AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1387090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387090 MtrunA17_Chr5g0414901 81.579 76 14 0 3 78 315 390 6.65e-41 139
Msa1387090 MtrunA17_Chr5g0443721 66.216 74 25 0 2 75 316 389 1.37e-31 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387090 AT1G70160.1 75.641 78 19 0 2 79 315 392 6.53e-39 134
Msa1387090 AT5G54870.2 70.423 71 21 0 5 75 219 289 1.11e-33 119
Msa1387090 AT5G54870.1 70.423 71 21 0 5 75 325 395 2.90e-33 119
Msa1387090 AT4G27020.1 70.423 71 21 0 5 75 317 387 8.37e-33 118

Find 25 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCGAGCATACTCCCATGC+TGG 0.417900 tig0020882:-15138 None:intergenic
GGAGCAGTGAATAAGCGGTT+AGG 0.437684 tig0020882:+15825 Msa1387090:CDS
CAGCTTATTGTGCAAATATG+TGG 0.457321 tig0020882:+15799 Msa1387090:CDS
CACATATTTGCACAATAAGC+TGG 0.472678 tig0020882:-15798 None:intergenic
ATCATGTTGTGATAACCATA+TGG 0.492902 tig0020882:-15174 None:intergenic
GAGTATGCTCGGAGCATGTC+AGG 0.502825 tig0020882:+15147 Msa1387090:CDS
GAGCAGTGAATAAGCGGTTA+GGG 0.516135 tig0020882:+15826 Msa1387090:CDS
GCCCAGCATGGGAGTATGCT+CGG 0.537569 tig0020882:+15136 Msa1387090:intron
AGCATGTCAGGAAAGCCATA+TGG 0.540601 tig0020882:+15159 Msa1387090:CDS
ATTAGGGCATGAGAATGAAA+AGG 0.544593 tig0020882:+14773 None:intergenic
ATCACAACATGATATTCAGT+TGG 0.549445 tig0020882:+15184 Msa1387090:CDS
TTTCCAGGTAGTTTCTGTCA+TGG 0.557523 tig0020882:+15755 Msa1387090:intron
TCCGAGCATACTCCCATGCT+GGG 0.570253 tig0020882:-15137 None:intergenic
ATGTGAGCATCAAGAGGTGG+AGG 0.571518 tig0020882:-15231 None:intergenic
AATTTAACTCAGCCCAGCAT+GGG 0.573049 tig0020882:+15125 Msa1387090:intron
AAATTTAACTCAGCCCAGCA+TGG 0.573380 tig0020882:+15124 Msa1387090:intron
TCCACCTCTTGATGCTCACA+TGG 0.577934 tig0020882:+15233 Msa1387090:CDS
AGCTTATTGTGCAAATATGT+GGG 0.611998 tig0020882:+15800 Msa1387090:CDS
TATTGTGCAAATATGTGGGA+TGG 0.640807 tig0020882:+15804 Msa1387090:CDS
TAGTTTCTGTCATGGCGATG+TGG 0.644414 tig0020882:+15763 Msa1387090:CDS
ACCATGTGAGCATCAAGAGG+TGG 0.659314 tig0020882:-15234 None:intergenic
ACTACCATGTGAGCATCAAG+AGG 0.665529 tig0020882:-15237 None:intergenic
GGGATGGAGCAGTGAATAAG+CGG 0.670604 tig0020882:+15820 Msa1387090:CDS
GAATAAGCGGTTAGGGACCG+AGG 0.673699 tig0020882:+15833 Msa1387090:CDS
TTGAAGGACATAATACAACA+TGG 0.676015 tig0020882:+16600 Msa1387090:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAAAACTGTTAAT+GGG - tig0020882:16240-16259 None:intergenic 10.0%
!! ATAAAAAAAAAACTGTTAAT+GGG - tig0020882:16240-16259 None:intergenic 10.0%
!!! TTAAATTTTTCACTCAATTT+TGG - tig0020882:15112-15131 None:intergenic 15.0%
!!! TTAAATAGATAGATTACTTT+TGG - tig0020882:15656-15675 None:intergenic 15.0%
!! CATAAAAAAAAAACTGTTAA+TGG - tig0020882:16241-16260 None:intergenic 15.0%
