AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0242480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242480 MtrunA17_Chr2g0294711 95.952 914 30 1 1 907 1 914 0.0 1836
Msa0242480 MtrunA17_Chr4g0068161 70.684 921 250 4 1 902 1 920 0.0 1326
Msa0242480 MtrunA17_Chr8g0377501 36.364 605 321 18 332 903 395 968 6.20e-91 309
Msa0242480 MtrunA17_Chr8g0377501 48.344 151 76 1 24 172 13 163 1.19e-39 159
Msa0242480 MtrunA17_Chr8g0382191 32.472 619 373 14 292 879 433 1037 3.61e-88 304
Msa0242480 MtrunA17_Chr8g0382191 47.159 176 84 2 25 191 9 184 1.42e-42 168
Msa0242480 MtrunA17_Chr2g0279141 31.547 653 385 15 294 903 395 1028 3.91e-83 289
Msa0242480 MtrunA17_Chr2g0279141 50.279 179 74 4 25 190 13 189 1.63e-39 158
Msa0242480 MtrunA17_Chr4g0050401 31.494 616 373 14 295 879 384 981 7.83e-80 280
Msa0242480 MtrunA17_Chr4g0050401 36.981 265 137 4 25 262 13 274 5.01e-39 157
Msa0242480 MtrunA17_Chr3g0122351 32.997 594 340 16 333 901 375 935 9.59e-73 258
Msa0242480 MtrunA17_Chr3g0122351 54.135 133 59 1 26 156 8 140 1.48e-39 158
Msa0242480 MtrunA17_Chr8g0382181 36.364 132 80 2 67 197 8 136 1.09e-21 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242480 AT3G16940.1 57.531 883 322 11 9 889 7 838 0.0 980
Msa0242480 AT3G16940.3 57.309 862 313 13 31 889 2 811 0.0 946
Msa0242480 AT3G16940.2 56.226 779 291 12 9 784 7 738 0.0 832
Msa0242480 AT5G09410.3 30.178 1014 533 28 25 903 75 1048 2.29e-121 394
Msa0242480 AT2G22300.3 34.416 616 350 16 292 879 331 920 2.04e-88 303
Msa0242480 AT2G22300.3 66.265 83 28 0 71 153 1 83 9.47e-29 124
Msa0242480 AT2G22300.2 34.416 616 350 16 292 879 389 978 6.04e-88 303
Msa0242480 AT2G22300.2 58.571 140 58 0 14 153 2 141 1.40e-45 178
Msa0242480 AT2G22300.1 34.416 616 350 16 292 879 389 978 6.04e-88 303
Msa0242480 AT2G22300.1 58.571 140 58 0 14 153 2 141 1.40e-45 178
Msa0242480 AT5G64220.1 31.553 618 348 13 295 879 423 998 5.06e-83 289
Msa0242480 AT5G64220.1 52.047 171 70 2 25 183 13 183 4.15e-44 173
Msa0242480 AT5G64220.2 31.553 618 348 13 295 879 423 998 5.06e-83 289
Msa0242480 AT5G64220.2 52.047 171 70 2 25 183 13 183 4.15e-44 173
Msa0242480 AT5G09410.4 31.366 593 358 13 349 903 287 868 6.91e-80 278
Msa0242480 AT5G09410.1 31.366 593 358 13 349 903 390 971 6.13e-79 276
Msa0242480 AT5G09410.1 47.458 177 76 2 25 187 16 189 6.06e-42 166
Msa0242480 AT5G09410.2 31.366 593 358 13 349 903 408 989 6.30e-79 277
Msa0242480 AT5G09410.2 47.486 179 77 2 25 189 16 191 3.89e-42 167
Msa0242480 AT1G67310.1 35.121 578 327 15 350 901 444 999 1.28e-70 253
Msa0242480 AT1G67310.1 46.324 136 73 0 21 156 32 167 4.87e-35 144

Find 206 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATAAATTTACATGAATT+TGG 0.133181 2_2:+18666710 None:intergenic
CTAGATTTCCGCGACAAATT+TGG 0.190217 2_2:-18662101 Msa0242480:CDS
GGACTCGCATTTGAATTTAA+TGG 0.227685 2_2:+18664042 None:intergenic
CATGAAGTGTATAAAACTTT+TGG 0.232830 2_2:+18662340 None:intergenic
AAATTAACAACTTGGCTAAT+AGG 0.235743 2_2:+18662560 None:intergenic
AATGACACTCTGTTCTTCTT+TGG 0.245036 2_2:+18666789 None:intergenic
CTATCAGAAGACTTGGATTC+TGG 0.246247 2_2:-18663991 Msa0242480:CDS
CAAACTCAGGGAATGGCTTT+TGG 0.255377 2_2:-18662246 Msa0242480:CDS
TTCTTGCAGGTCCTGGTAAC+TGG 0.267829 2_2:-18662749 Msa0242480:intron
AGTTGGATCTGTCACCAAAT+TGG 0.280566 2_2:+18661398 None:intergenic
GCCACAGACACACATTATAT+TGG 0.281294 2_2:+18662691 None:intergenic
TCTAATAATCACATCAAATA+AGG 0.281850 2_2:+18659906 None:intergenic
GTAAGGTTCTCAGCATTTAC+TGG 0.282291 2_2:+18661216 None:intergenic
CTGGATCATTTGTAGTGGTT+TGG 0.306285 2_2:+18661235 None:intergenic
GGCAATATCGTAAAATTCTA+TGG 0.307153 2_2:-18660777 Msa0242480:CDS
AATTTGTCTTAGGGAGAATA+TGG 0.308955 2_2:-18661451 Msa0242480:intron
GCAGCAGGATCGTGCAAAAT+AGG 0.312540 2_2:+18662524 None:intergenic
ATATTTGTAATTGCTGAGTA+TGG 0.314431 2_2:+18665635 None:intergenic
CAACTTGGCTAATAGGCTTA+TGG 0.317255 2_2:+18662567 None:intergenic
TGATGTTTGGTGGATGTTAC+TGG 0.320329 2_2:-18659962 Msa0242480:three_prime_UTR
ATGAGCTTAATACACTTGAT+TGG 0.321779 2_2:-18663593 Msa0242480:CDS
ATTCTAACTCCGCCAGAGTC+TGG 0.324528 2_2:-18663208 Msa0242480:CDS
CTTCATTGGGCAGCATATAA+TGG 0.325901 2_2:-18662068 Msa0242480:CDS
ATTGCTTTAATATCTTGAAA+TGG 0.328726 2_2:-18660013 Msa0242480:three_prime_UTR
TTTGGAAAGAAATAATGTTT+TGG 0.330089 2_2:+18662358 None:intergenic
AGGTTGGAGTTTACCGATGC+TGG 0.332809 2_2:-18662640 Msa0242480:CDS
GGTGCAGTTGTATCAGAAAT+AGG 0.337957 2_2:+18664021 None:intergenic
TCGATGCAGGCTGCATTTAG+AGG 0.340503 2_2:-18660814 Msa0242480:intron
TCATGCTTAATTATGATGTT+TGG 0.347107 2_2:-18659975 Msa0242480:three_prime_UTR
AATACCCCTACTATACAAAA+TGG 0.347537 2_2:-18663546 Msa0242480:CDS
TCCACCACCAGTGATGAAAA+TGG 0.348372 2_2:+18662968 None:intergenic
ATCTGGCGTGCTTCCTCCTC+TGG 0.351586 2_2:+18661063 None:intergenic
CACGCATACAAGCAGCGTTT+AGG 0.356504 2_2:-18661131 Msa0242480:CDS
TTGGATGGACAGCTCTTCAT+TGG 0.360303 2_2:-18662082 Msa0242480:CDS
TTGCAAAGTCAGAATAGCTT+TGG 0.360951 2_2:-18663079 Msa0242480:CDS
TTACTGAGGTGGCCCCTTCA+TGG 0.361280 2_2:-18662907 Msa0242480:CDS
TCCGAAAAGATGGGCACAAC+TGG 0.365542 2_2:-18665085 Msa0242480:CDS
TTACACAAGTCTAAAGGAAT+TGG 0.372095 2_2:+18660138 None:intergenic
GTTGGATCTGTCACCAAATT+GGG 0.373235 2_2:+18661399 None:intergenic
TTTGATCGTTAACACTTTCT+GGG 0.382927 2_2:+18663161 None:intergenic
TGTTCCTGTAGAAATTGTTC+AGG 0.386765 2_2:-18662660 Msa0242480:CDS
ACGCATACAAGCAGCGTTTA+GGG 0.390302 2_2:-18661130 Msa0242480:CDS
TTTGAATTTAATGGTGTAAC+GGG 0.392292 2_2:+18664051 None:intergenic
TTGCTTTAATATCTTGAAAT+GGG 0.399760 2_2:-18660012 Msa0242480:three_prime_UTR
GCTTTGTTCGAAGATGTTAT+TGG 0.400349 2_2:-18664751 Msa0242480:CDS
GTAATATGAAATACTTGTTC+CGG 0.401537 2_2:+18662926 None:intergenic
TCCAGTACAGATTCCGTTCA+TGG 0.405822 2_2:-18660966 Msa0242480:CDS
TTAGCTCAATTTGCACACTA+TGG 0.408461 2_2:+18660048 None:intergenic
AGAGGACCAAGTGTACTTAA+AGG 0.409759 2_2:-18661193 Msa0242480:CDS
TAATCAACAATCTTCTCTTC+CGG 0.411008 2_2:-18662945 Msa0242480:CDS
TATGAAGTTTGTTGTGTTTG+TGG 0.411847 2_2:-18666533 Msa0242480:five_prime_UTR
TTCAATGACATGAGCTTAGC+TGG 0.412581 2_2:-18661276 Msa0242480:CDS
GCACGATCCTGCTGCTTCAA+TGG 0.413164 2_2:-18662516 Msa0242480:CDS
GAACAAAGCCTGGGTTATCT+TGG 0.413976 2_2:+18664765 None:intergenic
AAGAATCATTCTATAAATCT+TGG 0.420509 2_2:-18663139 Msa0242480:CDS
CGTAAAATTCTATGGTCTGT+TGG 0.422461 2_2:-18660769 Msa0242480:CDS
TGAGCTTAATACACTTGATT+GGG 0.422562 2_2:-18663592 Msa0242480:CDS
AGTACACTTGGTCCTCTGTA+AGG 0.423640 2_2:+18661199 None:intergenic
TTGTGGAGCAAAGCCCAATT+TGG 0.424453 2_2:-18661412 Msa0242480:CDS
TACTGAGGTGGCCCCTTCAT+GGG 0.431821 2_2:-18662906 Msa0242480:CDS
TAACATCTTCGAACAAAGCC+TGG 0.436408 2_2:+18664755 None:intergenic
CTTAGGAACTTCCGAAAAGA+TGG 0.440286 2_2:-18665095 Msa0242480:CDS
AGGATACATTGGCAGCTTAC+CGG 0.443232 2_2:-18661173 Msa0242480:CDS
TGGGTATTGCCGCATTCTCC+TGG 0.445050 2_2:-18662620 Msa0242480:CDS
