Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1285800 | sp|Q8L4N1|PHO34_ARATH | 68.599 | 207 | 44 | 3 | 31 | 227 | 34 | 229 | 1.28e-80 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1285800 | A0A072TCT6 | 97.992 | 249 | 2 | 1 | 1 | 246 | 1 | 249 | 1.35e-177 | 497 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa1285800 | -0.816874 | 4.415951e-52 | -8.615850e-47 |
| Msa0606060 | Msa1285800 | -0.811711 | 6.107983e-51 | -8.615850e-47 |
| Msa0686610 | Msa1285800 | -0.810418 | 1.164100e-50 | -8.615850e-47 |
| Msa0719340 | Msa1285800 | -0.815636 | 8.351916e-52 | -8.615850e-47 |
| Msa0772210 | Msa1285800 | -0.803926 | 2.761000e-49 | -8.615850e-47 |
| Msa0804930 | Msa1285800 | -0.801185 | 1.014338e-48 | -8.615850e-47 |
| Msa0216560 | Msa1285800 | -0.800398 | 1.468247e-48 | -8.615850e-47 |
| Msa0223100 | Msa1285800 | -0.800966 | 1.124415e-48 | -8.615850e-47 |
| Msa1285800 | Msa1298740 | -0.816978 | 4.184855e-52 | -8.615850e-47 |
| Msa1285800 | Msa1387090 | -0.803040 | 4.213654e-49 | -8.615850e-47 |
| Msa1285800 | Msa1458920 | -0.822060 | 2.898721e-53 | -8.615850e-47 |
| Msa0427050 | Msa1285800 | -0.822685 | 2.075585e-53 | -8.615850e-47 |
| Msa0471620 | Msa1285800 | 0.817947 | 2.531841e-52 | -8.615850e-47 |
| Msa1033160 | Msa1285800 | -0.802487 | 5.480445e-49 | -8.615850e-47 |
| Msa1055360 | Msa1285800 | -0.801206 | 1.004646e-48 | -8.615850e-47 |
| Msa0288240 | Msa1285800 | -0.814039 | 1.887546e-51 | -8.615850e-47 |
| Msa0326670 | Msa1285800 | -0.805705 | 1.173427e-49 | -8.615850e-47 |
| Msa0336270 | Msa1285800 | -0.826303 | 2.920839e-54 | -8.615850e-47 |
| Msa1161160 | Msa1285800 | -0.800106 | 1.683838e-48 | -8.615850e-47 |
| Msa1214900 | Msa1285800 | -0.800517 | 1.388969e-48 | -8.615850e-47 |
| Msa0553520 | Msa1285800 | -0.804279 | 2.331757e-49 | -8.615850e-47 |
| Msa0595780 | Msa1285800 | -0.804336 | 2.268179e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1285800 | MtrunA17_Chr8g0361111 | 97.984 | 248 | 2 | 1 | 1 | 245 | 1 | 248 | 1.82e-180 | 495 |
| Msa1285800 | MtrunA17_Chr2g0323291 | 60.094 | 213 | 68 | 3 | 23 | 235 | 6 | 201 | 7.71e-87 | 257 |
| Msa1285800 | MtrunA17_Chr2g0318741 | 44.025 | 159 | 54 | 4 | 23 | 181 | 18 | 141 | 1.68e-34 | 121 |
| Msa1285800 | MtrunA17_Chr1g0194801 | 30.114 | 176 | 97 | 5 | 42 | 214 | 6 | 158 | 5.94e-19 | 80.9 |
| Msa1285800 | MtrunA17_Chr1g0176321 | 27.807 | 187 | 108 | 6 | 41 | 216 | 2 | 172 | 8.63e-19 | 80.9 |
| Msa1285800 | MtrunA17_Chr5g0427291 | 31.250 | 176 | 95 | 7 | 46 | 212 | 12 | 170 | 6.65e-15 | 70.5 |
| Msa1285800 | MtrunA17_Chr4g0032261 | 32.955 | 176 | 90 | 7 | 42 | 212 | 5 | 157 | 9.96e-15 | 69.7 |
