AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1161160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1161160 MtrunA17_Chr7g0255551 91.635 526 22 1 1 504 1 526 0.0 980
Msa1161160 MtrunA17_Chr8g0377771 50.969 516 227 5 15 504 32 547 3.31e-178 512
Msa1161160 MtrunA17_Chr7g0234801 51.076 511 224 5 15 499 28 538 6.03e-174 501
Msa1161160 MtrunA17_Chr8g0339141 50.800 500 218 4 33 504 52 551 1.26e-166 483
Msa1161160 MtrunA17_Chr8g0339141 30.573 157 100 2 21 172 156 308 3.36e-16 81.3
Msa1161160 MtrunA17_Chr1g0152361 38.544 371 198 6 160 501 4 373 1.85e-79 253
Msa1161160 MtrunA17_Chr1g0152361 30.075 133 86 2 44 171 4 134 9.97e-13 69.7
Msa1161160 MtrunA17_Chr1g0152361 33.621 116 73 2 13 124 92 207 1.11e-11 66.6
Msa1161160 MtrunA17_Chr8g0352971 45.210 334 150 8 36 339 14 344 4.35e-79 253
Msa1161160 MtrunA17_Chr8g0352971 30.899 178 112 4 21 192 120 292 7.14e-19 89.0
Msa1161160 MtrunA17_Chr4g0027201 31.384 513 304 10 15 487 29 533 2.50e-56 198
Msa1161160 MtrunA17_Chr8g0338001 38.150 346 164 10 119 425 43 377 3.96e-54 187
Msa1161160 MtrunA17_Chr8g0338001 30.380 158 99 4 21 172 61 213 2.39e-12 68.9
Msa1161160 MtrunA17_Chr8g0338001 30.769 117 74 3 24 133 181 297 9.11e-11 63.9
Msa1161160 MtrunA17_Chr8g0338181 44.805 154 78 2 237 383 2 155 1.17e-29 114
Msa1161160 MtrunA17_Chr8g0336421 48.148 135 64 2 211 339 41 175 1.05e-26 112
Msa1161160 MtrunA17_Chr1g0152351 39.726 146 83 2 19 164 61 201 1.07e-25 104
Msa1161160 MtrunA17_Chr1g0152351 33.088 136 75 5 130 249 56 191 7.34e-12 64.7
Msa1161160 MtrunA17_Chr8g0338631 43.846 130 69 2 297 423 1 129 1.03e-24 99.8
Msa1161160 MtrunA17_Chr8g0339171 50.000 86 43 0 39 124 50 135 2.11e-24 99.0
Msa1161160 MtrunA17_Chr4g0019501 31.095 283 167 8 232 496 55 327 4.35e-20 92.0
Msa1161160 MtrunA17_Chr5g0435521 39.640 111 64 2 18 125 9 119 7.51e-20 87.4
Msa1161160 MtrunA17_Chr2g0279511 44.954 109 54 4 21 124 2 109 3.42e-17 77.4
Msa1161160 MtrunA17_Chr4g0052911 38.144 97 49 2 39 124 141 237 1.11e-16 79.7
Msa1161160 MtrunA17_Chr8g0374621 33.987 153 97 3 352 501 209 360 1.44e-13 72.0
Msa1161160 MtrunA17_Chr8g0338061 42.391 92 50 1 295 383 1 92 6.44e-13 64.7
Msa1161160 MtrunA17_Chr8g0338661 42.391 92 50 1 295 383 1 92 9.75e-13 64.3
Msa1161160 MtrunA17_Chr5g0396231 39.773 88 48 2 39 124 413 497 5.09e-12 68.2
Msa1161160 MtrunA17_Chr4g0014351 36.782 87 53 2 39 124 781 866 5.57e-12 68.6
Msa1161160 MtrunA17_Chr7g0237741 35.484 124 70 3 349 471 89 203 1.66e-11 64.7
Msa1161160 MtrunA17_Chr4g0033841 36.559 93 55 2 35 123 126 218 1.86e-11 63.9
Msa1161160 MtrunA17_Chr2g0323971 34.146 123 73 1 349 471 92 206 2.48e-11 64.3
Msa1161160 MtrunA17_Chr4g0045321 27.168 173 116 3 330 499 194 359 2.60e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1161160 AT5G48570.1 51.838 517 220 6 16 503 42 558 0.0 520
Msa1161160 AT3G25230.1 49.023 512 234 4 20 504 38 549 1.60e-169 490
Msa1161160 AT3G25230.2 49.119 511 233 4 20 503 38 548 4.98e-169 489
Msa1161160 AT3G54010.1 30.512 508 315 11 15 487 27 531 5.09e-52 187
Msa1161160 AT3G54010.2 30.631 444 274 10 75 487 1 441 9.22e-46 168
Msa1161160 AT1G58450.1 44.872 156 85 1 346 501 1 155 7.39e-37 134
Msa1161160 AT5G48580.1 50.575 87 43 0 39 125 52 138 2.95e-25 102
Msa1161160 AT3G25220.1 45.977 87 47 0 39 125 52 138 2.53e-22 93.6
Msa1161160 AT3G21640.1 29.710 276 184 8 230 496 48 322 7.42e-21 94.7
Msa1161160 AT5G45680.1 41.237 97 46 2 39 124 109 205 5.51e-18 83.2
Msa1161160 AT3G55520.2 40.541 111 63 2 18 125 9 119 7.85e-18 82.0
Msa1161160 AT3G55520.3 40.541 111 63 2 18 125 9 119 7.85e-18 82.0
Msa1161160 AT3G55520.1 40.541 111 63 2 18 125 9 119 7.85e-18 82.0
Msa1161160 AT5G64350.1 42.202 109 57 4 21 124 2 109 3.07e-15 72.4
