AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1104020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1104020 MtrunA17_Chr7g0234581 83.557 298 1 2 14 265 121 416 3.15e-166 466
Msa1104020 MtrunA17_Chr5g0398471 33.916 286 127 6 15 243 142 422 3.85e-39 141
Msa1104020 MtrunA17_Chr4g0062901 34.545 275 127 5 14 241 127 395 1.39e-33 125
Msa1104020 MtrunA17_Chr5g0398481 34.643 280 121 6 15 237 138 412 3.78e-33 125
Msa1104020 MtrunA17_Chr2g0314491 27.719 285 152 5 14 249 119 398 3.21e-22 94.7
Msa1104020 MtrunA17_Chr2g0314561 26.715 277 147 6 14 241 108 377 3.46e-21 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1104020 AT3G25410.1 66.316 285 48 2 14 252 136 418 4.41e-126 365
Msa1104020 AT4G22840.1 34.615 286 125 7 15 243 123 403 1.25e-40 145
Msa1104020 AT4G12030.4 35.789 285 121 7 19 246 37 316 3.13e-39 139
Msa1104020 AT4G12030.2 35.789 285 121 7 19 246 128 407 1.06e-38 140
Msa1104020 AT4G12030.1 35.612 278 117 7 26 246 1 273 1.43e-37 134
Msa1104020 AT4G12030.5 35.612 278 117 7 26 246 1 273 1.43e-37 134
Msa1104020 AT4G12030.3 35.612 278 117 7 26 246 1 273 1.43e-37 134
Msa1104020 AT2G26900.1 34.629 283 132 5 6 241 118 394 1.25e-34 129
Msa1104020 AT1G78560.1 28.788 264 136 5 27 243 135 393 1.70e-22 95.9

Find 149 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTTACAGCTTGTGTTTC+AGG 0.066583 7_3:+40581682 Msa1104020:CDS
AAATCTTCGTTTCTTAAATT+TGG 0.131700 7_3:+40580305 Msa1104020:five_prime_UTR
GCTATCATGTGTTTGATTAA+AGG 0.182397 7_3:+40580822 Msa1104020:five_prime_UTR
ACGATATATTGATTACAAAT+TGG 0.242979 7_3:-40581185 None:intergenic
CTTAGAATTTGCATGTCTTT+TGG 0.251970 7_3:+40580478 Msa1104020:five_prime_UTR
CTGCCTTCACCTTAGGATAT+TGG 0.269316 7_3:+40582341 Msa1104020:CDS
ACTTCTCGTTTCTTATTTGT+TGG 0.313744 7_3:+40583688 Msa1104020:exon
AAGCCTGCATAAAACATTCT+AGG 0.319366 7_3:-40581658 None:intergenic
ATGCAGAGCTCCACACTTGC+AGG 0.326442 7_3:+40583491 Msa1104020:CDS
TGCTCAACTTCTAAGTTTCA+TGG 0.330319 7_3:+40580251 Msa1104020:five_prime_UTR
ACGAAGATTTCCCTTCTCTA+TGG 0.343939 7_3:-40580292 None:intergenic
GTGTTGATTGCAAAGGCTTT+TGG 0.352496 7_3:+40581631 Msa1104020:CDS
TGTTGTAGCCATGGCTATAA+TGG 0.352603 7_3:+40583568 Msa1104020:CDS
GGAATGGAAGCCATTGAAAA+AGG 0.354321 7_3:-40580101 None:intergenic
TTTAGTTTATATGTATGTAT+TGG 0.355500 7_3:+40580622 Msa1104020:five_prime_UTR
CAAAAGACATGCAAATTCTA+AGG 0.374558 7_3:-40580477 None:intergenic
AGGGGATGGAGTATTATATT+AGG 0.382770 7_3:+40580974 Msa1104020:five_prime_UTR
TCTCAAACCTTCCATCCTTA+AGG 0.384028 7_3:+40582365 Msa1104020:CDS
CATGCCGCTGCCTTCACCTT+AGG 0.384534 7_3:+40582334 Msa1104020:CDS
AAGAGAGGTTGGAAAGATAG+AGG 0.386240 7_3:-40580164 None:intergenic
AACAATAACCGACGCAATAG+TGG 0.386749 7_3:-40581779 None:intergenic
TTGGATTCAGAATACAGATA+TGG 0.392238 7_3:-40581166 None:intergenic
GGCGGGATTATGTTGTCCAT+TGG 0.399421 7_3:+40581410 Msa1104020:CDS
GATGAAAGTGTAAGTGTTGT+TGG 0.406198 7_3:+40580332 Msa1104020:five_prime_UTR
ATACATATAAACTAAACAAA+AGG 0.409314 7_3:-40580615 None:intergenic
GGACAATGAATTTAATATAG+TGG 0.410351 7_3:+40583719 Msa1104020:three_prime_UTR
GTCAGAAGTGTTGGTGATAG+AGG 0.414204 7_3:+40580790 Msa1104020:five_prime_UTR
AACATAATCCCGCCAAGTGC+TGG 0.417557 7_3:-40581401 None:intergenic
GTTGTAGCCATGGCTATAAT+GGG 0.430006 7_3:+40583569 Msa1104020:CDS
GCTTCATAGTTAGGTGTTCA+AGG 0.433879 7_3:-40580706 None:intergenic
GCAGTAACAGCAACAACAAA+AGG 0.435076 7_3:-40580410 None:intergenic
GCGGGATTATGTTGTCCATT+GGG 0.435260 7_3:+40581411 Msa1104020:CDS
CGCGTCAGTGCTTCATAGTT+AGG 0.438938 7_3:-40580715 None:intergenic
GGCAGGAAGAACAGGTGAGC+AGG 0.444537 7_3:+40583447 Msa1104020:intron
CAAATAAGAAACGAGAAGTT+AGG 0.445610 7_3:-40583684 None:intergenic
GGGAGTGAATGGAGAGAAAA+CGG 0.449174 7_3:-40580123 None:intergenic
TTGTCACAGGCAGGAAGAAC+AGG 0.451789 7_3:+40583439 Msa1104020:intron
TGCTTATAATTGAGAGGGGA+TGG 0.460666 7_3:+40580960 Msa1104020:five_prime_UTR
TGAGACCCTTTGAAGGGAAA+AGG 0.463191 7_3:-40580201 None:intergenic
AGTTTCATGGTGGAAGAGTT+GGG 0.463551 7_3:+40580264 Msa1104020:five_prime_UTR
CACCCTTTGAGACCCTTTGA+AGG 0.464243 7_3:-40580208 None:intergenic
TCTTATTTGTTGGCATTCGT+TGG 0.467302 7_3:+40583698 Msa1104020:three_prime_UTR
AAGTTTCATGGTGGAAGAGT+TGG 0.474732 7_3:+40580263 Msa1104020:five_prime_UTR
AGCGAGTGCGTAAGAGAGGT+TGG 0.474946 7_3:-40580175 None:intergenic
TTCCCTTCAAAGGGTCTCAA+AGG 0.483931 7_3:+40580205 Msa1104020:five_prime_UTR
