AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336270 MtrunA17_Chr2g0322151 97.222 360 10 0 1 360 1 360 0.0 727
Msa0336270 MtrunA17_Chr1g0184291 57.778 360 151 1 1 359 1 360 6.37e-157 444
Msa0336270 MtrunA17_Chr2g0328911 38.750 320 187 2 39 355 431 744 2.16e-69 231
Msa0336270 MtrunA17_Chr4g0031981 28.063 253 142 7 110 344 558 788 3.21e-15 77.0
Msa0336270 MtrunA17_Chr2g0328601 31.613 155 91 3 200 344 626 775 1.33e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336270 AT3G44160.1 76.389 360 85 0 1 360 1 360 0.0 576
Msa0336270 AT3G48620.1 57.047 298 80 4 108 360 25 319 1.06e-102 306
Msa0336270 AT5G19620.1 40.312 320 182 2 39 355 415 728 2.05e-69 231
Msa0336270 AT3G46740.1 27.969 261 148 8 102 344 564 802 8.73e-15 76.3
Msa0336270 AT4G09080.3 26.347 334 186 15 44 343 1 308 9.76e-12 65.9
Msa0336270 AT4G09080.2 26.506 332 190 15 43 343 82 390 1.24e-11 65.9
Msa0336270 AT4G09080.1 26.269 335 187 16 43 343 71 379 1.43e-11 65.9

Find 107 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACCTTCTTCTGCGTTTA+AGG 0.114830 2_4:-55649208 None:intergenic
TCACTTCCACCAAATAAATT+TGG 0.134229 2_4:-55645004 None:intergenic
AATCCTCTTTCACTAGTAAT+TGG 0.162368 2_4:+55644732 Msa0336270:CDS
ATCAAACATCCAAATTTATT+TGG 0.180369 2_4:+55644995 Msa0336270:CDS
AAGCAAAGGACTCTCTATTT+TGG 0.205975 2_4:+55649160 Msa0336270:CDS
ATTCAGGTAATCCAGCTTTA+AGG 0.210991 2_4:+55649041 Msa0336270:intron
CTTAGATTTAAATCACAATT+TGG 0.235806 2_4:+55649103 Msa0336270:CDS
GGTGAAGGAGCAGTTGGTTC+TGG 0.281377 2_4:+55646451 Msa0336270:CDS
GAGCGGGAGAAATTGTTTAT+AGG 0.292776 2_4:-55645401 None:intergenic
ACGGGTTTGCTTTGACTTGC+AGG 0.300006 2_4:+55645707 Msa0336270:CDS
TAGCATAATCAACTTGAAAA+TGG 0.303047 2_4:-55649126 None:intergenic
AAACAATTTCGTAAGAGGTT+TGG 0.342314 2_4:-55644402 None:intergenic
TCTGGTGTTGGATTGGGATA+TGG 0.346612 2_4:+55649079 Msa0336270:CDS
AGCGGGAGAAATTGTTTATA+GGG 0.372125 2_4:-55645400 None:intergenic
GTGAGAAGCTTGATGTTTCA+TGG 0.384645 2_4:+55645023 Msa0336270:CDS
TTACAGGTGGTTCAATCGTT+GGG 0.396160 2_4:+55646371 Msa0336270:CDS
CTCGGAAGTGTCCGAGGGTA+TGG 0.399077 2_4:+55646430 Msa0336270:CDS
TCGTAGCAACAAATTTAAAT+CGG 0.401389 2_4:-55646066 None:intergenic
ATTTGATGCTCAATACCTTC+AGG 0.409105 2_4:+55644618 Msa0336270:CDS
CCAGGATCTGGTGTTGGATT+GGG 0.413040 2_4:+55649073 Msa0336270:CDS
TCATCAGTCTTTCGTGGTGC+AGG 0.423045 2_4:+55645111 Msa0336270:CDS
ACCAGGATCTGGTGTTGGAT+TGG 0.424729 2_4:+55649072 Msa0336270:CDS
TGTGTTTGTTTCGTAACGTT+AGG 0.427695 2_4:-55644352 None:intergenic
ATCCTCTTTCACTAGTAATT+GGG 0.431742 2_4:+55644733 Msa0336270:CDS
CTCCCAATTACTAGTGAAAG+AGG 0.434708 2_4:-55644735 None:intergenic
CACAACCAGCATAAAATTTG+AGG 0.435411 2_4:+55645502 Msa0336270:CDS
TGGCAGTCCACATGACAGTA+TGG 0.439822 2_4:+55645809 Msa0336270:CDS
CGGACTGGTTATCTTGTACC+TGG 0.449059 2_4:+55646873 Msa0336270:CDS
TTTAAATTTGTTGCTACGAA+AGG 0.451134 2_4:+55646070 Msa0336270:CDS
ATTTATCTAGATTAACAGTT+GGG 0.453900 2_4:+55645441 Msa0336270:CDS
TCTTGCTCATCAGTCTTTCG+TGG 0.456421 2_4:+55645105 Msa0336270:CDS
GGTTTACCATGCCTTAAAGC+TGG 0.458468 2_4:-55649052 None:intergenic
ATTATCCACTTAGAAAGAAC+AGG 0.458623 2_4:-55646037 None:intergenic
AATTTCTCCCGCTCGGGAAG+TGG 0.463381 2_4:+55645410 Msa0336270:CDS
GTGAAGGAGCAGTTGGTTCT+GGG 0.468959 2_4:+55646452 Msa0336270:CDS
ATCTAGATTAACAGTTGGGA+TGG 0.469448 2_4:+55645445 Msa0336270:CDS
TAGCGAACTGACTCTCCCTT+TGG 0.469738 2_4:+55646495 Msa0336270:CDS
AAACATCCAAATTTATTTGG+TGG 0.471379 2_4:+55644998 Msa0336270:CDS
ATACCATGGATTCCGATCTC+TGG 0.476671 2_4:-55645377 None:intergenic
CGACAAAGATCTATAGAAGA+TGG 0.477798 2_4:+55649266 Msa0336270:three_prime_UTR
GTGTTTGTTTCGTAACGTTA+GGG 0.487000 2_4:-55644351 None:intergenic
TGGTTCAATCGTTGGGGACA+TGG 0.488806 2_4:+55646378 Msa0336270:CDS
GTATTCCTGTTCTTTCTAAG+TGG 0.494653 2_4:+55646032 Msa0336270:CDS
TACACCTCCACTTCCCGAGC+GGG 0.498840 2_4:-55645417 None:intergenic
CTTACAGGTGGTTCAATCGT+TGG 0.500285 2_4:+55646370 Msa0336270:CDS
TTCACTATAGACTAAGATGT+TGG 0.504803 2_4:+55646815 Msa0336270:intron
AGGCATGGTAAACCAGGATC+TGG 0.504989 2_4:+55649061 Msa0336270:CDS
TGGATTGCGGAACAGATTTG+CGG 0.507880 2_4:+55646853 Msa0336270:CDS
CCCAATCCAACACCAGATCC+TGG 0.509779 2_4:-55649073 None:intergenic
CTGCTCCACTTTGAACTCAC+AGG 0.511177 2_4:-55645479 None:intergenic
TGCGGAACAGATTTGCGGAC+TGG 0.512104 2_4:+55646858 Msa0336270:CDS
GACTAAGATGTTGGAAGGTG+CGG 0.512255 2_4:+55646824 Msa0336270:intron
ATATAAGCAGGGATCGTGAC+GGG 0.513332 2_4:+55645689 Msa0336270:CDS
TATAAACAATTTCTCCCGCT+CGG 0.515264 2_4:+55645403 Msa0336270:CDS