| Msa1285800 | MtrunA17_Chr1g0195661 | 29.714 | 175 | 96 | 6 | 46 | 217 | 16 | 166 | 1.06e-14 | 69.7 |
| Msa1285800 | MtrunA17_Chr7g0240701 | 28.249 | 177 | 97 | 5 | 42 | 212 | 5 | 157 | 2.55e-14 | 68.9 |
| Msa1285800 | MtrunA17_Chr5g0433951 | 31.765 | 170 | 96 | 6 | 44 | 212 | 7 | 157 | 5.49e-14 | 67.8 |
| Msa1285800 | MtrunA17_Chr2g0294421 | 30.058 | 173 | 99 | 6 | 42 | 212 | 5 | 157 | 6.94e-14 | 67.4 |
| Msa1285800 | MtrunA17_Chr1g0176311 | 25.414 | 181 | 114 | 5 | 41 | 216 | 21 | 185 | 1.14e-12 | 64.7 |
| Msa1285800 | MtrunA17_Chr4g0001641 | 42.857 | 63 | 32 | 2 | 150 | 212 | 7 | 65 | 8.83e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1285800 | AT1G11360.2 | 61.207 | 232 | 67 | 4 | 1 | 232 | 1 | 209 | 2.19e-95 | 280 |
| Msa1285800 | AT1G11360.1 | 61.207 | 232 | 67 | 4 | 1 | 232 | 1 | 209 | 2.19e-95 | 280 |
| Msa1285800 | AT1G11360.4 | 61.207 | 232 | 67 | 4 | 1 | 232 | 1 | 209 | 2.19e-95 | 280 |
| Msa1285800 | AT1G11360.3 | 61.207 | 232 | 67 | 4 | 1 | 232 | 1 | 209 | 2.19e-95 | 280 |
| Msa1285800 | AT5G54430.2 | 67.290 | 214 | 47 | 5 | 39 | 246 | 45 | 241 | 8.50e-82 | 245 |
| Msa1285800 | AT5G54430.5 | 67.290 | 214 | 47 | 5 | 39 | 246 | 45 | 241 | 8.50e-82 | 245 |
| Msa1285800 | AT4G27320.1 | 68.599 | 207 | 44 | 3 | 31 | 227 | 34 | 229 | 1.30e-81 | 245 |
| Msa1285800 | AT4G27320.2 | 68.599 | 207 | 44 | 3 | 31 | 227 | 34 | 229 | 1.33e-81 | 245 |
| Msa1285800 | AT5G54430.3 | 67.136 | 213 | 47 | 5 | 39 | 245 | 45 | 240 | 1.06e-80 | 243 |
| Msa1285800 | AT5G54430.6 | 67.136 | 213 | 47 | 5 | 39 | 245 | 45 | 240 | 1.06e-80 | 243 |
| Msa1285800 | AT5G54430.1 | 67.136 | 213 | 47 | 5 | 39 | 245 | 45 | 240 | 1.32e-80 | 242 |
| Msa1285800 | AT5G54430.4 | 67.136 | 213 | 47 | 5 | 39 | 245 | 45 | 240 | 1.32e-80 | 242 |
| Msa1285800 | AT3G21210.1 | 44.538 | 238 | 67 | 7 | 22 | 246 | 8 | 193 | 2.62e-38 | 142 |
| Msa1285800 | AT3G17020.1 | 30.769 | 182 | 87 | 5 | 42 | 212 | 7 | 160 | 7.04e-16 | 73.2 |
| Msa1285800 | AT3G11930.2 | 28.261 | 184 | 115 | 6 | 36 | 216 | 28 | 197 | 7.21e-16 | 73.9 |
| Msa1285800 | AT3G11930.1 | 28.272 | 191 | 105 | 8 | 36 | 216 | 28 | 196 | 9.72e-16 | 73.6 |
| Msa1285800 | AT3G03270.2 | 31.667 | 180 | 93 | 5 | 39 | 212 | 2 | 157 | 1.93e-15 | 72.0 |
| Msa1285800 | AT3G11930.4 | 27.807 | 187 | 102 | 7 | 42 | 216 | 33 | 198 | 3.39e-15 | 72.4 |
| Msa1285800 | AT3G58450.1 | 26.738 | 187 | 105 | 4 | 44 | 220 | 32 | 196 | 7.85e-14 | 68.6 |
| Msa1285800 | AT3G53990.1 | 25.862 | 174 | 105 | 4 | 42 | 212 | 5 | 157 | 4.03e-13 | 65.9 |
| Msa1285800 | AT1G09740.2 | 28.723 | 188 | 110 | 6 | 37 | 219 | 3 | 171 | 4.71e-12 | 63.2 |
