AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427880 MtrunA17_Chr3g0130811 90.141 639 51 2 8 646 1 627 0.0 1111
Msa0427880 MtrunA17_Chr8g0384881 61.641 524 154 7 8 511 1 497 0.0 549
Msa0427880 MtrunA17_Chr8g0384881 49.724 181 81 2 484 664 379 549 2.09e-35 142
Msa0427880 MtrunA17_Chr1g0159951 42.295 584 292 11 58 619 126 686 3.70e-104 335
Msa0427880 MtrunA17_Chr3g0142411 42.035 226 108 3 74 276 93 318 6.92e-37 148
Msa0427880 MtrunA17_Chr1g0156371 34.768 302 151 6 74 348 74 356 2.89e-33 137
Msa0427880 MtrunA17_Chr5g0405291 33.000 300 169 6 8 276 1 299 8.57e-30 125
Msa0427880 MtrunA17_Chr4g0053121 34.256 289 128 7 8 268 1 255 7.47e-29 123
Msa0427880 MtrunA17_Chr5g0401911 28.502 414 214 13 8 399 1 354 1.13e-23 106
Msa0427880 MtrunA17_Chr4g0044561 27.915 283 150 9 8 276 1 243 4.53e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427880 AT3G05270.3 40.723 636 293 13 8 631 1 564 1.36e-110 347
Msa0427880 AT3G05270.2 40.723 636 293 13 8 631 1 564 1.36e-110 347
Msa0427880 AT3G05270.1 40.723 636 293 13 8 631 1 564 1.36e-110 347
Msa0427880 AT1G77580.1 45.190 343 136 6 56 397 8 299 6.91e-71 242
Msa0427880 AT1G77580.4 45.190 343 136 6 56 397 8 299 1.10e-69 241
Msa0427880 AT1G77580.2 45.190 343 136 6 56 397 42 333 2.15e-69 241
Msa0427880 AT1G77580.3 45.190 343 136 6 56 397 42 333 2.15e-69 241
Msa0427880 AT1G21810.3 36.182 550 236 17 89 611 13 474 1.10e-59 211
Msa0427880 AT1G21810.1 36.182 550 236 17 89 611 13 474 1.10e-59 211
Msa0427880 AT1G19835.6 34.118 340 162 7 8 306 1 319 9.96e-37 148
Msa0427880 AT1G19835.5 34.118 340 162 7 8 306 1 319 9.96e-37 148
Msa0427880 AT1G19835.3 34.118 340 162 7 8 306 1 319 9.96e-37 148
Msa0427880 AT1G19835.1 34.118 340 162 7 8 306 1 319 9.96e-37 148
Msa0427880 AT1G19835.4 34.118 340 162 7 8 306 1 319 9.96e-37 148
Msa0427880 AT1G19835.2 34.118 340 162 7 8 306 1 319 9.96e-37 148
Msa0427880 AT4G36120.2 34.219 301 168 4 8 278 1 301 2.91e-31 131
Msa0427880 AT4G36120.1 34.219 301 168 4 8 278 1 301 2.91e-31 131
Msa0427880 AT1G47900.2 30.499 341 167 7 8 278 1 341 3.72e-28 121
Msa0427880 AT1G47900.3 30.499 341 167 7 8 278 1 341 3.82e-28 121
Msa0427880 AT1G47900.1 30.499 341 167 7 8 278 1 341 3.82e-28 121
Msa0427880 AT1G21810.2 33.492 421 178 18 221 611 3 351 9.88e-27 115
Msa0427880 AT2G23360.1 33.333 237 135 4 63 276 16 252 3.81e-17 86.3

Find 149 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAAACAACTCTTGTAAT+TGG 0.137119 3_2:-78559141 Msa0427880:CDS
TCATAAACCATCTTATATTT+TGG 0.149682 3_2:-78557478 Msa0427880:three_prime_UTR
CCAGATTCCAGAAAATATTT+TGG 0.153566 3_2:-78557533 Msa0427880:three_prime_UTR
CCACTCAAGCTCGTCTCTTT+TGG 0.200759 3_2:+78559114 None:intergenic
GGCTTTGTCTGCTGATAATT+TGG 0.210676 3_2:-78557841 Msa0427880:CDS
CTGCTTTACCAAATCTTCTT+TGG 0.249118 3_2:+78559605 None:intergenic
AAGAGAAAGCAAGCAATATT+TGG 0.255370 3_2:-78558900 Msa0427880:CDS
GTAATACCTCGAGCTGCTTT+TGG 0.280342 3_2:+78558357 None:intergenic
AGTCTCATAGACGGTTTAAA+TGG 0.285979 3_2:-78556887 Msa0427880:three_prime_UTR
TGCTTTCTCTTTCTGCAGCT+TGG 0.289852 3_2:+78558912 None:intergenic
GCTTTCTCTTTCTGCAGCTT+GGG 0.293528 3_2:+78558913 None:intergenic
TCACCGCCATCTTGGGGAGC+TGG 0.312775 3_2:+78557290 None:intergenic
CTAAATCCATCTATTAGCTT+TGG 0.314378 3_2:-78557224 Msa0427880:three_prime_UTR
GTCTGCTTCAATTACAGAAT+TGG 0.315854 3_2:-78558639 Msa0427880:CDS
GATCAAGTTAGTCATCTTAA+TGG 0.317493 3_2:-78559235 Msa0427880:CDS
TGATCTTCTGCAGAGGCTTC+AGG 0.318270 3_2:-78559026 Msa0427880:CDS
CAACTGCTCACCGCCATCTT+GGG 0.319126 3_2:+78557283 None:intergenic
GCAGTATTTCAGTGTCTTGA+TGG 0.319413 3_2:+78557763 None:intergenic
CACCGCCATCTTGGGGAGCT+GGG 0.323771 3_2:+78557291 None:intergenic
ATCAAGTTAGTCATCTTAAT+GGG 0.324475 3_2:-78559234 Msa0427880:CDS
CATTAGTGCCAAAGAAGATT+TGG 0.331279 3_2:-78559613 Msa0427880:CDS
CAAACTCCTTCCCGGCAAAA+AGG 0.338349 3_2:+78556998 None:intergenic
GGAGAAGAAGCTAGCGAAAA+TGG 0.341125 3_2:-78558420 Msa0427880:CDS
GGTTGGTCTGATGCAGTATC+TGG 0.344154 3_2:+78558512 None:intergenic
TGTTCTGCTCAAGACCTTGT+AGG 0.358228 3_2:+78557170 None:intergenic
AATGTTCAAGCAGGTAAGTT+TGG 0.363999 3_2:-78557715 Msa0427880:CDS
ACTGATGTGCATACTCTAAC+TGG 0.369885 3_2:-78559660 Msa0427880:CDS
GCAGCCACGGAAATGACTTC+TGG 0.375082 3_2:+78559702 None:intergenic
TCAACTGCTCACCGCCATCT+TGG 0.379423 3_2:+78557282 None:intergenic
GACAGCTTCTTCAGCAACTT+TGG 0.380920 3_2:+78559578 None:intergenic
ACAGATAGCATGTCAGATAA+TGG 0.389217 3_2:-78558752 Msa0427880:CDS
TACAAGGTCTTGAGCAGAAC+AGG 0.395141 3_2:-78557168 Msa0427880:three_prime_UTR
GATGGATGATTTCCTCGAAA+TGG 0.408615 3_2:-78558552 Msa0427880:CDS
TTCCCTGGCCAACATTTGGT+TGG 0.409152 3_2:+78558495 None:intergenic
CAGCAAGCCTTTCCATTTCG+AGG 0.412193 3_2:+78558540 None:intergenic
GAAAGTGATATGCGTAAATT+CGG 0.418055 3_2:-78558710 Msa0427880:CDS
GCATGATTCAAACTCCTTCC+CGG 0.419206 3_2:+78556990 None:intergenic