Msa1161160 AT4G25340.1 44.828 87 46 2 39 124 389 474 1.70e-14 76.3
Msa1161160 AT2G43560.2 36.559 93 55 2 35 123 64 156 5.04e-12 64.7
Msa1161160 AT5G05420.1 39.080 87 50 3 39 124 56 140 1.69e-11 62.4
Msa1161160 AT2G15790.1 29.878 164 102 4 334 484 181 344 2.57e-11 65.9
Msa1161160 AT2G43560.1 36.559 93 55 2 35 123 120 212 3.04e-11 63.5

Find 95 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAGAGCCTTCACATTTA+AGG 0.117188 7_4:-51376692 None:intergenic
TGCTGCTTGTAAACTTAAAT+TGG 0.151479 7_4:+51376381 Msa1161160:CDS
AATTCATTGTACCTGTTATT+AGG 0.195670 7_4:-51376793 None:intergenic
CATTGAGCTTGATGATTTAC+TGG 0.219635 7_4:+51375167 Msa1161160:CDS
TATTCAAGGCTCAAAGTTTC+AGG 0.221390 7_4:+51376145 Msa1161160:CDS
TCCTTAGCATATGGGGAAAA+AGG 0.224851 7_4:+51374175 Msa1161160:CDS
TTTAGAGGACAAGTTGAAAA+TGG 0.239425 7_4:+51373832 Msa1161160:CDS
ATAAACAGGAGAAGCCATTT+TGG 0.242429 7_4:+51376061 Msa1161160:intron
CATAGAATCAACCTCAAAAT+TGG 0.243569 7_4:+51377311 Msa1161160:three_prime_UTR
AGCACTTCATCAAGCTCTTT+TGG 0.244910 7_4:-51374334 None:intergenic
CATTTAAGGGATCTTGTTCT+AGG 0.256787 7_4:-51376678 None:intergenic
AAGAAAGGATAAGCCGTTAT+TGG 0.257717 7_4:-51373514 None:intergenic
TCCTCCTTTCATTTCAAATT+AGG 0.262521 7_4:+51373886 Msa1161160:CDS
AGCAGCATTGTTCAAATTAC+AGG 0.279640 7_4:-51376365 None:intergenic
TATGAAGCAAGGCTTGAAAA+TGG 0.287212 7_4:+51374522 Msa1161160:CDS
GGAGGACCCTTTATCATAAC+TGG 0.291396 7_4:-51373869 None:intergenic
TCAACTTGGTCACCAGAAAA+TGG 0.313030 7_4:-51373695 None:intergenic
CTAGAATCCAGTTATGATAA+AGG 0.313343 7_4:+51373862 Msa1161160:CDS
GAATTTGTACTCAAGCAAAT+TGG 0.323192 7_4:+51373620 Msa1161160:CDS
TGTTTCCTTGCAAATTACTA+TGG 0.324988 7_4:-51375882 None:intergenic
GTTTCTGCATCAGTAACATT+TGG 0.334837 7_4:-51377289 None:intergenic
TAAAGAGCCTTCACATTTAA+GGG 0.343061 7_4:-51376691 None:intergenic
TGATTATTGATCCTAATAAC+AGG 0.368581 7_4:+51376782 Msa1161160:CDS
ATACCACCTTCCTTAGCATA+TGG 0.402959 7_4:+51374166 Msa1161160:CDS
ATGCTTATCAAATCTGATAA+AGG 0.408014 7_4:+51374546 Msa1161160:CDS
TCTTGAGTTGTGAACTCAAA+AGG 0.411624 7_4:-51375659 None:intergenic
GAGGTTCAAGTTTCTAAGAA+AGG 0.418599 7_4:-51373529 None:intergenic
TATTTCTACATCAAAATGAT+TGG 0.430402 7_4:-51377217 None:intergenic
TAGAATCCAGTTATGATAAA+GGG 0.435416 7_4:+51373863 Msa1161160:CDS
CTCAAGCAAATTGGAAATGA+AGG 0.438893 7_4:+51373629 Msa1161160:CDS
TCTTTAGCACAATGGTTTCA+AGG 0.453183 7_4:+51377182 Msa1161160:CDS
TGATGGAAATCTGCTATTCA+AGG 0.462612 7_4:+51376131 Msa1161160:CDS
GTAATCAAAGGTTGGGATGA+AGG 0.465069 7_4:+51374103 Msa1161160:CDS
AATTAACATCAAACTTGAGC+TGG 0.466397 7_4:+51375200 Msa1161160:CDS
AGAGCTCAAAATGAAGCAAA+AGG 0.469122 7_4:+51377135 Msa1161160:CDS
ATGAAGCAAGGCTTGAAAAT+GGG 0.472246 7_4:+51374523 Msa1161160:CDS
TCAAACTTGAGCTGGTATCA+TGG 0.473440 7_4:+51375208 Msa1161160:CDS
CTAATTCAACTTCATAGTAA+AGG 0.475433 7_4:-51375921 None:intergenic
TACCACCTTCCTTAGCATAT+GGG 0.479812 7_4:+51374167 Msa1161160:CDS
ACAGTCATATATTTATGTAA+AGG 0.483204 7_4:+51375593 Msa1161160:intron
CGCATCCAAGAAATATGAAA+AGG 0.500184 7_4:+51376170 Msa1161160:CDS
TTGGCCTAATTTGAAATGAA+AGG 0.504691 7_4:-51373890 None:intergenic
GGAGTTGCTACTATGAAGAA+AGG 0.505200 7_4:+51374124 Msa1161160:CDS
TGAATTAGTTGATTTCACTA+AGG 0.505362 7_4:+51375936 Msa1161160:CDS
ACTAAACAGATTCTTAGAAA+AGG 0.511190 7_4:+51373656 Msa1161160:CDS
AATAAGAGAAGGAGAAGGAT+GGG 0.511511 7_4:+51374306 Msa1161160:CDS
AGGTGAAGTAATCAAAGGTT+GGG 0.511565 7_4:+51374096 Msa1161160:intron
AAAATTAATAAAGCCGGTGA+AGG 0.513957 7_4:+51375273 Msa1161160:CDS
GAGTTGCTACTATGAAGAAA+GGG 0.516922 7_4:+51374125 Msa1161160:CDS
CAGTAAATCATCAAGCTCAA+TGG 0.519142 7_4:-51375166 None:intergenic