AGTACAGCCACCAGGGTATT+CGG 0.445573 2_2:+18661374 None:intergenic
TTGAATTTCGTCTTCAAATG+AGG 0.446176 2_2:-18662475 Msa0242480:CDS
CCGTGGGCTTGAGGTGAATC+CGG 0.447115 2_2:-18660698 Msa0242480:CDS
AAGCGCAACAAGAGTATAGC+AGG 0.448397 2_2:-18660546 Msa0242480:CDS
CACACAAATGAATTACACTT+TGG 0.449905 2_2:+18662177 None:intergenic
TCATCTTTCATGTCTTCGTC+CGG 0.452729 2_2:+18660679 None:intergenic
TTCTAACTCCGCCAGAGTCT+GGG 0.453587 2_2:-18663207 Msa0242480:CDS
AATTCATTTGTGTGCAATGT+TGG 0.456072 2_2:-18662168 Msa0242480:CDS
TTAGTCTCTTTCAGTGCAGT+AGG 0.457802 2_2:+18662392 None:intergenic
CTTGTTGGTTCAGAGATACA+TGG 0.458740 2_2:-18666446 Msa0242480:CDS
AACTTCACAGGACAGCTTGT+TGG 0.464852 2_2:-18666461 Msa0242480:CDS
CCAGGGTTTCGCCGACATCC+AGG 0.464964 2_2:+18665700 None:intergenic
GTTACATTACACAAGTCTAA+AGG 0.465146 2_2:+18660132 None:intergenic
GTTTCTCCACATGCGACGTC+AGG 0.466290 2_2:-18660929 Msa0242480:CDS
AGAACATGGTGTGTAAGATA+TGG 0.466489 2_2:+18663039 None:intergenic
GATATTAAAGCAATTTGAAA+GGG 0.467340 2_2:+18660022 None:intergenic
TTATCTTTCAGAAAAGTGTC+TGG 0.473332 2_2:-18661307 Msa0242480:CDS
GTGCAATGTTGGGATATACT+TGG 0.476598 2_2:-18662157 Msa0242480:CDS
TATTTGACCGCAAGATGCTT+AGG 0.477000 2_2:-18665112 Msa0242480:CDS
TCCATGAACGGAATCTGTAC+TGG 0.477269 2_2:+18660965 None:intergenic
CTGCTGCCTCAGCTGTTGTC+CGG 0.478718 2_2:+18661154 None:intergenic
TGCTTAATTATGATGTTTGG+TGG 0.481641 2_2:-18659972 Msa0242480:three_prime_UTR
CAATGGAGGAGACATACAAC+TGG 0.483109 2_2:-18662499 Msa0242480:CDS
CCACCAGGGTATTCGGTAGT+TGG 0.483552 2_2:+18661381 None:intergenic
CGCTTTCTTAGAACGGAACA+TGG 0.484609 2_2:+18660564 None:intergenic
AAATAGAGATTCACGAATCC+AGG 0.491400 2_2:+18662602 None:intergenic
CCTGTAGAAATTGTTCAGGT+TGG 0.492274 2_2:-18662656 Msa0242480:CDS
AATATGTAACTGAAATGATA+AGG 0.494690 2_2:-18659929 Msa0242480:three_prime_UTR
GAGAAAACATCAAGGGTCTT+CGG 0.497702 2_2:+18662428 None:intergenic
TCCTCAGAAATTCCTACGTA+TGG 0.499293 2_2:-18663232 Msa0242480:CDS
GAAGAGGACTTCTTTAAGAC+TGG 0.502934 2_2:-18660637 Msa0242480:CDS
TTACATGAATTTGGAGAAGA+GGG 0.504725 2_2:+18666719 None:intergenic
GGTTGGAGTTTACCGATGCT+GGG 0.508816 2_2:-18662639 Msa0242480:CDS
CCTGGATGTCGGCGAAACCC+TGG 0.509259 2_2:-18665700 Msa0242480:CDS
AAGCAATGGCAGCCGCTGCT+CGG 0.509734 2_2:-18660990 Msa0242480:CDS
TGGATGGACAGCTCTTCATT+GGG 0.509818 2_2:-18662081 Msa0242480:CDS
ATTCATTTGTGTGCAATGTT+GGG 0.510037 2_2:-18662167 Msa0242480:CDS
GTCTCCTCCATTGAAGCAGC+AGG 0.510767 2_2:+18662509 None:intergenic
AAAAGGTTTCCGTGGGCTTG+AGG 0.516403 2_2:-18660707 Msa0242480:CDS
ACATTACTGCTCCCAGACTC+TGG 0.516774 2_2:+18663196 None:intergenic
ACCATTCGTATAAGCACTGC+TGG 0.516953 2_2:+18663966 None:intergenic
ACATTATATTGGACTTTGCA+AGG 0.517791 2_2:+18662702 None:intergenic
ATGGATTCTATCAGAAGACT+TGG 0.519452 2_2:-18663998 Msa0242480:CDS
AATCTCTATTTGAGCTTCGA+TGG 0.522019 2_2:-18662590 Msa0242480:CDS
AGATATTAAAGCAATTTGAA+AGG 0.522592 2_2:+18660021 None:intergenic
AGACATGAAAGATGAGAAGC+AGG 0.524871 2_2:-18660671 Msa0242480:CDS
ATTTGAATTTAATGGTGTAA+CGG 0.525522 2_2:+18664050 None:intergenic
GTTGCTACGTTGTTGTCTTG+TGG 0.526879 2_2:-18661429 Msa0242480:CDS
CCAACCTGAACAATTTCTAC+AGG 0.529057 2_2:+18662656 None:intergenic
GATATTCAAAATTAACAACT+TGG 0.530058 2_2:+18662552 None:intergenic
TCAGCAGCAGTACAGCCACC+AGG 0.531177 2_2:+18661366 None:intergenic
AGGACTTCTTTAAGACTGGT+AGG 0.538366 2_2:-18660633 Msa0242480:CDS
TTTACATGAATTTGGAGAAG+AGG 0.539840 2_2:+18666718 None:intergenic
CTTGTTGCGCTTTCTTAGAA+CGG 0.539892 2_2:+18660557 None:intergenic
CATGGATTCCACACCTTGAG+AGG 0.540142 2_2:-18666428 Msa0242480:intron
ACATGATAAGTTCCTATGAA+AGG 0.542367 2_2:-18660181 Msa0242480:exon
ACATTGTCAAAGCTGCCATT+CGG 0.542413 2_2:+18663399 None:intergenic
GCTGATCTTGCTTATATGAA+AGG 0.543937 2_2:-18661348 Msa0242480:CDS
TTTCAACGCAATTTCGAACA+AGG 0.546511 2_2:+18662271 None:intergenic
ATGCATTGTACTACCTCTCA+AGG 0.548905 2_2:+18666415 None:intergenic
AGTATGGCGTGAATCTCATT+CGG 0.549858 2_2:+18665651 None:intergenic
AAGTCTTCTGATAGAATCCA+TGG 0.551451 2_2:+18664000 None:intergenic
TTGAGAAAGTAATCCTGCGT+TGG 0.551923 2_2:-18660741 Msa0242480:CDS
TCTTGTCTCAAAGTTGCGAA+AGG 0.552815 2_2:+18661014 None:intergenic
AATCATTCTATAAATCTTGG+TGG 0.555184 2_2:-18663136 Msa0242480:CDS
TACGTAGGAATTTCTGAGGA+AGG 0.556506 2_2:+18663235 None:intergenic
GCAGGAAAGCGATGTAGAAG+AGG 0.559635 2_2:-18660653 Msa0242480:CDS
ATGGCACAAAACAACTTCAC+AGG 0.561027 2_2:-18666473 Msa0242480:CDS
GAGTCTGGAGCACATAGTCC+TGG 0.563482 2_2:-18664530 Msa0242480:CDS
CAGTGGAAGAAACCCATGAA+GGG 0.564862 2_2:+18662894 None:intergenic
AGAGTATAGCAGGATGAAGA+TGG 0.564933 2_2:-18660536 Msa0242480:CDS
AACATCTTCGAACAAAGCCT+GGG 0.568972 2_2:+18664756 None:intergenic
GTGTTTCACGATAATGAACC+AGG 0.574522 2_2:+18664512 None:intergenic
ACTAAAATTGCGATATCAGT+CGG 0.575281 2_2:-18661100 Msa0242480:CDS
GTCAGAATAGCTTTGGAACG+TGG 0.576268 2_2:-18663072 Msa0242480:CDS
TTCATTGACTAAAATGTCAA+CGG 0.578344 2_2:+18663105 None:intergenic
GCAAATTCAATGGCTTGACA+TGG 0.579151 2_2:+18665604 None:intergenic
ACCAGCAGTGCTTATACGAA+TGG 0.580709 2_2:-18663967 Msa0242480:intron
TTAAAGAGAAAAGGTTTCCG+TGG 0.583364 2_2:-18660715 Msa0242480:CDS
TAAAGAGAAAAGGTTTCCGT+GGG 0.583584 2_2:-18660714 Msa0242480:CDS
ATGTATCCTTTAAGTACACT+TGG 0.583656 2_2:+18661187 None:intergenic
AGTGTACTTAAAGGATACAT+TGG 0.584610 2_2:-18661184 Msa0242480:CDS
GCTTATATGAAAGGATATGA+CGG 0.585929 2_2:-18661339 Msa0242480:CDS
ATTTCCGCGACAAATTTGGA+TGG 0.585964 2_2:-18662097 Msa0242480:CDS
AGTATTTCATATTACTGAGG+TGG 0.586077 2_2:-18662918 Msa0242480:CDS
CTTCACTAGAGAAAACATCA+AGG 0.586742 2_2:+18662420 None:intergenic
ACTTGATTGGGATGAACTAG+TGG 0.587256 2_2:-18663580 Msa0242480:CDS
TAATAGCCTGACGTCGCATG+TGG 0.587369 2_2:+18660923 None:intergenic
TCAATTTATCAGTCCAGAGG+AGG 0.588337 2_2:-18661076 Msa0242480:CDS
AGAAGAGGGTCTGTTCTGAA+TGG 0.588902 2_2:+18666733 None:intergenic
TCAGTGGAAGAAACCCATGA+AGG 0.594547 2_2:+18662893 None:intergenic
AGAGAAAATATCCAGTTACC+AGG 0.595253 2_2:+18662738 None:intergenic
CTCTACGCAACTTCCATGAA+CGG 0.595420 2_2:+18660953 None:intergenic
CGATCCTGCTGCTTCAATGG+AGG 0.599750 2_2:-18662513 Msa0242480:CDS
ACTTGTCATAGGTGTGATGA+TGG 0.601222 2_2:-18666492 Msa0242480:exon
CAGCAGCAGTACAGCCACCA+GGG 0.604424 2_2:+18661367 None:intergenic
GGAAGTTCCTAAGCATCTTG+CGG 0.606340 2_2:+18665105 None:intergenic
TTAGAGGCTTTCAAGTGCGT+AGG 0.607046 2_2:-18660798 Msa0242480:CDS
ATTTACTGGATCATTTGTAG+TGG 0.608395 2_2:+18661230 None:intergenic
TTCTCTTTAAAAGCCAACGC+AGG 0.610360 2_2:+18660728 None:intergenic
TTGTACTACCTCTCAAGGTG+TGG 0.614235 2_2:+18666420 None:intergenic
TGCAATGTTGGGATATACTT+GGG 0.615912 2_2:-18662156 Msa0242480:CDS
TTAGGAACTTCCGAAAAGAT+GGG 0.618001 2_2:-18665094 Msa0242480:CDS
AGCTTACCGGACAACAGCTG+AGG 0.620623 2_2:-18661160 Msa0242480:CDS
CTAAATCAAAGCTTACCGAA+TGG 0.621517 2_2:-18663414 Msa0242480:CDS
TTCACGAATCCAGGAGAATG+CGG 0.627682 2_2:+18662611 None:intergenic
TTCTTCCACTGAGAAAACAA+AGG 0.631295 2_2:-18662882 Msa0242480:intron