TGCAAACAACTCTTGTAATT+GGG 0.422194 3_2:-78559140 Msa0427880:CDS
TGTGAATGACTCTGCATAAA+CGG 0.424603 3_2:+78558772 None:intergenic
TCTGTTCCCTGGCCAACATT+TGG 0.426822 3_2:+78558491 None:intergenic
TCATCTTAATGGGGAACTAA+AGG 0.428665 3_2:-78559224 Msa0427880:CDS
GGCCATGAGTCATAATGCTT+TGG 0.432790 3_2:+78558662 None:intergenic
ACTTGATTCAGAGGACACTA+TGG 0.441112 3_2:-78557336 Msa0427880:three_prime_UTR
TAAAATTCAAAACCATTGAA+TGG 0.442991 3_2:-78558946 Msa0427880:CDS
CTGCATAGGGAAGGTATTGA+TGG 0.443757 3_2:-78557744 Msa0427880:CDS
TTTGGCCAAGTGTGAAAAGT+TGG 0.448967 3_2:-78557823 Msa0427880:CDS
AAAATTCAAAACCATTGAAT+GGG 0.454203 3_2:-78558945 Msa0427880:CDS
GGTGCTCAAATCCCATTCAA+TGG 0.455832 3_2:+78558934 None:intergenic
TCTGCAGAGGCTTCAGGATG+TGG 0.457307 3_2:-78559020 Msa0427880:CDS
GTTGAAGTCCCTTGCAACAT+TGG 0.462272 3_2:-78557369 Msa0427880:three_prime_UTR
AAGATTATCTGCTCATGATC+AGG 0.469911 3_2:-78560563 Msa0427880:intron
ACGTGTATAAATCTAAACTT+AGG 0.476551 3_2:-78557076 Msa0427880:three_prime_UTR
AGACCAACCAAATGTTGGCC+AGG 0.478188 3_2:-78558498 Msa0427880:CDS
AGAAGAACTGTGAGTTTCAC+TGG 0.479117 3_2:+78560609 None:intergenic
AGATAATGGAGAGAGGCTAT+TGG 0.482617 3_2:-78558738 Msa0427880:CDS
AGTTGTTTGCAACAGCTTCA+AGG 0.483000 3_2:+78559152 None:intergenic
CCGGGTAAAGGAAGCAGAGT+TGG 0.490552 3_2:-78558330 Msa0427880:CDS
ACCACTGCACAAAACCGTAT+TGG 0.496783 3_2:-78558596 Msa0427880:CDS
GTTGCTGAAGAAGCTGTCTC+AGG 0.501906 3_2:-78559573 Msa0427880:intron
CATACACTGTGTCTGTTCCC+TGG 0.502835 3_2:+78558480 None:intergenic
GGTATCACAAAGTCGGGTAA+AGG 0.503164 3_2:-78558060 Msa0427880:CDS
AGCTCGAGGTATTACAAGGC+CGG 0.505834 3_2:-78558349 Msa0427880:CDS
GCTCAAGGTATCACAAAGTC+GGG 0.506661 3_2:-78558066 Msa0427880:CDS
TCGGGTAAAGGAAGCGGAGT+TGG 0.507512 3_2:-78558048 Msa0427880:CDS
TATAGATGGAACGAAGGAGT+TGG 0.511290 3_2:-78560663 Msa0427880:intron
AACTGCTCACCGCCATCTTG+GGG 0.513505 3_2:+78557284 None:intergenic
CCAAAAGAGACGAGCTTGAG+TGG 0.515425 3_2:-78559114 Msa0427880:CDS
TTCAACTCAGATCGATCTGA+TGG 0.516137 3_2:-78558570 Msa0427880:CDS
TTGGTAGGTTCTATCCTACA+AGG 0.519182 3_2:-78557184 Msa0427880:three_prime_UTR
ATATGCGTAAATTCGGAGGC+AGG 0.521010 3_2:-78558703 Msa0427880:CDS
GGTATTACAAGGCCGGGTAA+AGG 0.522637 3_2:-78558342 Msa0427880:CDS
CACTAATGTTATGTCATGGA+CGG 0.525655 3_2:+78556954 None:intergenic
AATGATGCCAAAATATAAGA+TGG 0.526333 3_2:+78557471 None:intergenic
ACAGGAAGACATTGTAAAAG+AGG 0.528423 3_2:-78557150 Msa0427880:three_prime_UTR
GAGCCACGACATTCAATCTC+TGG 0.528546 3_2:+78558840 None:intergenic
AGGAAGAGATTGACAAAGAG+CGG 0.530251 3_2:-78558145 Msa0427880:CDS
AGACACTGAAATACTGCATA+GGG 0.534338 3_2:-78557757 Msa0427880:CDS
GCATCATTTGATGCAGGAGA+AGG 0.537249 3_2:-78557456 Msa0427880:three_prime_UTR
CATTCTCTGTCAACGATCGC+AGG 0.538257 3_2:-78558811 Msa0427880:CDS
TCTGAGTTGAAAGGCCAATA+CGG 0.539705 3_2:+78558582 None:intergenic
GGTAAAGGAAGCGGAGTTGG+AGG 0.539727 3_2:-78558045 Msa0427880:CDS
AGGAAGAGATTGAGAAAGAG+CGG 0.539922 3_2:-78557863 Msa0427880:CDS
CGGAAAACCATCGAATCTCT+AGG 0.540417 3_2:-78557398 Msa0427880:three_prime_UTR
ACCGCCATCTTGGGGAGCTG+GGG 0.541230 3_2:+78557292 None:intergenic
CTCTTCATTTGACGCAGCCA+CGG 0.542038 3_2:+78559689 None:intergenic
AGCTCAAGGTATCACAAAGT+CGG 0.543179 3_2:-78558067 Msa0427880:CDS
GGTTCAAAAGAATGATGCAT+TGG 0.543300 3_2:-78558441 Msa0427880:CDS
GGGAACTAAAGGATTGTATG+AGG 0.545681 3_2:-78559213 Msa0427880:CDS
GTGGAAAGTTACTGAGCTTG+AGG 0.546401 3_2:-78559095 Msa0427880:CDS
ATTATATTTAGGCTGGGAGA+AGG 0.546698 3_2:-78559326 Msa0427880:intron
GCAGGAGAAGGAAGTAGCAT+TGG 0.546961 3_2:-78557444 Msa0427880:three_prime_UTR
ACTAATGTTATGTCATGGAC+GGG 0.547239 3_2:+78556955 None:intergenic
CTGCTGTCCTAGAGATTCGA+TGG 0.547891 3_2:+78557391 None:intergenic
GAGGCTTCAGGATGTGGAGA+GGG 0.549030 3_2:-78559014 Msa0427880:CDS
AGACACAGTGTATGCTGAAG+TGG 0.551827 3_2:-78558471 Msa0427880:CDS
AGACTTCATACTTGATTCAG+AGG 0.557101 3_2:-78557345 Msa0427880:three_prime_UTR
ACAAAGTCGGGTAAAGGAAG+CGG 0.558654 3_2:-78558054 Msa0427880:CDS
AACCAAAGCATTATGACTCA+TGG 0.559723 3_2:-78558664 Msa0427880:CDS
GGTAAAGGAAGCAGAGTTGG+AGG 0.562324 3_2:-78558327 Msa0427880:CDS
GGAAGAGATTGACAAAGAGC+GGG 0.567707 3_2:-78558144 Msa0427880:CDS
CGTGGCTGCGTCAAATGAAG+AGG 0.568762 3_2:-78559688 Msa0427880:CDS
CCAACTCTGCTTCCTTTACC+CGG 0.569027 3_2:+78558330 None:intergenic
TGGCGAGTTAATGTTCAAGC+AGG 0.569151 3_2:-78557724 Msa0427880:CDS
GCTCGAGGTATTACAAGGCC+GGG 0.574482 3_2:-78558348 Msa0427880:CDS
TGCAGATAAACTCGAGCTAG+AGG 0.575538 3_2:-78558114 Msa0427880:CDS
GGAAGAGATTGAGAAAGAGC+GGG 0.579765 3_2:-78557862 Msa0427880:CDS
AAGACACTGAAATACTGCAT+AGG 0.582843 3_2:-78557758 Msa0427880:CDS
TGATTAGTTAGTCTCATAGA+CGG 0.583433 3_2:-78556896 Msa0427880:three_prime_UTR
ACTGAGAGCTGCTCAAACTG+AGG 0.583542 3_2:-78557919 Msa0427880:CDS
ACTGAGAGCTGCTCAAACTG+AGG 0.583542 3_2:-78558201 Msa0427880:CDS
GGAGGCAGGGAGATAAATGA+AGG 0.583949 3_2:-78558689 Msa0427880:CDS