| Msa1285800 | AT1G09740.1 | 28.723 | 188 | 110 | 6 | 37 | 219 | 3 | 171 | 4.71e-12 | 63.2 |
| Msa1285800 | AT3G11930.3 | 25.121 | 207 | 118 | 6 | 36 | 216 | 28 | 223 | 6.23e-12 | 63.5 |
Find 84 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCGTATGCGGTGTTATT+GGG | 0.183511 | 8_3:-32055091 | None:intergenic |
| TGGTCTTAGTGCTGTGATTA+TGG | 0.187376 | 8_3:+32055591 | Msa1285800:CDS |
| GGATTCGTATGCGGTGTTAT+TGG | 0.193524 | 8_3:-32055092 | None:intergenic |
| AAGGGTGGTGGATTCGGATT+TGG | 0.212027 | 8_3:-32055129 | None:intergenic |
| AGGGTGGTGGATTCGGATTT+GGG | 0.271885 | 8_3:-32055128 | None:intergenic |
| ATGGCTTCTTCTTCTGAGTT+TGG | 0.280753 | 8_3:-32055376 | None:intergenic |
| ACGTCCTCTTCGGCGCTGAT+TGG | 0.283937 | 8_3:+32055323 | Msa1285800:CDS |
| GGTCTTAGTGCTGTGATTAT+GGG | 0.298458 | 8_3:+32055592 | Msa1285800:CDS |
| TATCATGATCCTTCACAATA+TGG | 0.299081 | 8_3:-32055534 | None:intergenic |
| CGTCCTCTTCGGCGCTGATT+GGG | 0.327604 | 8_3:+32055324 | Msa1285800:CDS |
| GTTATTGGTGGCGATGTTAA+TGG | 0.341994 | 8_3:-32055395 | None:intergenic |
| GGGAGGAAGGGTGGTGGATT+CGG | 0.347707 | 8_3:-32055135 | None:intergenic |
| TTTACGACGGGCGCCGGCGG+TGG | 0.353192 | 8_3:-32055188 | None:intergenic |
| GAGTTGGTGTTGCGGCGGAC+TGG | 0.353376 | 8_3:-32055165 | None:intergenic |
| GGCGAGGGGAGGAAGGGTGG+TGG | 0.353858 | 8_3:-32055141 | None:intergenic |
| TTCTTATGTTCATGCGCAAC+AGG | 0.354187 | 8_3:-32055793 | None:intergenic |
| TGAGGCTGTTGTTGCTGTTA+AGG | 0.360083 | 8_3:+32055741 | Msa1285800:CDS |
| GGAAGAGATCTCGGTGTTAT+TGG | 0.376841 | 8_3:-32055410 | None:intergenic |
| TTCACAATATGGATCTTATA+CGG | 0.381641 | 8_3:-32055523 | None:intergenic |
| GACTGGTGGCGAGGGGAGGA+AGG | 0.397572 | 8_3:-32055148 | None:intergenic |
| GGGTGGTGGATTCGGATTTG+GGG | 0.397867 | 8_3:-32055127 | None:intergenic |
| CGGGCGCCGGCGGTGGGAGT+TGG | 0.422938 | 8_3:-32055181 | None:intergenic |
| GCATGAACATAAGAAAGGTT+AGG | 0.425323 | 8_3:+32055801 | Msa1285800:CDS |
| TGAGTTTGGATCGGTGTTGA+TGG | 0.428135 | 8_3:-32055362 | None:intergenic |
| GGTGGCGAGGGGAGGAAGGG+TGG | 0.432256 | 8_3:-32055144 | None:intergenic |
| GCCGGCGCCCGTCGTAAAAT+CGG | 0.442139 | 8_3:+32055193 | Msa1285800:CDS |
| TTCTTCTTCTGAGTTTGGAT+CGG | 0.445240 | 8_3:-32055371 | None:intergenic |
| GGTGGTGGATTCGGATTTGG+GGG | 0.450244 | 8_3:-32055126 | None:intergenic |
| TTGCGGCGGACTGGTGGCGA+GGG | 0.451016 | 8_3:-32055156 | None:intergenic |
| CGAGGGAGTGATGGGAAGCT+TGG | 0.451227 | 8_3:+32055640 | Msa1285800:CDS |
| CATGAACATAAGAAAGGTTA+GGG | 0.460852 | 8_3:+32055802 | Msa1285800:CDS |