CGCCTGACAAAATTTGACTT+CGG 0.484249 7_3:-40582276 None:intergenic
ATGCAAGCTTTATAAGCAAA+GGG 0.488212 7_3:+40581722 Msa1104020:CDS
TACATATAAACTAAACAAAA+GGG 0.491989 7_3:-40580614 None:intergenic
CTGACTATCTGAACGCAGGC+AGG 0.493425 7_3:+40581124 Msa1104020:five_prime_UTR
GGTGTGAAGAGGAATGAAGG+GGG 0.496782 7_3:-40580070 None:intergenic
TCCCTTCAAAGGGTCTCAAA+GGG 0.498763 7_3:+40580206 Msa1104020:five_prime_UTR
CTCCTGAAACACAAGCTGTA+AGG 0.500140 7_3:-40581684 None:intergenic
CAGAGATGGCTAGGAAATGT+AGG 0.501301 7_3:+40583751 Msa1104020:three_prime_UTR
AATCCAATGGAAAGTGGTAA+AGG 0.501425 7_3:-40581574 None:intergenic
AATGAGAACAAATGAAAGTA+GGG 0.504121 7_3:-40579978 None:intergenic
AAGTGTGGAGCTCTGCATTC+CGG 0.505559 7_3:-40583486 None:intergenic
TATATTAGGCCCATCTGCTA+TGG 0.507799 7_3:+40580988 Msa1104020:five_prime_UTR
TTAGGCCTCAAAAGCAGAAT+CGG 0.509487 7_3:-40583666 None:intergenic
GTCAGGCGAAGGTCTTCGAT+TGG 0.511001 7_3:+40582291 Msa1104020:CDS
GTAAGTGTTGTTGGTGGTGA+TGG 0.511520 7_3:+40580341 Msa1104020:five_prime_UTR
GTGAAGGTAATGATGACAAC+AGG 0.512253 7_3:-40583637 None:intergenic
TATATGCTCCAGCACTTGGC+GGG 0.513534 7_3:+40581393 Msa1104020:CDS
GGGGTGTGAAGAGGAATGAA+GGG 0.513980 7_3:-40580072 None:intergenic
TGCAAGAAGGCCTGCAAGTG+TGG 0.515778 7_3:-40583501 None:intergenic
AAGATTGAAGAAGAAGATGA+GGG 0.516460 7_3:-40580042 None:intergenic
TGCATGTTCTGTTGTAGCCA+TGG 0.517184 7_3:+40583559 Msa1104020:CDS
AGGCCTTTACCACTTTCCAT+TGG 0.519903 7_3:+40581571 Msa1104020:intron
GAATGAGAACAAATGAAAGT+AGG 0.520361 7_3:-40579979 None:intergenic
GAAGATTGAAGAAGAAGATG+AGG 0.520443 7_3:-40580043 None:intergenic
GGTCGAAGAATAGATACAAC+TGG 0.521194 7_3:-40582190 None:intergenic
GATAGTCAGCACATTGATCA+AGG 0.522657 7_3:-40581110 None:intergenic
GGGTGTGAAGAGGAATGAAG+GGG 0.525186 7_3:-40580071 None:intergenic
GTTAGTTGACACATATAGAA+AGG 0.525650 7_3:+40581306 Msa1104020:five_prime_UTR
GCAATCAACACACCAAGTAC+AGG 0.525650 7_3:-40581619 None:intergenic
ATACTCTGCATTTGCATGGT+TGG 0.526012 7_3:+40581017 Msa1104020:five_prime_UTR
AAAATTTGCTTATAATTGAG+AGG 0.526490 7_3:+40580954 Msa1104020:five_prime_UTR
TTTCAAGTGTATAGGTTAGT+CGG 0.526872 7_3:+40583785 Msa1104020:three_prime_UTR
TTCAATATAATCACGTGTAT+CGG 0.527222 7_3:+40580760 Msa1104020:five_prime_UTR
TTATTGAGATTATTGGGGAG+TGG 0.528895 7_3:+40580668 Msa1104020:five_prime_UTR
GGAACCCCACCAAGTAAAAG+TGG 0.532912 7_3:-40580456 None:intergenic
TCAGAAGTGTTGGTGATAGA+GGG 0.535761 7_3:+40580791 Msa1104020:five_prime_UTR
GAGTTATATGCTCCAGCACT+TGG 0.538754 7_3:+40581389 Msa1104020:CDS
TTGGTACATCTCTGTAGCTG+TGG 0.539314 7_3:+40581036 Msa1104020:five_prime_UTR
GCTTGTAAGAACAATGCATA+GGG 0.539976 7_3:-40581752 None:intergenic
ACTTGGTGTGTTGATTGCAA+AGG 0.540051 7_3:+40581624 Msa1104020:CDS
TGCAAGAGCAAAATCTTCCA+TGG 0.540161 7_3:-40581444 None:intergenic
GTACAAATCATAGCAACAAA+GGG 0.540347 7_3:-40582220 None:intergenic
GTTGGGTTTAACCATAGAGA+AGG 0.541631 7_3:+40580281 Msa1104020:five_prime_UTR
ATTATGTTGTCCATTGGGAT+AGG 0.543584 7_3:+40581416 Msa1104020:CDS
ATAGCAACAAAGGGCATCAC+AGG 0.544933 7_3:-40582211 None:intergenic
TATGCAAGCTTTATAAGCAA+AGG 0.546167 7_3:+40581721 Msa1104020:CDS
CAGCATACCTTAAGGATGGA+AGG 0.547119 7_3:-40582372 None:intergenic
GTGTGAAGAGGAATGAAGGG+GGG 0.549825 7_3:-40580069 None:intergenic
AAATTTGCTTATAATTGAGA+GGG 0.552289 7_3:+40580955 Msa1104020:five_prime_UTR
GCGGCATGAAATATTAATAC+CGG 0.553644 7_3:-40582319 None:intergenic
ACCCTTTGAGACCCTTTGAA+GGG 0.553739 7_3:-40580207 None:intergenic
TTATATGCTCCAGCACTTGG+CGG 0.558780 7_3:+40581392 Msa1104020:CDS
AGGTCTTCGATTGGTTGCTC+CGG 0.561129 7_3:+40582300 Msa1104020:CDS
TACTAATATCAGAGATGGCT+AGG 0.561824 7_3:+40583742 Msa1104020:three_prime_UTR
GTGATGTTAGTGAAAGAGAT+TGG 0.563192 7_3:+40580363 Msa1104020:five_prime_UTR
GCAATAAATCCAATGGAAAG+TGG 0.566166 7_3:-40581580 None:intergenic
GTATTCATTTCCATAGCAGA+TGG 0.566578 7_3:-40580998 None:intergenic
CATTGGGATAGGACTATCCA+TGG 0.567638 7_3:+40581427 Msa1104020:CDS
ATTTGTACTTCATTGTGCAT+TGG 0.567873 7_3:+40582235 Msa1104020:CDS
AAGCTATACCACTATTGCGT+CGG 0.568809 7_3:+40581771 Msa1104020:CDS
TGGTACATCTCTGTAGCTGT+GGG 0.569835 7_3:+40581037 Msa1104020:five_prime_UTR
GAATGGAGAGAAAACGGGAA+TGG 0.572060 7_3:-40580117 None:intergenic
AAGACAGCATACCTTAAGGA+TGG 0.572336 7_3:-40582376 None:intergenic
GGAGTGAATGGAGAGAAAAC+GGG 0.572507 7_3:-40580122 None:intergenic
GAAGAGCGAGTGCGTAAGAG+AGG 0.579231 7_3:-40580179 None:intergenic