ATGATTTCCTCGAAATGGAA+AGG 0.588479 3_2:-78558547 Msa0427880:CDS
TGAAGTCTTCCAATGTTGCA+AGG 0.589752 3_2:+78557360 None:intergenic
ACAACCCCAGCTCCCCAAGA+TGG 0.590488 3_2:-78557296 Msa0427880:three_prime_UTR
AAGCAGCTCGAGGTATTACA+AGG 0.592236 3_2:-78558353 Msa0427880:CDS
TGGAACGAAGGAGTTGGATG+TGG 0.592305 3_2:-78560657 Msa0427880:CDS
ACGGAAATGACTTCTGGAGA+TGG 0.595138 3_2:+78559708 None:intergenic
GAAACACTAATGTTATGTCA+TGG 0.597451 3_2:+78556950 None:intergenic
TCAGATCGATCTGAGTTGAA+AGG 0.597854 3_2:+78558573 None:intergenic
GCATCAGACCAACCAAATGT+TGG 0.607554 3_2:-78558503 Msa0427880:CDS
TAATGGAGAGAGGCTATTGG+TGG 0.608912 3_2:-78558735 Msa0427880:CDS
ATCTCCAGAAGTCATTTCCG+TGG 0.609448 3_2:-78559706 Msa0427880:CDS
AGAACCTACCAAAACTGAAG+TGG 0.609934 3_2:+78557195 None:intergenic
GACCAACCAAATGTTGGCCA+GGG 0.612070 3_2:-78558497 Msa0427880:CDS
GAAGTCTTCCAATGTTGCAA+GGG 0.615238 3_2:+78557361 None:intergenic
AGAGGCTTCAGGATGTGGAG+AGG 0.619121 3_2:-78559015 Msa0427880:CDS
TATTATTATAGATGGAACGA+AGG 0.620108 3_2:-78560669 Msa0427880:intron
GGCACTAATGTCTAAGAGAG+CGG 0.621884 3_2:+78559626 None:intergenic
TGGAGATGGAACAGTTTGAG+TGG 0.623998 3_2:+78559722 None:intergenic
AGATAAAATTGAGCTAGAGA+TGG 0.626676 3_2:-78558393 Msa0427880:CDS
GTATGCTGAAGTGGAAGCAT+TGG 0.628182 3_2:-78558462 Msa0427880:CDS
ACCCCAGCTCCCCAAGATGG+CGG 0.628407 3_2:-78557293 Msa0427880:three_prime_UTR
GAGAGCTGCTCAAACTGAGG+CGG 0.637369 3_2:-78558198 Msa0427880:CDS
TTAACTCTGATCTTCTGCAG+AGG 0.638024 3_2:-78559033 Msa0427880:CDS
TTTGGAGAGTATAACGAAGG+TGG 0.647288 3_2:-78558882 Msa0427880:CDS
TATGCGTAAATTCGGAGGCA+GGG 0.647344 3_2:-78558702 Msa0427880:CDS
AATTCTGTAATTGAAGCAGA+CGG 0.653774 3_2:+78558641 None:intergenic
TGCTGCAAAACAGCAAAATG+CGG 0.660097 3_2:-78559266 Msa0427880:CDS
AGATAAACTCGAGCTAGAGG+TGG 0.661721 3_2:-78558111 Msa0427880:CDS
TGAACTACAATCTCGACTCG+AGG 0.662262 3_2:-78558972 Msa0427880:CDS
TCAAGTTAGTCATCTTAATG+GGG 0.667984 3_2:-78559233 Msa0427880:CDS
AGTGATATGCGTAAATTCGG+AGG 0.673306 3_2:-78558707 Msa0427880:CDS
ACTGAAATACTGCATAGGGA+AGG 0.673392 3_2:-78557753 Msa0427880:CDS
GCATGTCAGATAATGGAGAG+AGG 0.673908 3_2:-78558745 Msa0427880:CDS
CGAGTGCCAAAAGCAGCTCG+AGG 0.681288 3_2:-78558363 Msa0427880:CDS
GTGCCAGAGATTGAATGTCG+TGG 0.689035 3_2:-78558843 Msa0427880:CDS
ACTAATGTCTAAGAGAGCGG+CGG 0.698941 3_2:+78559629 None:intergenic
GAAGAAGCTAGCGAAAATGG+AGG 0.702295 3_2:-78558417 Msa0427880:CDS
ATATTTGGAGAGTATAACGA+AGG 0.713817 3_2:-78558885 Msa0427880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGAATTGAATATTATTTA+AGG + chr3_2:78557984-78558003 None:intergenic 10.0%
!!! TATTTTTTTATAAACCATAA+CGG + chr3_2:78558623-78558642 None:intergenic 10.0%
!!! AGTTATTTTAGATATTAAGT+TGG - chr3_2:78557333-78557352 Msa0427880:three_prime_UTR 15.0%
!! TACTGAATTATTATTATAGA+TGG - chr3_2:78557363-78557382 Msa0427880:three_prime_UTR 15.0%
!!! TTACATGATTTTAAGTTTAT+AGG - chr3_2:78558140-78558159 Msa0427880:CDS 15.0%
!!! CATTGTTTTATTTTATTCTA+CGG - chr3_2:78558174-78558193 Msa0427880:CDS 15.0%
!!! GCTTAGAATTTACTTTTTAA+CGG + chr3_2:78557225-78557244 None:intergenic 20.0%
!!! TTAACTTCTATTTTCAATAC+AGG - chr3_2:78557526-78557545 Msa0427880:three_prime_UTR 20.0%
!!! ATTCAACAAGGTTTTTAATA+GGG + chr3_2:78558096-78558115 None:intergenic 20.0%
!! AATATTAATATAGCAGTCTT+TGG + chr3_2:78558692-78558711 None:intergenic 20.0%
!! ATATTTGATTATATTTAGGC+TGG - chr3_2:78558707-78558726 Msa0427880:CDS 20.0%
!! TATTTGATTATATTTAGGCT+GGG - chr3_2:78558708-78558727 Msa0427880:CDS 20.0%
!! TAAAATTCAAAACCATTGAA+TGG - chr3_2:78559094-78559113 Msa0427880:CDS 20.0%
!! AAAATTCAAAACCATTGAAT+GGG - chr3_2:78559095-78559114 Msa0427880:CDS 20.0%
!!! AGTTAAAATTTTAACATGTG+AGG - chr3_2:78560482-78560501 Msa0427880:intron 20.0%
!!! CAAAATTCCAAAATATTTTC+TGG + chr3_2:78560517-78560536 None:intergenic 20.0%
!!! CAGAAAATATTTTGGAATTT+TGG - chr3_2:78560515-78560534 Msa0427880:intron 20.0%
!!! TCATAAACCATCTTATATTT+TGG - chr3_2:78560562-78560581 Msa0427880:intron 20.0%
! AAAAACAAAAACATCATAGG+AGG + chr3_2:78557070-78557089 None:intergenic 25.0%
! CAGAAAAACAAAAACATCAT+AGG + chr3_2:78557073-78557092 None:intergenic 25.0%
!!! TTTACTTTTTAACGGTTATG+TGG + chr3_2:78557217-78557236 None:intergenic 25.0%
!! TCTTTTTATATATTAGCACC+AGG - chr3_2:78557286-78557305 Msa0427880:three_prime_UTR 25.0%
! TATTATTATAGATGGAACGA+AGG - chr3_2:78557371-78557390 Msa0427880:three_prime_UTR 25.0%
! TAGTAACTAGTAACCATATT+TGG - chr3_2:78557619-78557638 Msa0427880:three_prime_UTR 25.0%
!!! AGGTTGTCATTTTTGTTAAT+AGG - chr3_2:78557648-78557667 Msa0427880:exon 25.0%
! CTCTCATTAAAACAAAATTG+AGG - chr3_2:78557727-78557746 Msa0427880:CDS 25.0%
! AATGACATAATTCAATGTGT+CGG + chr3_2:78557879-78557898 None:intergenic 25.0%
!! GATTCAACAAGGTTTTTAAT+AGG + chr3_2:78558097-78558116 None:intergenic 25.0%
! AATGAAGGAGAAGTTTAAAA+TGG + chr3_2:78558507-78558526 None:intergenic 25.0%