AATTTATCTAGATTAACAGT+TGG 0.516713 2_4:+55645440 Msa0336270:CDS
ATGATGGTCGCAATATAAGC+AGG 0.520497 2_4:+55645677 Msa0336270:CDS
ATAAACAATTTCTCCCGCTC+GGG 0.522046 2_4:+55645404 Msa0336270:CDS
CATTCTCTTTCACCAGAGAT+CGG 0.529149 2_4:+55645365 Msa0336270:CDS
GGTAATCCAGCTTTAAGGCA+TGG 0.530911 2_4:+55649046 Msa0336270:intron
TCTTCTATAGATCTTTGTCG+TGG 0.533917 2_4:-55649263 None:intergenic
TTCTCCCGCTCGGGAAGTGG+AGG 0.535594 2_4:+55645413 Msa0336270:CDS
TGAGAAGCTTGATGTTTCAT+GGG 0.536213 2_4:+55645024 Msa0336270:CDS
AATTGTAACCTTTGCCAGCA+TGG 0.537183 2_4:-55644475 None:intergenic
GCTACGAAAGGAATCAAACT+TGG 0.538847 2_4:+55646082 Msa0336270:CDS
AAAACAAAACAATCTTAAAG+TGG 0.541381 2_4:-55644323 None:intergenic
TGGTTCTGGGAGATCATGCC+TGG 0.541615 2_4:+55646465 Msa0336270:CDS
GCTTTAAGGCATGGTAAACC+AGG 0.541848 2_4:+55649055 Msa0336270:CDS
CTTCTATAGATCTTTGTCGT+GGG 0.543419 2_4:-55649262 None:intergenic
GCTTGATGTTTCATGGGACA+AGG 0.545752 2_4:+55645030 Msa0336270:CDS
AAATCCTTAAACGCAGAAGA+AGG 0.551240 2_4:+55649204 Msa0336270:exon
TTGCGACCATCATCGTTCAA+TGG 0.552385 2_4:-55645667 None:intergenic
GACCAACACTTCTCTTGACA+AGG 0.557891 2_4:+55646104 Msa0336270:CDS
AACCTTGTCAAGAGAAGTGT+TGG 0.558580 2_4:-55646106 None:intergenic
GTTCGTCCATTGAACGATGA+TGG 0.559073 2_4:+55645661 Msa0336270:CDS
AAGAGCATCCATGCTGGCAA+AGG 0.570469 2_4:+55644467 Msa0336270:CDS
CCAATGGAAAATGCTTGGTA+AGG 0.570469 2_4:-55646403 None:intergenic
CTATTAATGCATTTAAGCAA+AGG 0.572368 2_4:+55649146 Msa0336270:CDS
AACAGTTGGGATGGATCTGA+AGG 0.572536 2_4:+55645454 Msa0336270:CDS
GCAAGAGTCTCAACACTCAA+AGG 0.572688 2_4:+55645842 Msa0336270:CDS
AATTGTTTATAGGGATACCA+TGG 0.576485 2_4:-55645391 None:intergenic
GCTCAAAAGAGCATCCATGC+TGG 0.579159 2_4:+55644461 Msa0336270:CDS
TCACCAGAGATCGGAATCCA+TGG 0.580861 2_4:+55645374 Msa0336270:CDS
CTCTTTCACTAGTAATTGGG+AGG 0.582217 2_4:+55644736 Msa0336270:CDS
CTGCTCCTTCACCATACCCT+CGG 0.582460 2_4:-55646441 None:intergenic
CTTGATGTTTCATGGGACAA+GGG 0.592569 2_4:+55645031 Msa0336270:CDS
GGTAAACCAGGATCTGGTGT+TGG 0.594224 2_4:+55649067 Msa0336270:CDS
TGGAGTGCGAAGAAACGAAA+GGG 0.603333 2_4:+55644243 None:intergenic
TCAGTTCGCTATTAGCCACC+AGG 0.607710 2_4:-55646483 None:intergenic
TTCATGCAGCAATGTTGCTG+AGG 0.608183 2_4:-55649183 None:intergenic
CTATATATATAATCTATCAA+AGG 0.610931 2_4:+55644377 Msa0336270:five_prime_UTR
CTATAGACTAAGATGTTGGA+AGG 0.611520 2_4:+55646819 Msa0336270:intron
AGTGTCCGAGGGTATGGTGA+AGG 0.614703 2_4:+55646436 Msa0336270:CDS
TACAGGTGGTTCAATCGTTG+GGG 0.618411 2_4:+55646372 Msa0336270:CDS
AATTGCTTATAGAAGGCCAC+GGG 0.629000 2_4:+55645075 Msa0336270:CDS
GGGTATGGTGAAGGAGCAGT+TGG 0.629254 2_4:+55646445 Msa0336270:CDS
TAATTGCTTATAGAAGGCCA+CGG 0.639514 2_4:+55645074 Msa0336270:CDS
TTTAATCTTCAAATAGAACA+AGG 0.640667 2_4:+55646010 Msa0336270:CDS
AATATAAGCAGGGATCGTGA+CGG 0.648266 2_4:+55645688 Msa0336270:CDS
TGAGCAAGACATTCTTCCCG+TGG 0.649237 2_4:-55645091 None:intergenic
TGATGGTCGCAATATAAGCA+GGG 0.653566 2_4:+55645678 Msa0336270:CDS
TCGTCTGACAGACTTACAGG+TGG 0.660288 2_4:+55646358 Msa0336270:intron
ATGGAGTGCGAAGAAACGAA+AGG 0.661827 2_4:+55644242 None:intergenic
TTCTGGGAGATCATGCCTGG+TGG 0.662291 2_4:+55646468 Msa0336270:CDS
AAGACTACCATACTGTCATG+TGG 0.666248 2_4:-55645816 None:intergenic
TCCACATGCAAAATATAGTG+CGG 0.678711 2_4:-55649370 None:intergenic
AGGAACCTGTGAGTTCAAAG+TGG 0.684187 2_4:+55645474 Msa0336270:CDS
TTACACCTCCACTTCCCGAG+CGG 0.695775 2_4:-55645418 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATAAATTATGAATTTTA+AGG + chr2_4:55646602-55646621 Msa0336270:intron 10.0%
!! CTATATATATAATCTATCAA+AGG + chr2_4:55644377-55644396 Msa0336270:five_prime_UTR 15.0%
!!! ACGAAATTGTTTTTATTTAA+TGG + chr2_4:55644413-55644432 Msa0336270:five_prime_UTR 15.0%
!!! AATTTGAATTTTTCTTTAAC+AGG + chr2_4:55644700-55644719 Msa0336270:intron 15.0%
!!! ATATTTTAATTGCTTATAGA+AGG + chr2_4:55645068-55645087 Msa0336270:CDS 15.0%
!!! TTGTTTATGTTTTTGTTTTA+TGG + chr2_4:55645151-55645170 Msa0336270:intron 15.0%
!!! TAAATAAACTTTTGTTTCAA+TGG + chr2_4:55645202-55645221 Msa0336270:intron 15.0%
!!! CTTTATATTACTATTTGTTT+TGG + chr2_4:55645593-55645612 Msa0336270:intron 15.0%
!! ATATAATCACATAGAAAATA+GGG - chr2_4:55646311-55646330 None:intergenic 15.0%
!! TATATAATCACATAGAAAAT+AGG - chr2_4:55646312-55646331 None:intergenic 15.0%
!! ATAAGATAATGATAAACTTT+GGG - chr2_4:55647329-55647348 None:intergenic 15.0%
!!! GTTTTTAAATATTTGCATAA+GGG - chr2_4:55647368-55647387 None:intergenic 15.0%
!! AATTAAAAAACATTCATTTG+AGG + chr2_4:55647507-55647526 Msa0336270:intron 15.0%
!!! TTATTATAGCTCTTATTTAA+AGG - chr2_4:55647890-55647909 None:intergenic 15.0%