!!! CATTAACAGTTTTTTTTTTA+TGG + tig0020882:16239-16258 Msa1387090:intron 15.0%
!!! TTAAATTTTTCACTCAATTT+TGG - tig0020882:15112-15131 None:intergenic 15.0%
!!! TTAAATAGATAGATTACTTT+TGG - tig0020882:15656-15675 None:intergenic 15.0%
!! CATAAAAAAAAAACTGTTAA+TGG - tig0020882:16241-16260 None:intergenic 15.0%
!!! CATTAACAGTTTTTTTTTTA+TGG + tig0020882:16239-16258 Msa1387090:intron 15.0%
!! CATTACATCAATAATGAAAA+TGG - tig0020882:14829-14848 None:intergenic 20.0%
!!! AGTTTTATGTTTTATGAAAC+AGG + tig0020882:14927-14946 Msa1387090:intron 20.0%
!!! TATAAAACAAGATGGTTTTA+TGG + tig0020882:14976-14995 Msa1387090:intron 20.0%
!!! TAAGCAATTTTCTAAAACAA+AGG - tig0020882:15445-15464 None:intergenic 20.0%
!! CTAAATTTGGAAATAAAAGA+AGG + tig0020882:15918-15937 Msa1387090:intron 20.0%
!! ATAAAAGAAGGAAATCATTT+AGG + tig0020882:15930-15949 Msa1387090:intron 20.0%
!! TGCTATGTTAACAATATATT+AGG + tig0020882:16024-16043 Msa1387090:intron 20.0%
!!! TTTTTTATGGCAATGATTAA+AGG + tig0020882:16252-16271 Msa1387090:intron 20.0%
!!! TTTTTATGGCAATGATTAAA+GGG + tig0020882:16253-16272 Msa1387090:intron 20.0%
!!! TAAAGGGTTAAATATGTTTT+TGG + tig0020882:16269-16288 Msa1387090:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - tig0020882:16296-16315 None:intergenic 20.0%
!!! GCATGTTTTTTTTTTTTTGA+AGG + tig0020882:16584-16603 Msa1387090:intron 20.0%
!! CATTACATCAATAATGAAAA+TGG - tig0020882:14829-14848 None:intergenic 20.0%
!!! AGTTTTATGTTTTATGAAAC+AGG + tig0020882:14927-14946 Msa1387090:intron 20.0%
!!! TATAAAACAAGATGGTTTTA+TGG + tig0020882:14976-14995 Msa1387090:intron 20.0%
!!! TAAGCAATTTTCTAAAACAA+AGG - tig0020882:15445-15464 None:intergenic 20.0%
!! CTAAATTTGGAAATAAAAGA+AGG + tig0020882:15918-15937 Msa1387090:intron 20.0%
!! ATAAAAGAAGGAAATCATTT+AGG + tig0020882:15930-15949 Msa1387090:intron 20.0%
!! TGCTATGTTAACAATATATT+AGG + tig0020882:16024-16043 Msa1387090:intron 20.0%
!!! TTTTTTATGGCAATGATTAA+AGG + tig0020882:16252-16271 Msa1387090:intron 20.0%
!!! TTTTTATGGCAATGATTAAA+GGG + tig0020882:16253-16272 Msa1387090:intron 20.0%
!!! TAAAGGGTTAAATATGTTTT+TGG + tig0020882:16269-16288 Msa1387090:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - tig0020882:16296-16315 None:intergenic 20.0%
!!! GCATGTTTTTTTTTTTTTGA+AGG + tig0020882:16584-16603 Msa1387090:intron 20.0%
! CATAGTGTTATAAAACAAGA+TGG + tig0020882:14968-14987 Msa1387090:intron 25.0%
! AAATAATTGTGGTAATTCCA+TGG + tig0020882:15021-15040 Msa1387090:intron 25.0%
! AATAATTGTGGTAATTCCAT+GGG + tig0020882:15022-15041 Msa1387090:intron 25.0%
!!! ACTTTTCCATATTGGTTAAA+AGG + tig0020882:15262-15281 Msa1387090:intron 25.0%
! TTTGATCAAGTTATGCTTAT+TGG + tig0020882:15530-15549 Msa1387090:intron 25.0%
!! TTGCAAATTGAAATTTCTAG+TGG + tig0020882:15697-15716 Msa1387090:intron 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG - tig0020882:16297-16316 None:intergenic 25.0%