!! TTTTAAACTTCTCCTTCATT+TGG - chr3_2:78558507-78558526 Msa0427880:CDS 25.0%
! AATCAGACCAAAAAACAAAA+AGG + chr3_2:78558576-78558595 None:intergenic 25.0%
! ACCTAATATCATCTAAACAT+AGG - chr3_2:78558654-78558673 Msa0427880:CDS 25.0%
! ACCTATGTTTAGATGATATT+AGG + chr3_2:78558658-78558677 None:intergenic 25.0%
! ATCTAAACATAGGTTATCAA+AGG - chr3_2:78558664-78558683 Msa0427880:CDS 25.0%
! ATCAAGTTAGTCATCTTAAT+GGG - chr3_2:78558806-78558825 Msa0427880:CDS 25.0%
! AATGATGCCAAAATATAAGA+TGG + chr3_2:78560572-78560591 None:intergenic 25.0%
! ACGTGTATAAATCTAAACTT+AGG - chr3_2:78560964-78560983 Msa0427880:intron 25.0%
!! CATAAATTTTTCCTTTTTGC+CGG - chr3_2:78561031-78561050 Msa0427880:intron 25.0%
!! ATAAATTTTTCCTTTTTGCC+GGG - chr3_2:78561032-78561051 Msa0427880:intron 25.0%
TGAATTCGAGAGTAAACAAA+AGG + chr3_2:78557119-78557138 None:intergenic 30.0%
!! TTTTGTTTACTCTCGAATTC+AGG - chr3_2:78557118-78557137 Msa0427880:three_prime_UTR 30.0%
TTTGTTTACTCTCGAATTCA+GGG - chr3_2:78557119-78557138 Msa0427880:three_prime_UTR 30.0%
AATAACGTAGCCAAAAAAAG+AGG + chr3_2:78557505-78557524 None:intergenic 30.0%
! CTTCTATTTTCAATACAGGA+AGG - chr3_2:78557530-78557549 Msa0427880:three_prime_UTR 30.0%
! TATTTTCAATACAGGAAGGA+GGG - chr3_2:78557534-78557553 Msa0427880:three_prime_UTR 30.0%
! AAGGTTTTTAATAGGGACTT+GGG + chr3_2:78558089-78558108 None:intergenic 30.0%
CTTGTATTCTTGATTCAACA+AGG + chr3_2:78558108-78558127 None:intergenic 30.0%
AGCAACAATTTGAACAATCA+GGG + chr3_2:78558242-78558261 None:intergenic 30.0%
AAGCAACAATTTGAACAATC+AGG + chr3_2:78558243-78558262 None:intergenic 30.0%
! AAATTGTTGCTTGTTTGAGA+CGG - chr3_2:78558251-78558270 Msa0427880:CDS 30.0%
TAAAATTGACAGCCAAATGA+AGG + chr3_2:78558522-78558541 None:intergenic 30.0%
!!! GTATCGACCTTTTTGTTTTT+TGG - chr3_2:78558566-78558585 Msa0427880:CDS 30.0%
GATCAAGTTAGTCATCTTAA+TGG - chr3_2:78558805-78558824 Msa0427880:CDS 30.0%
TCAAGTTAGTCATCTTAATG+GGG - chr3_2:78558807-78558826 Msa0427880:CDS 30.0%
TTGCAAACAACTCTTGTAAT+TGG - chr3_2:78558899-78558918 Msa0427880:CDS 30.0%
TGCAAACAACTCTTGTAATT+GGG - chr3_2:78558900-78558919 Msa0427880:CDS 30.0%
AAGAGAAAGCAAGCAATATT+TGG - chr3_2:78559140-78559159 Msa0427880:CDS 30.0%
! ATATTTGGAGAGTATAACGA+AGG - chr3_2:78559155-78559174 Msa0427880:CDS 30.0%
GAAAGTGATATGCGTAAATT+CGG - chr3_2:78559330-78559349 Msa0427880:intron 30.0%
AATTCTGTAATTGAAGCAGA+CGG + chr3_2:78559402-78559421 None:intergenic 30.0%
AGATAAAATTGAGCTAGAGA+TGG - chr3_2:78559647-78559666 Msa0427880:CDS 30.0%
!!! AGCTTTCTCATTTTTTTCTC+GGG + chr3_2:78559811-78559830 None:intergenic 30.0%
!!! CAGCTTTCTCATTTTTTTCT+CGG + chr3_2:78559812-78559831 None:intergenic 30.0%
!!! AGCATTCTCATTTTTTGCTT+GGG + chr3_2:78560093-78560112 None:intergenic 30.0%
!!! CCAAAATATTTTCTGGAATC+TGG + chr3_2:78560510-78560529 None:intergenic 30.0%
! CCAGATTCCAGAAAATATTT+TGG - chr3_2:78560507-78560526 Msa0427880:intron 30.0%
! CTAAATCCATCTATTAGCTT+TGG - chr3_2:78560816-78560835 Msa0427880:intron 30.0%
! CTTTTTCCAAAGCTAATAGA+TGG + chr3_2:78560825-78560844 None:intergenic 30.0%
GAAACACTAATGTTATGTCA+TGG + chr3_2:78561093-78561112 None:intergenic 30.0%
! TGATTAGTTAGTCTCATAGA+CGG - chr3_2:78561144-78561163 Msa0427880:intron 30.0%
! AATACGCTCTAGTTGATTCA+AGG + chr3_2:78556970-78556989 None:intergenic 35.0%
TTAAGACCCAAATCCACAAA+TGG - chr3_2:78557038-78557057 Msa0427880:three_prime_UTR 35.0%
CAAAAACATCATAGGAGGTA+GGG + chr3_2:78557065-78557084 None:intergenic 35.0%
ACAAAAACATCATAGGAGGT+AGG + chr3_2:78557066-78557085 None:intergenic 35.0%
AAAGGCAGGGAAATAATTGA+AGG + chr3_2:78557101-78557120 None:intergenic 35.0%
TAGAAGTTCATAACTTGACC+TGG + chr3_2:78557307-78557326 None:intergenic 35.0%
AAGATTATCTGCTCATGATC+AGG - chr3_2:78557477-78557496 Msa0427880:three_prime_UTR 35.0%
!!! TGATCAGGTACCTCTTTTTT+TGG - chr3_2:78557492-78557511 Msa0427880:three_prime_UTR 35.0%
! CTATTTTCAATACAGGAAGG+AGG - chr3_2:78557533-78557552 Msa0427880:three_prime_UTR 35.0%
! ATTTTCAATACAGGAAGGAG+GGG - chr3_2:78557535-78557554 Msa0427880:three_prime_UTR 35.0%
GTAACCATATTTGGAAGTGA+AGG - chr3_2:78557628-78557647 Msa0427880:three_prime_UTR 35.0%
ACAACCTTCACTTCCAAATA+TGG + chr3_2:78557635-78557654 None:intergenic 35.0%
AAGAAGAAGAAGAGAGATTG+AGG - chr3_2:78557677-78557696 Msa0427880:CDS 35.0%
AGAAGAAGAAGAGAGATTGA+GGG - chr3_2:78557678-78557697 Msa0427880:CDS 35.0%
! GAGGGAAAGCTAAAATGTTT+TGG - chr3_2:78557696-78557715 Msa0427880:CDS 35.0%
!! GCACCAATACTTTTGATTGA+AGG - chr3_2:78557815-78557834 Msa0427880:CDS 35.0%
! ACGCCTTCAATCAAAAGTAT+TGG + chr3_2:78557821-78557840 None:intergenic 35.0%
! CAAGGTTTTTAATAGGGACT+TGG + chr3_2:78558090-78558109 None:intergenic 35.0%
AGGGATCTCAAACTTAAAAG+CGG + chr3_2:78558223-78558242 None:intergenic 35.0%
CATTAGTGCCAAAGAAGATT+TGG - chr3_2:78558427-78558446 Msa0427880:CDS 35.0%
CTGCTTTACCAAATCTTCTT+TGG + chr3_2:78558438-78558457 None:intergenic 35.0%