AGCTTAGCTGGAAATATCAG+TGG 0.631881 2_2:-18661264 Msa0242480:CDS
AGAACTCATCAATTCTGATG+TGG 0.633421 2_2:-18660221 Msa0242480:CDS
CTTTGAGACAAGAAAAGCAA+TGG 0.633518 2_2:-18661004 Msa0242480:CDS
TATGACTCAGACCTGGATGT+CGG 0.634285 2_2:-18665711 Msa0242480:intron
GATGGCACATAGTCAAGCAA+AGG 0.635449 2_2:-18660518 Msa0242480:intron
TTCACTAGAGAAAACATCAA+GGG 0.636868 2_2:+18662421 None:intergenic
CCGGATTCACCTCAAGCCCA+CGG 0.642313 2_2:+18660698 None:intergenic
TTTCTGATACAACTGCACCA+TGG 0.644660 2_2:-18664017 Msa0242480:CDS
AATGCGGCAATACCCAGCAT+CGG 0.652701 2_2:+18662627 None:intergenic
AGTGGAAGAAACCCATGAAG+GGG 0.653131 2_2:+18662895 None:intergenic
TTACACACCATGTTCTGTAG+AGG 0.653988 2_2:-18663032 Msa0242480:CDS
ACCCCTACTATACAAAATGG+AGG 0.655140 2_2:-18663543 Msa0242480:intron
AATGGATCATGAACAGACGA+AGG 0.658327 2_2:+18662986 None:intergenic
TAAGACTGGTAGGAAACAAG+CGG 0.659485 2_2:-18660623 Msa0242480:CDS
ACCATACGTAGGAATTTCTG+AGG 0.659507 2_2:+18663231 None:intergenic
GGTTCAATTTATCAGTCCAG+AGG 0.660144 2_2:-18661079 Msa0242480:CDS
CTGTCCATCCAAATTTGTCG+CGG 0.660885 2_2:+18662093 None:intergenic
ACAAGTATTTCATATTACTG+AGG 0.664709 2_2:-18662921 Msa0242480:CDS
GGCCGTGTGCATAATATACG+TGG 0.667740 2_2:+18664786 None:intergenic
TCATTATCGTGAAACACAAG+AGG 0.669255 2_2:-18664506 Msa0242480:intron
TCCAATATAATGTGTGTCTG+TGG 0.683099 2_2:-18662692 Msa0242480:CDS
GTTGACGCCTCTACAGAACA+TGG 0.690824 2_2:+18663025 None:intergenic
GATCCAACTACCGAATACCC+TGG 0.692497 2_2:-18661384 Msa0242480:CDS
TTACTGCTCCCAGACTCTGG+CGG 0.695060 2_2:+18663199 None:intergenic
GGATGTCGGCGAAACCCTGG+AGG 0.700592 2_2:-18665697 Msa0242480:CDS
ATCCACGTATATTATGCACA+CGG 0.702464 2_2:-18664788 Msa0242480:CDS
TCTGTACTGGATCCGAGCAG+CGG 0.708022 2_2:+18660978 None:intergenic
GCACACGGCCAAGATAACCC+AGG 0.722098 2_2:-18664773 Msa0242480:CDS
AGAACGCGTTGAGAGATCTG+TGG 0.723214 2_2:-18660599 Msa0242480:CDS
ACTACTGAGTATGATGCACA+AGG 0.723260 2_2:-18662200 Msa0242480:CDS
GGAGTTAGAATACCATACGT+AGG 0.723293 2_2:+18663220 None:intergenic
AATGGAGGAGACATACAACT+GGG 0.727869 2_2:-18662498 Msa0242480:CDS
TGATTTAGTTGATAGTAACG+CGG 0.738031 2_2:+18663429 None:intergenic
AAATGCTGAGAACCTTACAG+AGG 0.749608 2_2:-18661211 Msa0242480:CDS
CCAACTACCGAATACCCTGG+TGG 0.762091 2_2:-18661381 Msa0242480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATGAAAAATCAAAA+GGG + chr2_2:18659967-18659986 None:intergenic 10.0%
!! AATAAAAATGAAAAATCAAA+AGG + chr2_2:18659968-18659987 None:intergenic 10.0%
!! ATCATATTATATAGTATATA+TGG + chr2_2:18661108-18661127 None:intergenic 10.0%
!! ATTTATTTATTGAAGAAAAT+TGG - chr2_2:18662508-18662527 Msa0242480:CDS 10.0%
!! TTTATTTATTGAAGAAAATT+GGG - chr2_2:18662509-18662528 Msa0242480:CDS 10.0%
!! TATATCATTATAATCAATTA+AGG + chr2_2:18662842-18662861 None:intergenic 10.0%
!! ATGATAAATTTACATGAATT+TGG + chr2_2:18659923-18659942 None:intergenic 15.0%
!! TAAAAATGAAAAATCAAAAG+GGG + chr2_2:18659966-18659985 None:intergenic 15.0%
!!! AATTTTTTTTTTTTTTGTGG+AGG - chr2_2:18660324-18660343 Msa0242480:intron 15.0%
!!! ATTTTTTTTTTTTTTGTGGA+GGG - chr2_2:18660325-18660344 Msa0242480:intron 15.0%
!!! TATTTTGATGTTTAATTGTT+TGG - chr2_2:18660351-18660370 Msa0242480:intron 15.0%
!! AAGATTTCTAATTAAACAAA+AGG + chr2_2:18660581-18660600 None:intergenic 15.0%
!! TTGTTTAATTAGAAATCTTT+CGG - chr2_2:18660582-18660601 Msa0242480:CDS 15.0%
!! ATTTCAAATATATCGAAAAA+GGG + chr2_2:18660712-18660731 None:intergenic 15.0%
!! TATTTCAAATATATCGAAAA+AGG + chr2_2:18660713-18660732 None:intergenic 15.0%
!! AGAAAAACAATAAAAACAAT+CGG + chr2_2:18662075-18662094 None:intergenic 15.0%
!!! TATACGTTAAATTTAACTTT+TGG - chr2_2:18663167-18663186 Msa0242480:CDS 15.0%
!! CAATTATAATTGCAAAATAA+CGG + chr2_2:18663842-18663861 None:intergenic 15.0%
!! TAGTTATATATGTATCTTTA+GGG + chr2_2:18665029-18665048 None:intergenic 15.0%
!! ATAGTTATATATGTATCTTT+AGG + chr2_2:18665030-18665049 None:intergenic 15.0%
!! AAATTAATCACATATTAGAA+CGG + chr2_2:18666211-18666230 None:intergenic 15.0%
!! AAAAAAATTAAACCAAACCA+AGG + chr2_2:18660313-18660332 None:intergenic 20.0%
!!! TATAATTTTCAATGCAACTT+AGG - chr2_2:18660419-18660438 Msa0242480:intron 20.0%
!!! TTTCGATATATTTGAAATAC+TGG - chr2_2:18660714-18660733 Msa0242480:CDS 20.0%
!! ACATCATATAATTCACAATA+AGG + chr2_2:18661435-18661454 None:intergenic 20.0%
!! TATAATGTTATGTGTAAAAC+AGG - chr2_2:18661481-18661500 Msa0242480:intron 20.0%
!!! TTTTGTTTATTTGATGTTGA+GGG - chr2_2:18661644-18661663 Msa0242480:intron 20.0%
!! AATCAAATACAACATAACTA+TGG + chr2_2:18661719-18661738 None:intergenic 20.0%
!!! ATTTATGATCTATGTTTTTG+TGG - chr2_2:18661981-18662000 Msa0242480:intron 20.0%
!!! GTTTTTATTGTTTTTCTTTC+AGG - chr2_2:18662078-18662097 Msa0242480:CDS 20.0%
!! AAAACCAAAAAAAATACTTG+TGG + chr2_2:18662246-18662265 None:intergenic 20.0%
!! CAATAAATAAATAGATCACA+TGG + chr2_2:18662500-18662519 None:intergenic 20.0%
!! ATTTGAATTTAATGGTGTAA+CGG + chr2_2:18662583-18662602 None:intergenic 20.0%
!! TCATTATAATCAATTAAGGT+TGG + chr2_2:18662838-18662857 None:intergenic 20.0%
!! AACAATATATCATAACCAAT+AGG + chr2_2:18662896-18662915 None:intergenic 20.0%
!! ATTTAACGTATAAAATTGCA+AGG + chr2_2:18663159-18663178 None:intergenic 20.0%
!!! TCTATAGAGTTTTTATAAAC+AGG - chr2_2:18663361-18663380 Msa0242480:intron 20.0%
!! AAGAATCATTCTATAAATCT+TGG - chr2_2:18663491-18663510 Msa0242480:intron 20.0%
!! CAATTAGAAATATGAGAAAA+AGG + chr2_2:18663783-18663802 None:intergenic 20.0%
!! CAATTATAATTGAACATTCA+TGG - chr2_2:18663850-18663869 Msa0242480:intron 20.0%
!! GATATTCAAAATTAACAACT+TGG + chr2_2:18664081-18664100 None:intergenic 20.0%
!!! TTTGGAAAGAAATAATGTTT+TGG + chr2_2:18664275-18664294 None:intergenic 20.0%
!! GACAAATTTCATATAGTTTA+AGG + chr2_2:18664743-18664762 None:intergenic 20.0%
!!! TTTGTTTGAAATTTGTCTTA+GGG - chr2_2:18665170-18665189 Msa0242480:intron 20.0%
!! AACAAAAAATAACGACAATT+TGG - chr2_2:18666175-18666194 Msa0242480:intron 20.0%
!! GTTAATACAATTCAAATACA+TGG + chr2_2:18666304-18666323 None:intergenic 20.0%
!!! TATTATGATTTGATTTGACA+TGG - chr2_2:18666339-18666358 Msa0242480:intron 20.0%
!!! TATGAAAGGTTTATGTTTTT+GGG - chr2_2:18666463-18666482 Msa0242480:CDS 20.0%
!!! TTTTCTTTCTTTCTTTGTAT+AGG - chr2_2:18666534-18666553 Msa0242480:five_prime_UTR 20.0%
!! GATATTAAAGCAATTTGAAA+GGG + chr2_2:18666611-18666630 None:intergenic 20.0%
!! AGATATTAAAGCAATTTGAA+AGG + chr2_2:18666612-18666631 None:intergenic 20.0%
!! ATTGCTTTAATATCTTGAAA+TGG - chr2_2:18666617-18666636 Msa0242480:intron 20.0%
!! TTGCTTTAATATCTTGAAAT+GGG - chr2_2:18666618-18666637 Msa0242480:intron 20.0%
!! AATATGTAACTGAAATGATA+AGG - chr2_2:18666701-18666720 Msa0242480:intron 20.0%
!! TCTAATAATCACATCAAATA+AGG + chr2_2:18666727-18666746 None:intergenic 20.0%
!!! TTTTTTTTTTGTCGTGTAGT+TGG - chr2_2:18660037-18660056 Msa0242480:three_prime_UTR 25.0%
! GTTTCTATTAATGTTGTTGT+AGG - chr2_2:18660073-18660092 Msa0242480:three_prime_UTR 25.0%