AGGACAATTTCATTATGCAC+CGG 0.579651 7_3:+40583467 Msa1104020:CDS
TGACTTCGGTTTATAGCAAG+AGG 0.580840 7_3:-40582262 None:intergenic
TTGGGTTTAACCATAGAGAA+GGG 0.583275 7_3:+40580282 Msa1104020:five_prime_UTR
ATATTGCGCAATAAATCCAA+TGG 0.586085 7_3:-40581587 None:intergenic
AATCAAACACATGATAGCCT+AGG 0.589727 7_3:-40580817 None:intergenic
AGTGGTACTAATATCAGAGA+TGG 0.590087 7_3:+40583737 Msa1104020:three_prime_UTR
GTTTGAGAACCAATATCCTA+AGG 0.590940 7_3:-40582350 None:intergenic
TAGTAGCAAGTCTATGTACA+AGG 0.596487 7_3:-40583924 None:intergenic
CATGGATAGTCCTATCCCAA+TGG 0.597745 7_3:-40581426 None:intergenic
TATGTATTGAAACCTGTACT+TGG 0.601904 7_3:+40581607 Msa1104020:CDS
GGTGTCAATGTCAGAAGTGT+TGG 0.602758 7_3:+40580781 Msa1104020:five_prime_UTR
GCAGAATCGGTTCTGAGTGA+AGG 0.602984 7_3:-40583653 None:intergenic
ATATCCTAAGGTGAAGGCAG+CGG 0.604202 7_3:-40582338 None:intergenic
TTGTAAGATAGTACACTCTC+CGG 0.606327 7_3:+40580846 Msa1104020:five_prime_UTR
CTTCAAAGGGTCTCAAAGGG+TGG 0.608490 7_3:+40580209 Msa1104020:five_prime_UTR
AGTACAAATCATAGCAACAA+AGG 0.608493 7_3:-40582221 None:intergenic
GAACCAATATCCTAAGGTGA+AGG 0.613291 7_3:-40582344 None:intergenic
TATTCATTTCCATAGCAGAT+GGG 0.616204 7_3:-40580997 None:intergenic
AATTTGCTTATAATTGAGAG+GGG 0.617343 7_3:+40580956 Msa1104020:five_prime_UTR
AGCTTGTAAGAACAATGCAT+AGG 0.618652 7_3:-40581753 None:intergenic
ACAGAGACCCATTATAGCCA+TGG 0.620465 7_3:-40583576 None:intergenic
TTGACACATATAGAAAGGAA+TGG 0.621114 7_3:+40581311 Msa1104020:five_prime_UTR
ATGAATACTCTGCATTTGCA+TGG 0.623487 7_3:+40581013 Msa1104020:five_prime_UTR
CCCCACCAAGTAAAAGTGGA+AGG 0.630594 7_3:-40580452 None:intergenic
GACTTCGGTTTATAGCAAGA+GGG 0.640397 7_3:-40582261 None:intergenic
TGACTATCTGAACGCAGGCA+GGG 0.646686 7_3:+40581125 Msa1104020:five_prime_UTR
TTGGTGATAGAGGGATACCT+AGG 0.647907 7_3:+40580800 Msa1104020:five_prime_UTR
ATGGCTACAACAGAACATGC+AGG 0.649051 7_3:-40583557 None:intergenic
AGATTGAAGAAGAAGATGAG+GGG 0.662587 7_3:-40580041 None:intergenic
TGTGCTGACTATCTGAACGC+AGG 0.675659 7_3:+40581120 Msa1104020:five_prime_UTR
GTGATGATAGACACATGGTT+GGG 0.677902 7_3:-40579944 None:intergenic
GAAAGTGTAAGTGTTGTTGG+TGG 0.690047 7_3:+40580335 Msa1104020:five_prime_UTR
TAACACTGTATACACGACCA+AGG 0.698470 7_3:+40583823 Msa1104020:three_prime_UTR
AGTGATGATAGACACATGGT+TGG 0.701136 7_3:-40579945 None:intergenic
TGCAAGCTTTATAAGCAAAG+GGG 0.704367 7_3:+40581723 Msa1104020:CDS
TCAACTTCTAAGTTTCATGG+TGG 0.738174 7_3:+40580254 Msa1104020:five_prime_UTR
GCTACAACAGAACATGCAGG+AGG 0.738196 7_3:-40583554 None:intergenic
GATGAGTGATGATAGACACA+TGG 0.768012 7_3:-40579949 None:intergenic
AAAATGTATTCATTGTAACG+CGG 0.769348 7_3:+40583846 Msa1104020:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGAATTATTTCATTTTA+TGG - chr7_3:40580747-40580766 None:intergenic 10.0%
!! TCAATTATATTTAGAAAAAA+AGG + chr7_3:40583008-40583027 Msa1104020:intron 10.0%
!! ATATAGTAGAAAATAAAATA+CGG - chr7_3:40583386-40583405 None:intergenic 10.0%
!!! ATTAATTAACACTTGTTTTA+AGG + chr7_3:40580519-40580538 Msa1104020:five_prime_UTR 15.0%
!! TACATATAAACTAAACAAAA+GGG - chr7_3:40580617-40580636 None:intergenic 15.0%
!! ATACATATAAACTAAACAAA+AGG - chr7_3:40580618-40580637 None:intergenic 15.0%
!!! TTTAGTTTATATGTATGTAT+TGG + chr7_3:40580622-40580641 Msa1104020:five_prime_UTR 15.0%
!!! TTGTTTTTTATTGAGATTAT+TGG + chr7_3:40580661-40580680 Msa1104020:five_prime_UTR 15.0%
!!! TGTTTTTTATTGAGATTATT+GGG + chr7_3:40580662-40580681 Msa1104020:five_prime_UTR 15.0%
!!! TAAGCAAATTTTACTATTTT+AGG - chr7_3:40580946-40580965 None:intergenic 15.0%
!! TAAAAAAAGTTGAATAACTT+TGG - chr7_3:40581215-40581234 None:intergenic 15.0%
!!! TTAATTTGTCAAAATTTTAC+AGG + chr7_3:40582117-40582136 Msa1104020:intron 15.0%
!! AAATATATATCTTTCCTATA+AGG + chr7_3:40582764-40582783 Msa1104020:intron 15.0%
!! TATATATAATTGTTCCTTAT+AGG - chr7_3:40582781-40582800 None:intergenic 15.0%
!!! GGTTTTTCTATTTTTAAAAT+AGG + chr7_3:40583126-40583145 Msa1104020:intron 15.0%
!!! TAGCAAAAAACAAAATTTTA+GGG - chr7_3:40583192-40583211 None:intergenic 15.0%
!!! ATAGCAAAAAACAAAATTTT+AGG - chr7_3:40583193-40583212 None:intergenic 15.0%
!! AAATCTTCGTTTCTTAAATT+TGG + chr7_3:40580305-40580324 Msa1104020:five_prime_UTR 20.0%
!!! GTTTTTTATTGAGATTATTG+GGG + chr7_3:40580663-40580682 Msa1104020:five_prime_UTR 20.0%
!!! AAAATTTGCTTATAATTGAG+AGG + chr7_3:40580954-40580973 Msa1104020:five_prime_UTR 20.0%