ATTATATTTAGGCTGGGAGA+AGG - chr3_2:78558714-78558733 Msa0427880:CDS 35.0%
TCATCTTAATGGGGAACTAA+AGG - chr3_2:78558816-78558835 Msa0427880:CDS 35.0%
TGTGAATGACTCTGCATAAA+CGG + chr3_2:78559271-78559290 None:intergenic 35.0%
ACAGATAGCATGTCAGATAA+TGG - chr3_2:78559288-78559307 Msa0427880:CDS 35.0%
! AACCAAAGCATTATGACTCA+TGG - chr3_2:78559376-78559395 Msa0427880:intron 35.0%
GTCTGCTTCAATTACAGAAT+TGG - chr3_2:78559401-78559420 Msa0427880:intron 35.0%
ATGATTTCCTCGAAATGGAA+AGG - chr3_2:78559493-78559512 Msa0427880:intron 35.0%
GGTTCAAAAGAATGATGCAT+TGG - chr3_2:78559599-78559618 Msa0427880:CDS 35.0%
GATCTCAAAAATCTGTTCAC+TGG - chr3_2:78559872-78559891 Msa0427880:intron 35.0%
!!! CAGCATTCTCATTTTTTGCT+TGG + chr3_2:78560094-78560113 None:intergenic 35.0%
GATCTCAAAAATCTGTTCAC+TGG - chr3_2:78559872-78559891 Msa0427880:intron 35.0%
! TTCTTCCAACTTTTCACACT+TGG + chr3_2:78560225-78560244 None:intergenic 35.0%
AAGACACTGAAATACTGCAT+AGG - chr3_2:78560282-78560301 Msa0427880:intron 35.0%
AGACACTGAAATACTGCATA+GGG - chr3_2:78560283-78560302 Msa0427880:intron 35.0%
AATGTTCAAGCAGGTAAGTT+TGG - chr3_2:78560325-78560344 Msa0427880:intron 35.0%
! GCTAACAATCTCACTCTTTT+TGG - chr3_2:78560409-78560428 Msa0427880:intron 35.0%
! AACAATCTCACTCTTTTTGG+AGG - chr3_2:78560412-78560431 Msa0427880:intron 35.0%
!! ATTTTGGCATCATTTGATGC+AGG - chr3_2:78560578-78560597 Msa0427880:CDS 35.0%
AGACTTCATACTTGATTCAG+AGG - chr3_2:78560695-78560714 Msa0427880:intron 35.0%
ACAGGAAGACATTGTAAAAG+AGG - chr3_2:78560890-78560909 Msa0427880:intron 35.0%
ACTAATGTTATGTCATGGAC+GGG + chr3_2:78561088-78561107 None:intergenic 35.0%
CACTAATGTTATGTCATGGA+CGG + chr3_2:78561089-78561108 None:intergenic 35.0%
GAAATTAGAGAGCCAATGAG+CGG - chr3_2:78556898-78556917 Msa0427880:three_prime_UTR 40.0%
AAATTAGAGAGCCAATGAGC+GGG - chr3_2:78556899-78556918 Msa0427880:three_prime_UTR 40.0%
TAGGGACCATTTGTGGATTT+GGG + chr3_2:78557047-78557066 None:intergenic 40.0%
TCGAGAGTAAACAAAAGGCA+GGG + chr3_2:78557114-78557133 None:intergenic 40.0%
TTCGAGAGTAAACAAAAGGC+AGG + chr3_2:78557115-78557134 None:intergenic 40.0%
AACGGTTATGTGGAGTGAAA+GGG + chr3_2:78557207-78557226 None:intergenic 40.0%
TAACGGTTATGTGGAGTGAA+AGG + chr3_2:78557208-78557227 None:intergenic 40.0%
TATAGATGGAACGAAGGAGT+TGG - chr3_2:78557377-78557396 Msa0427880:three_prime_UTR 40.0%
AGAAGAACTGTGAGTTTCAC+TGG + chr3_2:78557434-78557453 None:intergenic 40.0%
AGCTAGCTGTTCTTTGTGTT+TGG - chr3_2:78557570-78557589 Msa0427880:three_prime_UTR 40.0%
GCTAGCTGTTCTTTGTGTTT+GGG - chr3_2:78557571-78557590 Msa0427880:three_prime_UTR 40.0%
CTAGCTGTTCTTTGTGTTTG+GGG - chr3_2:78557572-78557591 Msa0427880:three_prime_UTR 40.0%
CTAGTTACTACTACTACCCT+GGG + chr3_2:78557609-78557628 None:intergenic 40.0%
ACTAGTTACTACTACTACCC+TGG + chr3_2:78557610-78557629 None:intergenic 40.0%
!! CAAAAGTATTGGTGCTACAG+AGG + chr3_2:78557810-78557829 None:intergenic 40.0%
CAAGCTATGAAGCACAAACA+CGG + chr3_2:78557941-78557960 None:intergenic 40.0%
! ATGCCACTTAAATACTCCAC+CGG - chr3_2:78558014-78558033 Msa0427880:CDS 40.0%
! TAGTATGACTATGAGGTGTC+CGG + chr3_2:78558036-78558055 None:intergenic 40.0%
ATAGGGACTTGGGTATTATG+AGG + chr3_2:78558079-78558098 None:intergenic 40.0%
AACTTAAAAGCGGACAGAAC+AGG + chr3_2:78558213-78558232 None:intergenic 40.0%
ACTGATGTGCATACTCTAAC+TGG - chr3_2:78558380-78558399 Msa0427880:CDS 40.0%
! TTCAAGTTCTGTCTCCGTTA+TGG - chr3_2:78558606-78558625 Msa0427880:CDS 40.0%
TGCTGCAAAACAGCAAAATG+CGG - chr3_2:78558774-78558793 Msa0427880:CDS 40.0%
GGGAACTAAAGGATTGTATG+AGG - chr3_2:78558827-78558846 Msa0427880:CDS 40.0%
AGTTGTTTGCAACAGCTTCA+AGG + chr3_2:78558891-78558910 None:intergenic 40.0%
TTAACTCTGATCTTCTGCAG+AGG - chr3_2:78559007-78559026 Msa0427880:CDS 40.0%
! TTTGGAGAGTATAACGAAGG+TGG - chr3_2:78559158-78559177 Msa0427880:CDS 40.0%
!! AGATAATGGAGAGAGGCTAT+TGG - chr3_2:78559302-78559321 Msa0427880:CDS 40.0%
AGTGATATGCGTAAATTCGG+AGG - chr3_2:78559333-78559352 Msa0427880:intron 40.0%
! TCTGAGTTGAAAGGCCAATA+CGG + chr3_2:78559461-78559480 None:intergenic 40.0%
! TCAGATCGATCTGAGTTGAA+AGG + chr3_2:78559470-78559489 None:intergenic 40.0%
TTCAACTCAGATCGATCTGA+TGG - chr3_2:78559470-78559489 Msa0427880:intron 40.0%
GATGGATGATTTCCTCGAAA+TGG - chr3_2:78559488-78559507 Msa0427880:intron 40.0%
CTCAAAAATCTGTTCACTGG+AGG - chr3_2:78559875-78559894 Msa0427880:intron 40.0%
AGGAAGAGATTGACAAAGAG+CGG - chr3_2:78559895-78559914 Msa0427880:intron 40.0%
!! GTGATACCTTGAGCTGTTTT+TGG + chr3_2:78559968-78559987 None:intergenic 40.0%
! AGCTCAAGGTATCACAAAGT+CGG - chr3_2:78559973-78559992 Msa0427880:intron 40.0%
CTCAAAAATCTGTTCACTGG+AGG - chr3_2:78559875-78559894 Msa0427880:intron 40.0%
AGGAAGAGATTGAGAAAGAG+CGG - chr3_2:78560177-78560196 Msa0427880:intron 40.0%
! GGCTTTGTCTGCTGATAATT+TGG - chr3_2:78560199-78560218 Msa0427880:intron 40.0%
TTTGGCCAAGTGTGAAAAGT+TGG - chr3_2:78560217-78560236 Msa0427880:intron 40.0%
