGTGAGTG+TGG + chr8_3:63244934-63244953 None:intergenic 55.0%
AGGAAGAGGGAGCGGTGAAT+TGG + chr8_3:63244943-63244962 None:intergenic 55.0%
!! GGTTCTGAAGGAAGAGGGAG+CGG + chr8_3:63244951-63244970 None:intergenic 55.0%
GCTGGAGCTACTGGTAGTAC+TGG - chr8_3:63245145-63245164 Msa1301280:CDS 55.0%
! GGATTTGCTTGCCCCATGGA+AGG - chr8_3:63245743-63245762 Msa1301280:intron 55.0%
!! TATGCGCGCTTAGGAGCATC+AGG + chr8_3:63247019-63247038 None:intergenic 55.0%
! GCTGGGATTTGCTTGCCCCA+TGG - chr8_3:63245739-63245758 Msa1301280:intron 60.0%
TGTGCCACAGGCTTTCGGCC+AGG - chr8_3:63245717-63245736 Msa1301280:intron 65.0%
CACAGGCTTTCGGCCAGGCT+GGG - chr8_3:63245722-63245741 Msa1301280:intron 65.0%
GGGGCAAGCAAATCCCAGCC+TGG + chr8_3:63245738-63245757 None:intergenic 65.0%
CCAGCCTGGCCGAAAGCCTG+TGG + chr8_3:63245724-63245743 None:intergenic 70.0%
CCACAGGCTTTCGGCCAGGC+TGG - chr8_3:63245721-63245740 Msa1301280:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 63244791 63247383 63244791 ID=Msa1301280;Name=Msa1301280
chr8_3 mRNA 63244791 63247383 63244791 ID=Msa1301280-mRNA-1;Parent=Msa1301280;Name=Msa1301280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=90|1|1|1|1|1|5|311|292
chr8_3 exon 63244791 63245266 63244791 ID=Msa1301280-mRNA-1:exon:18907;Parent=Msa1301280-mRNA-1
chr8_3 exon 63245373 63245645 63245373 ID=Msa1301280-mRNA-1:exon:18906;Parent=Msa1301280-mRNA-1
chr8_3 exon 63246410 63246529 63246410 ID=Msa1301280-mRNA-1:exon:18905;Parent=Msa1301280-mRNA-1
chr8_3 exon 63246898 63247098 63246898 ID=Msa1301280-mRNA-1:exon:18904;Parent=Msa1301280-mRNA-1
chr8_3 exon 63247174 63247383 63247174 ID=Msa1301280-mRNA-1:exon:18903;Parent=Msa1301280-mRNA-1
chr8_3 five_prime_UTR 63247294 63247383 63247294 ID=Msa1301280-mRNA-1:five_prime_utr;Parent=Msa1301280-mRNA-1
chr8_3 CDS 63247174 63247293 63247174 ID=Msa1301280-mRNA-1:cds;Parent=Msa1301280-mRNA-1
chr8_3 CDS 63246898 63247098 63246898 ID=Msa1301280-mRNA-1:cds;Parent=Msa1301280-mRNA-1
chr8_3 CDS 63246410 63246529 63246410 ID=Msa1301280-mRNA-1:cds;Parent=Msa1301280-mRNA-1
chr8_3 CDS 63245373 63245645 63245373 ID=Msa1301280-mRNA-1:cds;Parent=Msa1301280-mRNA-1
chr8_3 CDS 63245102 63245266 63245102 ID=Msa1301280-mRNA-1:cds;Parent=Msa1301280-mRNA-1
chr8_3 three_prime_UTR 63244791 63245101 63244791 ID=Msa1301280-mRNA-1:three_prime_utr;Parent=Msa1301280-mRNA-1
Gene Sequence

>Msa1301280

ATGGCTTTTCCTCTTATTGCAAGAAACCCTACATTCCACACTTTCCCATCCCACACTCACCAATTCACCGCTCCCTCTTCCTTCAGAACCAAATCTCTTCCCTTCCTCAACTTCGCAAAGATGGAAGGAAGTGAAATCACTCAGCAAGCAGTGGATGATGATTTGAGTTTGAAGAAGAAAGTTTTTGTTGCTGGAGCTACTGGTAGTACTGGGAAAAGAATCGTGGAACAGTTACTTGCAAAGGGTTTTGCTGTTAAAGCTGGGGTTAGAGACTTGGACAAAGCAAAAACTTCACTTTCTGCCAACCCATCTCTTCAATTTGTTAAAGTTGATGTCACAGAGGGTTCTGATAAGCTAGCTGAAGCAATTGGGGATGATACAGAAGCAGTAGTTTGTGCCACAGGCTTTCGGCCAGGCTGGGATTTGCTTGCCCCATGGAAGGTTGACAATTTTGGCACTGTAAACCTTGTTGAAGCATGCAGGAAAGTCAACGTTAACAGATTCATTCTTATAAGTTCCATTTTAGTCAATGGAGCCGCTATGGGGCAGCTACTCAATCCGGCTTACATCTTTCTCAACGTTTTTGGACTCACCTTAGTGGCAAAATTACAGGCAGAAAATCATATCAGGAAATCTGGTATAAATTACACAATCATAAGACCTGGAGGGTTGAAAAACGATCCTCCTACTGGAAATGTTGTTATGGAGCCAGAGGACACCCTTTATGAAGGTTCCATATCCAGAGATCAAGTTGCAGAAGTAGCTGTGGAATCGTTGGCTTATCCTGAGGCATCTTACAAAGTTGTGGAGATAGTTGCTCGACCTGATGCTCCTAAGCGCGCATACCATGATCTCTTTGGTTCCATAGTTCAGCGATAA

Protein sequence

>Msa1301280

MAFPLIARNPTFHTFPSHTHQFTAPSSFRTKSLPFLNFAKMEGSEITQQAVDDDLSLKKKVFVAGATGSTGKRIVEQLLAKGFAVKAGVRDLDKAKTSLSANPSLQFVKVDVTEGSDKLAEAIGDDTEAVVCATGFRPGWDLLAPWKVDNFGTVNLVEACRKVNVNRFILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAENHIRKSGINYTIIRPGGLKNDPPTGNVVMEPEDTLYEGSISRDQVAEVAVESLAYPEASYKVVEIVARPDAPKRAYHDLFGSIVQR*