!! TATTCTTATTTATGCTACCT+TGG - chr2_2:18660293-18660312 Msa0242480:intron 25.0%
! TGATGTTTAATTGTTTGGTA+TGG - chr2_2:18660356-18660375 Msa0242480:intron 25.0%
!!! AGTGAAAAAAGAAGTTTTGT+CGG - chr2_2:18660442-18660461 Msa0242480:intron 25.0%
! TAAAAGTTGTCAAAGATTTG+AGG + chr2_2:18660492-18660511 None:intergenic 25.0%
!!! ATGCTTTTTTTCTTTGTAAC+CGG + chr2_2:18660639-18660658 None:intergenic 25.0%
! ATATTTGTAATTGCTGAGTA+TGG + chr2_2:18660998-18661017 None:intergenic 25.0%
!! TCTGATAGCAATATACTTTT+GGG + chr2_2:18661051-18661070 None:intergenic 25.0%
!! TTCTGATAGCAATATACTTT+TGG + chr2_2:18661052-18661071 None:intergenic 25.0%
! ATGCATTGTTCAACTATATA+TGG - chr2_2:18661298-18661317 Msa0242480:CDS 25.0%
! TGAATTATATGATGTCAAAC+AGG - chr2_2:18661440-18661459 Msa0242480:CDS 25.0%
! AACTGGAAAAAGAAAAATGA+CGG - chr2_2:18661562-18661581 Msa0242480:intron 25.0%
!!! GTTTTGTTTATTTGATGTTG+AGG - chr2_2:18661643-18661662 Msa0242480:intron 25.0%
! AACATGCATACACAATATAT+AGG + chr2_2:18661958-18661977 None:intergenic 25.0%
!! CATATATGTCTTTATTTGTC+TGG + chr2_2:18662200-18662219 None:intergenic 25.0%
!!! GTATTTTTTTTGGTTTTCTG+AGG - chr2_2:18662249-18662268 Msa0242480:CDS 25.0%
!!! GCTTGTTTTAGAAACAAATT+TGG + chr2_2:18662346-18662365 None:intergenic 25.0%
! AATAAATAGATCACATGGTA+AGG + chr2_2:18662495-18662514 None:intergenic 25.0%
! TTTGAATTTAATGGTGTAAC+GGG + chr2_2:18662582-18662601 None:intergenic 25.0%
!! ATATAGTGTTGTTACACATT+AGG - chr2_2:18662857-18662876 Msa0242480:intron 25.0%
!! GTAATTGTTTCTTCTTTATC+TGG - chr2_2:18663109-18663128 Msa0242480:CDS 25.0%
! TAAAGAACACAAATGAAAGA+AGG + chr2_2:18663266-18663285 None:intergenic 25.0%
! AATCATTCTATAAATCTTGG+TGG - chr2_2:18663494-18663513 Msa0242480:intron 25.0%
!! TTCATTGACTAAAATGTCAA+CGG + chr2_2:18663528-18663547 None:intergenic 25.0%
! GTAATATGAAATACTTGTTC+CGG + chr2_2:18663707-18663726 None:intergenic 25.0%
! ACAAGTATTTCATATTACTG+AGG - chr2_2:18663709-18663728 Msa0242480:intron 25.0%
! GAAATATGAGAAAAAGGAAA+AGG + chr2_2:18663777-18663796 None:intergenic 25.0%
! AAATTAACAACTTGGCTAAT+AGG + chr2_2:18664073-18664092 None:intergenic 25.0%
!! CATGAAGTGTATAAAACTTT+TGG + chr2_2:18664293-18664312 None:intergenic 25.0%
!! GATGGATTTCATATAGTTTA+TGG + chr2_2:18664774-18664793 None:intergenic 25.0%
!! TCCATCAAATTATTCCATTT+TGG - chr2_2:18664788-18664807 Msa0242480:CDS 25.0%
! ACCAAAATGGAATAATTTGA+TGG + chr2_2:18664792-18664811 None:intergenic 25.0%
! AATTGAGTAAACCATCAATT+TGG + chr2_2:18664960-18664979 None:intergenic 25.0%
!! GTTTGTTTGAAATTTGTCTT+AGG - chr2_2:18665169-18665188 Msa0242480:intron 25.0%
! CAACTTAAAGAGAAAAATTC+AGG + chr2_2:18665773-18665792 None:intergenic 25.0%
!! TTAAGTTGTTAATGCTTGAT+TGG - chr2_2:18665785-18665804 Msa0242480:intron 25.0%
! AAAAATAACGACAATTTGGA+TGG - chr2_2:18666179-18666198 Msa0242480:intron 25.0%
! GGTTAATTGCATTTAATAGA+CGG + chr2_2:18666283-18666302 None:intergenic 25.0%
! ATTTGACATGGTTATTAACT+TGG - chr2_2:18666351-18666370 Msa0242480:intron 25.0%
! CAAAAACATAAACCTTTCAT+AGG + chr2_2:18666464-18666483 None:intergenic 25.0%
!! CTATGAAAGGTTTATGTTTT+TGG - chr2_2:18666462-18666481 Msa0242480:CDS 25.0%
! TCATGCTTAATTATGATGTT+TGG - chr2_2:18666655-18666674 Msa0242480:intron 25.0%
TTACATGAATTTGGAGAAGA+GGG + chr2_2:18659914-18659933 None:intergenic 30.0%
TTTACATGAATTTGGAGAAG+AGG + chr2_2:18659915-18659934 None:intergenic 30.0%
!! TATGAAGTTTGTTGTGTTTG+TGG - chr2_2:18660097-18660116 Msa0242480:three_prime_UTR 30.0%
AGAAGAGAAAAACTTGTCAT+AGG - chr2_2:18660127-18660146 Msa0242480:three_prime_UTR 30.0%
TTATTTATGCTACCTTGGTT+TGG - chr2_2:18660298-18660317 Msa0242480:intron 30.0%
GATAGATGTTAGTAAGTTAG+TGG - chr2_2:18660522-18660541 Msa0242480:CDS 30.0%
! ATACTTTTGGGCAAATTCAA+TGG + chr2_2:18661039-18661058 None:intergenic 30.0%
AAGCTTCAACAAGAACTAAA+GGG + chr2_2:18661221-18661240 None:intergenic 30.0%
AAAGCTTCAACAAGAACTAA+AGG + chr2_2:18661222-18661241 None:intergenic 30.0%
TCCTATGTAGATCTATTCAA+TGG - chr2_2:18661356-18661375 Msa0242480:CDS 30.0%
TCCATTGAATAGATCTACAT+AGG + chr2_2:18661360-18661379 None:intergenic 30.0%
TTGCATCAAAAAGAGAACTT+CGG - chr2_2:18661400-18661419 Msa0242480:CDS 30.0%
AATGTTATGTGTAAAACAGG+TGG - chr2_2:18661484-18661503 Msa0242480:intron 30.0%
ACTGGAAAAAGAAAAATGAC+GGG - chr2_2:18661563-18661582 Msa0242480:intron 30.0%
ATTACCAACCTGATTGATAA+GGG + chr2_2:18661813-18661832 None:intergenic 30.0%
! TATGTTTAGCTTAACCCTTA+AGG - chr2_2:18661924-18661943 Msa0242480:intron 30.0%
TATAGGAATTGAGACCTTAA+GGG + chr2_2:18661941-18661960 None:intergenic 30.0%
ATATAGGAATTGAGACCTTA+AGG + chr2_2:18661942-18661961 None:intergenic 30.0%
!! GTTCAATTTTTAAGAGGCAA+AGG + chr2_2:18662173-18662192 None:intergenic 30.0%
!! GGTGAAGTTCAATTTTTAAG+AGG + chr2_2:18662179-18662198 None:intergenic 30.0%
!!! GACTCCACAAGTATTTTTTT+TGG - chr2_2:18662239-18662258 Msa0242480:CDS 30.0%
TTTACCGATGAATGTGTTTA+AGG - chr2_2:18662289-18662308 Msa0242480:CDS 30.0%
TTACCGATGAATGTGTTTAA+GGG - chr2_2:18662290-18662309 Msa0242480:CDS 30.0%
ATACCCTTAAACACATTCAT+CGG + chr2_2:18662296-18662315 None:intergenic 30.0%
! AACGAAGTTTTTCTAGACTT+GGG + chr2_2:18662319-18662338 None:intergenic 30.0%
!! TATCCACTTTTAGATTGTCA+TGG - chr2_2:18662371-18662390 Msa0242480:CDS 30.0%
!! ATCCACTTTTAGATTGTCAT+GGG - chr2_2:18662372-18662391 Msa0242480:CDS 30.0%
ACATATCAATCATGAATCTC+GGG + chr2_2:18662462-18662481 None:intergenic 30.0%
CACATATCAATCATGAATCT+CGG + chr2_2:18662463-18662482 None:intergenic 30.0%
GGATAATACTATCAACCTAT+TGG - chr2_2:18662878-18662897 Msa0242480:intron 30.0%
GTTGTTGTCATAGATATTGT+TGG - chr2_2:18662913-18662932 Msa0242480:CDS 30.0%
GGAATGAAAATAGGTATCTA+CGG + chr2_2:18662952-18662971 None:intergenic 30.0%
ACAGTAAAGGGAATGAAAAT+AGG + chr2_2:18662961-18662980 None:intergenic 30.0%
ATGAGCTTAATACACTTGAT+TGG - chr2_2:18663037-18663056 Msa0242480:CDS 30.0%
TGAGCTTAATACACTTGATT+GGG - chr2_2:18663038-18663057 Msa0242480:CDS 30.0%
AATACCCCTACTATACAAAA+TGG - chr2_2:18663084-18663103 Msa0242480:CDS 30.0%
! TACCTCCATTTTGTATAGTA+GGG + chr2_2:18663092-18663111 None:intergenic 30.0%
! TTACCTCCATTTTGTATAGT+AGG + chr2_2:18663093-18663112 None:intergenic 30.0%
!! CGTTAAATTTAACTTTTGGC+AGG - chr2_2:18663171-18663190 Msa0242480:CDS 30.0%
!! TGATTTAGTTGATAGTAACG+CGG + chr2_2:18663204-18663223 None:intergenic 30.0%
TATCACTAGAAGACAGAAAA+AGG + chr2_2:18663309-18663328 None:intergenic 30.0%
! AGTTTTTATAAACAGGTTGC+TGG - chr2_2:18663368-18663387 Msa0242480:intron 30.0%
TTTGATCGTTAACACTTTCT+GGG + chr2_2:18663472-18663491 None:intergenic 30.0%
! TTTTGATCGTTAACACTTTC+TGG + chr2_2:18663473-18663492 None:intergenic 30.0%
!! GTTGACATTTTAGTCAATGA+AGG - chr2_2:18663527-18663546 Msa0242480:intron 30.0%
TAATCAACAATCTTCTCTTC+CGG - chr2_2:18663685-18663704 Msa0242480:intron 30.0%
AGTATTTCATATTACTGAGG+TGG - chr2_2:18663712-18663731 Msa0242480:intron 30.0%
ACATTATATTGGACTTTGCA+AGG + chr2_2:18663931-18663950 None:intergenic 30.0%