!! TAGCGATTGAAAATTTTACA+GGG - tig0020882:16355-16374 None:intergenic 25.0%
!!! AAATTTTCAATCGCTACTTT+TGG + tig0020882:16359-16378 Msa1387090:intron 25.0%
! ATGAGTCTAACCTTTAATAT+GGG - tig0020882:16386-16405 None:intergenic 25.0%
! AATGAGTCTAACCTTTAATA+TGG - tig0020882:16387-16406 None:intergenic 25.0%
! TGTATACTTGTAAAGTAATC+TGG - tig0020882:16468-16487 None:intergenic 25.0%
! TATCCTACTTGTAAGTATAT+GGG - tig0020882:16494-16513 None:intergenic 25.0%
! CATAGTGTTATAAAACAAGA+TGG + tig0020882:14968-14987 Msa1387090:intron 25.0%
! AAATAATTGTGGTAATTCCA+TGG + tig0020882:15021-15040 Msa1387090:intron 25.0%
! AATAATTGTGGTAATTCCAT+GGG + tig0020882:15022-15041 Msa1387090:intron 25.0%
!!! ACTTTTCCATATTGGTTAAA+AGG + tig0020882:15262-15281 Msa1387090:intron 25.0%
! TTTGATCAAGTTATGCTTAT+TGG + tig0020882:15530-15549 Msa1387090:intron 25.0%
!! TTGCAAATTGAAATTTCTAG+TGG + tig0020882:15697-15716 Msa1387090:intron 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG - tig0020882:16297-16316 None:intergenic 25.0%
!! TAGCGATTGAAAATTTTACA+GGG - tig0020882:16355-16374 None:intergenic 25.0%
!!! AAATTTTCAATCGCTACTTT+TGG + tig0020882:16359-16378 Msa1387090:intron 25.0%
! ATGAGTCTAACCTTTAATAT+GGG - tig0020882:16386-16405 None:intergenic 25.0%
! AATGAGTCTAACCTTTAATA+TGG - tig0020882:16387-16406 None:intergenic 25.0%
! TGTATACTTGTAAAGTAATC+TGG - tig0020882:16468-16487 None:intergenic 25.0%
! TATCCTACTTGTAAGTATAT+GGG - tig0020882:16494-16513 None:intergenic 25.0%
GGATAACATTCTTATTCAAC+AGG - tig0020882:14852-14871 None:intergenic 30.0%
ATCATGTTGTGATAACCATA+TGG - tig0020882:15177-15196 None:intergenic 30.0%
ATCACAACATGATATTCAGT+TGG + tig0020882:15184-15203 Msa1387090:CDS 30.0%
! GGTAGTAAACTTTTCCATAT+TGG + tig0020882:15254-15273 Msa1387090:intron 30.0%
CTTATGTTTGAATTAACTGC+TGG + tig0020882:15367-15386 Msa1387090:intron 30.0%
AAGGTAATTTGAATCTCTAC+TGG + tig0020882:15390-15409 Msa1387090:intron 30.0%
TCTCTACTGGAAAAAAATCT+AGG + tig0020882:15403-15422 Msa1387090:intron 30.0%
CTCTACTGGAAAAAAATCTA+GGG + tig0020882:15404-15423 Msa1387090:intron 30.0%
!!! TATTTTTTGTGAGACACAGA+AGG + tig0020882:15463-15482 Msa1387090:intron 30.0%
!!! ATTTTTTGTGAGACACAGAA+GGG + tig0020882:15464-15483 Msa1387090:intron 30.0%
TAAGATGACAATTGGTTAGA+AGG + tig0020882:15487-15506 Msa1387090:intron 30.0%
!! TTTGGAATCTGAGATTTTCA+GGG - tig0020882:15638-15657 None:intergenic 30.0%
!!! TTTTGGAATCTGAGATTTTC+AGG - tig0020882:15639-15658 None:intergenic 30.0%
AGCTTATTGTGCAAATATGT+GGG + tig0020882:15800-15819 Msa1387090:CDS 30.0%
!! GTTGTTTTGTGTGCTAAATT+TGG + tig0020882:15905-15924 Msa1387090:intron 30.0%
AAATCATTTAGGCAAAGAGA+TGG + tig0020882:15941-15960 Msa1387090:intron 30.0%
AATCATTTAGGCAAAGAGAT+GGG + tig0020882:15942-15961 Msa1387090:intron 30.0%