!! ATTGGTATAAACTTTATAAA+TGG + chr2_4:55647960-55647979 Msa0336270:intron 15.0%
!! TTGGTATAAACTTTATAAAT+GGG + chr2_4:55647961-55647980 Msa0336270:intron 15.0%
!! TCTTTAATTATTAAGTATGA+TGG - chr2_4:55648495-55648514 None:intergenic 15.0%
!! AAAACAAAACAATCTTAAAG+TGG - chr2_4:55644326-55644345 None:intergenic 20.0%
!! AATAAAAACAATTTCGTAAG+AGG - chr2_4:55644410-55644429 None:intergenic 20.0%
!! TCATTCATTTACAAAATCAT+GGG - chr2_4:55644943-55644962 None:intergenic 20.0%
!! ATCAAACATCCAAATTTATT+TGG + chr2_4:55644995-55645014 Msa0336270:CDS 20.0%
!! AATTTATCTAGATTAACAGT+TGG + chr2_4:55645440-55645459 Msa0336270:CDS 20.0%
!! ATTTATCTAGATTAACAGTT+GGG + chr2_4:55645441-55645460 Msa0336270:CDS 20.0%
!! ATTTGAAGATTAAACTGAAA+AGG - chr2_4:55646004-55646023 None:intergenic 20.0%
!! TTTAATCTTCAAATAGAACA+AGG + chr2_4:55646010-55646029 Msa0336270:CDS 20.0%
!! AAATAGAATACATTAATGCT+TGG + chr2_4:55646214-55646233 Msa0336270:intron 20.0%
!! AATAGAATACATTAATGCTT+GGG + chr2_4:55646215-55646234 Msa0336270:intron 20.0%
!! AATGTGTATATGTTTAATTG+CGG - chr2_4:55646728-55646747 None:intergenic 20.0%
!!! CGGTTAAATATGTTTATTTT+TGG + chr2_4:55647004-55647023 Msa0336270:intron 20.0%
!! TGTTCAATTTAGCTATTTAA+TGG - chr2_4:55647069-55647088 None:intergenic 20.0%
!! ATAGATTTCTCATTTCTTTA+GGG - chr2_4:55647164-55647183 None:intergenic 20.0%
!! TATAGATTTCTCATTTCTTT+AGG - chr2_4:55647165-55647184 None:intergenic 20.0%
!! GATAAGATAATGATAAACTT+TGG - chr2_4:55647330-55647349 None:intergenic 20.0%
!!! GGTTTTTAAATATTTGCATA+AGG - chr2_4:55647369-55647388 None:intergenic 20.0%
!! GAATTAAATTTCTGAGTTTA+TGG + chr2_4:55647394-55647413 Msa0336270:intron 20.0%
!! GTTTAAATAGCAAATTTGTA+TGG - chr2_4:55647830-55647849 None:intergenic 20.0%
!! TGGTATAAACTTTATAAATG+GGG + chr2_4:55647962-55647981 Msa0336270:intron 20.0%
!! ATTTATACCAGTTATACTTT+AGG + chr2_4:55648029-55648048 Msa0336270:intron 20.0%
!! AAAAAAAAAAAGAAGGTTTG+AGG + chr2_4:55648679-55648698 Msa0336270:intron 20.0%
!! CACTAAAAAAATAATGTGTA+TGG - chr2_4:55648970-55648989 None:intergenic 20.0%
!! CTTAGATTTAAATCACAATT+TGG + chr2_4:55649103-55649122 Msa0336270:CDS 20.0%
!!! ATTTTATCATCAATCCATAT+AGG + chr2_4:55649315-55649334 Msa0336270:three_prime_UTR 20.0%
!!! TTGATGCGTTTTTAATTGAA+TGG + chr2_4:55644436-55644455 Msa0336270:exon 25.0%
!!! TGATGCGTTTTTAATTGAAT+GGG + chr2_4:55644437-55644456 Msa0336270:exon 25.0%
! ACGTCTTCAATATAAAGTAT+TGG + chr2_4:55644889-55644908 Msa0336270:intron 25.0%
! GTCATTCATTTACAAAATCA+TGG - chr2_4:55644944-55644963 None:intergenic 25.0%
! AAACATCCAAATTTATTTGG+TGG + chr2_4:55644998-55645017 Msa0336270:CDS 25.0%
!!! TTTTTGTTTTATGGTAAGAG+AGG + chr2_4:55645160-55645179 Msa0336270:intron 25.0%
! ATTCCTAGTTCCTATTTATA+TGG + chr2_4:55645918-55645937 Msa0336270:intron 25.0%
! TGGTTAATAGCCATATAAAT+AGG - chr2_4:55645931-55645950 None:intergenic 25.0%
! AATTCAGATACAAGACTAAT+TGG - chr2_4:55645951-55645970 None:intergenic 25.0%
! TCGTAGCAACAAATTTAAAT+CGG - chr2_4:55646069-55646088 None:intergenic 25.0%
!!! TTTAAATTTGTTGCTACGAA+AGG + chr2_4:55646070-55646089 Msa0336270:CDS 25.0%
! TGTAAATATTGCATACCAAA+GGG - chr2_4:55646513-55646532 None:intergenic 25.0%
! TTGTAAATATTGCATACCAA+AGG - chr2_4:55646514-55646533 None:intergenic 25.0%
! CTCAGAAATTTAATTCATAC+AGG - chr2_4:55647390-55647409 None:intergenic 25.0%
!!! AGAATTTTAATTCAGGTATC+GGG - chr2_4:55647434-55647453 None:intergenic 25.0%
!!! CAGAATTTTAATTCAGGTAT+CGG - chr2_4:55647435-55647454 None:intergenic 25.0%
!!! GGTTTTCAGAATTTTAATTC+AGG - chr2_4:55647441-55647460 None:intergenic 25.0%
! AAACGTAAATTGAGTTCATA+CGG - chr2_4:55647463-55647482 None:intergenic 25.0%
! TATAATGCCATGCATATATA+TGG - chr2_4:55647488-55647507 None:intergenic 25.0%
!!! TCTAGGAACCATTTTATTTA+AGG + chr2_4:55647685-55647704 Msa0336270:intron 25.0%
!!! CTAGGAACCATTTTATTTAA+GGG + chr2_4:55647686-55647705 Msa0336270:intron 25.0%
! AGACAAACCCTTAAATAAAA+TGG - chr2_4:55647696-55647715 None:intergenic 25.0%
!!! CTAATGAGGAACATTTTTTA+TGG - chr2_4:55647938-55647957 None:intergenic 25.0%
! CATAAAAAATGTTCCTCATT+AGG + chr2_4:55647936-55647955 Msa0336270:intron 25.0%
! TATAAACTTTATAAATGGGG+TGG + chr2_4:55647965-55647984 Msa0336270:intron 25.0%
!!! TTTACTTTTTACACCGATTT+TGG - chr2_4:55648429-55648448 None:intergenic 25.0%
! AGTTTATTGCTTTGTACTTT+AGG - chr2_4:55648519-55648538 None:intergenic 25.0%
! TGTTAATCTCTTGAAAATTC+AGG + chr2_4:55649025-55649044 Msa0336270:intron 25.0%
! TAGCATAATCAACTTGAAAA+TGG - chr2_4:55649129-55649148 None:intergenic 25.0%
