Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307130 | XP_013445393.1 | 92.398 | 342 | 16 | 1 | 1 | 332 | 3 | 344 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307130 | sp|Q9LTQ0|RTL2_ARATH | 50.147 | 341 | 150 | 5 | 5 | 332 | 58 | 391 | 1.35e-111 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307130 | A0A072TPL1 | 92.398 | 342 | 16 | 1 | 1 | 332 | 3 | 344 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1307130 | 0.806011 | 1.011696e-49 | -8.615850e-47 |
| Msa0105420 | Msa1307130 | 0.803504 | 3.377465e-49 | -8.615850e-47 |
| Msa0657970 | Msa1307130 | 0.800390 | 1.474219e-48 | -8.615850e-47 |
| Msa0696770 | Msa1307130 | 0.800456 | 1.429035e-48 | -8.615850e-47 |
| Msa0810480 | Msa1307130 | 0.800398 | 1.468797e-48 | -8.615850e-47 |
| Msa0832370 | Msa1307130 | 0.800915 | 1.151758e-48 | -8.615850e-47 |
| Msa0141230 | Msa1307130 | 0.800949 | 1.133878e-48 | -8.615850e-47 |
| Msa0157290 | Msa1307130 | 0.805790 | 1.126205e-49 | -8.615850e-47 |
| Msa1228210 | Msa1307130 | 0.811093 | 8.318257e-51 | -8.615850e-47 |
| Msa1271290 | Msa1307130 | 0.812408 | 4.304902e-51 | -8.615850e-47 |
| Msa1307130 | Msa1308380 | 0.828645 | 8.010875e-55 | -8.615850e-47 |
| Msa1307130 | Msa1324550 | 0.803003 | 4.288881e-49 | -8.615850e-47 |
| Msa1307130 | Msa1325740 | 0.912756 | 1.352053e-83 | -8.615850e-47 |
| Msa1307130 | Msa1381940 | 0.800412 | 1.458975e-48 | -8.615850e-47 |
| Msa1307130 | Msa1423880 | 0.814464 | 1.520209e-51 | -8.615850e-47 |
| Msa0371540 | Msa1307130 | 0.807280 | 5.459612e-50 | -8.615850e-47 |
| Msa0388960 | Msa1307130 | 0.807747 | 4.346531e-50 | -8.615850e-47 |
| Msa0427880 | Msa1307130 | 0.805506 | 1.291905e-49 | -8.615850e-47 |
| Msa0466060 | Msa1307130 | 0.812546 | 4.015242e-51 | -8.615850e-47 |
| Msa0474110 | Msa1307130 | 0.807499 | 4.905886e-50 | -8.615850e-47 |
| Msa1000020 | Msa1307130 | 0.821937 | 3.095271e-53 | -8.615850e-47 |
| Msa1082500 | Msa1307130 | 0.815804 | 7.661531e-52 | -8.615850e-47 |
| Msa0238890 | Msa1307130 | 0.804271 | 2.340616e-49 | -8.615850e-47 |
| Msa0242480 | Msa1307130 | 0.814488 | 1.501736e-51 | -8.615850e-47 |
| Msa1162550 | Msa1307130 | -0.809112 | 2.222090e-50 | -8.615850e-47 |
| Msa0484780 | Msa1307130 | 0.806597 | 7.615445e-50 | -8.615850e-47 |
| Msa0517340 | Msa1307130 | 0.809394 | 1.933600e-50 | -8.615850e-47 |
| Msa0523460 | Msa1307130 | 0.801004 | 1.104518e-48 | -8.615850e-47 |
| Msa0867890 | Msa1307130 | 0.803700 | 3.075518e-49 | -8.615850e-47 |
| Msa0880140 | Msa1307130 | 0.805037 | 1.619939e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307130 | MtrunA17_Chr8g0360081 | 92.398 | 342 | 16 | 1 | 1 | 332 | 3 | 344 | 0.0 | 640 |
| Msa1307130 | MtrunA17_Chr3g0130581 | 75.872 | 344 | 71 | 2 | 1 | 332 | 3 | 346 | 0.0 | 521 |
| Msa1307130 | MtrunA17_Chr3g0119181 | 42.324 | 241 | 119 | 7 | 10 | 238 | 72 | 304 | 8.43e-50 | 168 |
| Msa1307130 | MtrunA17_Chr7g0276451 | 34.402 | 343 | 192 | 8 | 9 | 328 | 1544 | 1876 | 1.12e-47 | 172 |
| Msa1307130 | MtrunA17_Chr3g0119171 | 41.036 | 251 | 116 | 8 | 7 | 238 | 227 | 464 | 7.14e-46 | 163 |
| Msa1307130 | MtrunA17_Chr3g0119071 | 38.583 | 254 | 128 | 7 | 6 | 242 | 165 | 407 | 3.14e-41 | 150 |
| Msa1307130 | MtrunA17_Chr3g0136471 | 28.224 | 411 | 204 | 11 | 5 | 328 | 1291 | 1697 | 1.36e-34 | 134 |
| Msa1307130 | MtrunA17_Chr2g0292651 | 32.661 | 248 | 137 | 10 | 6 | 231 | 1136 | 1375 | 3.07e-27 | 112 |
| Msa1307130 | MtrunA17_Chr1g0179081 | 29.832 | 238 | 147 | 6 | 6 | 225 | 1163 | 1398 | 3.66e-26 | 109 |
| Msa1307130 | MtrunA17_Chr8g0368761 | 30.328 | 244 | 149 | 6 | 6 | 231 | 1140 | 1380 | 8.40e-26 | 108 |
| Msa1307130 | MtrunA17_Chr4g0065391 | 27.857 | 280 | 166 | 7 | 1 | 250 | 1195 | 1468 | 9.67e-23 | 99.4 |
| Msa1307130 | MtrunA17_Chr3g0119211 | 48.571 | 70 | 34 | 1 | 7 | 74 | 55 | 124 | 5.15e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307130 | AT3G20420.1 | 50.147 | 341 | 150 | 5 | 5 | 332 | 58 | 391 | 1.37e-112 | 332 |
| Msa1307130 | AT5G45150.1 | 34.447 | 389 | 180 | 9 | 5 | 327 | 2 | 381 | 6.27e-56 | 196 |
| Msa1307130 | AT5G45150.1 | 36.015 | 261 | 144 | 6 | 2 | 249 | 410 | 660 | 4.46e-42 | 156 |