TTGAATTTCGTCTTCAAATG+AGG - chr2_2:18664155-18664174 Msa0242480:intron 30.0%
TTCACTAGAGAAAACATCAA+GGG + chr2_2:18664212-18664231 None:intergenic 30.0%
!! GGAAAGAAATAATGTTTTGG+AGG + chr2_2:18664272-18664291 None:intergenic 30.0%
!!! CTTTTGGAACGTATTGTTTT+AGG - chr2_2:18664400-18664419 Msa0242480:intron 30.0%
CACACAAATGAATTACACTT+TGG + chr2_2:18664456-18664475 None:intergenic 30.0%
AATTCATTTGTGTGCAATGT+TGG - chr2_2:18664462-18664481 Msa0242480:intron 30.0%
ATTCATTTGTGTGCAATGTT+GGG - chr2_2:18664463-18664482 Msa0242480:intron 30.0%
AATCTGTTTGTTCAAACAAC+TGG + chr2_2:18664609-18664628 None:intergenic 30.0%
CTTGTTAGTATACACCAAAA+TGG + chr2_2:18664805-18664824 None:intergenic 30.0%
GTATACTAACAAGAGATACT+AGG - chr2_2:18664812-18664831 Msa0242480:intron 30.0%
TAGTTTAGAGACTAACTTGA+CGG - chr2_2:18664857-18664876 Msa0242480:intron 30.0%
ATATAGTTTAGAGACCAAAC+AGG - chr2_2:18664914-18664933 Msa0242480:intron 30.0%
! ATCATTAAGTTAAGCACTGT+AGG - chr2_2:18665065-18665084 Msa0242480:CDS 30.0%
! TCATTAAGTTAAGCACTGTA+GGG - chr2_2:18665066-18665085 Msa0242480:CDS 30.0%
!!! GCATTTTTTTCCTTCTAATC+TGG - chr2_2:18665116-18665135 Msa0242480:CDS 30.0%
AAACAATGATATTTCCGTTC+AGG + chr2_2:18665149-18665168 None:intergenic 30.0%
AATTTGTCTTAGGGAGAATA+TGG - chr2_2:18665179-18665198 Msa0242480:intron 30.0%
GCTTATATGAAAGGATATGA+CGG - chr2_2:18665291-18665310 Msa0242480:intron 30.0%
!! TTATCTTTCAGAAAAGTGTC+TGG - chr2_2:18665323-18665342 Msa0242480:intron 30.0%
ATTTACTGGATCATTTGTAG+TGG + chr2_2:18665403-18665422 None:intergenic 30.0%
ATGTATCCTTTAAGTACACT+TGG + chr2_2:18665446-18665465 None:intergenic 30.0%
AGTGTACTTAAAGGATACAT+TGG - chr2_2:18665446-18665465 Msa0242480:intron 30.0%
ACTAAAATTGCGATATCAGT+CGG - chr2_2:18665530-18665549 Msa0242480:intron 30.0%
! ATTGGTTATATTTTCGATGC+AGG - chr2_2:18665803-18665822 Msa0242480:intron 30.0%
GGCAATATCGTAAAATTCTA+TGG - chr2_2:18665853-18665872 Msa0242480:intron 30.0%
ATGTGATTAATTTCGTTACG+TGG - chr2_2:18666218-18666237 Msa0242480:intron 30.0%
ACATGATAAGTTCCTATGAA+AGG - chr2_2:18666449-18666468 Msa0242480:CDS 30.0%
TTACACAAGTCTAAAGGAAT+TGG + chr2_2:18666495-18666514 None:intergenic 30.0%
GTTACATTACACAAGTCTAA+AGG + chr2_2:18666501-18666520 None:intergenic 30.0%
TGCTTAATTATGATGTTTGG+TGG - chr2_2:18666658-18666677 Msa0242480:intron 30.0%
AATGACACTCTGTTCTTCTT+TGG + chr2_2:18659844-18659863 None:intergenic 35.0%
GTACTAACTGTGAACAGAAA+AGG + chr2_2:18659994-18660013 None:intergenic 35.0%
AGTTGTCAAAGATTTGAGGA+AGG + chr2_2:18660488-18660507 None:intergenic 35.0%
TTAACTCACCAACCGATTAA+GGG - chr2_2:18660611-18660630 Msa0242480:CDS 35.0%
AATTCCATCGACGTATAGTT+TGG - chr2_2:18660756-18660775 Msa0242480:CDS 35.0%
TGAGTAGAAGTAGAAACATG+TGG - chr2_2:18660815-18660834 Msa0242480:intron 35.0%
TATTGTATATGACTCAGACC+TGG - chr2_2:18660912-18660931 Msa0242480:intron 35.0%
TATTGCTATCAGAACTAACC+TGG - chr2_2:18661058-18661077 Msa0242480:CDS 35.0%
TTAGGAACTTCCGAAAAGAT+GGG - chr2_2:18661536-18661555 Msa0242480:intron 35.0%
!!! CTTTTTTCCCCTTATCAATC+AGG - chr2_2:18661802-18661821 Msa0242480:intron 35.0%
TTACCAACCTGATTGATAAG+GGG + chr2_2:18661812-18661831 None:intergenic 35.0%
CATTACCAACCTGATTGATA+AGG + chr2_2:18661814-18661833 None:intergenic 35.0%
ATCCACGTATATTATGCACA+CGG - chr2_2:18661842-18661861 Msa0242480:intron 35.0%
! GCTTTGTTCGAAGATGTTAT+TGG - chr2_2:18661879-18661898 Msa0242480:intron 35.0%
!! TTGTTTTTCTTTCAGGAGTC+TGG - chr2_2:18662085-18662104 Msa0242480:CDS 35.0%
TCATTATCGTGAAACACAAG+AGG - chr2_2:18662124-18662143 Msa0242480:CDS 35.0%
AACACATTCATCGGTAAACA+AGG + chr2_2:18662287-18662306 None:intergenic 35.0%
! CAACGAAGTTTTTCTAGACT+TGG + chr2_2:18662320-18662339 None:intergenic 35.0%
AACCCATGACAATCTAAAAG+TGG + chr2_2:18662377-18662396 None:intergenic 35.0%
! TCATCTAAAGTGAGCAAGAA+AGG + chr2_2:18662430-18662449 None:intergenic 35.0%
GGACTCGCATTTGAATTTAA+TGG + chr2_2:18662591-18662610 None:intergenic 35.0%
AAGTCTTCTGATAGAATCCA+TGG + chr2_2:18662633-18662652 None:intergenic 35.0%
ATGGATTCTATCAGAAGACT+TGG - chr2_2:18662632-18662651 Msa0242480:CDS 35.0%
AAAATAGGTATCTACGGTCA+AGG + chr2_2:18662946-18662965 None:intergenic 35.0%
! ACCTCCATTTTGTATAGTAG+GGG + chr2_2:18663091-18663110 None:intergenic 35.0%
CTAAATCAAAGCTTACCGAA+TGG - chr2_2:18663216-18663235 Msa0242480:CDS 35.0%
TTGCAAAGTCAGAATAGCTT+TGG - chr2_2:18663551-18663570 Msa0242480:CDS 35.0%
AGAACATGGTGTGTAAGATA+TGG + chr2_2:18663594-18663613 None:intergenic 35.0%
! TCATGATCCATTTTCATCAC+TGG - chr2_2:18663655-18663674 Msa0242480:intron 35.0%
TTCTTCCACTGAGAAAACAA+AGG - chr2_2:18663748-18663767 Msa0242480:intron 35.0%
AGAGAAAATATCCAGTTACC+AGG + chr2_2:18663895-18663914 None:intergenic 35.0%
TCCAATATAATGTGTGTCTG+TGG - chr2_2:18663938-18663957 Msa0242480:intron 35.0%
TGTTCCTGTAGAAATTGTTC+AGG - chr2_2:18663970-18663989 Msa0242480:CDS 35.0%
AAATAGAGATTCACGAATCC+AGG + chr2_2:18664031-18664050 None:intergenic 35.0%
AATCTCTATTTGAGCTTCGA+TGG - chr2_2:18664040-18664059 Msa0242480:CDS 35.0%
CTTCACTAGAGAAAACATCA+AGG + chr2_2:18664213-18664232 None:intergenic 35.0%
! GTATTTTTCGCTTGCAGAAA+GGG + chr2_2:18664340-18664359 None:intergenic 35.0%
TTTCAACGCAATTTCGAACA+AGG + chr2_2:18664362-18664381 None:intergenic 35.0%
TTGCGTTGAAAAACAAACTC+AGG - chr2_2:18664371-18664390 Msa0242480:intron 35.0%
TGCGTTGAAAAACAAACTCA+GGG - chr2_2:18664372-18664391 Msa0242480:intron 35.0%
TGAAAAACAAACTCAGGGAA+TGG - chr2_2:18664377-18664396 Msa0242480:intron 35.0%
TGCAATGTTGGGATATACTT+GGG - chr2_2:18664474-18664493 Msa0242480:intron 35.0%
!!! ATTACTTTGTTTTCGTGGTC+AGG - chr2_2:18664499-18664518 Msa0242480:intron 35.0%
GATACTAGGAACTAAAGAAG+CGG - chr2_2:18664826-18664845 Msa0242480:intron 35.0%
!! CTAACTTGACGGATTTCATA+TGG - chr2_2:18664868-18664887 Msa0242480:intron 35.0%
TACTTGAGAGACCAAATTGA+TGG - chr2_2:18664946-18664965 Msa0242480:intron 35.0%
!! TTAAGCACTGTAGGGTTTTT+AGG - chr2_2:18665074-18665093 Msa0242480:CDS 35.0%
GCTGATCTTGCTTATATGAA+AGG - chr2_2:18665282-18665301 Msa0242480:intron 35.0%
! TTTTCATTGCTGCTACTATC+TGG + chr2_2:18665587-18665606 None:intergenic 35.0%
!! CTTTGAGACAAGAAAAGCAA+TGG - chr2_2:18665626-18665645 Msa0242480:CDS 35.0%
CGTAAAATTCTATGGTCTGT+TGG - chr2_2:18665861-18665880 Msa0242480:intron 35.0%
!!! CGTTGGCTTTTAAAGAGAAA+AGG - chr2_2:18665906-18665925 Msa0242480:intron 35.0%
TTAAAGAGAAAAGGTTTCCG+TGG - chr2_2:18665915-18665934 Msa0242480:intron 35.0%
TAAAGAGAAAAGGTTTCCGT+GGG - chr2_2:18665916-18665935 Msa0242480:intron 35.0%
GATTAATTTCGTTACGTGGA+TGG - chr2_2:18666222-18666241 Msa0242480:intron 35.0%
AGAACTCATCAATTCTGATG+TGG - chr2_2:18666409-18666428 Msa0242480:intron 35.0%
TTAGCTCAATTTGCACACTA+TGG + chr2_2:18666585-18666604 None:intergenic 35.0%
ACTTGTCATAGGTGTGATGA+TGG - chr2_2:18660138-18660157 Msa0242480:three_prime_UTR 40.0%
ATGGCACAAAACAACTTCAC+AGG - chr2_2:18660157-18660176 Msa0242480:three_prime_UTR 40.0%
!! CTTGTTGGTTCAGAGATACA+TGG - chr2_2:18660184-18660203 Msa0242480:exon 40.0%