TTTCATTTCAAATTAGGCCA+AGG 0.520262 7_4:+51373892 Msa1161160:CDS
TTCACATGTGATCCTTCGTT+AGG 0.525931 7_4:-51375306 None:intergenic
CAGGTGAAGTAATCAAAGGT+TGG 0.528283 7_4:+51374095 Msa1161160:intron
TTTGAGTTCACAACTCAAGA+AGG 0.528628 7_4:+51375662 Msa1161160:CDS
TATTTATGTAAAGGAGAAGA+TGG 0.534404 7_4:+51375602 Msa1161160:CDS
TTCTTAGAAAAGGTGTCACT+TGG 0.537175 7_4:+51373666 Msa1161160:CDS
TCATAACTGGATTCTAGAGA+TGG 0.538143 7_4:-51373856 None:intergenic
AGGACGATCAAACCCTTCAC+CGG 0.540522 7_4:-51375286 None:intergenic
TAACAGTGAAATATGAAGCA+AGG 0.549042 7_4:+51374511 Msa1161160:intron
TTGAGATTGAAATGTTGTGT+TGG 0.551476 7_4:+51374236 Msa1161160:CDS
ATCAGAGACTTGACTGGTGA+TGG 0.554130 7_4:+51374265 Msa1161160:CDS
TCCCCATATGCTAAGGAAGG+TGG 0.559182 7_4:-51374169 None:intergenic
AAAAGGAGGGAAACCAATAA+CGG 0.563551 7_4:+51373501 None:intergenic
TGTGACCATAGTAATTTGCA+AGG 0.563666 7_4:+51375877 Msa1161160:CDS
TAGTAATTTGCAAGGAAACA+AGG 0.566312 7_4:+51375885 Msa1161160:CDS
AAAGAGCTTGATGAAGTGCT+AGG 0.570967 7_4:+51374337 Msa1161160:CDS
AAGACAATAAGAGAAGGAGA+AGG 0.572354 7_4:+51374301 Msa1161160:CDS
ACCACCTTCCTTAGCATATG+GGG 0.572462 7_4:+51374168 Msa1161160:CDS
CAATAAGAGAAGGAGAAGGA+TGG 0.574904 7_4:+51374305 Msa1161160:CDS
TATTGAGAGGAAAGGATCAA+AGG 0.577291 7_4:+51375631 Msa1161160:CDS
GTTGCAGGTGAAGTAATCAA+AGG 0.579564 7_4:+51374091 Msa1161160:intron
ACAAGATCCCTTAAATGTGA+AGG 0.580434 7_4:+51376684 Msa1161160:CDS
AAAATGAGGGTTGCATTAGG+AGG 0.583306 7_4:-51374214 None:intergenic
AAGAGTACACTGAAGCTGCT+AGG 0.591567 7_4:+51376404 Msa1161160:CDS
TAACGAAGGATCACATGTGA+AGG 0.593129 7_4:+51375308 Msa1161160:CDS
AAAATTGTTACTGATATCAC+AGG 0.593289 7_4:+51375231 Msa1161160:CDS
AAATTAATAAAGCCGGTGAA+GGG 0.595153 7_4:+51375274 Msa1161160:CDS
ATCTGACATCTTTAGCACAA+TGG 0.595223 7_4:+51377174 Msa1161160:CDS
GCCTAATTTGAAATGAAAGG+AGG 0.601174 7_4:-51373887 None:intergenic
GGTACAATTATTGAGAGGAA+AGG 0.602706 7_4:+51375623 Msa1161160:CDS
AGAGACTTGACTGGTGATGG+AGG 0.606419 7_4:+51374268 Msa1161160:CDS
TTCTTCTTTATTCAAGTACG+AGG 0.611033 7_4:-51377336 None:intergenic
ATACCTTAAAACATCAGACT+TGG 0.621052 7_4:+51376729 Msa1161160:CDS
TATCAAATCTGATAAAGGTG+TGG 0.628019 7_4:+51374551 Msa1161160:CDS
TTTGATCACACATTCAGTGA+CGG 0.629377 7_4:+51376310 Msa1161160:CDS
AAGATGGTACAATTATTGAG+AGG 0.636399 7_4:+51375618 Msa1161160:CDS
AACGAAGGATCACATGTGAA+GGG 0.640374 7_4:+51375309 Msa1161160:CDS
GTGGAGTTTAATGTAAGTGA+TGG 0.656067 7_4:+51374570 Msa1161160:CDS
AGTAGCATCAGAGACTTGAC+TGG 0.659161 7_4:+51374259 Msa1161160:CDS
AGCTGCTAGGCTATGCACAA+AGG 0.661120 7_4:+51376417 Msa1161160:CDS
AGTTGCTACTATGAAGAAAG+GGG 0.665518 7_4:+51374126 Msa1161160:CDS
CAAATTACAGGATAATCTCG+AGG 0.666237 7_4:-51376353 None:intergenic
GGGTTTGATCGTCCTAACGA+AGG 0.667918 7_4:+51375294 Msa1161160:CDS
GTTGCATTAGGAGGAATCAA+CGG 0.669552 7_4:-51374205 None:intergenic
GCATTAGGAGGAATCAACGG+CGG 0.744191 7_4:-51374202 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CACTTTTTAAAATTATTTAT+TGG - chr7_4:51376961-51376980 None:intergenic 10.0%
!!! CAATAAATAATTTTAAAAAG+TGG + chr7_4:51376959-51376978 Msa1161160:intron 10.0%
!!! AAATATCTTTTTACACTAAT+AGG - chr7_4:51374390-51374409 None:intergenic 15.0%
!! TTAATAATATGACTAATATC+AGG + chr7_4:51375099-51375118 Msa1161160:intron 15.0%
!!! TGATTTATTTTTACTTTTGT+TGG - chr7_4:51375534-51375553 None:intergenic 15.0%
!!! AATGAAATTCTTTATTGATT+TGG + chr7_4:51376261-51376280 Msa1161160:intron 15.0%
!! ATAAATTAACTTTGCAATAT+TGG + chr7_4:51376613-51376632 Msa1161160:intron 15.0%
!!! ATCCATTCAATTTAATTTTT+GGG + chr7_4:51377260-51377279 Msa1161160:three_prime_UTR 15.0%
!! AAAGAGATAAAAAGAGAAAA+AGG - chr7_4:51373557-51373576 None:intergenic 20.0%