| TCTTCTTCTAGCTTCCGTTT+CGG | 0.464225 | 8_3:-32055436 | None:intergenic |
| GGATAACGAACAACAACAAC+AGG | 0.467960 | 8_3:-32055700 | None:intergenic |
| GCGGTGCGTCGAGGGAGTGA+TGG | 0.483321 | 8_3:+32055631 | Msa1285800:CDS |
| CGGTGCGTCGAGGGAGTGAT+GGG | 0.485521 | 8_3:+32055632 | Msa1285800:CDS |
| TCAGCAGCATCTTTATCATC+AGG | 0.485969 | 8_3:-32055721 | None:intergenic |
| GAGGAGGATGACAGCATCAC+CGG | 0.487963 | 8_3:-32055284 | None:intergenic |
| TGTCTTGAAGTTGAGCGTCT+TGG | 0.488142 | 8_3:+32055571 | Msa1285800:CDS |
| GGCGGACTGGTGGCGAGGGG+AGG | 0.493374 | 8_3:-32055152 | None:intergenic |
| ATTATGGGGAGCCGTGGATT+CGG | 0.500100 | 8_3:+32055607 | Msa1285800:CDS |
| GAGGGAGTGATGGGAAGCTT+GGG | 0.500539 | 8_3:+32055641 | Msa1285800:CDS |
| ATTCGTATGCGGTGTTATTG+GGG | 0.516187 | 8_3:-32055090 | None:intergenic |
| GTCCTCTTCGGCGCTGATTG+GGG | 0.529444 | 8_3:+32055325 | Msa1285800:CDS |
| GTTGCGGCGGACTGGTGGCG+AGG | 0.531453 | 8_3:-32055157 | None:intergenic |
| GGATTCGGTGCGGTGCGTCG+AGG | 0.534923 | 8_3:+32055622 | Msa1285800:CDS |
| ACTGGTGGCGAGGGGAGGAA+GGG | 0.536304 | 8_3:-32055147 | None:intergenic |
| GCAACACCAACTCCCACCGC+CGG | 0.537020 | 8_3:+32055175 | Msa1285800:CDS |
| GACGCACCGCACCGAATCCA+CGG | 0.538000 | 8_3:-32055618 | None:intergenic |
| GTCTTAGTGCTGTGATTATG+GGG | 0.538121 | 8_3:+32055593 | Msa1285800:CDS |
| CGCCGAAGAGGACGTCGGTA+GGG | 0.540325 | 8_3:-32055315 | None:intergenic |
| TGTGAAGGATCATGATATGA+AGG | 0.542050 | 8_3:+32055540 | Msa1285800:CDS |
| TTCTAGCTTCCGTTTCGGCG+TGG | 0.549588 | 8_3:-32055431 | None:intergenic |
| TTGGTGTTGCGGCGGACTGG+TGG | 0.551212 | 8_3:-32055162 | None:intergenic |
| CGGTAGGGCTGACGTGGAGG+AGG | 0.552310 | 8_3:-32055300 | None:intergenic |
| AGAGATCTCGGTGTTATTGG+TGG | 0.561192 | 8_3:-32055407 | None:intergenic |
| TGCTGTTAAGGAAGGTGATG+AGG | 0.561629 | 8_3:+32055753 | Msa1285800:CDS |
| GGACGTCGGTAGGGCTGACG+TGG | 0.563280 | 8_3:-32055306 | None:intergenic |
| TTTCGGCGTGGAAGAGATCT+CGG | 0.567577 | 8_3:-32055419 | None:intergenic |
| GGCGGTGGGAGTTGGTGTTG+CGG | 0.569635 | 8_3:-32055173 | None:intergenic |
| AGATCTCTTCCACGCCGAAA+CGG | 0.575017 | 8_3:+32055422 | Msa1285800:CDS |
| GGGTCGGATGTAGTGTTGTA+CGG | 0.581567 | 8_3:-32055263 | None:intergenic |
| GCGCCGAAGAGGACGTCGGT+AGG | 0.584829 | 8_3:-32055316 | None:intergenic |
| GCTGTTAAGGAAGGTGATGA+GGG | 0.586963 | 8_3:+32055754 | Msa1285800:CDS |
| GTTGCGCATGAACATAAGAA+AGG | 0.592839 | 8_3:+32055796 | Msa1285800:CDS |
| AGGAGGATGACAGCATCACC+GGG | 0.600265 | 8_3:-32055283 | None:intergenic |
| GCTCTCGTCGGAGAGGTCAA+CGG | 0.611136 | 8_3:-32055221 | None:intergenic |