! CTATTAATGCATTTAAGCAA+AGG + chr2_4:55649146-55649165 Msa0336270:CDS 25.0%
AAACAATTTCGTAAGAGGTT+TGG - chr2_4:55644405-55644424 None:intergenic 30.0%
AATCCTCTTTCACTAGTAAT+TGG + chr2_4:55644732-55644751 Msa0336270:CDS 30.0%
ATCCTCTTTCACTAGTAATT+GGG + chr2_4:55644733-55644752 Msa0336270:CDS 30.0%
TCACTTCCACCAAATAAATT+TGG - chr2_4:55645007-55645026 None:intergenic 30.0%
!! TGTTTCAATGGATTTTTCTG+TGG + chr2_4:55645214-55645233 Msa0336270:intron 30.0%
AATTGTTTATAGGGATACCA+TGG - chr2_4:55645394-55645413 None:intergenic 30.0%
!! AACCAAGGATTTTAGTATTC+CGG + chr2_4:55645731-55645750 Msa0336270:intron 30.0%
TAGCCATATAAATAGGAACT+AGG - chr2_4:55645924-55645943 None:intergenic 30.0%
ATTATCCACTTAGAAAGAAC+AGG - chr2_4:55646040-55646059 None:intergenic 30.0%
!! CTCTATTTCAGGTTGAAATT+AGG - chr2_4:55646285-55646304 None:intergenic 30.0%
AAATAGGGTAACTCTATTTC+AGG - chr2_4:55646296-55646315 None:intergenic 30.0%
TAACATGTGCTGAAAATTCA+CGG - chr2_4:55646580-55646599 None:intergenic 30.0%
TTCACTATAGACTAAGATGT+TGG + chr2_4:55646815-55646834 Msa0336270:intron 30.0%
AAATCGTTGGATGTAAATGT+TGG - chr2_4:55646978-55646997 None:intergenic 30.0%
AGCTATTTAATGGTACCAAT+GGG - chr2_4:55647059-55647078 None:intergenic 30.0%
TAGCTATTTAATGGTACCAA+TGG - chr2_4:55647060-55647079 None:intergenic 30.0%
ACAAAAAACAATAGGCTACA+TGG - chr2_4:55647119-55647138 None:intergenic 30.0%
GATTCAGGACAAAAAACAAT+AGG - chr2_4:55647127-55647146 None:intergenic 30.0%
GATTATATCACTCAAGATTC+AGG - chr2_4:55647142-55647161 None:intergenic 30.0%
TTTCTGTCAAAATGTGAGAA+TGG + chr2_4:55647187-55647206 Msa0336270:intron 30.0%
AACACTGCAAGCATAAATTA+AGG + chr2_4:55647266-55647285 Msa0336270:intron 30.0%
TATTTGCATAAGGGCTATTT+GGG - chr2_4:55647359-55647378 None:intergenic 30.0%
ATATTTGCATAAGGGCTATT+TGG - chr2_4:55647360-55647379 None:intergenic 30.0%
AACGTAAATTGAGTTCATAC+GGG - chr2_4:55647462-55647481 None:intergenic 30.0%
AGAGTATAACCATATGTGTA+AGG - chr2_4:55647533-55647552 None:intergenic 30.0%
TGCGTAAAATCTCCATTATA+TGG + chr2_4:55647589-55647608 Msa0336270:intron 30.0%
GCGTAAAATCTCCATTATAT+GGG + chr2_4:55647590-55647609 Msa0336270:intron 30.0%
ATTCCATCAAACCCATATAA+TGG - chr2_4:55647604-55647623 None:intergenic 30.0%
TATATGGGTTTGATGGAATA+AGG + chr2_4:55647605-55647624 Msa0336270:intron 30.0%
ATATGGGTTTGATGGAATAA+GGG + chr2_4:55647606-55647625 Msa0336270:intron 30.0%
ACTCTAGTAGTTATAGTAGT+TGG + chr2_4:55647660-55647679 Msa0336270:intron 30.0%
!! TTTTATGGTCTACTAGTTTC+TGG - chr2_4:55647923-55647942 None:intergenic 30.0%
AAATGTTCCTCATTAGGTAT+TGG + chr2_4:55647942-55647961 Msa0336270:intron 30.0%
GTTTATACCAATACCTAATG+AGG - chr2_4:55647952-55647971 None:intergenic 30.0%
TGGTATAAATTAGCCAATGT+CGG - chr2_4:55648019-55648038 None:intergenic 30.0%
! ACTGTTTTCATAAGCTATCT+TGG + chr2_4:55648183-55648202 Msa0336270:intron 30.0%
AACAGAACATTACCCTTAAA+AGG + chr2_4:55648603-55648622 Msa0336270:intron 30.0%
ACAGAACATTACCCTTAAAA+GGG + chr2_4:55648604-55648623 Msa0336270:intron 30.0%
! GAGTACATTTGAAATGGTTT+CGG - chr2_4:55648999-55649018 None:intergenic 30.0%
! ACGCATTTCATTTTCCTATA+TGG - chr2_4:55649332-55649351 None:intergenic 30.0%
GTGTTTGTTTCGTAACGTTA+GGG - chr2_4:55644354-55644373 None:intergenic 35.0%
TGTGTTTGTTTCGTAACGTT+AGG - chr2_4:55644355-55644374 None:intergenic 35.0%
ATTTGATGCTCAATACCTTC+AGG + chr2_4:55644618-55644637 Msa0336270:CDS 35.0%
GAGCTGAGAAAAATGAATAG+AGG - chr2_4:55644649-55644668 None:intergenic 35.0%
GCTGCATATGTTGAAGATAT+TGG + chr2_4:55644913-55644932 Msa0336270:intron 35.0%
TGAGAAGCTTGATGTTTCAT+GGG + chr2_4:55645024-55645043 Msa0336270:CDS 35.0%
TAATTGCTTATAGAAGGCCA+CGG + chr2_4:55645074-55645093 Msa0336270:CDS 35.0%
! GATTTTTCTGTGGCAATTAG+AGG + chr2_4:55645224-55645243 Msa0336270:intron 35.0%
AGCGGGAGAAATTGTTTATA+GGG - chr2_4:55645403-55645422 None:intergenic 35.0%
TATAAACAATTTCTCCCGCT+CGG + chr2_4:55645403-55645422 Msa0336270:CDS 35.0%
ATCTAGATTAACAGTTGGGA+TGG + chr2_4:55645445-55645464 Msa0336270:CDS 35.0%
CACAACCAGCATAAAATTTG+AGG + chr2_4:55645502-55645521 Msa0336270:CDS 35.0%
! CCAGCATAAAATTTGAGGTT+CGG + chr2_4:55645507-55645526 Msa0336270:intron 35.0%
AACCGGAATACTAAAATCCT+TGG - chr2_4:55645736-55645755 None:intergenic 35.0%
!! CAGTTCGACATTTTGAAAAC+CGG - chr2_4:55645753-55645772 None:intergenic 35.0%
ATGTACATTGCTTATTGCAG+TGG + chr2_4:55645789-55645808 Msa0336270:intron 35.0%
ATAGGAACTAGGAATCAAAC+TGG - chr2_4:55645913-55645932 None:intergenic 35.0%
GTATTCCTGTTCTTTCTAAG+TGG + chr2_4:55646032-55646051 Msa0336270:CDS 35.0%
TAATGCTTGGGTTCACTAAT+AGG + chr2_4:55646227-55646246 Msa0336270:intron 35.0%