!! GAAATGAATATGAAATTCTT+TGG + chr7_4:51374027-51374046 Msa1161160:intron 20.0%
!! TTTGATGTTACTGTTAAATT+AGG + chr7_4:51374051-51374070 Msa1161160:intron 20.0%
!! GTTAAATTAGTAGTATATGT+AGG - chr7_4:51374495-51374514 None:intergenic 20.0%
!!! ATTTTTATTTTTGCTGCATA+AGG + chr7_4:51375059-51375078 Msa1161160:intron 20.0%
!! CTGAAAAAAATTAATAAAGC+CGG + chr7_4:51375267-51375286 Msa1161160:CDS 20.0%
!! ACAGTCATATATTTATGTAA+AGG + chr7_4:51375593-51375612 Msa1161160:intron 20.0%
!! ATTAATGTTATACAAGAACA+AGG + chr7_4:51375691-51375710 Msa1161160:intron 20.0%
!! TTAATGTTATACAAGAACAA+GGG + chr7_4:51375692-51375711 Msa1161160:intron 20.0%
!! CATATGATTGTGAATAAATA+GGG - chr7_4:51376834-51376853 None:intergenic 20.0%
!! TTGAACCTAATTATATATGT+CGG + chr7_4:51376988-51377007 Msa1161160:intron 20.0%
!! TGAATAATTATTTGTTCACT+TGG + chr7_4:51377080-51377099 Msa1161160:intron 20.0%
!!! TATTTCTACATCAAAATGAT+TGG - chr7_4:51377220-51377239 None:intergenic 20.0%
!!! CATCCATTCAATTTAATTTT+TGG + chr7_4:51377259-51377278 Msa1161160:three_prime_UTR 20.0%
!! TACCCAAAAATTAAATTGAA+TGG - chr7_4:51377265-51377284 None:intergenic 20.0%
! ATAAAAAGAGAAAAAGGAAG+AGG - chr7_4:51373551-51373570 None:intergenic 25.0%
! ACTAAACAGATTCTTAGAAA+AGG + chr7_4:51373656-51373675 Msa1161160:CDS 25.0%
! GATATAGTTAGAGAATGATA+TGG - chr7_4:51373731-51373750 None:intergenic 25.0%
! ACAGACATAAATAAAACAAG+TGG - chr7_4:51373753-51373772 None:intergenic 25.0%
! TAGAATCCAGTTATGATAAA+GGG + chr7_4:51373863-51373882 Msa1161160:CDS 25.0%
!! TTTCTGTCTATAATTTTCGT+CGG - chr7_4:51373961-51373980 None:intergenic 25.0%
! TTAGGCTAAGTTATTGAATT+TGG + chr7_4:51374069-51374088 Msa1161160:intron 25.0%
! CATTTCAATCTCAAAAATGA+GGG - chr7_4:51374230-51374249 None:intergenic 25.0%
! ACATTTCAATCTCAAAAATG+AGG - chr7_4:51374231-51374250 None:intergenic 25.0%
! ATGAAAAAGACAATAAGAGA+AGG + chr7_4:51374295-51374314 Msa1161160:CDS 25.0%
!! TATCATTGTTTGTGATTTGT+TGG - chr7_4:51374425-51374444 None:intergenic 25.0%
! ATGCTTATCAAATCTGATAA+AGG + chr7_4:51374546-51374565 Msa1161160:CDS 25.0%
! ACCATCTGATATTTATCTAA+CGG + chr7_4:51374737-51374756 Msa1161160:intron 25.0%
! AAACAGTAGTAGATATTCAA+TGG - chr7_4:51374815-51374834 None:intergenic 25.0%
! AAAATTGTTACTGATATCAC+AGG + chr7_4:51375231-51375250 Msa1161160:CDS 25.0%
! ATCACATCTATTTATGTATG+AGG - chr7_4:51375344-51375363 None:intergenic 25.0%
! GACAGTAGTTAAAAATTTGA+CGG + chr7_4:51375401-51375420 Msa1161160:intron 25.0%
! AGTTAAAAATTTGACGGTTA+AGG + chr7_4:51375407-51375426 Msa1161160:intron 25.0%
!! ACTTTTGTTGGAAATAGATT+CGG - chr7_4:51375522-51375541 None:intergenic 25.0%
! TATTTATGTAAAGGAGAAGA+TGG + chr7_4:51375602-51375621 Msa1161160:CDS 25.0%
! CTAATTCAACTTCATAGTAA+AGG - chr7_4:51375924-51375943 None:intergenic 25.0%
!! TGAATTAGTTGATTTCACTA+AGG + chr7_4:51375936-51375955 Msa1161160:CDS 25.0%
! CAATTCAAAACATAAACACT+TGG + chr7_4:51375995-51376014 Msa1161160:intron 25.0%
!!! CTTTATTGATTTGGTATTGT+AGG + chr7_4:51376270-51376289 Msa1161160:intron 25.0%
! AAGCGTTAATTAAGTGAATT+AGG - chr7_4:51376454-51376473 None:intergenic 25.0%
! TGATTATTGATCCTAATAAC+AGG + chr7_4:51376782-51376801 Msa1161160:CDS 25.0%
! AATTCATTGTACCTGTTATT+AGG - chr7_4:51376796-51376815 None:intergenic 25.0%
! GCATATGATTGTGAATAAAT+AGG - chr7_4:51376835-51376854 None:intergenic 25.0%
!!! ACGTTTTCAATCTAATTTGT+TGG + chr7_4:51377026-51377045 Msa1161160:intron 25.0%
! CTCTTTTCATTTCATTCCAA+TGG + chr7_4:51373571-51373590 Msa1161160:exon 30.0%
GAATTTGTACTCAAGCAAAT+TGG + chr7_4:51373620-51373639 Msa1161160:CDS 30.0%
! ATGGTTTTTAACCTTCAACT+TGG - chr7_4:51373712-51373731 None:intergenic 30.0%
TGTACCATAAGTCAGATAAA+GGG + chr7_4:51373770-51373789 Msa1161160:intron 30.0%