ATGTTATCAATAGCAGAATG+CGG + tig0020882:15978-15997 Msa1387090:intron 30.0%
! TTGTTAACATAGCAGAGTTT+TGG - tig0020882:16018-16037 None:intergenic 30.0%
! CTTAAAAAAAAGTGTGTGCA+TGG - tig0020882:16111-16130 None:intergenic 30.0%
AAGTCGAAGGAAAATTTAGA+GGG - tig0020882:16327-16346 None:intergenic 30.0%
AAAGTCGAAGGAAAATTTAG+AGG - tig0020882:16328-16347 None:intergenic 30.0%
! GTAGCGATTGAAAATTTTAC+AGG - tig0020882:16356-16375 None:intergenic 30.0%
! TACTTTTGGTCCCATATTAA+AGG + tig0020882:16373-16392 Msa1387090:intron 30.0%
TTAAAGGTTAGACTCATTGA+TGG + tig0020882:16389-16408 Msa1387090:intron 30.0%
! ATAGCATACACTTTGTTTAC+TGG - tig0020882:16438-16457 None:intergenic 30.0%
CTATCCTACTTGTAAGTATA+TGG - tig0020882:16495-16514 None:intergenic 30.0%
TTGAAGGACATAATACAACA+TGG + tig0020882:16600-16619 Msa1387090:intron 30.0%
GGATAACATTCTTATTCAAC+AGG - tig0020882:14852-14871 None:intergenic 30.0%
ATCATGTTGTGATAACCATA+TGG - tig0020882:15177-15196 None:intergenic 30.0%
ATCACAACATGATATTCAGT+TGG + tig0020882:15184-15203 Msa1387090:CDS 30.0%
! GGTAGTAAACTTTTCCATAT+TGG + tig0020882:15254-15273 Msa1387090:intron 30.0%
CTTATGTTTGAATTAACTGC+TGG + tig0020882:15367-15386 Msa1387090:intron 30.0%
AAGGTAATTTGAATCTCTAC+TGG + tig0020882:15390-15409 Msa1387090:intron 30.0%
TCTCTACTGGAAAAAAATCT+AGG + tig0020882:15403-15422 Msa1387090:intron 30.0%
CTCTACTGGAAAAAAATCTA+GGG + tig0020882:15404-15423 Msa1387090:intron 30.0%
!!! TATTTTTTGTGAGACACAGA+AGG + tig0020882:15463-15482 Msa1387090:intron 30.0%
!!! ATTTTTTGTGAGACACAGAA+GGG + tig0020882:15464-15483 Msa1387090:intron 30.0%
TAAGATGACAATTGGTTAGA+AGG + tig0020882:15487-15506 Msa1387090:intron 30.0%
!! TTTGGAATCTGAGATTTTCA+GGG - tig0020882:15638-15657 None:intergenic 30.0%
!!! TTTTGGAATCTGAGATTTTC+AGG - tig0020882:15639-15658 None:intergenic 30.0%
AGCTTATTGTGCAAATATGT+GGG + tig0020882:15800-15819 Msa1387090:CDS 30.0%
!! GTTGTTTTGTGTGCTAAATT+TGG + tig0020882:15905-15924 Msa1387090:intron 30.0%
AAATCATTTAGGCAAAGAGA+TGG + tig0020882:15941-15960 Msa1387090:intron 30.0%
AATCATTTAGGCAAAGAGAT+GGG + tig0020882:15942-15961 Msa1387090:intron 30.0%
ATGTTATCAATAGCAGAATG+CGG + tig0020882:15978-15997 Msa1387090:intron 30.0%
! TTGTTAACATAGCAGAGTTT+TGG - tig0020882:16018-16037 None:intergenic 30.0%
! CTTAAAAAAAAGTGTGTGCA+TGG - tig0020882:16111-16130 None:intergenic 30.0%
AAGTCGAAGGAAAATTTAGA+GGG - tig0020882:16327-16346 None:intergenic 30.0%
AAAGTCGAAGGAAAATTTAG+AGG - tig0020882:16328-16347 None:intergenic 30.0%
! GTAGCGATTGAAAATTTTAC+AGG - tig0020882:16356-16375 None:intergenic 30.0%
! TACTTTTGGTCCCATATTAA+AGG + tig0020882:16373-16392 Msa1387090:intron 30.0%
TTAAAGGTTAGACTCATTGA+TGG + tig0020882:16389-16408 Msa1387090:intron 30.0%
! ATAGCATACACTTTGTTTAC+TGG - tig0020882:16438-16457 None:intergenic 30.0%