| AACCCCAATCAGCGCCGAAG+AGG | 0.613753 | 8_3:-32055327 | None:intergenic |
| GGAATCTGAGCTTCTTTGAG+CGG | 0.614313 | 8_3:-32055502 | None:intergenic |
| GGTGTTGATGGAGAGATCGA+TGG | 0.618449 | 8_3:-32055350 | None:intergenic |
| CGTCGGTAGGGCTGACGTGG+AGG | 0.619707 | 8_3:-32055303 | None:intergenic |
| TGCGGCGGACTGGTGGCGAG+GGG | 0.622611 | 8_3:-32055155 | None:intergenic |
| GCTGTTGTTGCTGTTAAGGA+AGG | 0.624018 | 8_3:+32055745 | Msa1285800:CDS |
| GGTGGGAGTTGGTGTTGCGG+CGG | 0.628633 | 8_3:-32055170 | None:intergenic |
| TGATGATAAAGATGCTGCTG+AGG | 0.632652 | 8_3:+32055723 | Msa1285800:CDS |
| GGATGACAGCATCACCGGGT+CGG | 0.651732 | 8_3:-32055279 | None:intergenic |
| GTATAAGATCCATATTGTGA+AGG | 0.654145 | 8_3:+32055525 | Msa1285800:CDS |
| AGGATCATGATATGAAGGAA+CGG | 0.667933 | 8_3:+32055545 | Msa1285800:CDS |
| GCTGTGATTATGGGGAGCCG+TGG | 0.674901 | 8_3:+32055601 | Msa1285800:CDS |
| TTGTGGGTCGGATTCGTATG+CGG | 0.682438 | 8_3:-32055101 | None:intergenic |
| CGTACGCGCTCTCGTCGGAG+AGG | 0.686951 | 8_3:-32055228 | None:intergenic |
| GTACAACACTACATCCGACC+CGG | 0.689396 | 8_3:+32055265 | Msa1285800:CDS |
| ATCAGCGCCGAAGAGGACGT+CGG | 0.716462 | 8_3:-32055320 | None:intergenic |
| GGGGAGCCGTGGATTCGGTG+CGG | 0.729331 | 8_3:+32055612 | Msa1285800:CDS |
| AAGATCAGCAGACTTCGTCG+CGG | 0.796336 | 8_3:-32055473 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTCACAATATGGATCTTATA+CGG | - | chr8_3:32055526-32055545 | None:intergenic | 25.0% |
| GTATAAGATCCATATTGTGA+AGG | + | chr8_3:32055525-32055544 | Msa1285800:CDS | 30.0% | |
| TATCATGATCCTTCACAATA+TGG | - | chr8_3:32055537-32055556 | None:intergenic | 30.0% | |
| TTCTTCTTCTGAGTTTGGAT+CGG | - | chr8_3:32055374-32055393 | None:intergenic | 35.0% | |
| TGTGAAGGATCATGATATGA+AGG | + | chr8_3:32055540-32055559 | Msa1285800:CDS | 35.0% | |
| AGGATCATGATATGAAGGAA+CGG | + | chr8_3:32055545-32055564 | Msa1285800:CDS | 35.0% | |
| !! | ATTCGTATGCGGTGTTATTG+GGG | - | chr8_3:32055093-32055112 | None:intergenic | 40.0% |
| !! | GATTCGTATGCGGTGTTATT+GGG | - | chr8_3:32055094-32055113 | None:intergenic | 40.0% |
| ATGGCTTCTTCTTCTGAGTT+TGG | - | chr8_3:32055379-32055398 | None:intergenic | 40.0% | |
| !! | GTTATTGGTGGCGATGTTAA+TGG | - | chr8_3:32055398-32055417 | None:intergenic | 40.0% |
| !! | TCTTCTTCTAGCTTCCGTTT+CGG | - | chr8_3:32055439-32055458 | None:intergenic | 40.0% |
| ! | TGGTCTTAGTGCTGTGATTA+TGG | + | chr8_3:32055591-32055610 | Msa1285800:CDS | 40.0% |
| GGTCTTAGTGCTGTGATTAT+GGG | + | chr8_3:32055592-32055611 | Msa1285800:CDS | 40.0% | |
| GTCTTAGTGCTGTGATTATG+GGG | + | chr8_3:32055593-32055612 | Msa1285800:CDS | 40.0% | |
