AlfalfaGEDB | Msa1206030

M. sativa cultivar zhongmu-4 / Msa1206030

KEGG: -
GO: -
PFAM: PF04616.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1206030	XP_003608530.1	93.376	468	27	3	24	490	1	465	0.0	881

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007810	Msa1206030	-0.800897	1.161874e-48	-8.615850e-47
Msa0011060	Msa1206030	-0.815166	1.062334e-51	-8.615850e-47
Msa0011100	Msa1206030	-0.807051	6.103610e-50	-8.615850e-47
Msa0017710	Msa1206030	0.812403	4.314225e-51	-8.615850e-47
Msa0030760	Msa1206030	-0.806962	6.376695e-50	-8.615850e-47
Msa0048410	Msa1206030	-0.816100	6.581799e-52	-8.615850e-47
Msa0049670	Msa1206030	-0.816790	4.611895e-52	-8.615850e-47
Msa0050320	Msa1206030	-0.806298	8.803328e-50	-8.615850e-47
Msa0056220	Msa1206030	-0.800743	1.249107e-48	-8.615850e-47
Msa0056230	Msa1206030	-0.801335	9.450859e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1206030	MtrunA17_Chr4g0054101	93.376	468	27	3	24	490	1	465	881
Msa1206030	MtrunA17_Chr4g0002031	92.623	366	23	3	24	388	1	363	673
Msa1206030	MtrunA17_Chr5g0401101	66.876	477	142	7	24	491	1	470	653

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1206030	AT3G49880.1	64.043	470	143	7	26	484	4	458	611
Msa1206030	AT5G67540.2	62.900	469	146	8	35	484	12	471	599
Msa1206030	AT5G67540.3	62.900	469	146	8	35	484	34	493	599
Msa1206030	AT5G67540.1	63.191	470	142	10	35	484	8	466	598

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Find 104 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAAAGTATGTGATG+TGG	0.618490	8_1:+62756086	Msa1206030:CDS
AAACCAGGAAACTTAGGTAA+AGG	0.536263	8_1:-62756571	None:intergenic
AAATGAGAAGGAAGAGAAGG+AGG	0.550677	8_1:-62754745	None:intergenic
AAATTTCAAATACTTATTAT+TGG	0.207042	8_1:+62755052	Msa1206030:CDS
AAGCAAGTCAATAACACCAT+TGG	0.559003	8_1:+62754837	Msa1206030:CDS
AATCCTATTCAAGCTCATGG+AGG	0.687704	8_1:+62755012	Msa1206030:CDS
AATGGAAACTGCCTTTGGGT+TGG	0.518583	8_1:+62756749	Msa1206030:CDS
AATTACGCAAAAGCTTCCGT+CGG	0.686419	8_1:+62756127	Msa1206030:CDS
ACAATTGGAAATCCATGTGT+TGG	0.635790	8_1:+62756493	Msa1206030:CDS
ACACAAAGGAACATATTACA+TGG	0.610656	8_1:+62756393	Msa1206030:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGCAACGAAAATTCGTAAT+TGG	-	chr8_1:62754610-62754629	None:intergenic	30.0%
ATTGATCCAATGAAGACTAT+AGG	+	chr8_1:62754925-62754944	Msa1206030:CDS	30.0%
TTGATCCAATGAAGACTATA+GGG	+	chr8_1:62754926-62754945	Msa1206030:CDS	30.0%
TGGTATGGTGAATATAAAGA+TGG	+	chr8_1:62755072-62755091	Msa1206030:CDS	30.0%
TATTATGAGCAAGGTAAGTA+GGG	-	chr8_1:62755098-62755117	None:intergenic	30.0%
TTATTATGAGCAAGGTAAGT+AGG	-	chr8_1:62755099-62755118	None:intergenic	30.0%
TACCTTGCTCATAATAACAA+AGG	+	chr8_1:62755102-62755121	Msa1206030:CDS	30.0%
CTTATCTACTGACATGAATA+CGG	+	chr8_1:62755217-62755236	Msa1206030:intron	30.0%
TTATCTACTGACATGAATAC+GGG	+	chr8_1:62755218-62755237	Msa1206030:intron	30.0%
AAAGCATATACACATGTCAT+AGG	-	chr8_1:62755275-62755294	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	62754360	62756786	62754360	ID=Msa1206030;Name=Msa1206030
chr8_1	mRNA	62754360	62756786	62754360	ID=Msa1206030-mRNA-1;Parent=Msa1206030;Name=Msa1206030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=36\|1\|0.66\|1\|1\|0.66\|3\|0\|491
chr8_1	exon	62754360	62754452	62754360	ID=Msa1206030-mRNA-1:exon:20319;Parent=Msa1206030-mRNA-1
chr8_1	exon	62754568	62755134	62754568	ID=Msa1206030-mRNA-1:exon:20320;Parent=Msa1206030-mRNA-1
chr8_1	exon	62755935	62756786	62755935	ID=Msa1206030-mRNA-1:exon:20321;Parent=Msa1206030-mRNA-1
chr8_1	five_prime_UTR	62754360	62754395	62754360	ID=Msa1206030-mRNA-1:five_prime_utr;Parent=Msa1206030-mRNA-1
chr8_1	CDS	62754396	62754452	62754396	ID=Msa1206030-mRNA-1:cds;Parent=Msa1206030-mRNA-1
chr8_1	CDS	62754568	62755134	62754568	ID=Msa1206030-mRNA-1:cds;Parent=Msa1206030-mRNA-1
chr8_1	CDS	62755935	62756786	62755935	ID=Msa1206030-mRNA-1:cds;Parent=Msa1206030-mRNA-1