CTATCCTACTTGTAAGTATA+TGG - tig0020882:16495-16514 None:intergenic 30.0%
TTGAAGGACATAATACAACA+TGG + tig0020882:16600-16619 Msa1387090:intron 30.0%
TAATTCCATGGGAAGAAAGA+TGG + tig0020882:15033-15052 Msa1387090:intron 35.0%
AATTCCATGGGAAGAAAGAT+GGG + tig0020882:15034-15053 Msa1387090:intron 35.0%
! TTCACTCAATTTTGGATGCA+GGG - tig0020882:15104-15123 None:intergenic 35.0%
! TTTCACTCAATTTTGGATGC+AGG - tig0020882:15105-15124 None:intergenic 35.0%
TGTTTGAATTAACTGCTGGA+AGG + tig0020882:15371-15390 Msa1387090:intron 35.0%
CACATATTTGCACAATAAGC+TGG - tig0020882:15801-15820 None:intergenic 35.0%
CAGCTTATTGTGCAAATATG+TGG + tig0020882:15799-15818 Msa1387090:CDS 35.0%
TATTGTGCAAATATGTGGGA+TGG + tig0020882:15804-15823 Msa1387090:CDS 35.0%
AAAAACCTCAGCACACTATA+AGG - tig0020882:15881-15900 None:intergenic 35.0%
GTTTACTGGAAGAGTTATGA+GGG - tig0020882:16424-16443 None:intergenic 35.0%
TGTTTACTGGAAGAGTTATG+AGG - tig0020882:16425-16444 None:intergenic 35.0%
AAGCCCATATACTTACAAGT+AGG + tig0020882:16488-16507 Msa1387090:intron 35.0%
TAATTCCATGGGAAGAAAGA+TGG + tig0020882:15033-15052 Msa1387090:intron 35.0%
AATTCCATGGGAAGAAAGAT+GGG + tig0020882:15034-15053 Msa1387090:intron 35.0%
! TTCACTCAATTTTGGATGCA+GGG - tig0020882:15104-15123 None:intergenic 35.0%
! TTTCACTCAATTTTGGATGC+AGG - tig0020882:15105-15124 None:intergenic 35.0%
TGTTTGAATTAACTGCTGGA+AGG + tig0020882:15371-15390 Msa1387090:intron 35.0%
CACATATTTGCACAATAAGC+TGG - tig0020882:15801-15820 None:intergenic 35.0%
CAGCTTATTGTGCAAATATG+TGG + tig0020882:15799-15818 Msa1387090:CDS 35.0%
TATTGTGCAAATATGTGGGA+TGG + tig0020882:15804-15823 Msa1387090:CDS 35.0%
AAAAACCTCAGCACACTATA+AGG - tig0020882:15881-15900 None:intergenic 35.0%
GTTTACTGGAAGAGTTATGA+GGG - tig0020882:16424-16443 None:intergenic 35.0%
TGTTTACTGGAAGAGTTATG+AGG - tig0020882:16425-16444 None:intergenic 35.0%
AAGCCCATATACTTACAAGT+AGG + tig0020882:16488-16507 Msa1387090:intron 35.0%
TTTATGGTCTGTCTTTCTGC+AGG + tig0020882:14992-15011 Msa1387090:intron 40.0%
TTATGGTCTGTCTTTCTGCA+GGG + tig0020882:14993-15012 Msa1387090:intron 40.0%
GCAGGGTGAAGAAATAATTG+TGG + tig0020882:15010-15029 Msa1387090:intron 40.0%
AATTCCCATCTTTCTTCCCA+TGG - tig0020882:15041-15060 None:intergenic 40.0%
ATGGGAAGAAAGATGGGAAT+TGG + tig0020882:15040-15059 Msa1387090:intron 40.0%
! TGGGAATTGGCTCTTAAAGA+TGG + tig0020882:15053-15072 Msa1387090:intron 40.0%
! TCACTCAATTTTGGATGCAG+GGG - tig0020882:15103-15122 None:intergenic 40.0%
AAATTTAACTCAGCCCAGCA+TGG + tig0020882:15124-15143 Msa1387090:intron 40.0%
AATTTAACTCAGCCCAGCAT+GGG + tig0020882:15125-15144 Msa1387090:intron 40.0%
! GCGATGCCTTTTAACCAATA+TGG - tig0020882:15271-15290 None:intergenic 40.0%
TATGCTGTTCACATAATCGC+AGG - tig0020882:15309-15328 None:intergenic 40.0%
CAGAAGGGTAAGATGACAAT+TGG + tig0020882:15479-15498 Msa1387090:intron 40.0%