| GGATAACGAACAACAACAAC+AGG | - | chr8_3:32055703-32055722 | None:intergenic | 40.0% | |
| TCAGCAGCATCTTTATCATC+AGG | - | chr8_3:32055724-32055743 | None:intergenic | 40.0% | |
| TGATGATAAAGATGCTGCTG+AGG | + | chr8_3:32055723-32055742 | Msa1285800:CDS | 40.0% | |
| TTCTTATGTTCATGCGCAAC+AGG | - | chr8_3:32055796-32055815 | None:intergenic | 40.0% | |
| GTTGCGCATGAACATAAGAA+AGG | + | chr8_3:32055796-32055815 | Msa1285800:CDS | 40.0% | |
| !! | GGATTCGTATGCGGTGTTAT+TGG | - | chr8_3:32055095-32055114 | None:intergenic | 45.0% |
| !! | TGAGTTTGGATCGGTGTTGA+TGG | - | chr8_3:32055365-32055384 | None:intergenic | 45.0% |
| !! | AGAGATCTCGGTGTTATTGG+TGG | - | chr8_3:32055410-32055429 | None:intergenic | 45.0% |
| !! | GGAAGAGATCTCGGTGTTAT+TGG | - | chr8_3:32055413-32055432 | None:intergenic | 45.0% |
| GGAATCTGAGCTTCTTTGAG+CGG | - | chr8_3:32055505-32055524 | None:intergenic | 45.0% | |
| TGTCTTGAAGTTGAGCGTCT+TGG | + | chr8_3:32055571-32055590 | Msa1285800:CDS | 45.0% | |
| ! | TGAGGCTGTTGTTGCTGTTA+AGG | + | chr8_3:32055741-32055760 | Msa1285800:CDS | 45.0% |
| ! | GCTGTTGTTGCTGTTAAGGA+AGG | + | chr8_3:32055745-32055764 | Msa1285800:CDS | 45.0% |
| TGCTGTTAAGGAAGGTGATG+AGG | + | chr8_3:32055753-32055772 | Msa1285800:CDS | 45.0% | |
| GCTGTTAAGGAAGGTGATGA+GGG | + | chr8_3:32055754-32055773 | Msa1285800:CDS | 45.0% | |
| TTGTGGGTCGGATTCGTATG+CGG | - | chr8_3:32055104-32055123 | None:intergenic | 50.0% | |
| TTCGGATTTGGGGGAGTTGT+GGG | - | chr8_3:32055120-32055139 | None:intergenic | 50.0% | |
| ATTCGGATTTGGGGGAGTTG+TGG | - | chr8_3:32055121-32055140 | None:intergenic | 50.0% | |
| !! | AGGGTGGTGGATTCGGATTT+GGG | - | chr8_3:32055131-32055150 | None:intergenic | 50.0% |
| !! | AAGGGTGGTGGATTCGGATT+TGG | - | chr8_3:32055132-32055151 | None:intergenic | 50.0% |
| GGGTCGGATGTAGTGTTGTA+CGG | - | chr8_3:32055266-32055285 | None:intergenic | 50.0% | |
| GTACAACACTACATCCGACC+CGG | + | chr8_3:32055265-32055284 | Msa1285800:CDS | 50.0% | |
| !! | GGTGTTGATGGAGAGATCGA+TGG | - | chr8_3:32055353-32055372 | None:intergenic | 50.0% |
| TTTCGGCGTGGAAGAGATCT+CGG | - | chr8_3:32055422-32055441 | None:intergenic | 50.0% | |
| AGATCTCTTCCACGCCGAAA+CGG | + | chr8_3:32055422-32055441 | Msa1285800:CDS | 50.0% | |
| AAGATCAGCAGACTTCGTCG+CGG | - | chr8_3:32055476-32055495 | None:intergenic | 50.0% | |
| ATTATGGGGAGCCGTGGATT+CGG | + | chr8_3:32055607-32055626 | Msa1285800:CDS | 50.0% | |
| GATTTGGGGGAGTTGTGGGT+CGG | - | chr8_3:32055116-32055135 | None:intergenic | 55.0% | |
| !! | GGTGGTGGATTCGGATTTGG+GGG | - | chr8_3:32055129-32055148 | None:intergenic | 55.0% |