!!! AAATTTGCTTATAATTGAGA+GGG + chr7_3:40580955-40580974 Msa1104020:five_prime_UTR 20.0%
!!! ACGATATATTGATTACAAAT+TGG - chr7_3:40581188-40581207 None:intergenic 20.0%
!! ATTAGTTATGTTTGTTCATT+TGG + chr7_3:40582458-40582477 Msa1104020:intron 20.0%
!! GTTAATTTACAACATTCAAT+AGG - chr7_3:40582627-40582646 None:intergenic 20.0%
!!! TATTTGACATTGCATATTTT+GGG - chr7_3:40582937-40582956 None:intergenic 20.0%
!! ATTTAGTACATACAGAAAAA+TGG + chr7_3:40583034-40583053 Msa1104020:intron 20.0%
!!! TTTTTAAAATAGGTCCAATT+TGG + chr7_3:40583136-40583155 Msa1104020:intron 20.0%
!!! ACAAAAAATTTCAAGTGTAT+AGG + chr7_3:40583777-40583796 Msa1104020:three_prime_UTR 20.0%
! AATGAGAACAAATGAAAGTA+GGG - chr7_3:40579981-40580000 None:intergenic 25.0%
! TTCAATATAATCACGTGTAT+CGG + chr7_3:40580760-40580779 Msa1104020:five_prime_UTR 25.0%
!! AATTTGCTTATAATTGAGAG+GGG + chr7_3:40580956-40580975 Msa1104020:five_prime_UTR 25.0%
!!! TTTGCCTGTTTTTCAATAAA+TGG + chr7_3:40581501-40581520 Msa1104020:intron 25.0%
! TACTCCATTTATTGAAAAAC+AGG - chr7_3:40581508-40581527 None:intergenic 25.0%
!!! TAATGAGTATTGAAAGAAGT+TGG - chr7_3:40581533-40581552 None:intergenic 25.0%
!!! TATTTTGATAATTCTGTTGC+AGG + chr7_3:40581551-40581570 Msa1104020:intron 25.0%
!! TCAATATTACAGGTAAGTTT+TGG + chr7_3:40581868-40581887 Msa1104020:intron 25.0%
! TACATTTGATAAAGAGCTTT+AGG + chr7_3:40582563-40582582 Msa1104020:intron 25.0%
! ACATTTGATAAAGAGCTTTA+GGG + chr7_3:40582564-40582583 Msa1104020:intron 25.0%
! TATATTCTTACTACTGAGAT+TGG + chr7_3:40582843-40582862 Msa1104020:intron 25.0%
! ATGATAACACTTTCCAAAAT+TGG - chr7_3:40582879-40582898 None:intergenic 25.0%
!! CTATTTGACATTGCATATTT+TGG - chr7_3:40582938-40582957 None:intergenic 25.0%
! ATAGCAATGCTATAACATAA+CGG - chr7_3:40583274-40583293 None:intergenic 25.0%
! TCAAATAAATACTTTGTCAC+AGG + chr7_3:40583426-40583445 Msa1104020:intron 25.0%
! GGACAATGAATTTAATATAG+TGG + chr7_3:40583719-40583738 Msa1104020:three_prime_UTR 25.0%
!! TACAATGAATACATTTTCCT+TGG - chr7_3:40583843-40583862 None:intergenic 25.0%
! AAAATGTATTCATTGTAACG+CGG + chr7_3:40583846-40583865 Msa1104020:three_prime_UTR 25.0%
GAATGAGAACAAATGAAAGT+AGG - chr7_3:40579982-40580001 None:intergenic 30.0%
AAGATTGAAGAAGAAGATGA+GGG - chr7_3:40580045-40580064 None:intergenic 30.0%
!! GGTTTATGCTTTTGTTTCAT+GGG - chr7_3:40580146-40580165 None:intergenic 30.0%
!! AGGTTTATGCTTTTGTTTCA+TGG - chr7_3:40580147-40580166 None:intergenic 30.0%
CAAAAGACATGCAAATTCTA+AGG - chr7_3:40580480-40580499 None:intergenic 30.0%
! CTTAGAATTTGCATGTCTTT+TGG + chr7_3:40580478-40580497 Msa1104020:five_prime_UTR 30.0%
!!! ATTTGCATGTCTTTTGGTTT+TGG + chr7_3:40580484-40580503 Msa1104020:five_prime_UTR 30.0%
GCTATCATGTGTTTGATTAA+AGG + chr7_3:40580822-40580841 Msa1104020:five_prime_UTR 30.0%
TATTCATTTCCATAGCAGAT+GGG - chr7_3:40581000-40581019 None:intergenic 30.0%
TTGGATTCAGAATACAGATA+TGG - chr7_3:40581169-40581188 None:intergenic 30.0%
GTTAGTTGACACATATAGAA+AGG + chr7_3:40581306-40581325 Msa1104020:five_prime_UTR 30.0%
TTGACACATATAGAAAGGAA+TGG + chr7_3:40581311-40581330 Msa1104020:five_prime_UTR 30.0%
!!! TTCAACTTGTTTTACTGATC+AGG + chr7_3:40581357-40581376 Msa1104020:CDS 30.0%
!!! TCAACTTGTTTTACTGATCA+GGG + chr7_3:40581358-40581377 Msa1104020:CDS 30.0%
! ATTTTGCTCTTGCATTCAAA+AGG + chr7_3:40581453-40581472 Msa1104020:CDS 30.0%
ATATTGCGCAATAAATCCAA+TGG - chr7_3:40581590-40581609 None:intergenic 30.0%
TATGTATTGAAACCTGTACT+TGG + chr7_3:40581607-40581626 Msa1104020:CDS 30.0%
! TATGCAAGCTTTATAAGCAA+AGG + chr7_3:40581721-40581740 Msa1104020:CDS 30.0%
! ATGCAAGCTTTATAAGCAAA+GGG + chr7_3:40581722-40581741 Msa1104020:CDS 30.0%
ATTGTTACGCCTTTATTAAC+CGG + chr7_3:40581796-40581815 Msa1104020:intron 30.0%
ATTAGAAGACCGGTTAATAA+AGG - chr7_3:40581808-40581827 None:intergenic 30.0%
TTATTAACCGGTCTTCTAAT+TGG + chr7_3:40581808-40581827 Msa1104020:intron 30.0%
!! CTGTAATATTGACTTTGACA+TGG - chr7_3:40581860-40581879 None:intergenic 30.0%
CATGTCAAAGTCAATATTAC+AGG + chr7_3:40581858-40581877 Msa1104020:intron 30.0%
! TATTAAGCGTTGTCAAATAG+CGG + chr7_3:40582004-40582023 Msa1104020:intron 30.0%
TCTGACATTAAACCAAATTC+AGG - chr7_3:40582097-40582116 None:intergenic 30.0%
GTACAAATCATAGCAACAAA+GGG - chr7_3:40582223-40582242 None:intergenic 30.0%
AGTACAAATCATAGCAACAA+AGG - chr7_3:40582224-40582243 None:intergenic 30.0%
ATTTGTACTTCATTGTGCAT+TGG + chr7_3:40582235-40582254 Msa1104020:CDS 30.0%
AGTTATGTTTGTTCATTTGG+TGG + chr7_3:40582461-40582480 Msa1104020:intron 30.0%