| Msa1307130 | AT5G45150.1 | 42.308 | 78 | 43 | 1 | 252 | 327 | 834 | 911 | 1.89e-12 | 68.9 |
| Msa1307130 | AT1G01040.1 | 35.876 | 354 | 189 | 7 | 7 | 328 | 1559 | 1906 | 7.72e-52 | 184 |
| Msa1307130 | AT1G01040.2 | 35.876 | 354 | 189 | 7 | 7 | 328 | 1560 | 1907 | 7.72e-52 | 184 |
| Msa1307130 | AT5G45150.2 | 36.015 | 261 | 144 | 6 | 2 | 249 | 214 | 464 | 2.86e-42 | 156 |
| Msa1307130 | AT5G45150.2 | 42.308 | 78 | 43 | 1 | 252 | 327 | 638 | 715 | 1.94e-12 | 68.6 |
| Msa1307130 | AT5G45150.2 | 43.662 | 71 | 38 | 1 | 259 | 327 | 115 | 185 | 1.92e-11 | 65.5 |
| Msa1307130 | AT5G45150.3 | 36.015 | 261 | 144 | 6 | 2 | 249 | 214 | 464 | 2.86e-42 | 156 |
| Msa1307130 | AT5G45150.3 | 42.308 | 78 | 43 | 1 | 252 | 327 | 638 | 715 | 1.94e-12 | 68.6 |
| Msa1307130 | AT5G45150.3 | 43.662 | 71 | 38 | 1 | 259 | 327 | 115 | 185 | 1.92e-11 | 65.5 |
| Msa1307130 | AT4G15417.1 | 36.667 | 240 | 133 | 6 | 7 | 234 | 29 | 261 | 2.09e-37 | 135 |
| Msa1307130 | AT4G15417.2 | 36.667 | 240 | 133 | 6 | 7 | 234 | 54 | 286 | 3.10e-37 | 135 |
| Msa1307130 | AT3G43920.3 | 25.907 | 386 | 225 | 9 | 4 | 332 | 1185 | 1566 | 4.35e-31 | 124 |
| Msa1307130 | AT3G43920.2 | 25.907 | 386 | 225 | 9 | 4 | 332 | 1195 | 1576 | 4.36e-31 | 124 |
| Msa1307130 | AT3G43920.6 | 25.907 | 386 | 225 | 9 | 4 | 332 | 967 | 1348 | 4.38e-31 | 124 |
| Msa1307130 | AT3G43920.1 | 25.907 | 386 | 225 | 9 | 4 | 332 | 1146 | 1527 | 4.72e-31 | 124 |
| Msa1307130 | AT3G43920.4 | 25.907 | 386 | 225 | 9 | 4 | 332 | 1184 | 1565 | 5.02e-31 | 124 |
| Msa1307130 | AT3G43920.5 | 31.667 | 240 | 150 | 3 | 4 | 233 | 1185 | 1420 | 9.46e-31 | 123 |
| Msa1307130 | AT3G03300.3 | 33.854 | 192 | 104 | 7 | 6 | 180 | 1148 | 1333 | 2.83e-22 | 98.6 |
| Msa1307130 | AT3G03300.1 | 33.854 | 192 | 104 | 7 | 6 | 180 | 1148 | 1333 | 2.83e-22 | 98.6 |
| Msa1307130 | AT3G03300.4 | 33.854 | 192 | 104 | 7 | 6 | 180 | 935 | 1120 | 3.08e-22 | 98.2 |
| Msa1307130 | AT3G03300.2 | 33.854 | 192 | 104 | 7 | 6 | 180 | 1134 | 1319 | 3.77e-22 | 98.2 |
| Msa1307130 | AT5G20320.2 | 28.030 | 264 | 153 | 8 | 1 | 234 | 1272 | 1528 | 1.53e-19 | 90.5 |
| Msa1307130 | AT5G20320.2 | 30.909 | 165 | 87 | 5 | 6 | 149 | 1077 | 1235 | 2.63e-11 | 65.5 |
| Msa1307130 | AT5G20320.3 | 28.030 | 264 | 153 | 8 | 1 | 234 | 1061 | 1317 | 1.55e-19 | 90.5 |
| Msa1307130 | AT5G20320.3 | 30.909 | 165 | 87 | 5 | 6 | 149 | 866 | 1024 | 3.17e-11 | 65.1 |
| Msa1307130 | AT5G20320.1 | 28.030 | 264 | 153 | 8 | 1 | 234 | 1286 | 1542 | 1.78e-19 | 90.1 |
| Msa1307130 | AT5G20320.1 | 30.909 | 165 | 87 | 5 | 6 | 149 | 1091 | 1249 | 2.93e-11 | 65.1 |
Find 85 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGGAAGTCAACTCTTTA+AGG | 0.113980 | 8_4:-2388536 | Msa1307130:three_prime_UTR |
| CGTTCGTAGGAAACGGATTC+AGG | 0.236317 | 8_4:+2391506 | None:intergenic |
| GCAGATATTAAGAGGTCTTT+TGG | 0.236581 | 8_4:-2390301 | Msa1307130:intron |
| GTTGAACGTGAGAATGATTT+TGG | 0.257919 | 8_4:-2391266 | Msa1307130:CDS |
| GTTCGTTGGTGACGCTGTTT+TGG | 0.267706 | 8_4:-2391477 | Msa1307130:CDS |
| TACCATCTGGAGTGGCTATC+TGG | 0.295887 | 8_4:+2388839 | None:intergenic |
| ATAGACACTGGCAGTGCTTT+TGG | 0.317059 | 8_4:+2390164 | None:intergenic |
| CTGTCAAAAGCATGGGAAAA+AGG | 0.319648 | 8_4:-2390214 | Msa1307130:CDS |
| ATCAGTGTTTACCTGTATAC+TGG | 0.337933 | 8_4:+2389931 | None:intergenic |
| GTTTACCTGTATACTGGTTT+AGG | 0.347893 | 8_4:+2389937 | None:intergenic |
| GATGGTAGACTCCAGATGTT+AGG | 0.353438 | 8_4:-2388823 | Msa1307130:CDS |
| CCGCGGCGTCCTTGATGATT+CGG | 0.354038 | 8_4:-2388765 | Msa1307130:CDS |
| GCGGCAGTGGAGAAGATAAT+TGG | 0.354408 | 8_4:-2391584 | Msa1307130:CDS |
| AGAAGTTATATGCAATTTGC+GGG | 0.397906 | 8_4:-2389972 | Msa1307130:CDS |
| CACATACTGCCCTTGTTGTA+AGG | 0.404823 | 8_4:+2388741 | None:intergenic |
| AGTCAACTCTTTAAGGTTGA+AGG | 0.408733 | 8_4:-2388529 | Msa1307130:three_prime_UTR |
| AGATCATCCAGTGTTACTAT+TGG | 0.408886 | 8_4:+2390276 | None:intergenic |
| TGCTGCACGAGCAAGTTTCT+CGG | 0.416918 | 8_4:+2391367 | None:intergenic |
| AGGTGTAAGAGAGGAAAATA+TGG | 0.418619 | 8_4:+2391438 | None:intergenic |