! TTTAGAGGACAAGTTGAAAA+TGG + chr7_4:51373832-51373851 Msa1161160:CDS 30.0%
CTAGAATCCAGTTATGATAA+AGG + chr7_4:51373862-51373881 Msa1161160:CDS 30.0%
TCCTCCTTTCATTTCAAATT+AGG + chr7_4:51373886-51373905 Msa1161160:CDS 30.0%
! TTGGCCTAATTTGAAATGAA+AGG - chr7_4:51373893-51373912 None:intergenic 30.0%
TTTCATTTCAAATTAGGCCA+AGG + chr7_4:51373892-51373911 Msa1161160:CDS 30.0%
! AATAAACAAGGTACTTACCT+TGG - chr7_4:51373912-51373931 None:intergenic 30.0%
AAGTTATTGAATTTGGTTGC+AGG + chr7_4:51374076-51374095 Msa1161160:intron 30.0%
TTGAGATTGAAATGTTGTGT+TGG + chr7_4:51374236-51374255 Msa1161160:CDS 30.0%
TAACAGTGAAATATGAAGCA+AGG + chr7_4:51374511-51374530 Msa1161160:intron 30.0%
TATCAAATCTGATAAAGGTG+TGG + chr7_4:51374551-51374570 Msa1161160:CDS 30.0%
! AATATTGACTGCAGAGAATT+TGG + chr7_4:51374787-51374806 Msa1161160:intron 30.0%
ATAGAATACTGATCAATCTC+TGG + chr7_4:51374881-51374900 Msa1161160:intron 30.0%
TAGAATACTGATCAATCTCT+GGG + chr7_4:51374882-51374901 Msa1161160:intron 30.0%
AATTAACATCAAACTTGAGC+TGG + chr7_4:51375200-51375219 Msa1161160:CDS 30.0%
AAAATTAATAAAGCCGGTGA+AGG + chr7_4:51375273-51375292 Msa1161160:CDS 30.0%
AAATTAATAAAGCCGGTGAA+GGG + chr7_4:51375274-51375293 Msa1161160:CDS 30.0%
AAGATGGTACAATTATTGAG+AGG + chr7_4:51375618-51375637 Msa1161160:CDS 30.0%
TGTTTCCTTGCAAATTACTA+TGG - chr7_4:51375885-51375904 None:intergenic 30.0%
! TAGTAATTTGCAAGGAAACA+AGG + chr7_4:51375885-51375904 Msa1161160:CDS 30.0%
! TTTTCGCAACTTCTATAAAC+AGG + chr7_4:51376047-51376066 Msa1161160:intron 30.0%
! TGAGTTTCCATTTTCCAAAA+TGG - chr7_4:51376078-51376097 None:intergenic 30.0%
TCAAAGAAATCATGCACAAA+TGG + chr7_4:51376206-51376225 Msa1161160:intron 30.0%
CTCAATGCAATTTAACTAGA+TGG + chr7_4:51376231-51376250 Msa1161160:intron 30.0%
! TGCTGCTTGTAAACTTAAAT+TGG + chr7_4:51376381-51376400 Msa1161160:CDS 30.0%
CTACATCTGTCTTAATAGAA+AGG - chr7_4:51376517-51376536 None:intergenic 30.0%
TAAAGAGCCTTCACATTTAA+GGG - chr7_4:51376694-51376713 None:intergenic 30.0%
ATACCTTAAAACATCAGACT+TGG + chr7_4:51376729-51376748 Msa1161160:CDS 30.0%
TGTCAATATCACGTTTAATG+TGG - chr7_4:51376924-51376943 None:intergenic 30.0%
CAACACCGACATATATAATT+AGG - chr7_4:51376996-51377015 None:intergenic 30.0%
CTAATTATATATGTCGGTGT+TGG + chr7_4:51376994-51377013 Msa1161160:intron 30.0%
CATAGAATCAACCTCAAAAT+TGG + chr7_4:51377311-51377330 Msa1161160:three_prime_UTR 30.0%
TTCTTCTTTATTCAAGTACG+AGG - chr7_4:51377339-51377358 None:intergenic 30.0%
AAGAAAGGATAAGCCGTTAT+TGG - chr7_4:51373517-51373536 None:intergenic 35.0%
! GAGGTTCAAGTTTCTAAGAA+AGG - chr7_4:51373532-51373551 None:intergenic 35.0%
CTCAAGCAAATTGGAAATGA+AGG + chr7_4:51373629-51373648 Msa1161160:CDS 35.0%
!! TTCTTAGAAAAGGTGTCACT+TGG + chr7_4:51373666-51373685 Msa1161160:CDS 35.0%
CTGTACCATAAGTCAGATAA+AGG + chr7_4:51373769-51373788 Msa1161160:intron 35.0%
ATGACCCTTTATCTGACTTA+TGG - chr7_4:51373777-51373796 None:intergenic 35.0%
! GACCTTTCAGTTCATTTTAG+AGG + chr7_4:51373817-51373836 Msa1161160:intron 35.0%
!! GTCCTCTAAAATGAACTGAA+AGG - chr7_4:51373822-51373841 None:intergenic 35.0%
! TCATAACTGGATTCTAGAGA+TGG - chr7_4:51373859-51373878 None:intergenic 35.0%
! GCCTAATTTGAAATGAAAGG+AGG - chr7_4:51373890-51373909 None:intergenic 35.0%
CTAGCAGTATGCAATAAACA+AGG - chr7_4:51373924-51373943 None:intergenic 35.0%
AGGTGAAGTAATCAAAGGTT+GGG + chr7_4:51374096-51374115 Msa1161160:intron 35.0%
GAGTTGCTACTATGAAGAAA+GGG + chr7_4:51374125-51374144 Msa1161160:CDS 35.0%
AGTTGCTACTATGAAGAAAG+GGG + chr7_4:51374126-51374145 Msa1161160:CDS 35.0%
TCAAAAATGAGGGTTGCATT+AGG - chr7_4:51374220-51374239 None:intergenic 35.0%
AAGACAATAAGAGAAGGAGA+AGG + chr7_4:51374301-51374320 Msa1161160:CDS 35.0%