| !! | GGGTGGTGGATTCGGATTTG+GGG | - | chr8_3:32055130-32055149 | None:intergenic | 55.0% |
| AGGAGGATGACAGCATCACC+GGG | - | chr8_3:32055286-32055305 | None:intergenic | 55.0% | |
| GAGGAGGATGACAGCATCAC+CGG | - | chr8_3:32055287-32055306 | None:intergenic | 55.0% | |
| !! | TTCTAGCTTCCGTTTCGGCG+TGG | - | chr8_3:32055434-32055453 | None:intergenic | 55.0% |
| ! | GAGGGAGTGATGGGAAGCTT+GGG | + | chr8_3:32055641-32055660 | Msa1285800:CDS | 55.0% |
| !! | GGGAGGAAGGGTGGTGGATT+CGG | - | chr8_3:32055138-32055157 | None:intergenic | 60.0% |
| !!! | GGCGACGCCGATTTTACGAC+GGG | - | chr8_3:32055203-32055222 | None:intergenic | 60.0% |
| !!! | CGGCGACGCCGATTTTACGA+CGG | - | chr8_3:32055204-32055223 | None:intergenic | 60.0% |
| GCTCTCGTCGGAGAGGTCAA+CGG | - | chr8_3:32055224-32055243 | None:intergenic | 60.0% | |
| TACAGCGTACGCGCTCTCGT+CGG | - | chr8_3:32055236-32055255 | None:intergenic | 60.0% | |
| GGATGACAGCATCACCGGGT+CGG | - | chr8_3:32055282-32055301 | None:intergenic | 60.0% | |
| AGCCCTACCGACGTCCTCTT+CGG | + | chr8_3:32055313-32055332 | Msa1285800:CDS | 60.0% | |
| ! | ATCAGCGCCGAAGAGGACGT+CGG | - | chr8_3:32055323-32055342 | None:intergenic | 60.0% |
| !! | ACGTCCTCTTCGGCGCTGAT+TGG | + | chr8_3:32055323-32055342 | Msa1285800:CDS | 60.0% |
| !! | CGTCCTCTTCGGCGCTGATT+GGG | + | chr8_3:32055324-32055343 | Msa1285800:CDS | 60.0% |
| !! | GTCCTCTTCGGCGCTGATTG+GGG | + | chr8_3:32055325-32055344 | Msa1285800:CDS | 60.0% |
| ! | AACCCCAATCAGCGCCGAAG+AGG | - | chr8_3:32055330-32055349 | None:intergenic | 60.0% |
| GCTGTGATTATGGGGAGCCG+TGG | + | chr8_3:32055601-32055620 | Msa1285800:CDS | 60.0% | |
| ! | CGAGGGAGTGATGGGAAGCT+TGG | + | chr8_3:32055640-32055659 | Msa1285800:CDS | 60.0% |
| ! | ACTGGTGGCGAGGGGAGGAA+GGG | - | chr8_3:32055150-32055169 | None:intergenic | 65.0% |
| !! | TTGGTGTTGCGGCGGACTGG+TGG | - | chr8_3:32055165-32055184 | None:intergenic | 65.0% |
| !! | GAGTTGGTGTTGCGGCGGAC+TGG | - | chr8_3:32055168-32055187 | None:intergenic | 65.0% |
| !! | GGTGGGAGTTGGTGTTGCGG+CGG | - | chr8_3:32055173-32055192 | None:intergenic | 65.0% |
| !! | GGCGGTGGGAGTTGGTGTTG+CGG | - | chr8_3:32055176-32055195 | None:intergenic | 65.0% |
| GCAACACCAACTCCCACCGC+CGG | + | chr8_3:32055175-32055194 | Msa1285800:CDS | 65.0% | |
| !!! | GATTTTACGACGGGCGCCGG+CGG | - | chr8_3:32055194-32055213 | None:intergenic | 65.0% |
| GCCGGCGCCCGTCGTAAAAT+CGG | + | chr8_3:32055193-32055212 | Msa1285800:CDS | 65.0% | |
| !! | GCCGATTTTACGACGGGCGC+CGG | - | chr8_3:32055197-32055216 | None:intergenic | 65.0% |
| AGAGCGCGTACGCTGTACGC+TGG | + | chr8_3:32055239-32055258 | Msa1285800:CDS | 65.0% | |