| CGCGGCGTCCTTGATGATTC+GGG | 0.419403 | 8_4:-2388764 | Msa1307130:CDS |
| TCTGGAACGAAAACCGCAAC+CGG | 0.421181 | 8_4:-2390256 | Msa1307130:CDS |
| TACTCATTTAAATTTATACT+TGG | 0.428028 | 8_4:-2388553 | Msa1307130:three_prime_UTR |
| GACCCTTGTAAAGGCCTTGA+TGG | 0.430926 | 8_4:-2390021 | Msa1307130:CDS |
| TAGTTCATGCACGGCAATCT+TGG | 0.445790 | 8_4:+2390077 | None:intergenic |
| AATAGTAACACTGGATGATC+TGG | 0.448961 | 8_4:-2390274 | Msa1307130:CDS |
| TAGAGCGTTGTCACCGGTTG+CGG | 0.451536 | 8_4:+2390243 | None:intergenic |
| GGAAGATTCAATTGCGGCAG+TGG | 0.460922 | 8_4:-2391597 | Msa1307130:CDS |
| ACTGCCAGTGTCTATGTTGA+TGG | 0.474062 | 8_4:-2390156 | Msa1307130:CDS |
| GTTCGTAGGAAACGGATTCA+GGG | 0.474695 | 8_4:+2391507 | None:intergenic |
| CTTGGCTGCTTCAATTTCAA+AGG | 0.495502 | 8_4:+2389996 | None:intergenic |
| ACAACATCAGCAAGAATCTT+CGG | 0.499053 | 8_4:+2391212 | None:intergenic |
| CTCGAGACGTTCGTAGGAAA+CGG | 0.499376 | 8_4:+2391499 | None:intergenic |
| ATGGTAGACTCCAGATGTTA+GGG | 0.499843 | 8_4:-2388822 | Msa1307130:CDS |
| CTAATAATTAAGTTAATAAG+TGG | 0.500550 | 8_4:-2388656 | Msa1307130:three_prime_UTR |
| AATGGCCTAAACCAGTATAC+AGG | 0.502150 | 8_4:-2389942 | Msa1307130:intron |
| CAGAAGTTATATGCAATTTG+CGG | 0.502857 | 8_4:-2389973 | Msa1307130:CDS |
| CTTCTAGAAGCTTCTTGTTG+AGG | 0.505073 | 8_4:+2391552 | None:intergenic |
| GCTCGTGCAGCAGTCAATCA+TGG | 0.514774 | 8_4:-2391356 | Msa1307130:CDS |
| AACATCTGGAGTCTACCATC+TGG | 0.515801 | 8_4:+2388826 | None:intergenic |
| AGAGAGTTGACCGGCGTCAA+CGG | 0.526134 | 8_4:+2391415 | None:intergenic |
| TGTCTATGTTGATGGAGAGT+TGG | 0.531039 | 8_4:-2390148 | Msa1307130:CDS |
| GTACCATCAAGGCCTTTACA+AGG | 0.533151 | 8_4:+2390018 | None:intergenic |
| TCGGACATCATGGTAGTGGC+AGG | 0.540791 | 8_4:+2390042 | None:intergenic |
| TTTGGAGCCAATAGTAACAC+TGG | 0.541015 | 8_4:-2390283 | Msa1307130:CDS |
| TACTGCTTGCTCTGATCAGA+AGG | 0.545679 | 8_4:-2390121 | Msa1307130:CDS |
| ATCAAGGCCTTTACAAGGGT+CGG | 0.546856 | 8_4:+2390023 | None:intergenic |
| ATGATTCGGGCCTTACAACA+AGG | 0.549568 | 8_4:-2388751 | Msa1307130:CDS |
| TTTACAAGGGTCGGACATCA+TGG | 0.550600 | 8_4:+2390032 | None:intergenic |
| GATTCGTGAGTTTGCTGATG+CGG | 0.552297 | 8_4:-2391288 | Msa1307130:CDS |
| AATTGCATATAACTTCTGCT+TGG | 0.554513 | 8_4:+2389978 | None:intergenic |
| AACTGAACAGAAGATGAAGA+TGG | 0.558212 | 8_4:-2391618 | None:intergenic |
| ATCTCATAGAGCGTTGTCAC+CGG | 0.560294 | 8_4:+2390237 | None:intergenic |
| ATGATGTCCGACCCTTGTAA+AGG | 0.565853 | 8_4:-2390030 | Msa1307130:CDS |
| ATGAGATCTGTCAAAAGCAT+GGG | 0.566763 | 8_4:-2390221 | Msa1307130:CDS |
| CGGATTCAGGGTAAGAAGTG+TGG | 0.566918 | 8_4:+2391519 | None:intergenic |
| GGATTCAGGGTAAGAAGTGT+GGG | 0.570162 | 8_4:+2391520 | None:intergenic |
| CTGATCAGAAGGACATTGCA+AGG | 0.577177 | 8_4:-2390110 | Msa1307130:CDS |
| AGGGTCGGACATCATGGTAG+TGG | 0.585876 | 8_4:+2390038 | None:intergenic |
| GGATGAAAAGTCTCGGCTGA+AGG | 0.589224 | 8_4:-2388800 | Msa1307130:CDS |
| CAATTTCAAAGGTACCATCA+AGG | 0.595839 | 8_4:+2390007 | None:intergenic |
| TTGTAAGGCCCGAATCATCA+AGG | 0.599006 | 8_4:+2388756 | None:intergenic |
| TATGAGATCTGTCAAAAGCA+TGG | 0.599359 | 8_4:-2390222 | Msa1307130:CDS |
| TACGAACGTCTCGAGTTCGT+TGG | 0.604550 | 8_4:-2391491 | Msa1307130:CDS |
| GAGATAAGACAATCGAGGAA+TGG | 0.616598 | 8_4:-2390189 | Msa1307130:CDS |
| CTCTCCATCAACATAGACAC+TGG | 0.622843 | 8_4:+2390152 | None:intergenic |
| TGTTAGGGGATGAAAAGTCT+CGG | 0.624865 | 8_4:-2388807 | Msa1307130:CDS |
| GAGTTGACCGGCGTCAACGG+AGG | 0.628031 | 8_4:+2391418 | None:intergenic |
| TACACGTTCTAGTTCATGCA+CGG | 0.628329 | 8_4:+2390068 | None:intergenic |
| GTCACAAATATCTTCTTCTG+AGG | 0.633804 | 8_4:+2388868 | None:intergenic |
| TCTTACACCTCCGTTGACGC+CGG | 0.637160 | 8_4:-2391425 | Msa1307130:CDS |
| TGATTCGGGCCTTACAACAA+GGG | 0.638369 | 8_4:-2388750 | Msa1307130:CDS |
| GTCCAGATAGCCACTCCAGA+TGG | 0.639689 | 8_4:-2388841 | Msa1307130:CDS |
| AACGAACTCGAGACGTTCGT+AGG | 0.640436 | 8_4:+2391493 | None:intergenic |
| ACGTAGGAGAGAGAGTTGAC+CGG | 0.653720 | 8_4:+2391406 | None:intergenic |
| TACCATCAAGGCCTTTACAA+GGG | 0.658897 | 8_4:+2390019 | None:intergenic |