GCAGTATTTCAGTGTCTTGA+TGG + chr3_2:78560280-78560299 None:intergenic 40.0%
ACTGAAATACTGCATAGGGA+AGG - chr3_2:78560287-78560306 Msa0427880:intron 40.0%
!! ATCTCACTCTTTTTGGAGGA+TGG - chr3_2:78560416-78560435 Msa0427880:intron 40.0%
! CTAGTAGATTTTCTGAGTGC+CGG - chr3_2:78560622-78560641 Msa0427880:CDS 40.0%
! CTAGAGATTCGATGGTTTTC+CGG + chr3_2:78560644-78560663 None:intergenic 40.0%
GAAGTCTTCCAATGTTGCAA+GGG + chr3_2:78560682-78560701 None:intergenic 40.0%
TGAAGTCTTCCAATGTTGCA+AGG + chr3_2:78560683-78560702 None:intergenic 40.0%
ACTTGATTCAGAGGACACTA+TGG - chr3_2:78560704-78560723 Msa0427880:intron 40.0%
! GGAAAAAGCCACTTCAGTTT+TGG - chr3_2:78560837-78560856 Msa0427880:intron 40.0%
!! AAAGCCACTTCAGTTTTGGT+AGG - chr3_2:78560841-78560860 Msa0427880:intron 40.0%
AGAACCTACCAAAACTGAAG+TGG + chr3_2:78560848-78560867 None:intergenic 40.0%
TTGGTAGGTTCTATCCTACA+AGG - chr3_2:78560856-78560875 Msa0427880:intron 40.0%
! ATTTTTCCTTTTTGCCGGGA+AGG - chr3_2:78561036-78561055 Msa0427880:intron 40.0%
! CGCTCTAGTTGATTCAAGGT+GGG + chr3_2:78556966-78556985 None:intergenic 45.0%
! ACGCTCTAGTTGATTCAAGG+TGG + chr3_2:78556967-78556986 None:intergenic 45.0%
GTAGGGACCATTTGTGGATT+TGG + chr3_2:78557048-78557067 None:intergenic 45.0%
GTTTACTCTCGAATTCAGGG+TGG - chr3_2:78557122-78557141 Msa0427880:three_prime_UTR 45.0%
ATGTGGAGTGAAAGGGATGA+GGG + chr3_2:78557200-78557219 None:intergenic 45.0%
TATGTGGAGTGAAAGGGATG+AGG + chr3_2:78557201-78557220 None:intergenic 45.0%
TTGGGGTTATGTGAATTCCC+AGG - chr3_2:78557589-78557608 Msa0427880:three_prime_UTR 45.0%
TGGGGTTATGTGAATTCCCA+GGG - chr3_2:78557590-78557609 Msa0427880:three_prime_UTR 45.0%
!! ATTCAATGTGTCGGTGCTGT+AGG + chr3_2:78557870-78557889 None:intergenic 45.0%
ATCAGTGTATGTGTCATGCC+TGG - chr3_2:78557912-78557931 Msa0427880:CDS 45.0%
! TGTCCGGTGGAGTATTTAAG+TGG + chr3_2:78558020-78558039 None:intergenic 45.0%
CGTCGAGTAGTATGACTATG+AGG + chr3_2:78558043-78558062 None:intergenic 45.0%
TACTACTCGACGTCAGACTT+AGG - chr3_2:78558051-78558070 Msa0427880:CDS 45.0%
! ATGTTTTCTCCGTGCTGTAC+AGG - chr3_2:78558289-78558308 Msa0427880:CDS 45.0%
TGGCATATACCTGTACAGCA+CGG + chr3_2:78558301-78558320 None:intergenic 45.0%
TGGAGATGGAACAGTTTGAG+TGG + chr3_2:78558321-78558340 None:intergenic 45.0%
! ACGGAAATGACTTCTGGAGA+TGG + chr3_2:78558335-78558354 None:intergenic 45.0%
ATCTCCAGAAGTCATTTCCG+TGG - chr3_2:78558334-78558353 Msa0427880:CDS 45.0%
ACTAATGTCTAAGAGAGCGG+CGG + chr3_2:78558414-78558433 None:intergenic 45.0%
GGCACTAATGTCTAAGAGAG+CGG + chr3_2:78558417-78558436 None:intergenic 45.0%
GACAGCTTCTTCAGCAACTT+TGG + chr3_2:78558465-78558484 None:intergenic 45.0%
TTTATCCAGTGAGAAAGCCG+AGG - chr3_2:78558538-78558557 Msa0427880:CDS 45.0%
AAAGGTCGATACCAATGCCT+CGG + chr3_2:78558558-78558577 None:intergenic 45.0%
GTGGAAAGTTACTGAGCTTG+AGG - chr3_2:78558945-78558964 Msa0427880:CDS 45.0%
! TGAACTACAATCTCGACTCG+AGG - chr3_2:78559068-78559087 Msa0427880:CDS 45.0%
GGTGCTCAAATCCCATTCAA+TGG + chr3_2:78559109-78559128 None:intergenic 45.0%
GCTTTCTCTTTCTGCAGCTT+GGG + chr3_2:78559130-78559149 None:intergenic 45.0%
TGCTTTCTCTTTCTGCAGCT+TGG + chr3_2:78559131-78559150 None:intergenic 45.0%
!! GCATGTCAGATAATGGAGAG+AGG - chr3_2:78559295-78559314 Msa0427880:CDS 45.0%
TAATGGAGAGAGGCTATTGG+TGG - chr3_2:78559305-78559324 Msa0427880:CDS 45.0%
ATATGCGTAAATTCGGAGGC+AGG - chr3_2:78559337-78559356 Msa0427880:intron 45.0%
TATGCGTAAATTCGGAGGCA+GGG - chr3_2:78559338-78559357 Msa0427880:intron 45.0%
GGCCATGAGTCATAATGCTT+TGG + chr3_2:78559381-78559400 None:intergenic 45.0%
ACCACTGCACAAAACCGTAT+TGG - chr3_2:78559444-78559463 Msa0427880:intron 45.0%
GCATCAGACCAACCAAATGT+TGG - chr3_2:78559537-78559556 Msa0427880:intron 45.0%
AGACACAGTGTATGCTGAAG+TGG - chr3_2:78559569-78559588 Msa0427880:intron 45.0%
! GTATGCTGAAGTGGAAGCAT+TGG - chr3_2:78559578-78559597 Msa0427880:CDS 45.0%
GGAGAAGAAGCTAGCGAAAA+TGG - chr3_2:78559620-78559639 Msa0427880:CDS 45.0%
GAAGAAGCTAGCGAAAATGG+AGG - chr3_2:78559623-78559642 Msa0427880:CDS 45.0%
!! GTAATACCTCGAGCTGCTTT+TGG + chr3_2:78559686-78559705 None:intergenic 45.0%
! AAGCAGCTCGAGGTATTACA+AGG - chr3_2:78559687-78559706 Msa0427880:CDS 45.0%
GGAAGAGATTGACAAAGAGC+GGG - chr3_2:78559896-78559915 Msa0427880:intron 45.0%
TGCAGATAAACTCGAGCTAG+AGG - chr3_2:78559926-78559945 Msa0427880:intron 45.0%
AGATAAACTCGAGCTAGAGG+TGG - chr3_2:78559929-78559948 Msa0427880:intron 45.0%
! GCTCAAGGTATCACAAAGTC+GGG - chr3_2:78559974-78559993 Msa0427880:intron 45.0%
GGTATCACAAAGTCGGGTAA+AGG - chr3_2:78559980-78559999 Msa0427880:intron 45.0%
ACAAAGTCGGGTAAAGGAAG+CGG - chr3_2:78559986-78560005 Msa0427880:intron 45.0%
GGAAGAGATTGAGAAAGAGC+GGG - chr3_2:78560178-78560197 Msa0427880:intron 45.0%
!! CTGCATAGGGAAGGTATTGA+TGG - chr3_2:78560296-78560315 Msa0427880:intron 45.0%
TGGCGAGTTAATGTTCAAGC+AGG - chr3_2:78560316-78560335 Msa0427880:intron 45.0%