AATAAGAGAAGGAGAAGGAT+GGG + chr7_4:51374306-51374325 Msa1161160:CDS 35.0%
TATGAAGCAAGGCTTGAAAA+TGG + chr7_4:51374522-51374541 Msa1161160:CDS 35.0%
ATGAAGCAAGGCTTGAAAAT+GGG + chr7_4:51374523-51374542 Msa1161160:CDS 35.0%
GTGGAGTTTAATGTAAGTGA+TGG + chr7_4:51374570-51374589 Msa1161160:CDS 35.0%
GATAGAATATCAGATGACTG+AGG + chr7_4:51374680-51374699 Msa1161160:intron 35.0%
GCCGTTAGATAAATATCAGA+TGG - chr7_4:51374741-51374760 None:intergenic 35.0%
GCAGTAAAGACAATGAGAAA+AGG + chr7_4:51374944-51374963 Msa1161160:intron 35.0%
! TCAGGACATAATTTTGCAGA+TGG + chr7_4:51375117-51375136 Msa1161160:intron 35.0%
CAGTAAATCATCAAGCTCAA+TGG - chr7_4:51375169-51375188 None:intergenic 35.0%
! CATTGAGCTTGATGATTTAC+TGG + chr7_4:51375167-51375186 Msa1161160:CDS 35.0%
CAATGTGAGTCATTCAATCT+CGG + chr7_4:51375456-51375475 Msa1161160:intron 35.0%
GGTACAATTATTGAGAGGAA+AGG + chr7_4:51375623-51375642 Msa1161160:CDS 35.0%
TATTGAGAGGAAAGGATCAA+AGG + chr7_4:51375631-51375650 Msa1161160:CDS 35.0%
! TCTTGAGTTGTGAACTCAAA+AGG - chr7_4:51375662-51375681 None:intergenic 35.0%
! TTTGAGTTCACAACTCAAGA+AGG + chr7_4:51375662-51375681 Msa1161160:CDS 35.0%
! TGTGACCATAGTAATTTGCA+AGG + chr7_4:51375877-51375896 Msa1161160:CDS 35.0%
! ATAAACAGGAGAAGCCATTT+TGG + chr7_4:51376061-51376080 Msa1161160:intron 35.0%
TGATGGAAATCTGCTATTCA+AGG + chr7_4:51376131-51376150 Msa1161160:CDS 35.0%
TATTCAAGGCTCAAAGTTTC+AGG + chr7_4:51376145-51376164 Msa1161160:CDS 35.0%
CGCATCCAAGAAATATGAAA+AGG + chr7_4:51376170-51376189 Msa1161160:CDS 35.0%
! GCAGACCTTTTCATATTTCT+TGG - chr7_4:51376178-51376197 None:intergenic 35.0%
TTTGATCACACATTCAGTGA+CGG + chr7_4:51376310-51376329 Msa1161160:CDS 35.0%
CAAATTACAGGATAATCTCG+AGG - chr7_4:51376356-51376375 None:intergenic 35.0%
AGCAGCATTGTTCAAATTAC+AGG - chr7_4:51376368-51376387 None:intergenic 35.0%
TCGCTCTGTCTCATATTAAA+CGG + chr7_4:51376565-51376584 Msa1161160:intron 35.0%
AGTTGATCATGTCTTGAAAC+AGG + chr7_4:51376654-51376673 Msa1161160:intron 35.0%
CATTTAAGGGATCTTGTTCT+AGG - chr7_4:51376681-51376700 None:intergenic 35.0%
ACAAGATCCCTTAAATGTGA+AGG + chr7_4:51376684-51376703 Msa1161160:CDS 35.0%
GTAAAGAGCCTTCACATTTA+AGG - chr7_4:51376695-51376714 None:intergenic 35.0%
!!! CTGATGTTTTAAGGTATGCT+TGG - chr7_4:51376726-51376745 None:intergenic 35.0%
! TCTCCAAGTCTGATGTTTTA+AGG - chr7_4:51376735-51376754 None:intergenic 35.0%
CAATGTCCATGTATTGTCTA+TGG - chr7_4:51376901-51376920 None:intergenic 35.0%
AGAGCTCAAAATGAAGCAAA+AGG + chr7_4:51377135-51377154 Msa1161160:CDS 35.0%
ATCTGACATCTTTAGCACAA+TGG + chr7_4:51377174-51377193 Msa1161160:CDS 35.0%
TCTTTAGCACAATGGTTTCA+AGG + chr7_4:51377182-51377201 Msa1161160:CDS 35.0%
GTTTCTGCATCAGTAACATT+TGG - chr7_4:51377292-51377311 None:intergenic 35.0%
!!! TTTTGTAGAGAGAGTGCCAT+TGG - chr7_4:51373590-51373609 None:intergenic 40.0%
! ACTTGGCAAACTCCATTTTC+TGG + chr7_4:51373683-51373702 Msa1161160:CDS 40.0%
TCAACTTGGTCACCAGAAAA+TGG - chr7_4:51373698-51373717 None:intergenic 40.0%
!! TTTTCTGGTGACCAAGTTGA+AGG + chr7_4:51373698-51373717 Msa1161160:CDS 40.0%
GTTGCAGGTGAAGTAATCAA+AGG + chr7_4:51374091-51374110 Msa1161160:intron 40.0%
CAGGTGAAGTAATCAAAGGT+TGG + chr7_4:51374095-51374114 Msa1161160:intron 40.0%
GTAATCAAAGGTTGGGATGA+AGG + chr7_4:51374103-51374122 Msa1161160:CDS 40.0%
GGAGTTGCTACTATGAAGAA+AGG + chr7_4:51374124-51374143 Msa1161160:CDS 40.0%
ATACCACCTTCCTTAGCATA+TGG + chr7_4:51374166-51374185 Msa1161160:CDS 40.0%
TACCACCTTCCTTAGCATAT+GGG + chr7_4:51374167-51374186 Msa1161160:CDS 40.0%
! TTTTCCCCATATGCTAAGGA+AGG - chr7_4:51374175-51374194 None:intergenic 40.0%
TCCTTAGCATATGGGGAAAA+AGG + chr7_4:51374175-51374194 Msa1161160:CDS 40.0%
! ACCTTTTTCCCCATATGCTA+AGG - chr7_4:51374179-51374198 None:intergenic 40.0%