| CGTCAACGGAGGTGTAAGAG+AGG | 0.671005 | 8_4:+2391429 | None:intergenic |
| CTGGAGTCTACCATCTGGAG+TGG | 0.672296 | 8_4:+2388831 | None:intergenic |
| AACAGCATTGAGAAAGACGA+AGG | 0.690091 | 8_4:-2388895 | Msa1307130:intron |
| TGGAGTGGCTATCTGGACAG+AGG | 0.691402 | 8_4:+2388846 | None:intergenic |
| TGGTAGACTCCAGATGTTAG+GGG | 0.698473 | 8_4:-2388821 | Msa1307130:CDS |
| GAAGATGGAAGATTCAATTG+CGG | 0.703515 | 8_4:-2391603 | Msa1307130:CDS |
| CCGAATCATCAAGGACGCCG+CGG | 0.727934 | 8_4:+2388765 | None:intergenic |
| GAAGGATGCACAGAACTCCG+CGG | 0.742068 | 8_4:-2388782 | Msa1307130:CDS |
| TGCTGACATTAGCAGCACGT+AGG | 0.745064 | 8_4:+2391390 | None:intergenic |
| AGGTTGAGATAAGACAATCG+AGG | 0.766851 | 8_4:-2390194 | Msa1307130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATAACGAATTAATT+AGG | + | chr8_4:2389286-2389305 | None:intergenic | 10.0% |
| !! | TTCTTATAATTAACTAATTA+AGG | + | chr8_4:2390551-2390570 | None:intergenic | 10.0% |
| !! | TAGATTTATTTAATTGGAAA+AGG | - | chr8_4:2389224-2389243 | Msa1307130:intron | 15.0% |
| !! | TATTATATTATATTGTGTGT+TGG | - | chr8_4:2389735-2389754 | Msa1307130:intron | 15.0% |
| !!! | TTGTTTTTATTTTTTGATGA+AGG | - | chr8_4:2391421-2391440 | Msa1307130:CDS | 15.0% |
| !! | CTAATAATTAAGTTAATAAG+TGG | - | chr8_4:2391474-2391493 | Msa1307130:CDS | 15.0% |
| !! | TCAAATAAAAAGTTAATAAG+TGG | - | chr8_4:2391506-2391525 | Msa1307130:CDS | 15.0% |
| !! | TACTCATTTAAATTTATACT+TGG | - | chr8_4:2391577-2391596 | Msa1307130:CDS | 15.0% |
| !!! | ATTTTGATCTTAAGAGATTA+TGG | - | chr8_4:2388976-2388995 | Msa1307130:intron | 20.0% |
| !!! | TTTTGATCTTAAGAGATTAT+GGG | - | chr8_4:2388977-2388996 | Msa1307130:intron | 20.0% |
| !!! | AAATTATTGACCATGATTTT+AGG | - | chr8_4:2389626-2389645 | Msa1307130:intron | 20.0% |
| !! | AAAAATTACAAGCATTTATC+AGG | + | chr8_4:2389805-2389824 | None:intergenic | 20.0% |
| !!! | TAAATGCTTGTAATTTTTGT+TGG | - | chr8_4:2389807-2389826 | Msa1307130:intron | 20.0% |
| !! | TAGAATAGTTTGGAAATATA+CGG | - | chr8_4:2390328-2390347 | Msa1307130:intron | 20.0% |
| !!! | ATAATACTCACATCATTTTT+TGG | + | chr8_4:2390367-2390386 | None:intergenic | 20.0% |
| !!! | AAAATTCTAAGACTTTATCA+GGG | + | chr8_4:2390461-2390480 | None:intergenic | 20.0% |
| !!! | TAAAATTCTAAGACTTTATC+AGG | + | chr8_4:2390462-2390481 | None:intergenic | 20.0% |
| !! | TATTATTTCATATACTCAAG+TGG | - | chr8_4:2390583-2390602 | Msa1307130:intron | 20.0% |
| !! | AAGTAAGAAATCAGTTTAAA+AGG | + | chr8_4:2391209-2391228 | None:intergenic | 20.0% |
| !!! | AACTTTTTATTTGAAGAAGA+TGG | + | chr8_4:2391500-2391519 | None:intergenic | 20.0% |
| !!! | GATTTTGGTATTGTTTTGTA+TGG | - | chr8_4:2388879-2388898 | Msa1307130:CDS | 25.0% |
| !!! | CATGCTTCTTTTAATTTTGT+TGG | - | chr8_4:2389011-2389030 | Msa1307130:intron | 25.0% |
| ! | TGGGACTAGATTTATTTAAT+TGG | - | chr8_4:2389218-2389237 | Msa1307130:intron | 25.0% |
| ! | CCTTAAAAACATAGTTACAT+CGG | + | chr8_4:2389539-2389558 | None:intergenic | 25.0% |
| !!! | ATGTTTTTAAGGCAACATTT+TGG | - | chr8_4:2389547-2389566 | Msa1307130:intron | 25.0% |
| !! | TTTTGGTAAATAGGTTAGAA+TGG | - | chr8_4:2389564-2389583 | Msa1307130:intron | 25.0% |
| ! | TTTGGTAAATAGGTTAGAAT+GGG | - | chr8_4:2389565-2389584 | Msa1307130:intron | 25.0% |
| ! | AATAAGTTAGATGGTATAGT+AGG | - | chr8_4:2389661-2389680 | Msa1307130:intron | 25.0% |
| ! | ATAAGTTAGATGGTATAGTA+GGG | - | chr8_4:2389662-2389681 | Msa1307130:intron | 25.0% |
| !! | ACTTTTATATTACAGAAACC+AGG | + | chr8_4:2390280-2390299 | None:intergenic | 25.0% |
| !!! | GCATAACTTTTTTTGTTAAC+CGG | - | chr8_4:2390405-2390424 | Msa1307130:intron | 25.0% |
| !! | AGAATTTTACAATACCCAAA+TGG | - | chr8_4:2390473-2390492 | Msa1307130:intron | 25.0% |
| !! | GAATTTTACAATACCCAAAT+GGG | - | chr8_4:2390474-2390493 | Msa1307130:intron | 25.0% |
| ! | AATCAATTAACATCCCATTT+GGG | + | chr8_4:2390490-2390509 | None:intergenic | 25.0% |
| ! | AATGGATATAAATCATTCAC+TGG | + | chr8_4:2390517-2390536 | None:intergenic | 25.0% |
| ! | TCAAATTATAGGATCAATCA+AGG | - | chr8_4:2390615-2390634 | Msa1307130:intron | 25.0% |