! CTTACCAAGCATTTTCCATT+GGG + chr2_4:55646404-55646423 Msa0336270:CDS 35.0%
! TTACCAAGCATTTTCCATTG+GGG + chr2_4:55646405-55646424 Msa0336270:CDS 35.0%
CTATAGACTAAGATGTTGGA+AGG + chr2_4:55646819-55646838 Msa0336270:intron 35.0%
GCAAAATGATATTACTCACC+AGG - chr2_4:55646894-55646913 None:intergenic 35.0%
!!! ACATCCAACGATTTTTAGCA+CGG + chr2_4:55646984-55647003 Msa0336270:intron 35.0%
TTAACCGTGCTAAAAATCGT+TGG - chr2_4:55646991-55647010 None:intergenic 35.0%
!!! GTTTATTTTTGGTTCTGCTG+AGG + chr2_4:55647015-55647034 Msa0336270:intron 35.0%
! TTAATGGTACCAATGGGTTT+AGG - chr2_4:55647053-55647072 None:intergenic 35.0%
TGTCAAAATGTGAGAATGGT+TGG + chr2_4:55647191-55647210 Msa0336270:intron 35.0%
AAAATGTGAGAATGGTTGGT+TGG + chr2_4:55647195-55647214 Msa0336270:intron 35.0%
!! TTGCAGTGTTTTTGCTAACT+CGG - chr2_4:55647256-55647275 None:intergenic 35.0%
ACTTACACCCATAAAAGATC+CGG + chr2_4:55647298-55647317 Msa0336270:intron 35.0%
TGATAAACTTTGGGTGTAAC+CGG - chr2_4:55647320-55647339 None:intergenic 35.0%
CGTTTGACCATATATATGCA+TGG + chr2_4:55647478-55647497 Msa0336270:intron 35.0%
TCTCCATTATATGGGTTTGA+TGG + chr2_4:55647598-55647617 Msa0336270:intron 35.0%
! AGTTATAGTAGTTGGTCTCT+AGG + chr2_4:55647668-55647687 Msa0336270:intron 35.0%
AAACTTTATAAATGGGGTGG+AGG + chr2_4:55647968-55647987 Msa0336270:intron 35.0%
AACAGTGCCTAAAGTATAAC+TGG - chr2_4:55648039-55648058 None:intergenic 35.0%
TGGGAGAGCTTATGAAAAAT+TGG - chr2_4:55648264-55648283 None:intergenic 35.0%
! TTGTTGTGAGACTCTGATTT+TGG - chr2_4:55648328-55648347 None:intergenic 35.0%
!! GATTTTGGTCATTGCAATAG+CGG - chr2_4:55648414-55648433 None:intergenic 35.0%
GCTATTGCAATGACCAAAAT+CGG + chr2_4:55648413-55648432 Msa0336270:intron 35.0%
GACAGAACTGAACTAAAAGT+AGG + chr2_4:55648549-55648568 Msa0336270:intron 35.0%
TTGTCAATAGCACGATATAG+AGG - chr2_4:55648840-55648859 None:intergenic 35.0%
GTGACAAAAAACAGAAGTTG+TGG - chr2_4:55648902-55648921 None:intergenic 35.0%
! GCATGAGAGTACATTTGAAA+TGG - chr2_4:55649005-55649024 None:intergenic 35.0%
ATTCAGGTAATCCAGCTTTA+AGG + chr2_4:55649041-55649060 Msa0336270:intron 35.0%
! AAGCAAAGGACTCTCTATTT+TGG + chr2_4:55649160-55649179 Msa0336270:CDS 35.0%
AAATCCTTAAACGCAGAAGA+AGG + chr2_4:55649204-55649223 Msa0336270:exon 35.0%
CTTCTATAGATCTTTGTCGT+GGG - chr2_4:55649265-55649284 None:intergenic 35.0%
TCTTCTATAGATCTTTGTCG+TGG - chr2_4:55649266-55649285 None:intergenic 35.0%
CGACAAAGATCTATAGAAGA+TGG + chr2_4:55649266-55649285 Msa0336270:three_prime_UTR 35.0%
TCCACATGCAAAATATAGTG+CGG - chr2_4:55649373-55649392 None:intergenic 35.0%
AATTGTAACCTTTGCCAGCA+TGG - chr2_4:55644478-55644497 None:intergenic 40.0%
TGAATAGAGGTGAAACCTGA+AGG - chr2_4:55644636-55644655 None:intergenic 40.0%
CTCCCAATTACTAGTGAAAG+AGG - chr2_4:55644738-55644757 None:intergenic 40.0%
CTCTTTCACTAGTAATTGGG+AGG + chr2_4:55644736-55644755 Msa0336270:CDS 40.0%
CAGTTTGATCAGTAGTGCAT+TGG + chr2_4:55644768-55644787 Msa0336270:intron 40.0%
AGTAGTGCATTGGATTGTTG+CGG + chr2_4:55644778-55644797 Msa0336270:intron 40.0%
ATTGTTGCGGCTATAAAGCA+CGG + chr2_4:55644791-55644810 Msa0336270:intron 40.0%
!! ATAGCCGCATGTGTTTTTGT+CGG + chr2_4:55644857-55644876 Msa0336270:intron 40.0%
GTGAGAAGCTTGATGTTTCA+TGG + chr2_4:55645023-55645042 Msa0336270:CDS 40.0%
CTTGATGTTTCATGGGACAA+GGG + chr2_4:55645031-55645050 Msa0336270:CDS 40.0%
AATTGCTTATAGAAGGCCAC+GGG + chr2_4:55645075-55645094 Msa0336270:CDS 40.0%
TGAAAGAGAATGCTGCAAAG+GGG - chr2_4:55645357-55645376 None:intergenic 40.0%
GTGAAAGAGAATGCTGCAAA+GGG - chr2_4:55645358-55645377 None:intergenic 40.0%
CATTCTCTTTCACCAGAGAT+CGG + chr2_4:55645365-55645384 Msa0336270:CDS 40.0%
GAGCGGGAGAAATTGTTTAT+AGG - chr2_4:55645404-55645423 None:intergenic 40.0%
ATAAACAATTTCTCCCGCTC+GGG + chr2_4:55645404-55645423 Msa0336270:CDS 40.0%
! CCGAACCTCAAATTTTATGC+TGG - chr2_4:55645510-55645529 None:intergenic 40.0%
! ATGCGTCTTTTCGTGAATCA+AGG + chr2_4:55645530-55645549 Msa0336270:intron 40.0%
ATGATGGTCGCAATATAAGC+AGG + chr2_4:55645677-55645696 Msa0336270:CDS 40.0%
TGATGGTCGCAATATAAGCA+GGG + chr2_4:55645678-55645697 Msa0336270:CDS 40.0%
AATATAAGCAGGGATCGTGA+CGG + chr2_4:55645688-55645707 Msa0336270:CDS 40.0%
AAGACTACCATACTGTCATG+TGG - chr2_4:55645819-55645838 None:intergenic 40.0%
GCTACGAAAGGAATCAAACT+TGG + chr2_4:55646082-55646101 Msa0336270:CDS 40.0%
! AACCTTGTCAAGAGAAGTGT+TGG - chr2_4:55646109-55646128 None:intergenic 40.0%
AACACTTCTCTTGACAAGGT+TGG + chr2_4:55646108-55646127 Msa0336270:intron 40.0%
TGTAAGTCTGTCAGACGAAA+AGG - chr2_4:55646356-55646375 None:intergenic 40.0%