ATGCATTGTACTACCTCTCA+AGG + chr2_2:18660218-18660237 None:intergenic 40.0%
!!! TGGTTGCGTTAGTTTTGTCA+GGG - chr2_2:18660542-18660561 Msa0242480:CDS 40.0%
!! CTTAATCGGTTGGTGAGTTA+AGG + chr2_2:18660612-18660631 None:intergenic 40.0%
CTTAACTCACCAACCGATTA+AGG - chr2_2:18660610-18660629 Msa0242480:CDS 40.0%
TTGTAACCGGTACCCTTAAT+CGG + chr2_2:18660626-18660645 None:intergenic 40.0%
TGTTCCAAACTATACGTCGA+TGG + chr2_2:18660763-18660782 None:intergenic 40.0%
AGTATGGCGTGAATCTCATT+CGG + chr2_2:18660982-18661001 None:intergenic 40.0%
GCAAATTCAATGGCTTGACA+TGG + chr2_2:18661029-18661048 None:intergenic 40.0%
CTAACCTGGTGTTTCTTTAG+TGG - chr2_2:18661072-18661091 Msa0242480:CDS 40.0%
GAATCCACTAAAGAAACACC+AGG + chr2_2:18661079-18661098 None:intergenic 40.0%
TATTTGACCGCAAGATGCTT+AGG - chr2_2:18661518-18661537 Msa0242480:intron 40.0%
CTTAGGAACTTCCGAAAAGA+TGG - chr2_2:18661535-18661554 Msa0242480:intron 40.0%
CTCATGAGCACTTAAAAGTG+AGG - chr2_2:18661602-18661621 Msa0242480:intron 40.0%
TTTCCCCTTATCAATCAGGT+TGG - chr2_2:18661806-18661825 Msa0242480:intron 40.0%
AACATCTTCGAACAAAGCCT+GGG + chr2_2:18661877-18661896 None:intergenic 40.0%
TAACATCTTCGAACAAAGCC+TGG + chr2_2:18661878-18661897 None:intergenic 40.0%
GTGTTTCACGATAATGAACC+AGG + chr2_2:18662121-18662140 None:intergenic 40.0%
! TGCTAACATTCGTTAGGTTG+TGG - chr2_2:18662534-18662553 Msa0242480:CDS 40.0%
GGTGCAGTTGTATCAGAAAT+AGG + chr2_2:18662612-18662631 None:intergenic 40.0%
TTTCTGATACAACTGCACCA+TGG - chr2_2:18662613-18662632 Msa0242480:CDS 40.0%
CTATCAGAAGACTTGGATTC+TGG - chr2_2:18662639-18662658 Msa0242480:CDS 40.0%
! CATTCCCTTTACTGTTTTCG+AGG - chr2_2:18662966-18662985 Msa0242480:CDS 40.0%
CCTACCTCGAAAACAGTAAA+GGG + chr2_2:18662973-18662992 None:intergenic 40.0%
ACCTACCTCGAAAACAGTAA+AGG + chr2_2:18662974-18662993 None:intergenic 40.0%
!! GTTTTCGAGGTAGGTCTTAA+TGG - chr2_2:18662979-18662998 Msa0242480:CDS 40.0%
ACTTGATTGGGATGAACTAG+TGG - chr2_2:18663050-18663069 Msa0242480:CDS 40.0%
ACCCCTACTATACAAAATGG+AGG - chr2_2:18663087-18663106 Msa0242480:CDS 40.0%
! TCTTCTTTATCTGGAGCCAA+TGG - chr2_2:18663118-18663137 Msa0242480:CDS 40.0%
ACATTGTCAAAGCTGCCATT+CGG + chr2_2:18663234-18663253 None:intergenic 40.0%
CAGTTGTACGAGTACAAAGT+CGG + chr2_2:18663332-18663351 None:intergenic 40.0%
! TACGTAGGAATTTCTGAGGA+AGG + chr2_2:18663398-18663417 None:intergenic 40.0%
TCCTCAGAAATTCCTACGTA+TGG - chr2_2:18663398-18663417 Msa0242480:intron 40.0%
ACCATACGTAGGAATTTCTG+AGG + chr2_2:18663402-18663421 None:intergenic 40.0%
GGAGTTAGAATACCATACGT+AGG + chr2_2:18663413-18663432 None:intergenic 40.0%
TTACACACCATGTTCTGTAG+AGG - chr2_2:18663598-18663617 Msa0242480:CDS 40.0%
AATGGATCATGAACAGACGA+AGG + chr2_2:18663647-18663666 None:intergenic 40.0%
! TGATCCATTTTCATCACTGG+TGG - chr2_2:18663658-18663677 Msa0242480:intron 40.0%
!!! GGAAACCTTTGTTTTCTCAG+TGG + chr2_2:18663756-18663775 None:intergenic 40.0%
GCCACAGACACACATTATAT+TGG + chr2_2:18663942-18663961 None:intergenic 40.0%
CCAACCTGAACAATTTCTAC+AGG + chr2_2:18663977-18663996 None:intergenic 40.0%
CCTGTAGAAATTGTTCAGGT+TGG - chr2_2:18663974-18663993 Msa0242480:CDS 40.0%
CAACTTGGCTAATAGGCTTA+TGG + chr2_2:18664066-18664085 None:intergenic 40.0%
AATGGAGGAGACATACAACT+GGG - chr2_2:18664132-18664151 Msa0242480:intron 40.0%
GAGAAAACATCAAGGGTCTT+CGG + chr2_2:18664205-18664224 None:intergenic 40.0%
TTAGTCTCTTTCAGTGCAGT+AGG + chr2_2:18664241-18664260 None:intergenic 40.0%
! GGTATTTTTCGCTTGCAGAA+AGG + chr2_2:18664341-18664360 None:intergenic 40.0%
ACTACTGAGTATGATGCACA+AGG - chr2_2:18664430-18664449 Msa0242480:intron 40.0%
GTGCAATGTTGGGATATACT+TGG - chr2_2:18664473-18664492 Msa0242480:intron 40.0%
!!! GGGCTATTACTTTGTTTTCG+TGG - chr2_2:18664494-18664513 Msa0242480:intron 40.0%
CTAGATTTCCGCGACAAATT+TGG - chr2_2:18664529-18664548 Msa0242480:CDS 40.0%
ATTTCCGCGACAAATTTGGA+TGG - chr2_2:18664533-18664552 Msa0242480:CDS 40.0%
CTTCATTGGGCAGCATATAA+TGG - chr2_2:18664562-18664581 Msa0242480:intron 40.0%
GTTTGTTCAAACAACTGGAG+TGG + chr2_2:18664604-18664623 None:intergenic 40.0%
ACTTAGGGGACACAATTGAT+GGG + chr2_2:18664669-18664688 None:intergenic 40.0%
TACTTAGGGGACACAATTGA+TGG + chr2_2:18664670-18664689 None:intergenic 40.0%
AGCAGTGAGAGTGATACTTA+GGG + chr2_2:18664684-18664703 None:intergenic 40.0%
TAGCAGTGAGAGTGATACTT+AGG + chr2_2:18664685-18664704 None:intergenic 40.0%
! GACGGATTTCATATGGTTCA+AGG - chr2_2:18664875-18664894 Msa0242480:intron 40.0%
AAGTATCACACTCTCCTGTT+TGG + chr2_2:18664931-18664950 None:intergenic 40.0%
AGGCTCATAACCAGATTAGA+AGG + chr2_2:18665129-18665148 None:intergenic 40.0%
AATCTGGTTATGAGCCTGAA+CGG - chr2_2:18665132-18665151 Msa0242480:intron 40.0%
GTTGGATCTGTCACCAAATT+GGG + chr2_2:18665234-18665253 None:intergenic 40.0%
AGTTGGATCTGTCACCAAAT+TGG + chr2_2:18665235-18665254 None:intergenic 40.0%
TTCAATGACATGAGCTTAGC+TGG - chr2_2:18665354-18665373 Msa0242480:intron 40.0%
AGCTTAGCTGGAAATATCAG+TGG - chr2_2:18665366-18665385 Msa0242480:intron 40.0%
CTGGATCATTTGTAGTGGTT+TGG + chr2_2:18665398-18665417 None:intergenic 40.0%
GTAAGGTTCTCAGCATTTAC+TGG + chr2_2:18665417-18665436 None:intergenic 40.0%
AAATGCTGAGAACCTTACAG+AGG - chr2_2:18665419-18665438 Msa0242480:intron 40.0%
AGAGGACCAAGTGTACTTAA+AGG - chr2_2:18665437-18665456 Msa0242480:intron 40.0%
GGTTCAATTTATCAGTCCAG+AGG - chr2_2:18665551-18665570 Msa0242480:intron 40.0%
TCAATTTATCAGTCCAGAGG+AGG - chr2_2:18665554-18665573 Msa0242480:intron 40.0%
TCTTGTCTCAAAGTTGCGAA+AGG + chr2_2:18665619-18665638 None:intergenic 40.0%
TTGAGAAAGTAATCCTGCGT+TGG - chr2_2:18665889-18665908 Msa0242480:intron 40.0%
! TTCTCTTTAAAAGCCAACGC+AGG + chr2_2:18665905-18665924 None:intergenic 40.0%
TCATCTTTCATGTCTTCGTC+CGG + chr2_2:18665954-18665973 None:intergenic 40.0%
AGACATGAAAGATGAGAAGC+AGG - chr2_2:18665959-18665978 Msa0242480:intron 40.0%
!! GAAGAGGACTTCTTTAAGAC+TGG - chr2_2:18665993-18666012 Msa0242480:intron 40.0%
!! AGGACTTCTTTAAGACTGGT+AGG - chr2_2:18665997-18666016 Msa0242480:intron 40.0%
TAAGACTGGTAGGAAACAAG+CGG - chr2_2:18666007-18666026 Msa0242480:intron 40.0%
CTTGTTGCGCTTTCTTAGAA+CGG + chr2_2:18666076-18666095 None:intergenic 40.0%
AGAGTATAGCAGGATGAAGA+TGG - chr2_2:18666094-18666113 Msa0242480:intron 40.0%
GTAGAATTGCTTTGTGCAGT+TGG - chr2_2:18666373-18666392 Msa0242480:intron 40.0%
! TGATGTTTGGTGGATGTTAC+TGG - chr2_2:18666668-18666687 Msa0242480:intron 40.0%
! AGAAGAGGGTCTGTTCTGAA+TGG + chr2_2:18659900-18659919 None:intergenic 45.0%
AACTTCACAGGACAGCTTGT+TGG - chr2_2:18660169-18660188 Msa0242480:three_prime_UTR 45.0%
TTGTACTACCTCTCAAGGTG+TGG + chr2_2:18660213-18660232 None:intergenic 45.0%
!!! GTGGTTGCGTTAGTTTTGTC+AGG - chr2_2:18660541-18660560 Msa0242480:CDS 45.0%
TATGACTCAGACCTGGATGT+CGG - chr2_2:18660919-18660938 Msa0242480:CDS 45.0%
!!! TCTGCTTTTTGCTTCCTCCA+GGG + chr2_2:18660950-18660969 None:intergenic 45.0%
!!! ATCTGCTTTTTGCTTCCTCC+AGG + chr2_2:18660951-18660970 None:intergenic 45.0%