| !!! | ATTCATGTGTATTTTCTAGT+TGG | - | chr8_4:2390778-2390797 | Msa1307130:intron | 25.0% |
| ! | CGAACAAATTAAAAATAGCA+AGG | + | chr8_4:2391151-2391170 | None:intergenic | 25.0% |
| ! | AAGAAATCAGTTTAAAAGGA+GGG | + | chr8_4:2391205-2391224 | None:intergenic | 25.0% |
| ! | TAAGAAATCAGTTTAAAAGG+AGG | + | chr8_4:2391206-2391225 | None:intergenic | 25.0% |
| !! | TTTGGTATTGTTTTGTATGG+TGG | - | chr8_4:2388882-2388901 | Msa1307130:CDS | 30.0% |
| !! | TATTGTTTTGTATGGTGGTT+TGG | - | chr8_4:2388887-2388906 | Msa1307130:CDS | 30.0% |
| ! | TACATGTGTTATTGTCATGT+TGG | - | chr8_4:2389115-2389134 | Msa1307130:intron | 30.0% |
| AACTGTAGTAACTTAGTTTC+AGG | + | chr8_4:2389260-2389279 | None:intergenic | 30.0% | |
| !! | CACACACATGATTGATTTTT+GGG | + | chr8_4:2389350-2389369 | None:intergenic | 30.0% |
| !! | ACACACACATGATTGATTTT+TGG | + | chr8_4:2389351-2389370 | None:intergenic | 30.0% |
| ATTTGTGGTAAGCAACATTA+CGG | + | chr8_4:2389423-2389442 | None:intergenic | 30.0% | |
| !! | CCGATGTAACTATGTTTTTA+AGG | - | chr8_4:2389536-2389555 | Msa1307130:intron | 30.0% |
| !! | AAGGCAACATTTTGGTAAAT+AGG | - | chr8_4:2389555-2389574 | Msa1307130:intron | 30.0% |
| CATTTGGCAAATAAGTTAGA+TGG | - | chr8_4:2389652-2389671 | Msa1307130:intron | 30.0% | |
| TAAGTTAGATGGTATAGTAG+GGG | - | chr8_4:2389663-2389682 | Msa1307130:intron | 30.0% | |
| ! | TTTTGTTGGCAGATATTAAG+AGG | - | chr8_4:2389821-2389840 | Msa1307130:intron | 30.0% |
| AATTGCATATAACTTCTGCT+TGG | + | chr8_4:2390155-2390174 | None:intergenic | 30.0% | |
| CAGAAGTTATATGCAATTTG+CGG | - | chr8_4:2390157-2390176 | Msa1307130:CDS | 30.0% | |
| AGAAGTTATATGCAATTTGC+GGG | - | chr8_4:2390158-2390177 | Msa1307130:CDS | 30.0% | |
| TATGCCATTGCAAATTATAG+TGG | + | chr8_4:2390231-2390250 | None:intergenic | 30.0% | |
| AAAACATTCATTCATAGTCC+TGG | - | chr8_4:2390259-2390278 | Msa1307130:CDS | 30.0% | |
| ATTTCCAAACTATTCTACAG+AGG | + | chr8_4:2390325-2390344 | None:intergenic | 30.0% | |
| GCTAAAACTTAAAACTGTTC+CGG | + | chr8_4:2390427-2390446 | None:intergenic | 30.0% | |
| GAATCAATTAACATCCCATT+TGG | + | chr8_4:2390491-2390510 | None:intergenic | 30.0% | |
| GATATAAATCATTCACTGGA+AGG | + | chr8_4:2390513-2390532 | None:intergenic | 30.0% | |
| ATTAAGGCAGACTTTGTAAA+TGG | + | chr8_4:2390535-2390554 | None:intergenic | 30.0% | |
| GGAGACAAATCTCAAATTAT+AGG | - | chr8_4:2390604-2390623 | Msa1307130:intron | 30.0% | |
| !!! | AGCTAGATTTTAGGATAGTT+TGG | - | chr8_4:2390717-2390736 | Msa1307130:intron | 30.0% |
| TGAAGTTTACTACATCTACA+TGG | + | chr8_4:2391050-2391069 | None:intergenic | 30.0% | |
| CTCGAGTTTATCTTCATATT+AGG | + | chr8_4:2391084-2391103 | None:intergenic | 30.0% | |
| ! | ACTCGAGCGATAATAATTTT+TGG | - | chr8_4:2391097-2391116 | Msa1307130:intron | 30.0% |
| AAAAAGTTAATAAGTGGCCA+TGG | - | chr8_4:2391512-2391531 | Msa1307130:CDS | 30.0% | |
| GAAGATGGAAGATTCAATTG+CGG | - | chr8_4:2388527-2388546 | Msa1307130:three_prime_UTR | 35.0% | |
| AGGTGTAAGAGAGGAAAATA+TGG | + | chr8_4:2388695-2388714 | None:intergenic | 35.0% | |
| ! | GTTGAACGTGAGAATGATTT+TGG | - | chr8_4:2388864-2388883 | Msa1307130:CDS | 35.0% |
| ACAACATCAGCAAGAATCTT+CGG | + | chr8_4:2388921-2388940 | None:intergenic | 35.0% | |
| TGATCTTAAGAGATTATGGG+TGG | - | chr8_4:2388980-2388999 | Msa1307130:intron | 35.0% | |
| TGTTATTGTCATGTTGGTGT+GGG | - | chr8_4:2389121-2389140 | Msa1307130:intron | 35.0% | |
| ! | ACCCAGGTTTACATTGATTA+TGG | - | chr8_4:2389198-2389217 | Msa1307130:intron | 35.0% |
| CCCATAATCAATGTAAACCT+GGG | + | chr8_4:2389202-2389221 | None:intergenic | 35.0% | |
| ! | CCCAGGTTTACATTGATTAT+GGG | - | chr8_4:2389199-2389218 | Msa1307130:intron | 35.0% |
| TCCCATAATCAATGTAAACC+TGG | + | chr8_4:2389203-2389222 | None:intergenic | 35.0% | |
| TTTGTGGTAAGCAACATTAC+GGG | + | chr8_4:2389422-2389441 | None:intergenic | 35.0% | |
| ! | GTAATGTTGCTTACCACAAA+TGG | - | chr8_4:2389422-2389441 | Msa1307130:intron | 35.0% |
| ! | TAATGCACTCTATCTTTTGC+TGG | - | chr8_4:2389485-2389504 | Msa1307130:intron | 35.0% |
| ATAGGTTAGAATGGGATAGT+AGG | - | chr8_4:2389573-2389592 | Msa1307130:intron | 35.0% | |