! TTTTCGTCTGACAGACTTAC+AGG + chr2_4:55646355-55646374 Msa0336270:intron 40.0%
TTACAGGTGGTTCAATCGTT+GGG + chr2_4:55646371-55646390 Msa0336270:CDS 40.0%
CCAATGGAAAATGCTTGGTA+AGG - chr2_4:55646406-55646425 None:intergenic 40.0%
! CCTTACCAAGCATTTTCCAT+TGG + chr2_4:55646403-55646422 Msa0336270:CDS 40.0%
! TACCAAGCATTTTCCATTGG+GGG + chr2_4:55646406-55646425 Msa0336270:CDS 40.0%
TTTCAAATCAGTCATGCACG+GGG - chr2_4:55646659-55646678 None:intergenic 40.0%
CTTTCAAATCAGTCATGCAC+GGG - chr2_4:55646660-55646679 None:intergenic 40.0%
GCTTTCAAATCAGTCATGCA+CGG - chr2_4:55646661-55646680 None:intergenic 40.0%
!!! TCATCTGCTTTCTTTTTCGG+AGG - chr2_4:55646705-55646724 None:intergenic 40.0%
! CGGTCATCTGCTTTCTTTTT+CGG - chr2_4:55646708-55646727 None:intergenic 40.0%
ATTCACAGGGATTTCATCTC+TGG - chr2_4:55647092-55647111 None:intergenic 40.0%
GCTACATGGAGATATTCACA+GGG - chr2_4:55647105-55647124 None:intergenic 40.0%
! GGTGTAACCGGATCTTTTAT+GGG - chr2_4:55647308-55647327 None:intergenic 40.0%
! CATTTGAGGCCTTACACATA+TGG + chr2_4:55647521-55647540 Msa0336270:intron 40.0%
TCCAACAAATGAACCGACAT+TGG + chr2_4:55648003-55648022 Msa0336270:intron 40.0%
AAGCACTTGCGAGATTGTTT+GGG - chr2_4:55648283-55648302 None:intergenic 40.0%
TAAGCACTTGCGAGATTGTT+TGG - chr2_4:55648284-55648303 None:intergenic 40.0%
! GTGAGACTCTGATTTTGGAT+TGG - chr2_4:55648323-55648342 None:intergenic 40.0%
! GTCAATTCGAGCCCTTTTAA+GGG - chr2_4:55648618-55648637 None:intergenic 40.0%
! TGTCAATTCGAGCCCTTTTA+AGG - chr2_4:55648619-55648638 None:intergenic 40.0%
! CTAAGTGCTATTGCTGACTA+TGG + chr2_4:55648766-55648785 Msa0336270:intron 40.0%
GATATAGAGGAATAGCGTAG+TGG - chr2_4:55648827-55648846 None:intergenic 40.0%
! TCCGCACTATATTTTGCATG+TGG + chr2_4:55649369-55649388 Msa0336270:three_prime_UTR 40.0%
GTGTCCGACAAAAACACATG+CGG - chr2_4:55644864-55644883 None:intergenic 45.0%
!! CATGTGTTTTTGTCGGACAC+TGG + chr2_4:55644864-55644883 Msa0336270:intron 45.0%
GCTTGATGTTTCATGGGACA+AGG + chr2_4:55645030-55645049 Msa0336270:CDS 45.0%
TCTTGCTCATCAGTCTTTCG+TGG + chr2_4:55645105-55645124 Msa0336270:CDS 45.0%
ATGGTAAGAGAGGTTCTGCT+AGG + chr2_4:55645170-55645189 Msa0336270:intron 45.0%
GGTGAAAGAGAATGCTGCAA+AGG - chr2_4:55645359-55645378 None:intergenic 45.0%
ATACCATGGATTCCGATCTC+TGG - chr2_4:55645380-55645399 None:intergenic 45.0%
AACAGTTGGGATGGATCTGA+AGG + chr2_4:55645454-55645473 Msa0336270:CDS 45.0%
AGGAACCTGTGAGTTCAAAG+TGG + chr2_4:55645474-55645493 Msa0336270:CDS 45.0%
GTTCGTCCATTGAACGATGA+TGG + chr2_4:55645661-55645680 Msa0336270:CDS 45.0%
TTGCGACCATCATCGTTCAA+TGG - chr2_4:55645670-55645689 None:intergenic 45.0%
ATATAAGCAGGGATCGTGAC+GGG + chr2_4:55645689-55645708 Msa0336270:CDS 45.0%
!! CTTTGACTTGCAGGTAACCA+AGG + chr2_4:55645716-55645735 Msa0336270:intron 45.0%
GCAAGAGTCTCAACACTCAA+AGG + chr2_4:55645842-55645861 Msa0336270:CDS 45.0%
GACCAACACTTCTCTTGACA+AGG + chr2_4:55646104-55646123 Msa0336270:CDS 45.0%
CTTACAGGTGGTTCAATCGT+TGG + chr2_4:55646370-55646389 Msa0336270:CDS 45.0%
TACAGGTGGTTCAATCGTTG+GGG + chr2_4:55646372-55646391 Msa0336270:CDS 45.0%
! ACCAAGCATTTTCCATTGGG+GGG + chr2_4:55646407-55646426 Msa0336270:CDS 45.0%
GACTAAGATGTTGGAAGGTG+CGG + chr2_4:55646824-55646843 Msa0336270:intron 45.0%
!! GTTGGAAGGTGCGGTTTTTA+TGG + chr2_4:55646833-55646852 Msa0336270:CDS 45.0%
!! GGTGCGGTTTTTATGGATTG+CGG + chr2_4:55646840-55646859 Msa0336270:CDS 45.0%
TGGATTGCGGAACAGATTTG+CGG + chr2_4:55646853-55646872 Msa0336270:CDS 45.0%
CTGAAACCACCTAAACCCAT+TGG + chr2_4:55647041-55647060 Msa0336270:intron 45.0%
! ATGGTACCAATGGGTTTAGG+TGG - chr2_4:55647050-55647069 None:intergenic 45.0%
GGCTACATGGAGATATTCAC+AGG - chr2_4:55647106-55647125 None:intergenic 45.0%
! TGAGAATGGTTGGTTGGAGT+AGG + chr2_4:55647201-55647220 Msa0336270:intron 45.0%
! GAGAATGGTTGGTTGGAGTA+GGG + chr2_4:55647202-55647221 Msa0336270:intron 45.0%
! AGGGATGGTCTGTTTTGTGT+TGG + chr2_4:55647225-55647244 Msa0336270:intron 45.0%
! GGGATGGTCTGTTTTGTGTT+GGG + chr2_4:55647226-55647245 Msa0336270:intron 45.0%
! GGGTGTAACCGGATCTTTTA+TGG - chr2_4:55647309-55647328 None:intergenic 45.0%
!! GCCAATGTCGGTTCATTTGT+TGG - chr2_4:55648007-55648026 None:intergenic 45.0%
TCGCCCTGAAACTGTAATAG+CGG + chr2_4:55648706-55648725 Msa0336270:intron 45.0%
CGTCCGCTATTACAGTTTCA+GGG - chr2_4:55648712-55648731 None:intergenic 45.0%
!! TGAAACTGTAATAGCGGACG+CGG + chr2_4:55648712-55648731 Msa0336270:intron 45.0%
GTCAGCAATAGCACTTAGTG+CGG - chr2_4:55648764-55648783 None:intergenic 45.0%
ATAGAGGAATAGCGTAGTGG+TGG - chr2_4:55648824-55648843 None:intergenic 45.0%
!! GGTAATCCAGCTTTAAGGCA+TGG + chr2_4:55649046-55649065 Msa0336270:intron 45.0%