TCACATCTCTGATACTAAAA+TGG - chr7_3:40582720-40582739 None:intergenic 30.0%
TGTTATCATGTTATCAAGAG+TGG + chr7_3:40582890-40582909 Msa1104020:intron 30.0%
GATTTATTTCAACTGCTATG+TGG - chr7_3:40582990-40583009 None:intergenic 30.0%
CATACAGAAAAATGGAATGT+AGG + chr7_3:40583042-40583061 Msa1104020:intron 30.0%
!! TGAATATATCATTGACTCTC+TGG + chr7_3:40583105-40583124 Msa1104020:intron 30.0%
TTGCAAACAAAAGTTAGTAC+AGG - chr7_3:40583338-40583357 None:intergenic 30.0%
! CTTCTTGCAACTCAATTTTT+GGG + chr7_3:40583515-40583534 Msa1104020:CDS 30.0%
CAAATAAGAAACGAGAAGTT+AGG - chr7_3:40583687-40583706 None:intergenic 30.0%
! ACTTCTCGTTTCTTATTTGT+TGG + chr7_3:40583688-40583707 Msa1104020:exon 30.0%
! TTTCAAGTGTATAGGTTAGT+CGG + chr7_3:40583785-40583804 Msa1104020:three_prime_UTR 30.0%
AGATTGAAGAAGAAGATGAG+GGG - chr7_3:40580044-40580063 None:intergenic 35.0%
GAAGATTGAAGAAGAAGATG+AGG - chr7_3:40580046-40580065 None:intergenic 35.0%
!! TTTTGTTTCATGGGAGTGAA+TGG - chr7_3:40580137-40580156 None:intergenic 35.0%
TGCTCAACTTCTAAGTTTCA+TGG + chr7_3:40580251-40580270 Msa1104020:five_prime_UTR 35.0%
TCAACTTCTAAGTTTCATGG+TGG + chr7_3:40580254-40580273 Msa1104020:five_prime_UTR 35.0%
TTGGGTTTAACCATAGAGAA+GGG + chr7_3:40580282-40580301 Msa1104020:five_prime_UTR 35.0%
! GATGAAAGTGTAAGTGTTGT+TGG + chr7_3:40580332-40580351 Msa1104020:five_prime_UTR 35.0%
GTGATGTTAGTGAAAGAGAT+TGG + chr7_3:40580363-40580382 Msa1104020:five_prime_UTR 35.0%
TTATTGAGATTATTGGGGAG+TGG + chr7_3:40580668-40580687 Msa1104020:five_prime_UTR 35.0%
AATCAAACACATGATAGCCT+AGG - chr7_3:40580820-40580839 None:intergenic 35.0%
TTGTAAGATAGTACACTCTC+CGG + chr7_3:40580846-40580865 Msa1104020:five_prime_UTR 35.0%
! TTTTTGCTTATAAGCGAGAC+CGG - chr7_3:40580868-40580887 None:intergenic 35.0%
! AGGGGATGGAGTATTATATT+AGG + chr7_3:40580974-40580993 Msa1104020:five_prime_UTR 35.0%
GTATTCATTTCCATAGCAGA+TGG - chr7_3:40581001-40581020 None:intergenic 35.0%
ATGAATACTCTGCATTTGCA+TGG + chr7_3:40581013-40581032 Msa1104020:five_prime_UTR 35.0%
ATTATGTTGTCCATTGGGAT+AGG + chr7_3:40581416-40581435 Msa1104020:CDS 35.0%
AATCCAATGGAAAGTGGTAA+AGG - chr7_3:40581577-40581596 None:intergenic 35.0%
GCAATAAATCCAATGGAAAG+TGG - chr7_3:40581583-40581602 None:intergenic 35.0%
! TTGCCTAGAATGTTTTATGC+AGG + chr7_3:40581655-40581674 Msa1104020:CDS 35.0%
AAGCCTGCATAAAACATTCT+AGG - chr7_3:40581661-40581680 None:intergenic 35.0%
! TGCAAGCTTTATAAGCAAAG+GGG + chr7_3:40581723-40581742 Msa1104020:CDS 35.0%
GCTTGTAAGAACAATGCATA+GGG - chr7_3:40581755-40581774 None:intergenic 35.0%
AGCTTGTAAGAACAATGCAT+AGG - chr7_3:40581756-40581775 None:intergenic 35.0%
AACAGATCCAATTAGAAGAC+CGG - chr7_3:40581818-40581837 None:intergenic 35.0%
GAATCAGTGTTGTCAAATAG+AGG + chr7_3:40581916-40581935 Msa1104020:intron 35.0%
! AACCGAAGTCAAATTTTGTC+AGG + chr7_3:40582274-40582293 Msa1104020:CDS 35.0%
GCGGCATGAAATATTAATAC+CGG - chr7_3:40582322-40582341 None:intergenic 35.0%
GTTTGAGAACCAATATCCTA+AGG - chr7_3:40582353-40582372 None:intergenic 35.0%
TCTAAAGACAGCATACCTTA+AGG - chr7_3:40582383-40582402 None:intergenic 35.0%
AGCTGAATTATCTACTGACA+AGG - chr7_3:40582487-40582506 None:intergenic 35.0%
TCAGTAGATAATTCAGCTTC+AGG + chr7_3:40582489-40582508 Msa1104020:intron 35.0%
! TTTTTCCTTCTCATTCTTGC+TGG + chr7_3:40582653-40582672 Msa1104020:intron 35.0%
! TTTTCCTTCTCATTCTTGCT+GGG + chr7_3:40582654-40582673 Msa1104020:intron 35.0%
! ACTTTCCAAAATTGGTTCAG+AGG - chr7_3:40582871-40582890 None:intergenic 35.0%
!! ATGTTATCAAGAGTGGATTG+CGG + chr7_3:40582897-40582916 Msa1104020:intron 35.0%
ATTGCCATAATAGCGAAACT+AGG + chr7_3:40583211-40583230 Msa1104020:intron 35.0%
CTATCCTAGTTTCGCTATTA+TGG - chr7_3:40583218-40583237 None:intergenic 35.0%
!!! AGCATCACTGTTTTTTGTAG+TGG + chr7_3:40583236-40583255 Msa1104020:intron 35.0%
GATATTTGACAACACTGCAT+CGG + chr7_3:40583298-40583317 Msa1104020:intron 35.0%
ATAAATACTTTGTCACAGGC+AGG + chr7_3:40583430-40583449 Msa1104020:intron 35.0%
AGGACAATTTCATTATGCAC+CGG + chr7_3:40583467-40583486 Msa1104020:CDS 35.0%
! CCAAAAATTGAGTTGCAAGA+AGG - chr7_3:40583517-40583536 None:intergenic 35.0%
! CCTTCTTGCAACTCAATTTT+TGG + chr7_3:40583514-40583533 Msa1104020:CDS 35.0%
! TCTTATTTGTTGGCATTCGT+TGG + chr7_3:40583698-40583717 Msa1104020:three_prime_UTR 35.0%
AGTGGTACTAATATCAGAGA+TGG + chr7_3:40583737-40583756 Msa1104020:three_prime_UTR 35.0%
TACTAATATCAGAGATGGCT+AGG + chr7_3:40583742-40583761 Msa1104020:three_prime_UTR 35.0%