| TAGGTTAGAATGGGATAGTA+GGG | - | chr8_4:2389574-2389593 | Msa1307130:intron | 35.0% | |
| CCAAATGTTGCCTAAAATCA+TGG | + | chr8_4:2389639-2389658 | None:intergenic | 35.0% | |
| ! | CCATGATTTTAGGCAACATT+TGG | - | chr8_4:2389636-2389655 | Msa1307130:intron | 35.0% |
| ! | GCAGATATTAAGAGGTCTTT+TGG | - | chr8_4:2389829-2389848 | Msa1307130:intron | 35.0% |
| ! | AGATCATCCAGTGTTACTAT+TGG | + | chr8_4:2389857-2389876 | None:intergenic | 35.0% |
| AATAGTAACACTGGATGATC+TGG | - | chr8_4:2389856-2389875 | Msa1307130:intron | 35.0% | |
| TATGAGATCTGTCAAAAGCA+TGG | - | chr8_4:2389908-2389927 | Msa1307130:intron | 35.0% | |
| ! | ATGAGATCTGTCAAAAGCAT+GGG | - | chr8_4:2389909-2389928 | Msa1307130:intron | 35.0% |
| !! | CAATTTCAAAGGTACCATCA+AGG | + | chr8_4:2390126-2390145 | None:intergenic | 35.0% |
| !! | GTTTACCTGTATACTGGTTT+AGG | + | chr8_4:2390196-2390215 | None:intergenic | 35.0% |
| ATCAGTGTTTACCTGTATAC+TGG | + | chr8_4:2390202-2390221 | None:intergenic | 35.0% | |
| GTTTCCTCTGTAGAATAGTT+TGG | - | chr8_4:2390318-2390337 | Msa1307130:intron | 35.0% | |
| ATAGTTTGGAAATATACGGC+AGG | - | chr8_4:2390332-2390351 | Msa1307130:intron | 35.0% | |
| GATCAATCAAGGATTCTGAT+AGG | - | chr8_4:2390626-2390645 | Msa1307130:intron | 35.0% | |
| !! | CTTTCTTCTAGAATATGCCT+AGG | + | chr8_4:2390655-2390674 | None:intergenic | 35.0% |
| ! | GCATATTCTAGAAGAAAGTG+AGG | - | chr8_4:2390657-2390676 | Msa1307130:intron | 35.0% |
| ! | GTGACTTGAAGCTAGATTTT+AGG | - | chr8_4:2390708-2390727 | Msa1307130:intron | 35.0% |
| !!! | GTATTTTCTAGTTGGTCGTT+AGG | - | chr8_4:2390786-2390805 | Msa1307130:intron | 35.0% |
| GAAAAGGAAAGATAAACCAG+AGG | + | chr8_4:2390858-2390877 | None:intergenic | 35.0% | |
| ! | ATCTTTCCTTTTCTGCTGTA+AGG | - | chr8_4:2390865-2390884 | Msa1307130:intron | 35.0% |
| GTCACAAATATCTTCTTCTG+AGG | + | chr8_4:2391265-2391284 | None:intergenic | 35.0% | |
| ! | TCTCTCATCTAACTTTTCCA+TGG | + | chr8_4:2391532-2391551 | None:intergenic | 35.0% |
| ACTTGGAAGTCAACTCTTTA+AGG | - | chr8_4:2391594-2391613 | Msa1307130:CDS | 35.0% | |
| !! | AGTCAACTCTTTAAGGTTGA+AGG | - | chr8_4:2391601-2391620 | Msa1307130:CDS | 35.0% |
| ! | CTTCTAGAAGCTTCTTGTTG+AGG | + | chr8_4:2388581-2388600 | None:intergenic | 40.0% |
| ! | GTGTTATTGTCATGTTGGTG+TGG | - | chr8_4:2389120-2389139 | Msa1307130:intron | 40.0% |
| TCTATGTAAACTTGCAACCC+AGG | - | chr8_4:2389182-2389201 | Msa1307130:intron | 40.0% | |
| TAAGCAACATTACGGGTTTG+TGG | + | chr8_4:2389415-2389434 | None:intergenic | 40.0% | |
| ! | ATGTTGCTTACCACAAATGG+TGG | - | chr8_4:2389425-2389444 | Msa1307130:intron | 40.0% |
| ! | CTTACCACAAATGGTGGTTT+TGG | - | chr8_4:2389431-2389450 | Msa1307130:intron | 40.0% |
| AACTCCAAAACCACCATTTG+TGG | + | chr8_4:2389438-2389457 | None:intergenic | 40.0% | |
| TCATTCACGACATGGTATCA+TGG | - | chr8_4:2389513-2389532 | Msa1307130:intron | 40.0% | |
| TACAAGCATTTATCAGGCAG+TGG | + | chr8_4:2389799-2389818 | None:intergenic | 40.0% | |
| ! | TTTGGAGCCAATAGTAACAC+TGG | - | chr8_4:2389847-2389866 | Msa1307130:intron | 40.0% |
| ! | CTGTCAAAAGCATGGGAAAA+AGG | - | chr8_4:2389916-2389935 | Msa1307130:intron | 40.0% |
| AGGTTGAGATAAGACAATCG+AGG | - | chr8_4:2389936-2389955 | Msa1307130:intron | 40.0% | |
| GAGATAAGACAATCGAGGAA+TGG | - | chr8_4:2389941-2389960 | Msa1307130:intron | 40.0% | |
| ! | TGTCTATGTTGATGGAGAGT+TGG | - | chr8_4:2389982-2390001 | Msa1307130:CDS | 40.0% |
| !! | TACACGTTCTAGTTCATGCA+CGG | + | chr8_4:2390065-2390084 | None:intergenic | 40.0% |
| TACCATCAAGGCCTTTACAA+GGG | + | chr8_4:2390114-2390133 | None:intergenic | 40.0% | |
| CTTGGCTGCTTCAATTTCAA+AGG | + | chr8_4:2390137-2390156 | None:intergenic | 40.0% | |
| CAATTTGCGGGACGAAAAAA+TGG | - | chr8_4:2390170-2390189 | Msa1307130:CDS | 40.0% | |
| AATGGCCTAAACCAGTATAC+AGG | - | chr8_4:2390188-2390207 | Msa1307130:CDS | 40.0% | |
| CCATTGCAAATTATAGTGGC+AGG | + | chr8_4:2390227-2390246 | None:intergenic | 40.0% | |
| ! | CCTGCCACTATAATTTGCAA+TGG | - | chr8_4:2390224-2390243 | Msa1307130:CDS | 40.0% |
| AAGTGCATCTTCTTGTCATC+TGG | - | chr8_4:2390296-2390315 | Msa1307130:CDS | 40.0% | |
| TCTAGAAGAAAGTGAGGTCA+TGG | - | chr8_4:2390663-2390682 | Msa1307130:intron | 40.0% | |