GGTTTACCATGCCTTAAAGC+TGG - chr2_4:55649055-55649074 None:intergenic 45.0%
!! GCTTTAAGGCATGGTAAACC+AGG + chr2_4:55649055-55649074 Msa0336270:CDS 45.0%
! TCTGGTGTTGGATTGGGATA+TGG + chr2_4:55649079-55649098 Msa0336270:CDS 45.0%
TTCATGCAGCAATGTTGCTG+AGG - chr2_4:55649186-55649205 None:intergenic 45.0%
GCAACCTTCTTCTGCGTTTA+AGG - chr2_4:55649211-55649230 None:intergenic 45.0%
!!! TTCAATTTTTTTTATAATAA+CGG + chr2_4:55644671-55644690 Msa0336270:intron 5.0%
!!! TTTTTTAAAAAAAAAAAAGA+AGG + chr2_4:55648672-55648691 Msa0336270:intron 5.0%
!! GCTCAAAAGAGCATCCATGC+TGG + chr2_4:55644461-55644480 Msa0336270:CDS 50.0%
!! AAGAGCATCCATGCTGGCAA+AGG + chr2_4:55644467-55644486 Msa0336270:CDS 50.0%
TGAGCAAGACATTCTTCCCG+TGG - chr2_4:55645094-55645113 None:intergenic 50.0%
TCATCAGTCTTTCGTGGTGC+AGG + chr2_4:55645111-55645130 Msa0336270:CDS 50.0%
AGAGAGGTTCTGCTAGGCAA+TGG + chr2_4:55645176-55645195 Msa0336270:intron 50.0%
TCACCAGAGATCGGAATCCA+TGG + chr2_4:55645374-55645393 Msa0336270:CDS 50.0%
CTGCTCCACTTTGAACTCAC+AGG - chr2_4:55645482-55645501 None:intergenic 50.0%
TGGACGAACATGCTGCATGA+TGG - chr2_4:55645650-55645669 None:intergenic 50.0%
!! ACGGGTTTGCTTTGACTTGC+AGG + chr2_4:55645707-55645726 Msa0336270:CDS 50.0%
TGGCAGTCCACATGACAGTA+TGG + chr2_4:55645809-55645828 Msa0336270:CDS 50.0%
GTCTGTCAGACGAAAAGGCA+TGG - chr2_4:55646351-55646370 None:intergenic 50.0%
TCGTCTGACAGACTTACAGG+TGG + chr2_4:55646358-55646377 Msa0336270:intron 50.0%
TGGTTCAATCGTTGGGGACA+TGG + chr2_4:55646378-55646397 Msa0336270:CDS 50.0%
! GTGAAGGAGCAGTTGGTTCT+GGG + chr2_4:55646452-55646471 Msa0336270:CDS 50.0%
TCAGTTCGCTATTAGCCACC+AGG - chr2_4:55646486-55646505 None:intergenic 50.0%
! TAGCGAACTGACTCTCCCTT+TGG + chr2_4:55646495-55646514 Msa0336270:CDS 50.0%
!! CGGACTGGTTATCTTGTACC+TGG + chr2_4:55646873-55646892 Msa0336270:CDS 50.0%
! AATGGTTGGTTGGAGTAGGG+AGG + chr2_4:55647205-55647224 Msa0336270:intron 50.0%
! ATGGTTGGTTGGAGTAGGGA+GGG + chr2_4:55647206-55647225 Msa0336270:intron 50.0%
! GGTGCTATGCGACACTATCT+GGG - chr2_4:55648359-55648378 None:intergenic 50.0%
TCTGCTGTACCGCTATAGGT+CGG - chr2_4:55648380-55648399 None:intergenic 50.0%
GCTATCTGCTGTACCGCTAT+AGG - chr2_4:55648384-55648403 None:intergenic 50.0%
ATAGCGGTACAGCAGATAGC+AGG + chr2_4:55648384-55648403 Msa0336270:intron 50.0%
GCGTCCGCTATTACAGTTTC+AGG - chr2_4:55648713-55648732 None:intergenic 50.0%
! CTATTGCTGACTATGGCTCG+TGG + chr2_4:55648773-55648792 Msa0336270:intron 50.0%
GGAATAGCGTAGTGGTGGTA+GGG - chr2_4:55648819-55648838 None:intergenic 50.0%
AGGAATAGCGTAGTGGTGGT+AGG - chr2_4:55648820-55648839 None:intergenic 50.0%
AGGCATGGTAAACCAGGATC+TGG + chr2_4:55649061-55649080 Msa0336270:CDS 50.0%
GGTAAACCAGGATCTGGTGT+TGG + chr2_4:55649067-55649086 Msa0336270:CDS 50.0%
! ACCAGGATCTGGTGTTGGAT+TGG + chr2_4:55649072-55649091 Msa0336270:CDS 50.0%
! CCAGGATCTGGTGTTGGATT+GGG + chr2_4:55649073-55649092 Msa0336270:CDS 50.0%
CAGTCTTTCGTGGTGCAGGT+TGG + chr2_4:55645115-55645134 Msa0336270:intron 55.0%
AATTTCTCCCGCTCGGGAAG+TGG + chr2_4:55645410-55645429 Msa0336270:CDS 55.0%
TTACACCTCCACTTCCCGAG+CGG - chr2_4:55645421-55645440 None:intergenic 55.0%
AAGGTCATGCGCTCAGTCAG+TGG - chr2_4:55645985-55646004 None:intergenic 55.0%
GCCCCCCAATGGAAAATGCT+TGG - chr2_4:55646411-55646430 None:intergenic 55.0%
! GCATTTTCCATTGGGGGGCT+CGG + chr2_4:55646412-55646431 Msa0336270:CDS 55.0%
! AGTGTCCGAGGGTATGGTGA+AGG + chr2_4:55646436-55646455 Msa0336270:CDS 55.0%
CTGCTCCTTCACCATACCCT+CGG - chr2_4:55646444-55646463 None:intergenic 55.0%
GGGTATGGTGAAGGAGCAGT+TGG + chr2_4:55646445-55646464 Msa0336270:CDS 55.0%
! GGTGAAGGAGCAGTTGGTTC+TGG + chr2_4:55646451-55646470 Msa0336270:CDS 55.0%
!! TGGTTCTGGGAGATCATGCC+TGG + chr2_4:55646465-55646484 Msa0336270:CDS 55.0%
! TTCTGGGAGATCATGCCTGG+TGG + chr2_4:55646468-55646487 Msa0336270:CDS 55.0%
TGCGGAACAGATTTGCGGAC+TGG + chr2_4:55646858-55646877 Msa0336270:CDS 55.0%
TTGGTTGGAGTAGGGAGGGA+TGG + chr2_4:55647210-55647229 Msa0336270:intron 55.0%
GGGAGCTTCAGTGTCAATGC+AGG + chr2_4:55647626-55647645 Msa0336270:intron 55.0%
!! CGGTGCTATGCGACACTATC+TGG - chr2_4:55648360-55648379 None:intergenic 55.0%
!! CGCATAGCACCGACCTATAG+CGG + chr2_4:55648368-55648387 Msa0336270:intron 55.0%
!! TGTAATAGCGGACGCGGTAG+CGG + chr2_4:55648718-55648737 Msa0336270:intron 55.0%
AGCGTAGTGGTGGTAGGGTT+CGG - chr2_4:55648814-55648833 None:intergenic 55.0%
CCCAATCCAACACCAGATCC+TGG - chr2_4:55649076-55649095 None:intergenic 55.0%
TACACCTCCACTTCCCGAGC+GGG - chr2_4:55645420-55645439 None:intergenic 60.0%