GCATCATTTGATGCAGGAGA+AGG - chr3_2:78560584-78560603 Msa0427880:CDS 45.0%
CGGAAAACCATCGAATCTCT+AGG - chr3_2:78560642-78560661 Msa0427880:CDS 45.0%
GTTGAAGTCCCTTGCAACAT+TGG - chr3_2:78560671-78560690 Msa0427880:intron 45.0%
TGTTCTGCTCAAGACCTTGT+AGG + chr3_2:78560873-78560892 None:intergenic 45.0%
TACAAGGTCTTGAGCAGAAC+AGG - chr3_2:78560872-78560891 Msa0427880:intron 45.0%
GCATGATTCAAACTCCTTCC+CGG + chr3_2:78561053-78561072 None:intergenic 45.0%
!! ATTAATATTTGATTATATTT+AGG - chr3_2:78558703-78558722 Msa0427880:CDS 5.0%
TAGGAGGTAGGGACCATTTG+TGG + chr3_2:78557054-78557073 None:intergenic 50.0%
TACTCTCGAATTCAGGGTGG+AGG - chr3_2:78557125-78557144 Msa0427880:three_prime_UTR 50.0%
TGGAACGAAGGAGTTGGATG+TGG - chr3_2:78557383-78557402 Msa0427880:three_prime_UTR 50.0%
GAACAGCTAGCTACCTACCT+AGG + chr3_2:78557562-78557581 None:intergenic 50.0%
! TTGAAGGCGTGTCTGATGTC+TGG - chr3_2:78557831-78557850 Msa0427880:CDS 50.0%
GCTATGAAGCACAAACACGG+AGG + chr3_2:78557938-78557957 None:intergenic 50.0%
! TATGACTATGAGGTGTCCGG+TGG + chr3_2:78558033-78558052 None:intergenic 50.0%
CTCTTCATTTGACGCAGCCA+CGG + chr3_2:78558354-78558373 None:intergenic 50.0%
GTTGCTGAAGAAGCTGTCTC+AGG - chr3_2:78558467-78558486 Msa0427880:CDS 50.0%
! CCACTCAAGCTCGTCTCTTT+TGG + chr3_2:78558929-78558948 None:intergenic 50.0%
CCAAAAGAGACGAGCTTGAG+TGG - chr3_2:78558926-78558945 Msa0427880:CDS 50.0%
TGATCTTCTGCAGAGGCTTC+AGG - chr3_2:78559014-78559033 Msa0427880:CDS 50.0%
GTGCCAGAGATTGAATGTCG+TGG - chr3_2:78559197-78559216 Msa0427880:CDS 50.0%
GAGCCACGACATTCAATCTC+TGG + chr3_2:78559203-78559222 None:intergenic 50.0%
CATTCTCTGTCAACGATCGC+AGG - chr3_2:78559229-78559248 Msa0427880:CDS 50.0%
GGAGGCAGGGAGATAAATGA+AGG - chr3_2:78559351-78559370 Msa0427880:intron 50.0%
!! GCCAATACGGTTTTGTGCAG+TGG + chr3_2:78559448-78559467 None:intergenic 50.0%
CAGCAAGCCTTTCCATTTCG+AGG + chr3_2:78559503-78559522 None:intergenic 50.0%
!! GGTTGGTCTGATGCAGTATC+TGG + chr3_2:78559531-78559550 None:intergenic 50.0%
AGACCAACCAAATGTTGGCC+AGG - chr3_2:78559542-78559561 Msa0427880:intron 50.0%
GACCAACCAAATGTTGGCCA+GGG - chr3_2:78559543-78559562 Msa0427880:intron 50.0%
TTCCCTGGCCAACATTTGGT+TGG + chr3_2:78559548-78559567 None:intergenic 50.0%
TCTGTTCCCTGGCCAACATT+TGG + chr3_2:78559552-78559571 None:intergenic 50.0%
CATACACTGTGTCTGTTCCC+TGG + chr3_2:78559563-78559582 None:intergenic 50.0%
! AGCTCGAGGTATTACAAGGC+CGG - chr3_2:78559691-78559710 Msa0427880:CDS 50.0%
GGTATTACAAGGCCGGGTAA+AGG - chr3_2:78559698-78559717 Msa0427880:CDS 50.0%
CCAACTCTGCTTCCTTTACC+CGG + chr3_2:78559713-78559732 None:intergenic 50.0%
GGTAAAGGAAGCAGAGTTGG+AGG - chr3_2:78559713-78559732 Msa0427880:CDS 50.0%
ACTGAGAGCTGCTCAAACTG+AGG - chr3_2:78559839-78559858 Msa0427880:intron 50.0%
CGAGTGCCAAAAACAGCTCA+AGG - chr3_2:78559959-78559978 Msa0427880:intron 50.0%
ACTGAGAGCTGCTCAAACTG+AGG - chr3_2:78559839-78559858 Msa0427880:intron 50.0%
GCAGGAGAAGGAAGTAGCAT+TGG - chr3_2:78560596-78560615 Msa0427880:CDS 50.0%
CTGCTGTCCTAGAGATTCGA+TGG + chr3_2:78560652-78560671 None:intergenic 50.0%
CAAACTCCTTCCCGGCAAAA+AGG + chr3_2:78561045-78561064 None:intergenic 50.0%
TGCGCTTAGTTCCCGCTCAT+TGG + chr3_2:78556913-78556932 None:intergenic 55.0%
! TCAGGGTGGAGGCGTGAAAT+TGG - chr3_2:78557136-78557155 Msa0427880:three_prime_UTR 55.0%
! CAGGGTGGAGGCGTGAAATT+GGG - chr3_2:78557137-78557156 Msa0427880:three_prime_UTR 55.0%
! AGGGTGGAGGCGTGAAATTG+GGG - chr3_2:78557138-78557157 Msa0427880:three_prime_UTR 55.0%
ATACAGGAAGGAGGGGTCCT+AGG - chr3_2:78557542-78557561 Msa0427880:three_prime_UTR 55.0%
GCAGCCACGGAAATGACTTC+TGG + chr3_2:78558341-78558360 None:intergenic 55.0%
CGTGGCTGCGTCAAATGAAG+AGG - chr3_2:78558352-78558371 Msa0427880:CDS 55.0%
CAATGCCTCGGCTTTCTCAC+TGG + chr3_2:78558546-78558565 None:intergenic 55.0%
CAGTGAGAAAGCCGAGGCAT+TGG - chr3_2:78558544-78558563 Msa0427880:CDS 55.0%
TCTGCAGAGGCTTCAGGATG+TGG - chr3_2:78559020-78559039 Msa0427880:CDS 55.0%
AGAGGCTTCAGGATGTGGAG+AGG - chr3_2:78559025-78559044 Msa0427880:CDS 55.0%
GAGGCTTCAGGATGTGGAGA+GGG - chr3_2:78559026-78559045 Msa0427880:CDS 55.0%
! GCTCGAGGTATTACAAGGCC+GGG - chr3_2:78559692-78559711 Msa0427880:CDS 55.0%
CCGGGTAAAGGAAGCAGAGT+TGG - chr3_2:78559710-78559729 Msa0427880:CDS 55.0%
GAGAGCTGCTCAAACTGAGG+CGG - chr3_2:78559842-78559861 Msa0427880:intron 55.0%
TCGGGTAAAGGAAGCGGAGT+TGG - chr3_2:78559992-78560011 Msa0427880:intron 55.0%
GGTAAAGGAAGCGGAGTTGG+AGG - chr3_2:78559995-78560014 Msa0427880:intron 55.0%
AACTGCTCACCGCCATCTTG+GGG + chr3_2:78560759-78560778 None:intergenic 55.0%
CAACTGCTCACCGCCATCTT+GGG + chr3_2:78560760-78560779 None:intergenic 55.0%
TCAACTGCTCACCGCCATCT+TGG + chr3_2:78560761-78560780 None:intergenic 55.0%
AGGAAGGAGGGGTCCTAGGT+AGG - chr3_2:78557546-78557565 Msa0427880:three_prime_UTR 60.0%
GAAGCACAAACACGGAGGCC+AGG + chr3_2:78557933-78557952 None:intergenic 60.0%
CGAGTGCCAAAAGCAGCTCG+AGG - chr3_2:78559677-78559696 Msa0427880:CDS 60.0%