TAGTAGCAAGTCTATGTACA+AGG - chr7_3:40583927-40583946 None:intergenic 35.0%
GTGATGATAGACACATGGTT+GGG - chr7_3:40579947-40579966 None:intergenic 40.0%
AGTGATGATAGACACATGGT+TGG - chr7_3:40579948-40579967 None:intergenic 40.0%
GATGAGTGATGATAGACACA+TGG - chr7_3:40579952-40579971 None:intergenic 40.0%
AGCCATTGAAAAAGGAGAGA+GGG - chr7_3:40580096-40580115 None:intergenic 40.0%
AAGCCATTGAAAAAGGAGAG+AGG - chr7_3:40580097-40580116 None:intergenic 40.0%
GGAATGGAAGCCATTGAAAA+AGG - chr7_3:40580104-40580123 None:intergenic 40.0%
AAGAGAGGTTGGAAAGATAG+AGG - chr7_3:40580167-40580186 None:intergenic 40.0%
! CTCTTCCTTTTCCCTTCAAA+GGG + chr7_3:40580196-40580215 Msa1104020:five_prime_UTR 40.0%
! AAGTTTCATGGTGGAAGAGT+TGG + chr7_3:40580263-40580282 Msa1104020:five_prime_UTR 40.0%
! AGTTTCATGGTGGAAGAGTT+GGG + chr7_3:40580264-40580283 Msa1104020:five_prime_UTR 40.0%
GTTGGGTTTAACCATAGAGA+AGG + chr7_3:40580281-40580300 Msa1104020:five_prime_UTR 40.0%
ACGAAGATTTCCCTTCTCTA+TGG - chr7_3:40580295-40580314 None:intergenic 40.0%
! GAAAGTGTAAGTGTTGTTGG+TGG + chr7_3:40580335-40580354 Msa1104020:five_prime_UTR 40.0%
GCAGTAACAGCAACAACAAA+AGG - chr7_3:40580413-40580432 None:intergenic 40.0%
!! CTCAACCTTCCACTTTTACT+TGG + chr7_3:40580447-40580466 Msa1104020:five_prime_UTR 40.0%
!! AACCTTCCACTTTTACTTGG+TGG + chr7_3:40580450-40580469 Msa1104020:five_prime_UTR 40.0%
!! ACCTTCCACTTTTACTTGGT+GGG + chr7_3:40580451-40580470 Msa1104020:five_prime_UTR 40.0%
GCTTCATAGTTAGGTGTTCA+AGG - chr7_3:40580709-40580728 None:intergenic 40.0%
!! TCAGAAGTGTTGGTGATAGA+GGG + chr7_3:40580791-40580810 Msa1104020:five_prime_UTR 40.0%
TGCTTATAATTGAGAGGGGA+TGG + chr7_3:40580960-40580979 Msa1104020:five_prime_UTR 40.0%
TATATTAGGCCCATCTGCTA+TGG + chr7_3:40580988-40581007 Msa1104020:five_prime_UTR 40.0%
ATACTCTGCATTTGCATGGT+TGG + chr7_3:40581017-40581036 Msa1104020:five_prime_UTR 40.0%
GATAGTCAGCACATTGATCA+AGG - chr7_3:40581113-40581132 None:intergenic 40.0%
TGCAAGAGCAAAATCTTCCA+TGG - chr7_3:40581447-40581466 None:intergenic 40.0%
!! ACTTGGTGTGTTGATTGCAA+AGG + chr7_3:40581624-40581643 Msa1104020:CDS 40.0%
!!! GTGTTGATTGCAAAGGCTTT+TGG + chr7_3:40581631-40581650 Msa1104020:CDS 40.0%
AAGCTATACCACTATTGCGT+CGG + chr7_3:40581771-40581790 Msa1104020:CDS 40.0%
AACAATAACCGACGCAATAG+TGG - chr7_3:40581782-40581801 None:intergenic 40.0%
TCTAATTGGATCTGTTGTGC+CGG + chr7_3:40581822-40581841 Msa1104020:intron 40.0%
TGACAACACTGACCTGAATT+TGG + chr7_3:40582082-40582101 Msa1104020:intron 40.0%
TTTACAGGTTGTTCTTGCTC+CGG + chr7_3:40582132-40582151 Msa1104020:intron 40.0%
AGAAGAAGACCAAGTGTTAC+CGG - chr7_3:40582154-40582173 None:intergenic 40.0%
GGTCGAAGAATAGATACAAC+TGG - chr7_3:40582193-40582212 None:intergenic 40.0%
GACTTCGGTTTATAGCAAGA+GGG - chr7_3:40582264-40582283 None:intergenic 40.0%
TGACTTCGGTTTATAGCAAG+AGG - chr7_3:40582265-40582284 None:intergenic 40.0%
! CGCCTGACAAAATTTGACTT+CGG - chr7_3:40582279-40582298 None:intergenic 40.0%
! AGTCAAATTTTGTCAGGCGA+AGG + chr7_3:40582280-40582299 Msa1104020:CDS 40.0%
GAACCAATATCCTAAGGTGA+AGG - chr7_3:40582347-40582366 None:intergenic 40.0%
TCTCAAACCTTCCATCCTTA+AGG + chr7_3:40582365-40582384 Msa1104020:CDS 40.0%
AAGACAGCATACCTTAAGGA+TGG - chr7_3:40582379-40582398 None:intergenic 40.0%
! TTGTGTCATTGCCTTGAGTT+AGG + chr7_3:40582520-40582539 Msa1104020:intron 40.0%
CCAACTTCAATCCTAACTCA+AGG - chr7_3:40582534-40582553 None:intergenic 40.0%
CCTTGAGTTAGGATTGAAGT+TGG + chr7_3:40582531-40582550 Msa1104020:intron 40.0%
GTCCAACGACTTATTCTACT+CGG + chr7_3:40582596-40582615 Msa1104020:intron 40.0%
AACCGAGTAGAATAAGTCGT+TGG - chr7_3:40582601-40582620 None:intergenic 40.0%
! TGGTACCTCTGAACCAATTT+TGG + chr7_3:40582863-40582882 Msa1104020:intron 40.0%
CAAATAGCAGATAGTGATGC+TGG + chr7_3:40582951-40582970 Msa1104020:intron 40.0%
TGTTGTAGCCATGGCTATAA+TGG + chr7_3:40583568-40583587 Msa1104020:CDS 40.0%
GTTGTAGCCATGGCTATAAT+GGG + chr7_3:40583569-40583588 Msa1104020:CDS 40.0%
! TCTCTGTCTTGCCTCTTTTT+GGG + chr7_3:40583592-40583611 Msa1104020:CDS 40.0%
AAAACCCTTTCCCCAAAAAG+AGG - chr7_3:40583606-40583625 None:intergenic 40.0%
GTGAAGGTAATGATGACAAC+AGG - chr7_3:40583640-40583659 None:intergenic 40.0%
TTAGGCCTCAAAAGCAGAAT+CGG - chr7_3:40583669-40583688 None:intergenic 40.0%
TAACACTGTATACACGACCA+AGG + chr7_3:40583823-40583842 Msa1104020:three_prime_UTR 40.0%
CCATTGAAAAAGGAGAGAGG+GGG - chr7_3:40580094-40580113 None:intergenic 45.0%