TGGAGGAAGCAAAAAGCAGA+TGG - chr2_2:18660950-18660969 Msa0242480:CDS 45.0%
GGAAGTTCCTAAGCATCTTG+CGG + chr2_2:18661528-18661547 None:intergenic 45.0%
! TCCAGTTGTGCCCATCTTTT+CGG + chr2_2:18661549-18661568 None:intergenic 45.0%
GAACAAAGCCTGGGTTATCT+TGG + chr2_2:18661868-18661887 None:intergenic 45.0%
!! TGGGCTTGCTAACATTCGTT+AGG - chr2_2:18662528-18662547 Msa0242480:CDS 45.0%
ACCAGCAGTGCTTATACGAA+TGG - chr2_2:18662663-18662682 Msa0242480:CDS 45.0%
! ACCATTCGTATAAGCACTGC+TGG + chr2_2:18662667-18662686 None:intergenic 45.0%
!! CCCTTTACTGTTTTCGAGGT+AGG - chr2_2:18662970-18662989 Msa0242480:CDS 45.0%
GTTCTTTCCGAACAAGCCAT+TGG + chr2_2:18663137-18663156 None:intergenic 45.0%
!! GTCAGAATAGCTTTGGAACG+TGG - chr2_2:18663558-18663577 Msa0242480:CDS 45.0%
! TCCATTTTCATCACTGGTGG+TGG - chr2_2:18663661-18663680 Msa0242480:intron 45.0%
TCCACCACCAGTGATGAAAA+TGG + chr2_2:18663665-18663684 None:intergenic 45.0%
AGTGGAAGAAACCCATGAAG+GGG + chr2_2:18663738-18663757 None:intergenic 45.0%
CAGTGGAAGAAACCCATGAA+GGG + chr2_2:18663739-18663758 None:intergenic 45.0%
TCAGTGGAAGAAACCCATGA+AGG + chr2_2:18663740-18663759 None:intergenic 45.0%
CAGGACCTGCAAGAAGTAAA+GGG + chr2_2:18663876-18663895 None:intergenic 45.0%
TTCACGAATCCAGGAGAATG+CGG + chr2_2:18664022-18664041 None:intergenic 45.0%
CAATGGAGGAGACATACAAC+TGG - chr2_2:18664131-18664150 Msa0242480:intron 45.0%
! TTTTTCGCTTGCAGAAAGGG+AGG + chr2_2:18664337-18664356 None:intergenic 45.0%
! CAAACTCAGGGAATGGCTTT+TGG - chr2_2:18664384-18664403 Msa0242480:intron 45.0%
CTGTCCATCCAAATTTGTCG+CGG + chr2_2:18664540-18664559 None:intergenic 45.0%
TTGGATGGACAGCTCTTCAT+TGG - chr2_2:18664548-18664567 Msa0242480:intron 45.0%
TGGATGGACAGCTCTTCATT+GGG - chr2_2:18664549-18664568 Msa0242480:intron 45.0%
GCAGTGAGAGTGATACTTAG+GGG + chr2_2:18664683-18664702 None:intergenic 45.0%
GTTGCTACGTTGTTGTCTTG+TGG - chr2_2:18665201-18665220 Msa0242480:intron 45.0%
TTGTGGAGCAAAGCCCAATT+TGG - chr2_2:18665218-18665237 Msa0242480:intron 45.0%
AGTACACTTGGTCCTCTGTA+AGG + chr2_2:18665434-18665453 None:intergenic 45.0%
AGGATACATTGGCAGCTTAC+CGG - chr2_2:18665457-18665476 Msa0242480:intron 45.0%
ACGCATACAAGCAGCGTTTA+GGG - chr2_2:18665500-18665519 Msa0242480:intron 45.0%
TCCAGTACAGATTCCGTTCA+TGG - chr2_2:18665664-18665683 Msa0242480:CDS 45.0%
TCCATGAACGGAATCTGTAC+TGG + chr2_2:18665668-18665687 None:intergenic 45.0%
CTCTACGCAACTTCCATGAA+CGG + chr2_2:18665680-18665699 None:intergenic 45.0%
! TTAGAGGCTTTCAAGTGCGT+AGG - chr2_2:18665832-18665851 Msa0242480:intron 45.0%
CGCTTTCTTAGAACGGAACA+TGG + chr2_2:18666069-18666088 None:intergenic 45.0%
! AAGCGCAACAAGAGTATAGC+AGG - chr2_2:18666084-18666103 Msa0242480:intron 45.0%
GATGGCACATAGTCAAGCAA+AGG - chr2_2:18666112-18666131 Msa0242480:intron 45.0%
!!! TTTAATTTTTTTTTTTTTTG+TGG - chr2_2:18660321-18660340 Msa0242480:intron 5.0%
!!! TATTATTTTTATATACTTTA+GGG + chr2_2:18664714-18664733 None:intergenic 5.0%
!!! TTATTATTTTTATATACTTT+AGG + chr2_2:18664715-18664734 None:intergenic 5.0%
CATGGATTCCACACCTTGAG+AGG - chr2_2:18660202-18660221 Msa0242480:CDS 50.0%
! CACCAACCGATTAAGGGTAC+CGG - chr2_2:18660617-18660636 Msa0242480:CDS 50.0%
AACCGGTACCCTTAATCGGT+TGG + chr2_2:18660622-18660641 None:intergenic 50.0%
TCCGAAAAGATGGGCACAAC+TGG - chr2_2:18661545-18661564 Msa0242480:intron 50.0%
GGCCGTGTGCATAATATACG+TGG + chr2_2:18661847-18661866 None:intergenic 50.0%
!! TCTGGAGCCAATGGCTTGTT+CGG - chr2_2:18663127-18663146 Msa0242480:CDS 50.0%
ATTCTAACTCCGCCAGAGTC+TGG - chr2_2:18663422-18663441 Msa0242480:CDS 50.0%
TTCTAACTCCGCCAGAGTCT+GGG - chr2_2:18663423-18663442 Msa0242480:CDS 50.0%
ACATTACTGCTCCCAGACTC+TGG + chr2_2:18663437-18663456 None:intergenic 50.0%
GTTGACGCCTCTACAGAACA+TGG + chr2_2:18663608-18663627 None:intergenic 50.0%
CATGGCCCTTTACTTCTTGC+AGG - chr2_2:18663868-18663887 Msa0242480:intron 50.0%
CCAGGACCTGCAAGAAGTAA+AGG + chr2_2:18663877-18663896 None:intergenic 50.0%
CCTTTACTTCTTGCAGGTCC+TGG - chr2_2:18663874-18663893 Msa0242480:intron 50.0%
TTCTTGCAGGTCCTGGTAAC+TGG - chr2_2:18663881-18663900 Msa0242480:intron 50.0%
AGGTTGGAGTTTACCGATGC+TGG - chr2_2:18663990-18664009 Msa0242480:CDS 50.0%
GGTTGGAGTTTACCGATGCT+GGG - chr2_2:18663991-18664010 Msa0242480:CDS 50.0%
AATGCGGCAATACCCAGCAT+CGG + chr2_2:18664006-18664025 None:intergenic 50.0%
GCAGCAGGATCGTGCAAAAT+AGG + chr2_2:18664109-18664128 None:intergenic 50.0%
GATCCAACTACCGAATACCC+TGG - chr2_2:18665246-18665265 Msa0242480:intron 50.0%
! AGTACAGCCACCAGGGTATT+CGG + chr2_2:18665259-18665278 None:intergenic 50.0%
CACGCATACAAGCAGCGTTT+AGG - chr2_2:18665499-18665518 Msa0242480:intron 50.0%
TAATAGCCTGACGTCGCATG+TGG + chr2_2:18665710-18665729 None:intergenic 50.0%
TCGATGCAGGCTGCATTTAG+AGG - chr2_2:18665816-18665835 Msa0242480:intron 50.0%
AAAAGGTTTCCGTGGGCTTG+AGG - chr2_2:18665923-18665942 Msa0242480:intron 50.0%
GCAGGAAAGCGATGTAGAAG+AGG - chr2_2:18665977-18665996 Msa0242480:intron 50.0%
AGAACGCGTTGAGAGATCTG+TGG - chr2_2:18666031-18666050 Msa0242480:intron 50.0%
! GAGTCTGGAGCACATAGTCC+TGG - chr2_2:18662100-18662119 Msa0242480:CDS 55.0%
TTACTGCTCCCAGACTCTGG+CGG + chr2_2:18663434-18663453 None:intergenic 55.0%
TTACTGAGGTGGCCCCTTCA+TGG - chr2_2:18663723-18663742 Msa0242480:intron 55.0%
TACTGAGGTGGCCCCTTCAT+GGG - chr2_2:18663724-18663743 Msa0242480:intron 55.0%
! TGGGTATTGCCGCATTCTCC+TGG - chr2_2:18664010-18664029 Msa0242480:CDS 55.0%
! GCACGATCCTGCTGCTTCAA+TGG - chr2_2:18664114-18664133 Msa0242480:intron 55.0%
! CGATCCTGCTGCTTCAATGG+AGG - chr2_2:18664117-18664136 Msa0242480:intron 55.0%
GTCTCCTCCATTGAAGCAGC+AGG + chr2_2:18664124-18664143 None:intergenic 55.0%
! CCACCAGGGTATTCGGTAGT+TGG + chr2_2:18665252-18665271 None:intergenic 55.0%
CCAACTACCGAATACCCTGG+TGG - chr2_2:18665249-18665268 Msa0242480:intron 55.0%
AGCTTACCGGACAACAGCTG+AGG - chr2_2:18665470-18665489 Msa0242480:intron 55.0%
TCTGTACTGGATCCGAGCAG+CGG + chr2_2:18665655-18665674 None:intergenic 55.0%
GTTTCTCCACATGCGACGTC+AGG - chr2_2:18665701-18665720 Msa0242480:CDS 55.0%
GCACACGGCCAAGATAACCC+AGG - chr2_2:18661857-18661876 Msa0242480:intron 60.0%
CAGCAGCAGTACAGCCACCA+GGG + chr2_2:18665266-18665285 None:intergenic 60.0%
TCAGCAGCAGTACAGCCACC+AGG + chr2_2:18665267-18665286 None:intergenic 60.0%
CTGCTGCCTCAGCTGTTGTC+CGG + chr2_2:18665479-18665498 None:intergenic 60.0%
ATCTGGCGTGCTTCCTCCTC+TGG + chr2_2:18665570-18665589 None:intergenic 60.0%
AAGCAATGGCAGCCGCTGCT+CGG - chr2_2:18665640-18665659 Msa0242480:CDS 60.0%
CCGGATTCACCTCAAGCCCA+CGG + chr2_2:18665935-18665954 None:intergenic 60.0%
CCGTGGGCTTGAGGTGAATC+CGG - chr2_2:18665932-18665951 Msa0242480:intron 60.0%
CCAGGGTTTCGCCGACATCC+AGG + chr2_2:18660933-18660952 None:intergenic 65.0%
CCTGGATGTCGGCGAAACCC+TGG - chr2_2:18660930-18660949 Msa0242480:CDS 65.0%
GGATGTCGGCGAAACCCTGG+AGG - chr2_2:18660933-18660952 Msa0242480:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 18659837 18666815 18659837 ID=Msa0242480;Name=Msa0242480