ACAACCCCAGCTCCCCAAGA+TGG - chr3_2:78560744-78560763 Msa0427880:intron 60.0%
ACCCCAGCTCCCCAAGATGG+CGG - chr3_2:78560747-78560766 Msa0427880:intron 65.0%
ACCGCCATCTTGGGGAGCTG+GGG + chr3_2:78560751-78560770 None:intergenic 65.0%
CACCGCCATCTTGGGGAGCT+GGG + chr3_2:78560752-78560771 None:intergenic 65.0%
TCACCGCCATCTTGGGGAGC+TGG + chr3_2:78560753-78560772 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 78556887 78561175 78556887 ID=Msa0427880;Name=Msa0427880
chr3_2 mRNA 78556887 78561175 78556887 ID=Msa0427880-mRNA-1;Parent=Msa0427880;Name=Msa0427880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.16|0.42|0.71|1|1|7|775|666
chr3_2 exon 78556887 78559337 78556887 ID=Msa0427880-mRNA-1:exon:20857;Parent=Msa0427880-mRNA-1
chr3_2 exon 78559574 78559751 78559574 ID=Msa0427880-mRNA-1:exon:20856;Parent=Msa0427880-mRNA-1
chr3_2 exon 78560506 78560514 78560506 ID=Msa0427880-mRNA-1:exon:20855;Parent=Msa0427880-mRNA-1
chr3_2 exon 78560564 78560680 78560564 ID=Msa0427880-mRNA-1:exon:20854;Parent=Msa0427880-mRNA-1
chr3_2 exon 78560705 78560710 78560705 ID=Msa0427880-mRNA-1:exon:20853;Parent=Msa0427880-mRNA-1
chr3_2 exon 78560755 78560760 78560755 ID=Msa0427880-mRNA-1:exon:20852;Parent=Msa0427880-mRNA-1
chr3_2 exon 78561167 78561175 78561167 ID=Msa0427880-mRNA-1:exon:20851;Parent=Msa0427880-mRNA-1
chr3_2 CDS 78561167 78561175 78561167 ID=Msa0427880-mRNA-1:cds;Parent=Msa0427880-mRNA-1
chr3_2 CDS 78560755 78560760 78560755 ID=Msa0427880-mRNA-1:cds;Parent=Msa0427880-mRNA-1
chr3_2 CDS 78560705 78560710 78560705 ID=Msa0427880-mRNA-1:cds;Parent=Msa0427880-mRNA-1
chr3_2 CDS 78560564 78560680 78560564 ID=Msa0427880-mRNA-1:cds;Parent=Msa0427880-mRNA-1
chr3_2 CDS 78560506 78560514 78560506 ID=Msa0427880-mRNA-1:cds;Parent=Msa0427880-mRNA-1
chr3_2 CDS 78559574 78559751 78559574 ID=Msa0427880-mRNA-1:cds;Parent=Msa0427880-mRNA-1
chr3_2 CDS 78557662 78559337 78557662 ID=Msa0427880-mRNA-1:cds;Parent=Msa0427880-mRNA-1
chr3_2 three_prime_UTR 78556887 78557661 78556887 ID=Msa0427880-mRNA-1:three_prime_utr;Parent=Msa0427880-mRNA-1
Gene Sequence

>Msa0427880

ATGGCAGTACACCAGTTGGATATGGAACGAAGGAGTTGGATGTGGCATAGTAAGTCATTTGAGAAAAGTTCCAGTGAAACTCACAGTTCTTCTGACTCAATGTCATCTCATTCTGAAAGATTATCTGCTCATGATCAGGAAGGAGGGGTATATGCCACTCAAACTGTTCCATCTCCAGAAGTCATTTCCGTGGCTGCGTCAAATGAAGAGGTTGTTACTGATGTGCATACTCTAACTGGAAAATTATCCGCCGCTCTCTTAGACATTAGTGCCAAAGAAGATTTGGTAAAGCAGAATGCCAAAGTTGCTGAAGAAGCTGTCTCAGGCTGGGAGAAGGCTGAAAATGAAGTGATGACTTTAAAACAGCAACTTGATGCTGCAAAACAGCAAAATGCGGTTCTTGAAGATCAAGTTAGTCATCTTAATGGGGAACTAAAGGATTGTATGAGGCAGCTTCGACAAGCTAGAGAAGAGCAAGAGCAAAAGATCCTTGAAGCTGTTGCAAACAACTCTTGTAATTGGGAATCCAAAAGAGACGAGCTTGAGTGGAAAGTTACTGAGCTTGAGGTTCAACTTCAAACAGCTAAAGAAGATGCTGCTACATCAGTTAACTCTGATCTTCTGCAGAGGCTTCAGGATGTGGAGAGGGAGAATTCAAGTCTTAAAATTGAACTACAATCTCGACTCGAGGAACTAAAATTCAAAACCATTGAATGGGATTTGAGCACCCAAGCTGCAGAAAGAGAAAGCAAGCAATATTTGGAGAGTATAACGAAGGTGGCTAAGCTTGAAGCTGAGTGCCAGAGATTGAATGTCGTGGCTCGCAAAACATTCTCTGTCAACGATCGCAGGTCTTTGACTTACTCTTCCGTTTATGCAGAGTCATTCACAGATAGCATGTCAGATAATGGAGAGAGGCTATTGGTGGTTGAAAGTGATATGCGTAAATTCGGAGGCAGGGAGATAAATGAAGGTGAACCAAAGCATTATGACTCATGGCCGTCTGCTTCAATTACAGAATTGGATCAATTTAAGAATGAAAACACCACTGCACAAAACCGTATTGGCCTTTCAACTCAGATCGATCTGATGGATGATTTCCTCGAAATGGAAAGGCTTGCTGCATTGCCAGATACTGCATCAGACCAACCAAATGTTGGCCAGGGAACAGACACAGTGTATGCTGAAGTGGAAGCATTGGTTCAAAAGAATGATGCATTGGAGAAGAAGCTAGCGAAAATGGAGGCAGATAAAATTGAGCTAGAGATGGATTTAAACGAGTGCCAAAAGCAGCTCGAGGTATTACAAGGCCGGGTAAAGGAAGCAGAGTTGGAGGTAATTGAGCTTCAAACTCAGTTAGCTTTTGCAAATAAATCGTACGAAGAAGAATATGAAGAACTTAAAGCATCCCGAGAAAAAAATGAGAAAGCTGAGTCAAAACTGAGAGCTGCTCAAACTGAGGCGGAAGAATCGATCTCAAAAATCTGTTCACTGGAGGAAGAGATTGACAAAGAGCGGGCTTTGTCTGCAGATAAACTCGAGCTAGAGGTGGATTTAAACGAGTGCCAAAAACAGCTCAAGGTATCACAAAGTCGGGTAAAGGAAGCGGAGTTGGAGGCGATTGAGTTTCAAAAACAGTTAGTTGTTGCAAATAAATCGAACGAAGAAGAATATGAAGAACTAAAAGTATCCCAAGCAAAAAATGAGAATGCTGAGTCAAAACTGAGAGCTGCTCAAACTGAGGCAGAAGAATTGATCTCAAAAATCTGTTCACTGGAGGAAGAGATTGAGAAAGAGCGGGCTTTGTCTGCTGATAATTTGGCCAAGTGTGAAAAGTTGGAAGAAGAGCTTTTGAGAGTGAAGCAAGAAACTCAACTCCATCAAGACACTGAAATACTGCATAGGGAAGGTATTGATGGCGAGTTAATGTTCAAGCAGGTAAGTTTGGTAATACACAATGAGAAATCTATAATCTTATGTACTGCTATGTATTTTGCTTAA
Protein sequence

>Msa0427880

MAVHQLDMERRSWMWHSKSFEKSSSETHSSSDSMSSHSERLSAHDQEGGVYATQTVPSPEVISVAASNEEVVTDVHTLTGKLSAALLDISAKEDLVKQNAKVAEEAVSGWEKAENEVMTLKQQLDAAKQQNAVLEDQVSHLNGELKDCMRQLRQAREEQEQKILEAVANNSCNWESKRDELEWKVTELEVQLQTAKEDAATSVNSDLLQRLQDVERENSSLKIELQSRLEELKFKTIEWDLSTQAAERESKQYLESITKVAKLEAECQRLNVVARKTFSVNDRRSLTYSSVYAESFTDSMSDNGERLLVVESDMRKFGGREINEGEPKHYDSWPSASITELDQFKNENTTAQNRIGLSTQIDLMDDFLEMERLAALPDTASDQPNVGQGTDTVYAEVEALVQKNDALEKKLAKMEADKIELEMDLNECQKQLEVLQGRVKEAELEVIELQTQLAFANKSYEEEYEELKASREKNEKAESKLRAAQTEAEESISKICSLEEEIDKERALSADKLELEVDLNECQKQLKVSQSRVKEAELEAIEFQKQLVVANKSNEEEYEELKVSQAKNENAESKLRAAQTEAEELISKICSLEEEIEKERALSADNLAKCEKLEEELLRVKQETQLHQDTEILHREGIDGELMFKQVSLVIHNEKSIILCTAMYFA*