GCCATTGAAAAAGGAGAGAG+GGG - chr7_3:40580095-40580114 None:intergenic 45.0%
GAATGGAGAGAAAACGGGAA+TGG - chr7_3:40580120-40580139 None:intergenic 45.0%
GGAGTGAATGGAGAGAAAAC+GGG - chr7_3:40580125-40580144 None:intergenic 45.0%
GGGAGTGAATGGAGAGAAAA+CGG - chr7_3:40580126-40580145 None:intergenic 45.0%
! GCTCTTCCTTTTCCCTTCAA+AGG + chr7_3:40580195-40580214 Msa1104020:five_prime_UTR 45.0%
! TGAGACCCTTTGAAGGGAAA+AGG - chr7_3:40580204-40580223 None:intergenic 45.0%
TTCCCTTCAAAGGGTCTCAA+AGG + chr7_3:40580205-40580224 Msa1104020:five_prime_UTR 45.0%
TCCCTTCAAAGGGTCTCAAA+GGG + chr7_3:40580206-40580225 Msa1104020:five_prime_UTR 45.0%
!! ACCCTTTGAGACCCTTTGAA+GGG - chr7_3:40580210-40580229 None:intergenic 45.0%
!! GTAAGTGTTGTTGGTGGTGA+TGG + chr7_3:40580341-40580360 Msa1104020:five_prime_UTR 45.0%
!! CCTTCCACTTTTACTTGGTG+GGG + chr7_3:40580452-40580471 Msa1104020:five_prime_UTR 45.0%
! GGTGTCAATGTCAGAAGTGT+TGG + chr7_3:40580781-40580800 Msa1104020:five_prime_UTR 45.0%
!! GTCAGAAGTGTTGGTGATAG+AGG + chr7_3:40580790-40580809 Msa1104020:five_prime_UTR 45.0%
! TTGGTGATAGAGGGATACCT+AGG + chr7_3:40580800-40580819 Msa1104020:five_prime_UTR 45.0%
TTGGTACATCTCTGTAGCTG+TGG + chr7_3:40581036-40581055 Msa1104020:five_prime_UTR 45.0%
TGGTACATCTCTGTAGCTGT+GGG + chr7_3:40581037-40581056 Msa1104020:five_prime_UTR 45.0%
GAGTTATATGCTCCAGCACT+TGG + chr7_3:40581389-40581408 Msa1104020:CDS 45.0%
TTATATGCTCCAGCACTTGG+CGG + chr7_3:40581392-40581411 Msa1104020:CDS 45.0%
GCGGGATTATGTTGTCCATT+GGG + chr7_3:40581411-40581430 Msa1104020:CDS 45.0%
CATGGATAGTCCTATCCCAA+TGG - chr7_3:40581429-40581448 None:intergenic 45.0%
CATTGGGATAGGACTATCCA+TGG + chr7_3:40581427-40581446 Msa1104020:CDS 45.0%
AGGCCTTTACCACTTTCCAT+TGG + chr7_3:40581571-40581590 Msa1104020:intron 45.0%
GCAATCAACACACCAAGTAC+AGG - chr7_3:40581622-40581641 None:intergenic 45.0%
GTCCTTACAGCTTGTGTTTC+AGG + chr7_3:40581682-40581701 Msa1104020:CDS 45.0%
CTCCTGAAACACAAGCTGTA+AGG - chr7_3:40581687-40581706 None:intergenic 45.0%
CAGGTCAGTGTTGTCAATCA+CGG - chr7_3:40582078-40582097 None:intergenic 45.0%
!! ATAGCAACAAAGGGCATCAC+AGG - chr7_3:40582214-40582233 None:intergenic 45.0%
ATATCCTAAGGTGAAGGCAG+CGG - chr7_3:40582341-40582360 None:intergenic 45.0%
CTGCCTTCACCTTAGGATAT+TGG + chr7_3:40582341-40582360 Msa1104020:CDS 45.0%
CAGCATACCTTAAGGATGGA+AGG - chr7_3:40582375-40582394 None:intergenic 45.0%
!! GAGTGGATTGCGGAAAATAG+CGG + chr7_3:40582907-40582926 Msa1104020:intron 45.0%
AAACCGCTTGTGTGCCAAAT+TGG - chr7_3:40583153-40583172 None:intergenic 45.0%
ATGGCTACAACAGAACATGC+AGG - chr7_3:40583560-40583579 None:intergenic 45.0%
TGCATGTTCTGTTGTAGCCA+TGG + chr7_3:40583559-40583578 Msa1104020:CDS 45.0%
ACAGAGACCCATTATAGCCA+TGG - chr7_3:40583579-40583598 None:intergenic 45.0%
! GTCTCTGTCTTGCCTCTTTT+TGG + chr7_3:40583591-40583610 Msa1104020:CDS 45.0%
! CTCTGTCTTGCCTCTTTTTG+GGG + chr7_3:40583593-40583612 Msa1104020:CDS 45.0%
!! TCTTGCCTCTTTTTGGGGAA+AGG + chr7_3:40583598-40583617 Msa1104020:CDS 45.0%
!! CTTGCCTCTTTTTGGGGAAA+GGG + chr7_3:40583599-40583618 Msa1104020:CDS 45.0%
!! CAGAACCGATTCTGCTTTTG+AGG + chr7_3:40583661-40583680 Msa1104020:CDS 45.0%
CAGAGATGGCTAGGAAATGT+AGG + chr7_3:40583751-40583770 Msa1104020:three_prime_UTR 45.0%
GTGTGAAGAGGAATGAAGGG+GGG - chr7_3:40580072-40580091 None:intergenic 50.0%
GGTGTGAAGAGGAATGAAGG+GGG - chr7_3:40580073-40580092 None:intergenic 50.0%
GGGTGTGAAGAGGAATGAAG+GGG - chr7_3:40580074-40580093 None:intergenic 50.0%
GGGGTGTGAAGAGGAATGAA+GGG - chr7_3:40580075-40580094 None:intergenic 50.0%
!!! CCCCCTCTCTCCTTTTTCAA+TGG + chr7_3:40580091-40580110 Msa1104020:five_prime_UTR 50.0%
!! CACCCTTTGAGACCCTTTGA+AGG - chr7_3:40580211-40580230 None:intergenic 50.0%
CTTCAAAGGGTCTCAAAGGG+TGG + chr7_3:40580209-40580228 Msa1104020:five_prime_UTR 50.0%
CCCCACCAAGTAAAAGTGGA+AGG - chr7_3:40580455-40580474 None:intergenic 50.0%
GGAACCCCACCAAGTAAAAG+TGG - chr7_3:40580459-40580478 None:intergenic 50.0%
CGCGTCAGTGCTTCATAGTT+AGG - chr7_3:40580718-40580737 None:intergenic 50.0%
!! TGTGCTGACTATCTGAACGC+AGG + chr7_3:40581120-40581139 Msa1104020:five_prime_UTR 50.0%
TGACTATCTGAACGCAGGCA+GGG + chr7_3:40581125-40581144 Msa1104020:five_prime_UTR 50.0%
!! AGGCAGGGTATTTTGTCTGC+AGG + chr7_3:40581140-40581159 Msa1104020:five_prime_UTR 50.0%
TATATGCTCCAGCACTTGGC+GGG + chr7_3:40581393-40581412 Msa1104020:CDS 50.0%