chr2_2 mRNA 18659837 18666815 18659837 ID=Msa0242480-mRNA-1;Parent=Msa0242480;Name=Msa0242480-mRNA-1;_AED=0.08;_eAED=0.08;_QI=152|0.92|0.92|1|0.92|0.92|14|361|907
chr2_2 exon 18659837 18660260 18659837 ID=Msa0242480-mRNA-1:exon:7635;Parent=Msa0242480-mRNA-1
chr2_2 exon 18660519 18660827 18660519 ID=Msa0242480-mRNA-1:exon:7634;Parent=Msa0242480-mRNA-1
chr2_2 exon 18660915 18661461 18660915 ID=Msa0242480-mRNA-1:exon:7633;Parent=Msa0242480-mRNA-1
chr2_2 exon 18662065 18662762 18662065 ID=Msa0242480-mRNA-1:exon:7632;Parent=Msa0242480-mRNA-1
chr2_2 exon 18662883 18663269 18662883 ID=Msa0242480-mRNA-1:exon:7631;Parent=Msa0242480-mRNA-1
chr2_2 exon 18663401 18663459 18663401 ID=Msa0242480-mRNA-1:exon:7630;Parent=Msa0242480-mRNA-1
chr2_2 exon 18663544 18663639 18663544 ID=Msa0242480-mRNA-1:exon:7629;Parent=Msa0242480-mRNA-1
chr2_2 exon 18663968 18664085 18663968 ID=Msa0242480-mRNA-1:exon:7628;Parent=Msa0242480-mRNA-1
chr2_2 exon 18664507 18664552 18664507 ID=Msa0242480-mRNA-1:exon:7627;Parent=Msa0242480-mRNA-1
chr2_2 exon 18664740 18664828 18664740 ID=Msa0242480-mRNA-1:exon:7626;Parent=Msa0242480-mRNA-1
chr2_2 exon 18665034 18665149 18665034 ID=Msa0242480-mRNA-1:exon:7625;Parent=Msa0242480-mRNA-1
chr2_2 exon 18665598 18665723 18665598 ID=Msa0242480-mRNA-1:exon:7624;Parent=Msa0242480-mRNA-1
chr2_2 exon 18666429 18666557 18666429 ID=Msa0242480-mRNA-1:exon:7623;Parent=Msa0242480-mRNA-1
chr2_2 exon 18666723 18666815 18666723 ID=Msa0242480-mRNA-1:exon:7622;Parent=Msa0242480-mRNA-1
chr2_2 five_prime_UTR 18666723 18666815 18666723 ID=Msa0242480-mRNA-1:five_prime_utr;Parent=Msa0242480-mRNA-1
chr2_2 five_prime_UTR 18666499 18666557 18666499 ID=Msa0242480-mRNA-1:five_prime_utr;Parent=Msa0242480-mRNA-1
chr2_2 CDS 18666429 18666498 18666429 ID=Msa0242480-mRNA-1:cds;Parent=Msa0242480-mRNA-1
chr2_2 CDS 18665598 18665723 18665598 ID=Msa0242480-mRNA-1:cds;Parent=Msa0242480-mRNA-1
chr2_2 CDS 18665034 18665149 18665034 ID=Msa0242480-mRNA-1:cds;Parent=Msa0242480-mRNA-1
chr2_2 CDS 18664740 18664828 18664740 ID=Msa0242480-mRNA-1:cds;Parent=Msa0242480-mRNA-1
chr2_2 CDS 18664507 18664552 18664507 ID=Msa0242480-mRNA-1:cds;Parent=Msa0242480-mRNA-1
chr2_2 CDS 18663968 18664085 18663968 ID=Msa0242480-mRNA-1:cds;Parent=Msa0242480-mRNA-1
chr2_2 CDS 18663544 18663639 18663544 ID=Msa0242480-mRNA-1:cds;Parent=Msa0242480-mRNA-1
chr2_2 CDS 18663401 18663459 18663401 ID=Msa0242480-mRNA-1:cds;Parent=Msa0242480-mRNA-1
chr2_2 CDS 18662883 18663269 18662883 ID=Msa0242480-mRNA-1:cds;Parent=Msa0242480-mRNA-1
chr2_2 CDS 18662065 18662762 18662065 ID=Msa0242480-mRNA-1:cds;Parent=Msa0242480-mRNA-1
chr2_2 CDS 18660915 18661461 18660915 ID=Msa0242480-mRNA-1:cds;Parent=Msa0242480-mRNA-1
chr2_2 CDS 18660519 18660827 18660519 ID=Msa0242480-mRNA-1:cds;Parent=Msa0242480-mRNA-1
chr2_2 CDS 18660198 18660260 18660198 ID=Msa0242480-mRNA-1:cds;Parent=Msa0242480-mRNA-1
chr2_2 three_prime_UTR 18659837 18660197 18659837 ID=Msa0242480-mRNA-1:three_prime_utr;Parent=Msa0242480-mRNA-1
Gene Sequence

>Msa0242480

ATGATGGCACAAAACAACTTCACAGGACAGCTTGTTGGTTCAGAGATACATGGATTCCACACCTTGAGAGACCTGGATGTCGGCGAAACCCTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCGAATGAGATTCACGCCATACTCAGCAATTACAAATATTTTACTATCCATGTCAAGCCATTGAATTTGCCCAAAAGTGGTACTGTTGTACTATTTGACCGCAAGATGCTTAGGAACTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAATGACGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAGAGAATCCACGTATATTATGCACACGGCCAAGATAACCCAGGCTTTGTTCGAAGATGTTATTGGTTGCTTGATAAGAGTCTGGAGCACATAGTCCTGGTTCATTATCGTGAAACACAAGAGTCTCAAAGTTCTCCCGTTACACCATTAAATTCAAATGCGAGTCCTATTTCTGATACAACTGCACCATGGATTCTATCAGAAGACTTGGATTCTGGAACCAGCAGTGCTTATACGAATGTCAGAAGTCATGAACAGAAGCTTCATGAGCTTAATACACTTGATTGGGATGAACTAGTGGCTTCGAATGTTAATACCCCTACTATACAAAATGGAGGAAACGAACCGCGTTACTATCAACTAAATCAAAGCTTACCGAATGGCAGCTTTGACAATGTTGCTGGTAATCCTTCCTCAGAAATTCCTACGTATGGTATTCTAACTCCGCCAGAGTCTGGGAGCAGTAATGTTTCTTACTGTTTCCCAGAAAGTGTTAACGATCAAAAGAATCATTCTATAAATCTTGGTGGTGTTGATTCCGTTGACATTTTAGTCAATGAAGGTTTGCAAAGTCAGAATAGCTTTGGAACGTGGATGAACAATGCCATATCTTACACACCATGTTCTGTAGAGGCGTCAACTCTTGAATCGTCAATTCCTTCGTCTGTTCATGATCCATTTTCATCACTGGTGGTGGATAATCAACAATCTTCTCTTCCGGAACAAGTATTTCATATTACTGAGGTGGCCCCTTCATGGGTTTCTTCCACTGAGAAAACAAAGGTCCTGGTAACTGGATATTTTCTCTTTGATTATCAACACCTTGCAAAGTCCAATATAATGTGTGTCTGTGGCGAAACAAGTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTATTGCCGCATTCTCCTGGATTCGTGAATCTCTATTTGAGCTTCGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGCACTCCTATTTTGCACGATCCTGCTGCTTCAATGGAGGAGACATACAACTGGGTTGAATTTCGTCTTCAAATGAGGCTTTCTCATTTGCTTTTTACAACACCGAAGACCCTTGATGTTTTCTCTAGTGAAGCATCACCTACTGCACTGAAAGAGACTAAAAAATTCGCCTCCAAAACATTATTTCTTTCCAAAAGTTTTATACACTTCATGAAGTCGTCTGACGCAAACGCACCTCCCTTTCTGCAAGCGAAAAATACCTTGTTCGAAATTGCGTTGAAAAACAAACTCAGGGAATGGCTTTTGGAACGTATTGTTTTAGGATGTAAGACTACTGAGTATGATGCACAAGGCCAAAGTGTAATTCATTTGTGTGCAATGTTGGGATATACTTGGGCTATTACTTTGTTTTCGTGGTCAGGCTTGTCGCTAGATTTCCGCGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATAATGGAATGGAGAATATGGTTGCTACGTTGTTGTCTTGTGGAGCAAAGCCCAATTTGGTGACAGATCCAACTACCGAATACCCTGGTGGCTGTACTGCTGCTGATCTTGCTTATATGAAAGGATATGACGGTTTAGCTGCTTATCTTTCAGAAAAGTGTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGTTCACTCCAAACCACTACAAATGATCCAGTAAATGCTGAGAACCTTACAGAGGACCAAGTGTACTTAAAGGATACATTGGCAGCTTACCGGACAACAGCTGAGGCAGCAGCACGCATACAAGCAGCGTTTAGGGAGCACTCACTAAAATTGCGATATCAGTCGGTTCAATTTATCAGTCCAGAGGAGGAAGCACGCCAGATAGTAGCAGCAATGAAAATTCAACATGCCTTTCGCAACTTTGAGACAAGAAAAGCAATGGCAGCCGCTGCTCGGATCCAGTACAGATTCCGTTCATGGAAGTTGCGTAGAGAGTTTCTCCACATGCGACGTCAGGCTATTAGAATTCAAGCTGCATTTAGAGGCTTTCAAGTGCGTAGGCAATATCGTAAAATTCTATGGTCTGTTGGAATTCTTGAGAAAGTAATCCTGCGTTGGCTTTTAAAGAGAAAAGGTTTCCGTGGGCTTGAGGTGAATCCGGACGAAGACATGAAAGATGAGAAGCAGGAAAGCGATGTAGAAGAGGACTTCTTTAAGACTGGTAGGAAACAAGCGGAAGAACGCGTTGAGAGATCTGTGGTACGCGTACAAGCCATGTTCCGTTCTAAGAAAGCGCAACAAGAGTATAGCAGGATGAAGATGGCACATAGTCAAGCAAAGTTGGAACTTGAATTAGAAGAACTCATCAATTCTGATGTGGACATGTTCACAACAAAGACATGA
Protein sequence

>Msa0242480

MMAQNNFTGQLVGSEIHGFHTLRDLDVGETLEEAKSRWLRPNEIHAILSNYKYFTIHVKPLNLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGFVRRCYWLLDKSLEHIVLVHYRETQESQSSPVTPLNSNASPISDTTAPWILSEDLDSGTSSAYTNVRSHEQKLHELNTLDWDELVASNVNTPTIQNGGNEPRYYQLNQSLPNGSFDNVAGNPSSEIPTYGILTPPESGSSNVSYCFPESVNDQKNHSINLGGVDSVDILVNEGLQSQNSFGTWMNNAISYTPCSVEASTLESSIPSSVHDPFSSLVVDNQQSSLPEQVFHITEVAPSWVSSTEKTKVLVTGYFLFDYQHLAKSNIMCVCGETSVPVEIVQVGVYRCWVLPHSPGFVNLYLSFDGHKPISQVVNFEYRTPILHDPAASMEETYNWVEFRLQMRLSHLLFTTPKTLDVFSSEASPTALKETKKFASKTLFLSKSFIHFMKSSDANAPPFLQAKNTLFEIALKNKLREWLLERIVLGCKTTEYDAQGQSVIHLCAMLGYTWAITLFSWSGLSLDFRDKFGWTALHWAAYNGMENMVATLLSCGAKPNLVTDPTTEYPGGCTAADLAYMKGYDGLAAYLSEKCLVEQFNDMSLAGNISGSLQTTTNDPVNAENLTEDQVYLKDTLAAYRTTAEAAARIQAAFREHSLKLRYQSVQFISPEEEARQIVAAMKIQHAFRNFETRKAMAAAARIQYRFRSWKLRREFLHMRRQAIRIQAAFRGFQVRRQYRKILWSVGILEKVILRWLLKRKGFRGLEVNPDEDMKDEKQESDVEEDFFKTGRKQAEERVERSVVRVQAMFRSKKAQQEYSRMKMAHSQAKLELELEELINSDVDMFTTKT*