| CTAGAAGAAAGTGAGGTCAT+GGG | - | chr8_4:2390664-2390683 | Msa1307130:intron | 40.0% | |
| TAGAAGAAAGTGAGGTCATG+GGG | - | chr8_4:2390665-2390684 | Msa1307130:intron | 40.0% | |
| TATTGCGAGTCAAGTAAGTG+AGG | - | chr8_4:2390749-2390768 | Msa1307130:intron | 40.0% | |
| ATTGCGAGTCAAGTAAGTGA+GGG | - | chr8_4:2390750-2390769 | Msa1307130:intron | 40.0% | |
| !! | TAGGAGCATAGCTTTGGATT+AGG | - | chr8_4:2390824-2390843 | Msa1307130:intron | 40.0% |
| AGATCACCTTACAGCAGAAA+AGG | + | chr8_4:2390874-2390893 | None:intergenic | 40.0% | |
| CGTCTTTCTCAATGCTGTTA+CGG | + | chr8_4:2391234-2391253 | None:intergenic | 40.0% | |
| ! | AACAGCATTGAGAAAGACGA+AGG | - | chr8_4:2391235-2391254 | Msa1307130:CDS | 40.0% |
| ATGGTAGACTCCAGATGTTA+GGG | - | chr8_4:2391308-2391327 | Msa1307130:CDS | 40.0% | |
| ! | ACTTTTCATCCCCTAACATC+TGG | + | chr8_4:2391321-2391340 | None:intergenic | 40.0% |
| TGTTAGGGGATGAAAAGTCT+CGG | - | chr8_4:2391323-2391342 | Msa1307130:CDS | 40.0% | |
| ! | GGATTCAGGGTAAGAAGTGT+GGG | + | chr8_4:2388613-2388632 | None:intergenic | 45.0% |
| ! | GTTCGTAGGAAACGGATTCA+GGG | + | chr8_4:2388626-2388645 | None:intergenic | 45.0% |
| !!! | TTCGTTGGTGACGCTGTTTT+GGG | - | chr8_4:2388654-2388673 | Msa1307130:three_prime_UTR | 45.0% |
| !! | GATTCGTGAGTTTGCTGATG+CGG | - | chr8_4:2388842-2388861 | Msa1307130:CDS | 45.0% |
| ! | GCACTCTATCTTTTGCTGGA+TGG | - | chr8_4:2389489-2389508 | Msa1307130:intron | 45.0% |
| TGGATGGTTCATTCACGACA+TGG | - | chr8_4:2389505-2389524 | Msa1307130:intron | 45.0% | |
| !! | ATCTCATAGAGCGTTGTCAC+CGG | + | chr8_4:2389896-2389915 | None:intergenic | 45.0% |
| ! | ATAGACACTGGCAGTGCTTT+TGG | + | chr8_4:2389969-2389988 | None:intergenic | 45.0% |
| ACTGCCAGTGTCTATGTTGA+TGG | - | chr8_4:2389974-2389993 | Msa1307130:CDS | 45.0% | |
| CTCTCCATCAACATAGACAC+TGG | + | chr8_4:2389981-2390000 | None:intergenic | 45.0% | |
| TACTGCTTGCTCTGATCAGA+AGG | - | chr8_4:2390009-2390028 | Msa1307130:CDS | 45.0% | |
| CTGATCAGAAGGACATTGCA+AGG | - | chr8_4:2390020-2390039 | Msa1307130:CDS | 45.0% | |
| TAGTTCATGCACGGCAATCT+TGG | + | chr8_4:2390056-2390075 | None:intergenic | 45.0% | |
| TTTACAAGGGTCGGACATCA+TGG | + | chr8_4:2390101-2390120 | None:intergenic | 45.0% | |
| ATGATGTCCGACCCTTGTAA+AGG | - | chr8_4:2390100-2390119 | Msa1307130:CDS | 45.0% | |
| ATCAAGGCCTTTACAAGGGT+CGG | + | chr8_4:2390110-2390129 | None:intergenic | 45.0% | |
| GTACCATCAAGGCCTTTACA+AGG | + | chr8_4:2390115-2390134 | None:intergenic | 45.0% | |
| AGGATTCTGATAGGACACCT+AGG | - | chr8_4:2390635-2390654 | Msa1307130:intron | 45.0% | |
| AGAAGAAAGTGAGGTCATGG+GGG | - | chr8_4:2390666-2390685 | Msa1307130:intron | 45.0% | |
| TTGCGAGTCAAGTAAGTGAG+GGG | - | chr8_4:2390751-2390770 | Msa1307130:intron | 45.0% | |
| TCGTTAGGAGAGTTTCTCTC+TGG | - | chr8_4:2390801-2390820 | Msa1307130:intron | 45.0% | |
| TAGGAGAGTTTCTCTCTGGT+AGG | - | chr8_4:2390805-2390824 | Msa1307130:intron | 45.0% | |
| !! | CTGTGCAACCTTTTTCACTC+TGG | - | chr8_4:2390903-2390922 | Msa1307130:intron | 45.0% |
| !! | GCAACCTTTTTCACTCTGGT+AGG | - | chr8_4:2390907-2390926 | Msa1307130:intron | 45.0% |
| TGCTCCTACCAGAGTGAAAA+AGG | + | chr8_4:2390914-2390933 | None:intergenic | 45.0% | |
| GCTACTCAGAGAAGTGAACA+AGG | + | chr8_4:2390988-2391007 | None:intergenic | 45.0% | |
| ! | AACATCTGGAGTCTACCATC+TGG | + | chr8_4:2391307-2391326 | None:intergenic | 45.0% |
| GATGGTAGACTCCAGATGTT+AGG | - | chr8_4:2391307-2391326 | Msa1307130:CDS | 45.0% | |
| TGGTAGACTCCAGATGTTAG+GGG | - | chr8_4:2391309-2391328 | Msa1307130:CDS | 45.0% | |
| TTGTAAGGCCCGAATCATCA+AGG | + | chr8_4:2391377-2391396 | None:intergenic | 45.0% | |
| ! | ATGATTCGGGCCTTACAACA+AGG | - | chr8_4:2391379-2391398 | Msa1307130:CDS | 45.0% |
| ! | TGATTCGGGCCTTACAACAA+GGG | - | chr8_4:2391380-2391399 | Msa1307130:CDS | 45.0% |
| ! | CACATACTGCCCTTGTTGTA+AGG | + | chr8_4:2391392-2391411 | None:intergenic | 45.0% |
| GGAAGATTCAATTGCGGCAG+TGG | - | chr8_4:2388533-2388552 | Msa1307130:three_prime_UTR | 50.0% | |
| GCGGCAGTGGAGAAGATAAT+TGG | - | chr8_4:2388546-2388565 | Msa1307130:three_prime_UTR | 50.0% | |