GTTGCATTAGGAGGAATCAA+CGG - chr7_4:51374208-51374227 None:intergenic 40.0%
AAAATGAGGGTTGCATTAGG+AGG - chr7_4:51374217-51374236 None:intergenic 40.0%
CAATAAGAGAAGGAGAAGGA+TGG + chr7_4:51374305-51374324 Msa1161160:CDS 40.0%
! AGCACTTCATCAAGCTCTTT+TGG - chr7_4:51374337-51374356 None:intergenic 40.0%
! AAAGAGCTTGATGAAGTGCT+AGG + chr7_4:51374337-51374356 Msa1161160:CDS 40.0%
!! ATCTCTGGGATGCTTCAATT+AGG + chr7_4:51374896-51374915 Msa1161160:intron 40.0%
TGTCTTTACTGCAATGCTCA+TGG - chr7_4:51374936-51374955 None:intergenic 40.0%
TCAAACTTGAGCTGGTATCA+TGG + chr7_4:51375208-51375227 Msa1161160:CDS 40.0%
TTCACATGTGATCCTTCGTT+AGG - chr7_4:51375309-51375328 None:intergenic 40.0%
TAACGAAGGATCACATGTGA+AGG + chr7_4:51375308-51375327 Msa1161160:CDS 40.0%
AACGAAGGATCACATGTGAA+GGG + chr7_4:51375309-51375328 Msa1161160:CDS 40.0%
GAAAAAAGCTGAACAAGCTC+TGG + chr7_4:51375831-51375850 Msa1161160:CDS 40.0%
!! GGAGAAGCCATTTTGGAAAA+TGG + chr7_4:51376068-51376087 Msa1161160:intron 40.0%
! TGTGAGCAGAAAAAGCATGA+TGG + chr7_4:51376114-51376133 Msa1161160:CDS 40.0%
GTGCATGATTTCTTTGATCG+CGG - chr7_4:51376203-51376222 None:intergenic 40.0%
CCATGTATTGTCTATGGTAG+TGG - chr7_4:51376895-51376914 None:intergenic 40.0%
CCACTACCATAGACAATACA+TGG + chr7_4:51376892-51376911 Msa1161160:intron 40.0%
! AGTACGAGGATCCAATTTTG+AGG - chr7_4:51377325-51377344 None:intergenic 40.0%
GGAGGACCCTTTATCATAAC+TGG - chr7_4:51373872-51373891 None:intergenic 45.0%
ACCACCTTCCTTAGCATATG+GGG + chr7_4:51374168-51374187 Msa1161160:CDS 45.0%
AGTAGCATCAGAGACTTGAC+TGG + chr7_4:51374259-51374278 Msa1161160:CDS 45.0%
ATCAGAGACTTGACTGGTGA+TGG + chr7_4:51374265-51374284 Msa1161160:CDS 45.0%
TTTACTGCAATGCTCATGGC+TGG - chr7_4:51374932-51374951 None:intergenic 45.0%
GACAATGAGAAAAGGCGAAG+TGG + chr7_4:51374952-51374971 Msa1161160:intron 45.0%
CATCGACAGTAGTGACTGTT+GGG - chr7_4:51375377-51375396 None:intergenic 45.0%
TCATCGACAGTAGTGACTGT+TGG - chr7_4:51375378-51375397 None:intergenic 45.0%
ACAGTCACTACTGTCGATGA+TGG + chr7_4:51375378-51375397 Msa1161160:intron 45.0%
CAGTCACTACTGTCGATGAT+GGG + chr7_4:51375379-51375398 Msa1161160:intron 45.0%
! AAGAGTACACTGAAGCTGCT+AGG + chr7_4:51376404-51376423 Msa1161160:CDS 45.0%
TCCCCATATGCTAAGGAAGG+TGG - chr7_4:51374172-51374191 None:intergenic 50.0%
GCATTAGGAGGAATCAACGG+CGG - chr7_4:51374205-51374224 None:intergenic 50.0%
!! AGAGACTTGACTGGTGATGG+AGG + chr7_4:51374268-51374287 Msa1161160:CDS 50.0%
AGGACGATCAAACCCTTCAC+CGG - chr7_4:51375289-51375308 None:intergenic 50.0%
GGGTTTGATCGTCCTAACGA+AGG + chr7_4:51375294-51375313 Msa1161160:CDS 50.0%
AGCTGCTAGGCTATGCACAA+AGG + chr7_4:51376417-51376436 Msa1161160:CDS 50.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 51373510 51377367 51373510 ID=Msa1161160;Name=Msa1161160
chr7_4 mRNA 51373510 51377367 51373510 ID=Msa1161160-mRNA-1;Parent=Msa1161160;Name=Msa1161160-mRNA-1;_AED=0.15;_eAED=0.15;_QI=80|0.9|0.90|1|1|1|11|154|504
chr7_4 exon 51373510 51373719 51373510 ID=Msa1161160-mRNA-1:exon:14475;Parent=Msa1161160-mRNA-1
chr7_4 exon 51373827 51373913 51373827 ID=Msa1161160-mRNA-1:exon:14476;Parent=Msa1161160-mRNA-1
chr7_4 exon 51374098 51374358 51374098 ID=Msa1161160-mRNA-1:exon:14477;Parent=Msa1161160-mRNA-1
chr7_4 exon 51374517 51374591 51374517 ID=Msa1161160-mRNA-1:exon:14478;Parent=Msa1161160-mRNA-1
chr7_4 exon 51375121 51375330 51375121 ID=Msa1161160-mRNA-1:exon:14479;Parent=Msa1161160-mRNA-1
chr7_4 exon 51375597 51375683 51375597 ID=Msa1161160-mRNA-1:exon:14480;Parent=Msa1161160-mRNA-1
chr7_4 exon 51375791 51375957 51375791 ID=Msa1161160-mRNA-1:exon:14481;Parent=Msa1161160-mRNA-1
chr7_4 exon 51376069 51376191 51376069 ID=Msa1161160-mRNA-1:exon:14482;Parent=Msa1161160-mRNA-1