AGTATTGCACAAAGTCATGC+AGG - tig0020882:15568-15587 None:intergenic 40.0%
TAGCTGCTTCATACAATGCT+AGG - tig0020882:15594-15613 None:intergenic 40.0%
!! TTTTCAGGGAAGAGAGGAAA+GGG - tig0020882:15624-15643 None:intergenic 40.0%
!! ATTTTCAGGGAAGAGAGGAA+AGG - tig0020882:15625-15644 None:intergenic 40.0%
!! TGAAATTTCTAGTGGTGCTG+TGG + tig0020882:15705-15724 Msa1387090:intron 40.0%
TTTCCAGGTAGTTTCTGTCA+TGG + tig0020882:15755-15774 Msa1387090:intron 40.0%
TTGTACCTTATAGTGTGCTG+AGG + tig0020882:15873-15892 Msa1387090:intron 40.0%
GAGGGACTAAAACGAAAAGT+TGG - tig0020882:16309-16328 None:intergenic 40.0%
TTTATGGTCTGTCTTTCTGC+AGG + tig0020882:14992-15011 Msa1387090:intron 40.0%
TTATGGTCTGTCTTTCTGCA+GGG + tig0020882:14993-15012 Msa1387090:intron 40.0%
GCAGGGTGAAGAAATAATTG+TGG + tig0020882:15010-15029 Msa1387090:intron 40.0%
AATTCCCATCTTTCTTCCCA+TGG - tig0020882:15041-15060 None:intergenic 40.0%
ATGGGAAGAAAGATGGGAAT+TGG + tig0020882:15040-15059 Msa1387090:intron 40.0%
! TGGGAATTGGCTCTTAAAGA+TGG + tig0020882:15053-15072 Msa1387090:intron 40.0%
! TCACTCAATTTTGGATGCAG+GGG - tig0020882:15103-15122 None:intergenic 40.0%
AAATTTAACTCAGCCCAGCA+TGG + tig0020882:15124-15143 Msa1387090:intron 40.0%
AATTTAACTCAGCCCAGCAT+GGG + tig0020882:15125-15144 Msa1387090:intron 40.0%
! GCGATGCCTTTTAACCAATA+TGG - tig0020882:15271-15290 None:intergenic 40.0%
TATGCTGTTCACATAATCGC+AGG - tig0020882:15309-15328 None:intergenic 40.0%
CAGAAGGGTAAGATGACAAT+TGG + tig0020882:15479-15498 Msa1387090:intron 40.0%
AGTATTGCACAAAGTCATGC+AGG - tig0020882:15568-15587 None:intergenic 40.0%
TAGCTGCTTCATACAATGCT+AGG - tig0020882:15594-15613 None:intergenic 40.0%
!! TTTTCAGGGAAGAGAGGAAA+GGG - tig0020882:15624-15643 None:intergenic 40.0%
!! ATTTTCAGGGAAGAGAGGAA+AGG - tig0020882:15625-15644 None:intergenic 40.0%
!! TGAAATTTCTAGTGGTGCTG+TGG + tig0020882:15705-15724 Msa1387090:intron 40.0%
TTTCCAGGTAGTTTCTGTCA+TGG + tig0020882:15755-15774 Msa1387090:intron 40.0%
TTGTACCTTATAGTGTGCTG+AGG + tig0020882:15873-15892 Msa1387090:intron 40.0%
GAGGGACTAAAACGAAAAGT+TGG - tig0020882:16309-16328 None:intergenic 40.0%
GAATGTTATCCGTGCCTAGT+AGG + tig0020882:14861-14880 Msa1387090:intron 45.0%
GAAGCAGGTGATCTATGGAT+TGG - tig0020882:15081-15100 None:intergenic 45.0%
AGCATGTCAGGAAAGCCATA+TGG + tig0020882:15159-15178 Msa1387090:CDS 45.0%
ACTACCATGTGAGCATCAAG+AGG - tig0020882:15240-15259 None:intergenic 45.0%
!! CTGAGATTTTCAGGGAAGAG+AGG - tig0020882:15630-15649 None:intergenic 45.0%
!! CTGTGGATGTTTGGTTCTGA+AGG + tig0020882:15722-15741 Msa1387090:intron 45.0%
GAAGGACATGTTCTCTTTCC+AGG + tig0020882:15740-15759 Msa1387090:intron 45.0%
TAGTTTCTGTCATGGCGATG+TGG + tig0020882:15763-15782 Msa1387090:CDS 45.0%
GAGCAGTGAATAAGCGGTTA+GGG + tig0020882:15826-15845 Msa1387090:CDS 45.0%