| CGGATTCAGGGTAAGAAGTG+TGG | + | chr8_4:2388614-2388633 | None:intergenic | 50.0% | |
| ! | CGTTCGTAGGAAACGGATTC+AGG | + | chr8_4:2388627-2388646 | None:intergenic | 50.0% |
| CTCGAGACGTTCGTAGGAAA+CGG | + | chr8_4:2388634-2388653 | None:intergenic | 50.0% | |
| AACGAACTCGAGACGTTCGT+AGG | + | chr8_4:2388640-2388659 | None:intergenic | 50.0% | |
| TACGAACGTCTCGAGTTCGT+TGG | - | chr8_4:2388639-2388658 | Msa1307130:three_prime_UTR | 50.0% | |
| !!! | GTTCGTTGGTGACGCTGTTT+TGG | - | chr8_4:2388653-2388672 | Msa1307130:three_prime_UTR | 50.0% |
| ACGTAGGAGAGAGAGTTGAC+CGG | + | chr8_4:2388727-2388746 | None:intergenic | 50.0% | |
| TGCTGACATTAGCAGCACGT+AGG | + | chr8_4:2388743-2388762 | None:intergenic | 50.0% | |
| TGCTGCACGAGCAAGTTTCT+CGG | + | chr8_4:2388766-2388785 | None:intergenic | 50.0% | |
| TGGTGTGGGACACTAAGTGT+CGG | - | chr8_4:2389135-2389154 | Msa1307130:intron | 50.0% | |
| CAGGCAGTGGCAAAGTTGTT+TGG | + | chr8_4:2389786-2389805 | None:intergenic | 50.0% | |
| ! | TCTGGAACGAAAACCGCAAC+CGG | - | chr8_4:2389874-2389893 | Msa1307130:intron | 50.0% |
| GACCCTTGTAAAGGCCTTGA+TGG | - | chr8_4:2390109-2390128 | Msa1307130:CDS | 50.0% | |
| ATGGGGGAGAGAATGGAAGT+TGG | - | chr8_4:2390682-2390701 | Msa1307130:intron | 50.0% | |
| ! | CTCTGGTAGGAGCATAGCTT+TGG | - | chr8_4:2390818-2390837 | Msa1307130:intron | 50.0% |
| ! | TACCATCTGGAGTGGCTATC+TGG | + | chr8_4:2391294-2391313 | None:intergenic | 50.0% |
| GGATGAAAAGTCTCGGCTGA+AGG | - | chr8_4:2391330-2391349 | Msa1307130:CDS | 50.0% | |
| ! | CGTCAACGGAGGTGTAAGAG+AGG | + | chr8_4:2388704-2388723 | None:intergenic | 55.0% |
| TCTTACACCTCCGTTGACGC+CGG | - | chr8_4:2388705-2388724 | Msa1307130:three_prime_UTR | 55.0% | |
| AGAGAGTTGACCGGCGTCAA+CGG | + | chr8_4:2388718-2388737 | None:intergenic | 55.0% | |
| GCTCGTGCAGCAGTCAATCA+TGG | - | chr8_4:2388774-2388793 | Msa1307130:CDS | 55.0% | |
| !! | TAGAGCGTTGTCACCGGTTG+CGG | + | chr8_4:2389890-2389909 | None:intergenic | 55.0% |
| !! | TCGGACATCATGGTAGTGGC+AGG | + | chr8_4:2390091-2390110 | None:intergenic | 55.0% |
| AGGGTCGGACATCATGGTAG+TGG | + | chr8_4:2390095-2390114 | None:intergenic | 55.0% | |
| TGAGGTCATGGGGGAGAGAA+TGG | - | chr8_4:2390675-2390694 | Msa1307130:intron | 55.0% | |
| GGATTAGGACTCTCTGCCTC+TGG | - | chr8_4:2390839-2390858 | Msa1307130:intron | 55.0% | |
| TGGAGTGGCTATCTGGACAG+AGG | + | chr8_4:2391287-2391306 | None:intergenic | 55.0% | |
| GTCCAGATAGCCACTCCAGA+TGG | - | chr8_4:2391289-2391308 | Msa1307130:CDS | 55.0% | |
| CTGGAGTCTACCATCTGGAG+TGG | + | chr8_4:2391302-2391321 | None:intergenic | 55.0% | |
| GAAGGATGCACAGAACTCCG+CGG | - | chr8_4:2391348-2391367 | Msa1307130:CDS | 55.0% | |
| CCGAATCATCAAGGACGCCG+CGG | + | chr8_4:2391368-2391387 | None:intergenic | 60.0% | |
| ! | CCGCGGCGTCCTTGATGATT+CGG | - | chr8_4:2391365-2391384 | Msa1307130:CDS | 60.0% |
| ! | CGCGGCGTCCTTGATGATTC+GGG | - | chr8_4:2391366-2391385 | Msa1307130:CDS | 60.0% |
| GAGTTGACCGGCGTCAACGG+AGG | + | chr8_4:2388715-2388734 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 2388525 | 2391627 | 2388525 | ID=Msa1307130;Name=Msa1307130 |
| chr8_4 | mRNA | 2388525 | 2391627 | 2388525 | ID=Msa1307130-mRNA-1;Parent=Msa1307130;Name=Msa1307130-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.66|1|1|1|3|213|332 |
| chr8_4 | exon | 2388525 | 2388912 | 2388525 | ID=Msa1307130-mRNA-1:exon:783;Parent=Msa1307130-mRNA-1 |
| chr8_4 | exon | 2389943 | 2390319 | 2389943 | ID=Msa1307130-mRNA-1:exon:782;Parent=Msa1307130-mRNA-1 |
| chr8_4 | exon | 2391181 | 2391627 | 2391181 | ID=Msa1307130-mRNA-1:exon:781;Parent=Msa1307130-mRNA-1 |
| chr8_4 | CDS | 2391181 | 2391627 | 2391181 | ID=Msa1307130-mRNA-1:cds;Parent=Msa1307130-mRNA-1 |
| chr8_4 | CDS | 2389943 | 2390319 | 2389943 | ID=Msa1307130-mRNA-1:cds;Parent=Msa1307130-mRNA-1 |
| chr8_4 | CDS | 2388738 | 2388912 | 2388738 | ID=Msa1307130-mRNA-1:cds;Parent=Msa1307130-mRNA-1 |
| chr8_4 | three_prime_UTR | 2388525 | 2388737 | 2388525 | ID=Msa1307130-mRNA-1:three_prime_utr;Parent=Msa1307130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