Gene Sequence

>Msa1206030

ATGGTTGACTACTCAACAATAACACCAACTCATTCATTCTCTCCTATAAAGTTCCAGAGCTTGAGAAAAATGAGGATGAAGAATCTATACAAGAAACCAATTACGAATTTTCGTTGCAACGCTGGAGGTAGATATTGTTCTATGTCACTAGTAATAATATGGGGTTTATTAATCTTAGGATGCATATTTTTACTTCATCTATATTCTAATAACACCTCCTTCAATATCATTCATCCTCCTTCTCTTCCTTCTCATTTCCATCAACTCCAACAAGTTGAAAAGGAGAACTTCCAAATCCCCCCACCAAACAAAAAGAGGTCACCTCAAAGCAAGTCAATAACACCATTGGTTGATGAATTCTTGGATCAAGATTCATCACTTAGACATGTTTTCTTTCCTCATAAAACAAGTGCTATTGATCCAATGAAGACTATAGGGAAAGGAAATAATGATAGTTATAATTACTGCTACCCTGGGAGAATTTGGTTGGATACTGATGGAAATCCTATTCAAGCTCATGGAGGGTGCATTCTATTTGATGAAATTTCAAATACTTATTATTGGTATGGTGAATATAAAGATGGCCCTACTTACCTTGCTCATAATAACAAAGGACCTGCTCGTGTGGACATTATAGGAGTTGGTTGCTATTCTTCTAAGGATCTATGGACCTGGAAAAAAGAAGGTATTGTACTAGCAGCAGAGAAAACAGATAAAACACATGATCTGCACAAGTCCAATGTGCTTGAGAGACCAAAAGTTATTTACAATGAGAAAACAAGAAAGTATGTGATGTGGATGCATATCGACAACGCCAATTACGCAAAAGCTTCCGTCGGCATAGCATTCAGTGATACTCCTACCGGTCCATTCAAATACCTTGGTAGCCAAAGACCGCATGGATATCAAAGCCGGGACATGACACTTTTCAAAGATGAAGACAATGTTGCATATCTAATATACTCATCTGAAGAAAACAATGTAATGCACATTGGACCCTTGACTGAAGATTATCTCAATGTGACATCTGTCATGAAAAGAATTTTCGTCGGTCAGCGAAGAGAAGCGCCGGCTATGTTCAAACACAAAGGAACATATTACATGGTTACATCAGGTTGCACTGGATGGGCACCAAATGAAGCACTTGTTCATTCAGCTGAGACAATCTTAGGGACATGGGAAACAATTGGAAATCCATGTGTTGGTGGAAACAAAATGTTTCGAGTTTCGACTTTTCTGGCACAAAGTACTTTTGTGCTTCCTTTACCTAAGTTTCCTGGTTTGTTTATCTTCATGGCGGATAGATGGAATCCAAGTGAGTTAAGAGATTCAAGATATGTTTGGTTGCCTTTGATTGTTGATGGACATGAAGATCAAGCACTTCAATATGGTTTTGATAACACATTTTGGCCAAGAGTTTCTATCTATTGGCATAAAAAATGGAAACTGCCTTTGGGTTGGAACACATTCAAATGA

Protein sequence

>Msa1206030

MVDYSTITPTHSFSPIKFQSLRKMRMKNLYKKPITNFRCNAGGRYCSMSLVIIWGLLILGCIFLLHLYSNNTSFNIIHPPSLPSHFHQLQQVEKENFQIPPPNKKRSPQSKSITPLVDEFLDQDSSLRHVFFPHKTSAIDPMKTIGKGNNDSYNYCYPGRIWLDTDGNPIQAHGGCILFDEISNTYYWYGEYKDGPTYLAHNNKGPARVDIIGVGCYSSKDLWTWKKEGIVLAAEKTDKTHDLHKSNVLERPKVIYNEKTRKYVMWMHIDNANYAKASVGIAFSDTPTGPFKYLGSQRPHGYQSRDMTLFKDEDNVAYLIYSSEENNVMHIGPLTEDYLNVTSVMKRIFVGQRREAPAMFKHKGTYYMVTSGCTGWAPNEALVHSAETILGTWETIGNPCVGGNKMFRVSTFLAQSTFVLPLPKFPGLFIFMADRWNPSELRDSRYVWLPLIVDGHEDQALQYGFDNTFWPRVSIYWHKKWKLPLGWNTFK*