CATTTAGGCAAAGAGATGGG+AGG + tig0020882:15945-15964 Msa1387090:intron 45.0%
TTACAGGGACTGAAAGTCGA+AGG - tig0020882:16340-16359 None:intergenic 45.0%
GAATGTTATCCGTGCCTAGT+AGG + tig0020882:14861-14880 Msa1387090:intron 45.0%
GAAGCAGGTGATCTATGGAT+TGG - tig0020882:15081-15100 None:intergenic 45.0%
AGCATGTCAGGAAAGCCATA+TGG + tig0020882:15159-15178 Msa1387090:CDS 45.0%
ACTACCATGTGAGCATCAAG+AGG - tig0020882:15240-15259 None:intergenic 45.0%
!! CTGAGATTTTCAGGGAAGAG+AGG - tig0020882:15630-15649 None:intergenic 45.0%
!! CTGTGGATGTTTGGTTCTGA+AGG + tig0020882:15722-15741 Msa1387090:intron 45.0%
GAAGGACATGTTCTCTTTCC+AGG + tig0020882:15740-15759 Msa1387090:intron 45.0%
TAGTTTCTGTCATGGCGATG+TGG + tig0020882:15763-15782 Msa1387090:CDS 45.0%
GAGCAGTGAATAAGCGGTTA+GGG + tig0020882:15826-15845 Msa1387090:CDS 45.0%
CATTTAGGCAAAGAGATGGG+AGG + tig0020882:15945-15964 Msa1387090:intron 45.0%
TTACAGGGACTGAAAGTCGA+AGG - tig0020882:16340-16359 None:intergenic 45.0%
! ATTTTGGATGCAGGGGAAGC+AGG - tig0020882:15096-15115 None:intergenic 50.0%
ATGTGAGCATCAAGAGGTGG+AGG - tig0020882:15234-15253 None:intergenic 50.0%
TCCACCTCTTGATGCTCACA+TGG + tig0020882:15233-15252 Msa1387090:CDS 50.0%
ACCATGTGAGCATCAAGAGG+TGG - tig0020882:15237-15256 None:intergenic 50.0%
!! CTAGTGGTGCTGTGGATGTT+TGG + tig0020882:15713-15732 Msa1387090:intron 50.0%
TCGCCATGACAGAAACTACC+TGG - tig0020882:15761-15780 None:intergenic 50.0%
GGGATGGAGCAGTGAATAAG+CGG + tig0020882:15820-15839 Msa1387090:CDS 50.0%
GGAGCAGTGAATAAGCGGTT+AGG + tig0020882:15825-15844 Msa1387090:CDS 50.0%
TTAGGGACCGAGGTAAGTCT+TGG + tig0020882:15843-15862 Msa1387090:intron 50.0%
ACCAGTGCCAAGACTTACCT+CGG - tig0020882:15853-15872 None:intergenic 50.0%
! ATTTTGGATGCAGGGGAAGC+AGG - tig0020882:15096-15115 None:intergenic 50.0%
ATGTGAGCATCAAGAGGTGG+AGG - tig0020882:15234-15253 None:intergenic 50.0%
TCCACCTCTTGATGCTCACA+TGG + tig0020882:15233-15252 Msa1387090:CDS 50.0%
ACCATGTGAGCATCAAGAGG+TGG - tig0020882:15237-15256 None:intergenic 50.0%
!! CTAGTGGTGCTGTGGATGTT+TGG + tig0020882:15713-15732 Msa1387090:intron 50.0%
TCGCCATGACAGAAACTACC+TGG - tig0020882:15761-15780 None:intergenic 50.0%
GGGATGGAGCAGTGAATAAG+CGG + tig0020882:15820-15839 Msa1387090:CDS 50.0%
GGAGCAGTGAATAAGCGGTT+AGG + tig0020882:15825-15844 Msa1387090:CDS 50.0%
TTAGGGACCGAGGTAAGTCT+TGG + tig0020882:15843-15862 Msa1387090:intron 50.0%
ACCAGTGCCAAGACTTACCT+CGG - tig0020882:15853-15872 None:intergenic 50.0%
ATCCGTGCCTAGTAGGTGCT+TGG + tig0020882:14868-14887 Msa1387090:intron 55.0%
CTCCAAGCACCTACTAGGCA+CGG - tig0020882:14873-14892 None:intergenic 55.0%
TGCCTAGTAGGTGCTTGGAG+TGG + tig0020882:14873-14892 Msa1387090:intron 55.0%
CACCACTCCAAGCACCTACT+AGG - tig0020882:14878-14897 None:intergenic 55.0%
CTAGTAGGTGCTTGGAGTGG+TGG + tig0020882:14876-14895 Msa1387090:intron 55.0%