AACATAATCCCGCCAAGTGC+TGG - chr7_3:40581404-40581423 None:intergenic 50.0%
GGCGGGATTATGTTGTCCAT+TGG + chr7_3:40581410-40581429 Msa1104020:CDS 50.0%
GACATGGCAACTGCATCAAC+CGG - chr7_3:40581844-40581863 None:intergenic 50.0%
! GCGCTATAGCATAGCGGAAT+TGG + chr7_3:40582029-40582048 Msa1104020:intron 50.0%
GTTCTTGCTCCGGTAACACT+TGG + chr7_3:40582142-40582161 Msa1104020:intron 50.0%
! AGGTCTTCGATTGGTTGCTC+CGG + chr7_3:40582300-40582319 Msa1104020:CDS 50.0%
ACAGCCCAGCAAGAATGAGA+AGG - chr7_3:40582661-40582680 None:intergenic 50.0%
GGTCCAATTTGGCACACAAG+CGG + chr7_3:40583147-40583166 Msa1104020:intron 50.0%
TTGTCACAGGCAGGAAGAAC+AGG + chr7_3:40583439-40583458 Msa1104020:intron 50.0%
AAGTGTGGAGCTCTGCATTC+CGG - chr7_3:40583489-40583508 None:intergenic 50.0%
GCTACAACAGAACATGCAGG+AGG - chr7_3:40583557-40583576 None:intergenic 50.0%
!! GCAGAATCGGTTCTGAGTGA+AGG - chr7_3:40583656-40583675 None:intergenic 50.0%
! GGGGGTGTGAAGAGGAATGA+AGG - chr7_3:40580076-40580095 None:intergenic 55.0%
AGCGAGTGCGTAAGAGAGGT+TGG - chr7_3:40580178-40580197 None:intergenic 55.0%
GAAGAGCGAGTGCGTAAGAG+AGG - chr7_3:40580182-40580201 None:intergenic 55.0%
CTGACTATCTGAACGCAGGC+AGG + chr7_3:40581124-40581143 Msa1104020:five_prime_UTR 55.0%
!! AGAGGCGCTATAGCGCTACA+AGG + chr7_3:40581934-40581953 Msa1104020:intron 55.0%
GCGGATGCGCTATAGCATAG+CGG + chr7_3:40582023-40582042 Msa1104020:intron 55.0%
GTCAGGCGAAGGTCTTCGAT+TGG + chr7_3:40582291-40582310 Msa1104020:CDS 55.0%
ATGCAGAGCTCCACACTTGC+AGG + chr7_3:40583491-40583510 Msa1104020:CDS 55.0%
TGCAAGAAGGCCTGCAAGTG+TGG - chr7_3:40583504-40583523 None:intergenic 55.0%
! AGGAGAGAGGGGGTGTGAAG+AGG - chr7_3:40580084-40580103 None:intergenic 60.0%
CATGCCGCTGCCTTCACCTT+AGG + chr7_3:40582334-40582353 Msa1104020:CDS 60.0%
GGCAGGAAGAACAGGTGAGC+AGG + chr7_3:40583447-40583466 Msa1104020:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 40579944 40583965 40579944 ID=Msa1104020;Name=Msa1104020
chr7_3 mRNA 40579944 40583965 40579944 ID=Msa1104020-mRNA-1;Parent=Msa1104020;Name=Msa1104020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1397|0.25|0.4|0.8|1|1|5|277|265
chr7_3 exon 40579944 40581474 40579944 ID=Msa1104020-mRNA-1:exon:8246;Parent=Msa1104020-mRNA-1
chr7_3 exon 40581573 40581792 40581573 ID=Msa1104020-mRNA-1:exon:8247;Parent=Msa1104020-mRNA-1
chr7_3 exon 40582190 40582386 40582190 ID=Msa1104020-mRNA-1:exon:8248;Parent=Msa1104020-mRNA-1
chr7_3 exon 40582449 40582454 40582449 ID=Msa1104020-mRNA-1:exon:8249;Parent=Msa1104020-mRNA-1
chr7_3 exon 40583448 40583965 40583448 ID=Msa1104020-mRNA-1:exon:8250;Parent=Msa1104020-mRNA-1
chr7_3 five_prime_UTR 40579944 40581340 40579944 ID=Msa1104020-mRNA-1:five_prime_utr;Parent=Msa1104020-mRNA-1
chr7_3 CDS 40581341 40581474 40581341 ID=Msa1104020-mRNA-1:cds;Parent=Msa1104020-mRNA-1
chr7_3 CDS 40581573 40581792 40581573 ID=Msa1104020-mRNA-1:cds;Parent=Msa1104020-mRNA-1
chr7_3 CDS 40582190 40582386 40582190 ID=Msa1104020-mRNA-1:cds;Parent=Msa1104020-mRNA-1
chr7_3 CDS 40582449 40582454 40582449 ID=Msa1104020-mRNA-1:cds;Parent=Msa1104020-mRNA-1
chr7_3 CDS 40583448 40583688 40583448 ID=Msa1104020-mRNA-1:cds;Parent=Msa1104020-mRNA-1
chr7_3 three_prime_UTR 40583689 40583965 40583689 ID=Msa1104020-mRNA-1:three_prime_utr;Parent=Msa1104020-mRNA-1
Gene Sequence

>Msa1104020

ATGAAAGAACTGAAATTTCAACTTGTTTTACTGATCAGGGTATCTAAAGAGTTATATGCTCCAGCACTTGGCGGGATTATGTTGTCCATTGGGATAGGACTATCCATGGAAGATTTTGCTCTTGCATTCAAAAGGCCTTTACCACTTTCCATTGGATTTATTGCGCAATATGTATTGAAACCTGTACTTGGTGTGTTGATTGCAAAGGCTTTTGGCTTGCCTAGAATGTTTTATGCAGGCTTTGTCCTTACAGCTTGTGTTTCAGGAGCTCAGTTATCTAGCTATGCAAGCTTTATAAGCAAAGGGGATGTAGCCCTATGCATTGTTCTTACAAGCTATACCACTATTGCGTCGCCAGTTGTATCTATTCTTCGACCTGTGATGCCCTTTGTTGCTATGATTTGTACTTCATTGTGCATTGGCAGCCCTCTTGCTATAAACCGAAGTCAAATTTTGTCAGGCGAAGGTCTTCGATTGGTTGCTCCGGTATTAATATTTCATGCCGCTGCCTTCACCTTAGGATATTGGTTCTCAAACCTTCCATCCTTAAGATTTCTGCAGGAAGAACAGGTGAGCAGGACAATTTCATTATGCACCGGAATGCAGAGCTCCACACTTGCAGGCCTTCTTGCAACTCAATTTTTGGGAAGTAGTCAAGCAGTTCCTCCTGCATGTTCTGTTGTAGCCATGGCTATAATGGGTCTCTGTCTTGCCTCTTTTTGGGGAAAGGGTTTTGAAATTAAAAACCTGTTGTCATCATTACCTTCACTCAGAACCGATTCTGCTTTTGAGGCCTAA

Protein sequence

>Msa1104020

MKELKFQLVLLIRVSKELYAPALGGIMLSIGIGLSMEDFALAFKRPLPLSIGFIAQYVLKPVLGVLIAKAFGLPRMFYAGFVLTACVSGAQLSSYASFISKGDVALCIVLTSYTTIASPVVSILRPVMPFVAMICTSLCIGSPLAINRSQILSGEGLRLVAPVLIFHAAAFTLGYWFSNLPSLRFLQEEQVSRTISLCTGMQSSTLAGLLATQFLGSSQAVPPACSVVAMAIMGLCLASFWGKGFEIKNLLSSLPSLRTDSAFEA*