chr7_4 exon 51376292 51376438 51376292 ID=Msa1161160-mRNA-1:exon:14483;Parent=Msa1161160-mRNA-1
chr7_4 exon 51376676 51376803 51376676 ID=Msa1161160-mRNA-1:exon:14484;Parent=Msa1161160-mRNA-1
chr7_4 exon 51377114 51377367 51377114 ID=Msa1161160-mRNA-1:exon:14485;Parent=Msa1161160-mRNA-1
chr7_4 five_prime_UTR 51373510 51373589 51373510 ID=Msa1161160-mRNA-1:five_prime_utr;Parent=Msa1161160-mRNA-1
chr7_4 CDS 51373590 51373719 51373590 ID=Msa1161160-mRNA-1:cds;Parent=Msa1161160-mRNA-1
chr7_4 CDS 51373827 51373913 51373827 ID=Msa1161160-mRNA-1:cds;Parent=Msa1161160-mRNA-1
chr7_4 CDS 51374098 51374358 51374098 ID=Msa1161160-mRNA-1:cds;Parent=Msa1161160-mRNA-1
chr7_4 CDS 51374517 51374591 51374517 ID=Msa1161160-mRNA-1:cds;Parent=Msa1161160-mRNA-1
chr7_4 CDS 51375121 51375330 51375121 ID=Msa1161160-mRNA-1:cds;Parent=Msa1161160-mRNA-1
chr7_4 CDS 51375597 51375683 51375597 ID=Msa1161160-mRNA-1:cds;Parent=Msa1161160-mRNA-1
chr7_4 CDS 51375791 51375957 51375791 ID=Msa1161160-mRNA-1:cds;Parent=Msa1161160-mRNA-1
chr7_4 CDS 51376069 51376191 51376069 ID=Msa1161160-mRNA-1:cds;Parent=Msa1161160-mRNA-1
chr7_4 CDS 51376292 51376438 51376292 ID=Msa1161160-mRNA-1:cds;Parent=Msa1161160-mRNA-1
chr7_4 CDS 51376676 51376803 51376676 ID=Msa1161160-mRNA-1:cds;Parent=Msa1161160-mRNA-1
chr7_4 CDS 51377114 51377213 51377114 ID=Msa1161160-mRNA-1:cds;Parent=Msa1161160-mRNA-1
chr7_4 three_prime_UTR 51377214 51377367 51377214 ID=Msa1161160-mRNA-1:three_prime_utr;Parent=Msa1161160-mRNA-1
Gene Sequence

>Msa1161160

ATGGCACTCTCTCTACAAAATGAAGACTCAGAATTTGTACTCAAGCAAATTGGAAATGAAGGTCTCACTAAACAGATTCTTAGAAAAGGTGTCACTTGGCAAACTCCATTTTCTGGTGACCAAGTTGAAGTTCATTTTAGAGGACAAGTTGAAAATGGACCATCTCTAGAATCCAGTTATGATAAAGGGTCCTCCTTTCATTTCAAATTAGGCCAAGGTGAAGTAATCAAAGGTTGGGATGAAGGAGTTGCTACTATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTTCCTTAGCATATGGGGAAAAAGGTTCTCCGCCGTTGATTCCTCCTAATGCAACCCTCATTTTTGAGATTGAAATGTTGTGTTGGAGTAGCATCAGAGACTTGACTGGTGATGGAGGAATAATGAAAAAGACAATAAGAGAAGGAGAAGGATGGGCTACTCCAAAAGAGCTTGATGAAGTGCTAGTGAAATATGAAGCAAGGCTTGAAAATGGGATGCTTATCAAATCTGATAAAGGTGTGGAGTTTAATGTAAGTGATGGACATAATTTTGCAGATGGCGTTATTAGTCAAAATTCAAATAGAACCATTGAGCTTGATGATTTACTGGATTCTAATTTAATTAACATCAAACTTGAGCTGGTATCATGGAAAATTGTTACTGATATCACAGGAGATAAGAAAATACTGAAAAAAATTAATAAAGCCGGTGAAGGGTTTGATCGTCCTAACGAAGGATCACATGTGAAGGTCATATATTTATGTAAAGGAGAAGATGGTACAATTATTGAGAGGAAAGGATCAAAGGAAGAACCTTTTGAGTTCACAACTCAAGAAGAACAAGTGCATGAGTGTCTAGAAAGAGCAATAATGACAATGAAAAAAGCTGAACAAGCTCTGGTGACTATCAATGCTGAATATTTCTGTGACCATAGTAATTTGCAAGGAAACAAGGCTAATAATAAAATCCTTTACTATGAAGTTGAATTAGTTGATTTCACTAAGGAGAAGCCATTTTGGAAAATGGAAACTCAAGAGAAACTAGAAGCTTGTGAGCAGAAAAAGCATGATGGAAATCTGCTATTCAAGGCTCAAAGTTTCAGGCGCGCATCCAAGAAATATGAAAAGGCTGTAAAATACATTGAATTTGATCACACATTCAGTGACGGCGAGAAGCGTCATGCTAATACCTCGAGATTATCCTGTAATTTGAACAATGCTGCTTGTAAACTTAAATTGGAAGAGTACACTGAAGCTGCTAGGCTATGCACAAAGGTCCTAGAACAAGATCCCTTAAATGTGAAGGCTCTTTACAGAAGATGCCAAGCATACCTTAAAACATCAGACTTGGAGAAAGCTGAAGCTGACATTAAAAGAGCTTTGATTATTGATCCTAATAACAGAGAAATTAAACTTGAGTACAAAGAGCTCAAAATGAAGCAAAAGGAATACAATAAATATGAATCTGACATCTTTAGCACAATGGTTTCAAGGATGAATTAG

Protein sequence

>Msa1161160

MALSLQNEDSEFVLKQIGNEGLTKQILRKGVTWQTPFSGDQVEVHFRGQVENGPSLESSYDKGSSFHFKLGQGEVIKGWDEGVATMKKGERAIFKIPPSLAYGEKGSPPLIPPNATLIFEIEMLCWSSIRDLTGDGGIMKKTIREGEGWATPKELDEVLVKYEARLENGMLIKSDKGVEFNVSDGHNFADGVISQNSNRTIELDDLLDSNLINIKLELVSWKIVTDITGDKKILKKINKAGEGFDRPNEGSHVKVIYLCKGEDGTIIERKGSKEEPFEFTTQEEQVHECLERAIMTMKKAEQALVTINAEYFCDHSNLQGNKANNKILYYEVELVDFTKEKPFWKMETQEKLEACEQKKHDGNLLFKAQSFRRASKKYEKAVKYIEFDHTFSDGEKRHANTSRLSCNLNNAACKLKLEEYTEAARLCTKVLEQDPLNVKALYRRCQAYLKTSDLEKAEADIKRALIIDPNNREIKLEYKELKMKQKEYNKYESDIFSTMVSRMN*