CAGGGGAAGCAGGTGATCTA+TGG - tig0020882:15086-15105 None:intergenic 55.0%
TCCGAGCATACTCCCATGCT+GGG - tig0020882:15140-15159 None:intergenic 55.0%
GAGTATGCTCGGAGCATGTC+AGG + tig0020882:15147-15166 Msa1387090:CDS 55.0%
GAATAAGCGGTTAGGGACCG+AGG + tig0020882:15833-15852 Msa1387090:CDS 55.0%
ACCGAGGTAAGTCTTGGCAC+TGG + tig0020882:15849-15868 Msa1387090:intron 55.0%
ATCCGTGCCTAGTAGGTGCT+TGG + tig0020882:14868-14887 Msa1387090:intron 55.0%
CTCCAAGCACCTACTAGGCA+CGG - tig0020882:14873-14892 None:intergenic 55.0%
TGCCTAGTAGGTGCTTGGAG+TGG + tig0020882:14873-14892 Msa1387090:intron 55.0%
CACCACTCCAAGCACCTACT+AGG - tig0020882:14878-14897 None:intergenic 55.0%
CTAGTAGGTGCTTGGAGTGG+TGG + tig0020882:14876-14895 Msa1387090:intron 55.0%
CAGGGGAAGCAGGTGATCTA+TGG - tig0020882:15086-15105 None:intergenic 55.0%
TCCGAGCATACTCCCATGCT+GGG - tig0020882:15140-15159 None:intergenic 55.0%
GAGTATGCTCGGAGCATGTC+AGG + tig0020882:15147-15166 Msa1387090:CDS 55.0%
GAATAAGCGGTTAGGGACCG+AGG + tig0020882:15833-15852 Msa1387090:CDS 55.0%
ACCGAGGTAAGTCTTGGCAC+TGG + tig0020882:15849-15868 Msa1387090:intron 55.0%
! GCCCAGCATGGGAGTATGCT+CGG + tig0020882:15136-15155 Msa1387090:intron 60.0%
CTCCGAGCATACTCCCATGC+TGG - tig0020882:15141-15160 None:intergenic 60.0%
! GCCCAGCATGGGAGTATGCT+CGG + tig0020882:15136-15155 Msa1387090:intron 60.0%
CTCCGAGCATACTCCCATGC+TGG - tig0020882:15141-15160 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0020882 gene 14787 16632 14787 ID=Msa1387090;Name=Msa1387090
tig0020882 mRNA 14787 16632 14787 ID=Msa1387090-mRNA-1;Parent=Msa1387090;Name=Msa1387090-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|0.75|1|1|4|0|81
tig0020882 exon 14787 14794 14787 ID=Msa1387090-mRNA-1:exon:10479;Parent=Msa1387090-mRNA-1
tig0020882 exon 15137 15254 15137 ID=Msa1387090-mRNA-1:exon:10480;Parent=Msa1387090-mRNA-1
tig0020882 exon 15762 15854 15762 ID=Msa1387090-mRNA-1:exon:10481;Parent=Msa1387090-mRNA-1
tig0020882 exon 16606 16632 16606 ID=Msa1387090-mRNA-1:exon:10482;Parent=Msa1387090-mRNA-1
tig0020882 CDS 14787 14794 14787 ID=Msa1387090-mRNA-1:cds;Parent=Msa1387090-mRNA-1
tig0020882 CDS 15137 15254 15137 ID=Msa1387090-mRNA-1:cds;Parent=Msa1387090-mRNA-1
tig0020882 CDS 15762 15854 15762 ID=Msa1387090-mRNA-1:cds;Parent=Msa1387090-mRNA-1
tig0020882 CDS 16606 16632 16606 ID=Msa1387090-mRNA-1:cds;Parent=Msa1387090-mRNA-1
Gene Sequence

>Msa1387090

ATGAAAAGCCCAGCATGGGAGTATGCTCGGAGCATGTCAGGAAAGCCATATGGTTATCACAACATGATATTCAGTTGGACTGACACTGTAGCTGACAACTATCCTCCACCTCTTGATGCTCACATGGTAGTTTCTGTCATGGCGATGTGGACTAGATTGCAGCCAGCTTATTGTGCAAATATGTGGGATGGAGCAGTGAATAAGCGGTTAGGGACCGAGGACATAATACAACATGGTGCTGATTGA

Protein sequence

>Msa1387090

MKSPAWEYARSMSGKPYGYHNMIFSWTDTVADNYPPPLDAHMVVSVMAMWTRLQPAYCANMWDGAVNKRLGTEDIIQHGAD*