!! CTCGGAAGTGTCCGAGGGTA+TGG + chr2_4:55646430-55646449 Msa0336270:CDS 60.0%
TTCTCCCGCTCGGGAAGTGG+AGG + chr2_4:55645413-55645432 Msa0336270:CDS 65.0%
GACACTTCCGAGCCCCCCAA+TGG - chr2_4:55646422-55646441 None:intergenic 65.0%
!! GGGGGCTCGGAAGTGTCCGA+GGG + chr2_4:55646425-55646444 Msa0336270:CDS 70.0%
! GCGGACGCGGTAGCGGTTTG+TGG + chr2_4:55648725-55648744 Msa0336270:intron 70.0%
!! GGGGGGCTCGGAAGTGTCCG+AGG + chr2_4:55646424-55646443 Msa0336270:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55644251 55649421 55644251 ID=Msa0336270;Name=Msa0336270
chr2_4 mRNA 55644251 55649421 55644251 ID=Msa0336270-mRNA-1;Parent=Msa0336270;Name=Msa0336270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=204|1|1|1|1|1|11|217|360
chr2_4 exon 55644251 55644488 55644251 ID=Msa0336270-mRNA-1:exon:16873;Parent=Msa0336270-mRNA-1
chr2_4 exon 55644573 55644639 55644573 ID=Msa0336270-mRNA-1:exon:16874;Parent=Msa0336270-mRNA-1
chr2_4 exon 55644722 55644757 55644722 ID=Msa0336270-mRNA-1:exon:16875;Parent=Msa0336270-mRNA-1
chr2_4 exon 55644988 55645132 55644988 ID=Msa0336270-mRNA-1:exon:16876;Parent=Msa0336270-mRNA-1
chr2_4 exon 55645365 55645523 55645365 ID=Msa0336270-mRNA-1:exon:16877;Parent=Msa0336270-mRNA-1
chr2_4 exon 55645658 55645728 55645658 ID=Msa0336270-mRNA-1:exon:16878;Parent=Msa0336270-mRNA-1
chr2_4 exon 55645809 55645887 55645809 ID=Msa0336270-mRNA-1:exon:16879;Parent=Msa0336270-mRNA-1
chr2_4 exon 55646010 55646125 55646010 ID=Msa0336270-mRNA-1:exon:16880;Parent=Msa0336270-mRNA-1
chr2_4 exon 55646369 55646516 55646369 ID=Msa0336270-mRNA-1:exon:16881;Parent=Msa0336270-mRNA-1
chr2_4 exon 55646825 55646894 55646825 ID=Msa0336270-mRNA-1:exon:16882;Parent=Msa0336270-mRNA-1
chr2_4 exon 55649047 55649421 55649047 ID=Msa0336270-mRNA-1:exon:16883;Parent=Msa0336270-mRNA-1
chr2_4 five_prime_UTR 55644251 55644454 55644251 ID=Msa0336270-mRNA-1:five_prime_utr;Parent=Msa0336270-mRNA-1
chr2_4 CDS 55644455 55644488 55644455 ID=Msa0336270-mRNA-1:cds;Parent=Msa0336270-mRNA-1
chr2_4 CDS 55644573 55644639 55644573 ID=Msa0336270-mRNA-1:cds;Parent=Msa0336270-mRNA-1
chr2_4 CDS 55644722 55644757 55644722 ID=Msa0336270-mRNA-1:cds;Parent=Msa0336270-mRNA-1
chr2_4 CDS 55644988 55645132 55644988 ID=Msa0336270-mRNA-1:cds;Parent=Msa0336270-mRNA-1
chr2_4 CDS 55645365 55645523 55645365 ID=Msa0336270-mRNA-1:cds;Parent=Msa0336270-mRNA-1
chr2_4 CDS 55645658 55645728 55645658 ID=Msa0336270-mRNA-1:cds;Parent=Msa0336270-mRNA-1
chr2_4 CDS 55645809 55645887 55645809 ID=Msa0336270-mRNA-1:cds;Parent=Msa0336270-mRNA-1
chr2_4 CDS 55646010 55646125 55646010 ID=Msa0336270-mRNA-1:cds;Parent=Msa0336270-mRNA-1
chr2_4 CDS 55646369 55646516 55646369 ID=Msa0336270-mRNA-1:cds;Parent=Msa0336270-mRNA-1
chr2_4 CDS 55646825 55646894 55646825 ID=Msa0336270-mRNA-1:cds;Parent=Msa0336270-mRNA-1
chr2_4 CDS 55649047 55649204 55649047 ID=Msa0336270-mRNA-1:cds;Parent=Msa0336270-mRNA-1
chr2_4 three_prime_UTR 55649205 55649421 55649205 ID=Msa0336270-mRNA-1:three_prime_utr;Parent=Msa0336270-mRNA-1
Gene Sequence

>Msa0336270

ATGGGAGCTCAAAAGAGCATCCATGCTGGCAAAGCAAAGATTGATGTTAATGTTGATTTTACTCACAAGCTTTGTACTTATTTGATGCTCAATACCTTCAGGAGTGATGACAATCCTCTTTCACTAGTAATTGGGAGTCTCTGTATCAAACATCCAAATTTATTTGGTGGAAGTGAGAAGCTTGATGTTTCATGGGACAAGGGTTTGTATGATTCAAATATTTTAATTGCTTATAGAAGGCCACGGGAAGAATGTCTTGCTCATCAGTCTTTCGTGGTGCAGCATTCTCTTTCACCAGAGATCGGAATCCATGGTATCCCTATAAACAATTTCTCCCGCTCGGGAAGTGGAGGTGTAAATTTATCTAGATTAACAGTTGGGATGGATCTGAAGGAACCTGTGAGTTCAAAGTGGAGCAGCACAACCAGCATAAAATTTGAGCATGTTCGTCCATTGAACGATGATGGTCGCAATATAAGCAGGGATCGTGACGGGTTTGCTTTGACTTGCAGTGGCAGTCCACATGACAGTATGGTAGTCTTAAAGCAAGAGTCTCAACACTCAAAGGCAAACGATCATAGCTTTTTTCATTTTAATCTTCAAATAGAACAAGGTATTCCTGTTCTTTCTAAGTGGATAATTTTCAACCGATTTAAATTTGTTGCTACGAAAGGAATCAAACTTGGACCAACACTTCTCTTGACAAGACTTACAGGTGGTTCAATCGTTGGGGACATGGCTCCTTACCAAGCATTTTCCATTGGGGGGCTCGGAAGTGTCCGAGGGTATGGTGAAGGAGCAGTTGGTTCTGGGAGATCATGCCTGGTGGCTAATAGCGAACTGACTCTCCCTTTGACTAAGATGTTGGAAGGTGCGGTTTTTATGGATTGCGGAACAGATTTGCGGACTGGTTATCTTGTACCTGGTAATCCAGCTTTAAGGCATGGTAAACCAGGATCTGGTGTTGGATTGGGATATGGACTTAGATTTAAATCACAATTTGGCCATTTTCAAGTTGATTATGCTATTAATGCATTTAAGCAAAGGACTCTCTATTTTGGCCTCAGCAACATTGCTGCATGA

Protein sequence

>Msa0336270

MGAQKSIHAGKAKIDVNVDFTHKLCTYLMLNTFRSDDNPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNILIAYRRPREECLAHQSFVVQHSLSPEIGIHGIPINNFSRSGSGGVNLSRLTVGMDLKEPVSSKWSSTTSIKFEHVRPLNDDGRNISRDRDGFALTCSGSPHDSMVVLKQESQHSKANDHSFFHFNLQIEQGIPVLSKWIIFNRFKFVATKGIKLGPTLLLTRLTGGSIVGDMAPYQAFSIGGLGSVRGYGEGAVGSGRSCLVANSELTLPLTKMLEGAVFMDCGTDLRTGYLVPGNPALRHGKPGSGVGLGYGLRFKSQFGHFQVDYAINAFKQRTLYFGLSNIAA*