| GAGCGCGTACGCTGTACGCT+GGG | + | chr8_3:32055240-32055259 | Msa1285800:CDS | 65.0% | |
| CGCCGAAGAGGACGTCGGTA+GGG | - | chr8_3:32055318-32055337 | None:intergenic | 65.0% | |
| GACGCACCGCACCGAATCCA+CGG | - | chr8_3:32055621-32055640 | None:intergenic | 65.0% | |
| !! | GATTCGGTGCGGTGCGTCGA+GGG | + | chr8_3:32055623-32055642 | Msa1285800:CDS | 65.0% |
| CGGTGCGTCGAGGGAGTGAT+GGG | + | chr8_3:32055632-32055651 | Msa1285800:CDS | 65.0% | |
| ! | GACTGGTGGCGAGGGGAGGA+AGG | - | chr8_3:32055151-32055170 | None:intergenic | 70.0% |
| !! | TTGCGGCGGACTGGTGGCGA+GGG | - | chr8_3:32055159-32055178 | None:intergenic | 70.0% |
| CGTACGCGCTCTCGTCGGAG+AGG | - | chr8_3:32055231-32055250 | None:intergenic | 70.0% | |
| CGGTAGGGCTGACGTGGAGG+AGG | - | chr8_3:32055303-32055322 | None:intergenic | 70.0% | |
| CGTCGGTAGGGCTGACGTGG+AGG | - | chr8_3:32055306-32055325 | None:intergenic | 70.0% | |
| GGACGTCGGTAGGGCTGACG+TGG | - | chr8_3:32055309-32055328 | None:intergenic | 70.0% | |
| GCGCCGAAGAGGACGTCGGT+AGG | - | chr8_3:32055319-32055338 | None:intergenic | 70.0% | |
| !! | GGGGAGCCGTGGATTCGGTG+CGG | + | chr8_3:32055612-32055631 | Msa1285800:CDS | 70.0% |
| !! | GGATTCGGTGCGGTGCGTCG+AGG | + | chr8_3:32055622-32055641 | Msa1285800:CDS | 70.0% |
| GCGGTGCGTCGAGGGAGTGA+TGG | + | chr8_3:32055631-32055650 | Msa1285800:CDS | 70.0% | |
| GGCGAGGGGAGGAAGGGTGG+TGG | - | chr8_3:32055144-32055163 | None:intergenic | 75.0% | |
| GGTGGCGAGGGGAGGAAGGG+TGG | - | chr8_3:32055147-32055166 | None:intergenic | 75.0% | |
| !! | TGCGGCGGACTGGTGGCGAG+GGG | - | chr8_3:32055158-32055177 | None:intergenic | 75.0% |
| !! | GTTGCGGCGGACTGGTGGCG+AGG | - | chr8_3:32055160-32055179 | None:intergenic | 75.0% |
| !! | TTACGACGGGCGCCGGCGGT+GGG | - | chr8_3:32055190-32055209 | None:intergenic | 75.0% |
| !! | TTTACGACGGGCGCCGGCGG+TGG | - | chr8_3:32055191-32055210 | None:intergenic | 75.0% |
| !!! | GGCGGACTGGTGGCGAGGGG+AGG | - | chr8_3:32055155-32055174 | None:intergenic | 80.0% |
| !!! | CGGGCGCCGGCGGTGGGAGT+TGG | - | chr8_3:32055184-32055203 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 32055082 | 32055822 | 32055082 | ID=Msa1285800;Name=Msa1285800 |
| chr8_3 | mRNA | 32055082 | 32055822 | 32055082 | ID=Msa1285800-mRNA-1;Parent=Msa1285800;Name=Msa1285800-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|246 |
| chr8_3 | exon | 32055082 | 32055822 | 32055082 | ID=Msa1285800-mRNA-1:exon:9972;Parent=Msa1285800-mRNA-1 |
| chr8_3 | CDS | 32055082 | 32055822 | 32055082 | ID=Msa1285800-mRNA-1:cds;Parent=Msa1285800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
