Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317100 | sp|Q96321|IMPA1_ARATH | 69.476 | 439 | 131 | 2 | 16 | 451 | 94 | 532 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317100 | A0A072TN50 | 95.581 | 430 | 19 | 0 | 24 | 453 | 19 | 448 | 0.0 | 843 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046100 | Msa1317100 | -0.815911 | 7.250928e-52 | -8.615850e-47 |
| Msa0101880 | Msa1317100 | -0.833054 | 6.647212e-56 | -8.615850e-47 |
| Msa0105420 | Msa1317100 | -0.812439 | 4.236888e-51 | -8.615850e-47 |
| Msa0114540 | Msa1317100 | 0.803872 | 2.832713e-49 | -8.615850e-47 |
| Msa0735620 | Msa1317100 | 0.806013 | 1.010662e-49 | -8.615850e-47 |
| Msa0756630 | Msa1317100 | 0.801467 | 8.882590e-49 | -8.615850e-47 |
| Msa1236100 | Msa1317100 | -0.814658 | 1.377027e-51 | -8.615850e-47 |
| Msa1269580 | Msa1317100 | 0.809918 | 1.492291e-50 | -8.615850e-47 |
| Msa1317100 | Msa1364470 | 0.808044 | 3.758315e-50 | -8.615850e-47 |
| Msa1317100 | Msa1377540 | 0.805398 | 1.361213e-49 | -8.615850e-47 |
| Msa1317100 | Msa1423880 | -0.801595 | 8.360000e-49 | -8.615850e-47 |
| Msa1317100 | Msa1429360 | 0.806137 | 9.519922e-50 | -8.615850e-47 |
| Msa0414950 | Msa1317100 | 0.804302 | 2.306027e-49 | -8.615850e-47 |
| Msa0436280 | Msa1317100 | 0.807274 | 5.475595e-50 | -8.615850e-47 |
| Msa1049510 | Msa1317100 | 0.811452 | 6.952981e-51 | -8.615850e-47 |
| Msa0334040 | Msa1317100 | -0.809193 | 2.135897e-50 | -8.615850e-47 |
| Msa1111810 | Msa1317100 | -0.809690 | 1.670650e-50 | -8.615850e-47 |
| Msa1127890 | Msa1317100 | -0.801849 | 7.416312e-49 | -8.615850e-47 |
| Msa0574890 | Msa1317100 | -0.811791 | 5.865642e-51 | -8.615850e-47 |
| Msa0588230 | Msa1317100 | -0.803675 | 3.113582e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317100 | MtrunA17_Chr8g0346871 | 95.571 | 429 | 19 | 0 | 25 | 453 | 10 | 438 | 0.0 | 840 |
| Msa1317100 | MtrunA17_Chr2g0294881 | 78.851 | 435 | 92 | 0 | 16 | 450 | 95 | 529 | 0.0 | 703 |
| Msa1317100 | MtrunA17_Chr1g0192541 | 72.374 | 438 | 120 | 1 | 16 | 452 | 96 | 533 | 0.0 | 649 |
| Msa1317100 | MtrunA17_Chr7g0271871 | 69.196 | 448 | 132 | 2 | 5 | 451 | 90 | 532 | 0.0 | 631 |
| Msa1317100 | MtrunA17_Chr4g0074371 | 73.839 | 409 | 107 | 0 | 16 | 424 | 18 | 426 | 0.0 | 620 |
| Msa1317100 | MtrunA17_Chr4g0075701 | 68.793 | 439 | 121 | 4 | 7 | 431 | 6 | 442 | 0.0 | 593 |
| Msa1317100 | MtrunA17_Chr4g0075691 | 73.430 | 414 | 109 | 1 | 16 | 428 | 15 | 428 | 0.0 | 586 |
| Msa1317100 | MtrunA17_Chr4g0068051 | 67.742 | 434 | 134 | 3 | 18 | 450 | 100 | 528 | 0.0 | 585 |
| Msa1317100 | MtrunA17_Chr4g0074081 | 64.877 | 447 | 115 | 4 | 16 | 424 | 18 | 460 | 0.0 | 528 |
| Msa1317100 | MtrunA17_Chr1g0174791 | 62.799 | 293 | 106 | 3 | 128 | 417 | 1 | 293 | 3.06e-120 | 353 |
| Msa1317100 | MtrunA17_Chr4g0004921 | 68.364 | 275 | 38 | 4 | 181 | 453 | 1 | 228 | 5.87e-119 | 347 |
| Msa1317100 | MtrunA17_Chr7g0271821 | 47.794 | 408 | 206 | 6 | 16 | 419 | 146 | 550 | 1.10e-110 | 337 |
| Msa1317100 | MtrunA17_Chr7g0272761 | 45.567 | 406 | 193 | 9 | 16 | 416 | 103 | 485 | 2.21e-93 | 291 |
| Msa1317100 | MtrunA17_Chr7g0271831 | 43.873 | 408 | 204 | 8 | 16 | 419 | 18 | 404 | 4.23e-92 | 285 |
| Msa1317100 | MtrunA17_Chr4g0004931 | 84.868 | 152 | 9 | 1 | 23 | 174 | 4 | 141 | 9.13e-86 | 259 |
| Msa1317100 | MtrunA17_Chr4g0071961 | 77.703 | 148 | 33 | 0 | 284 | 431 | 2 | 149 | 1.35e-71 | 226 |
| Msa1317100 | MtrunA17_Chr4g0075651 | 75.887 | 141 | 34 | 0 | 286 | 426 | 8 | 148 | 4.96e-68 | 213 |
| Msa1317100 | MtrunA17_Chr4g0075601 | 69.672 | 122 | 24 | 1 | 284 | 392 | 1 | 122 | 9.50e-46 | 155 |
| Msa1317100 | MtrunA17_Chr4g0071971 | 69.565 | 115 | 28 | 2 | 172 | 285 | 5 | 113 | 2.25e-43 | 149 |
| Msa1317100 | MtrunA17_Chr1g0181541 | 28.538 | 424 | 271 | 9 | 17 | 421 | 106 | 516 | 5.59e-40 | 150 |
| Msa1317100 | MtrunA17_Chr4g0075631 | 90.196 | 51 | 5 | 0 | 139 | 189 | 1 | 51 | 1.26e-25 | 99.0 |
| Msa1317100 | MtrunA17_Chr4g0069541 | 58.228 | 79 | 32 | 1 | 223 | 301 | 37 | 114 | 2.40e-22 | 93.2 |
| Msa1317100 | MtrunA17_Chr4g0075621 | 50.000 | 82 | 41 | 0 | 16 | 97 | 18 | 99 | 7.91e-20 | 85.1 |
| Msa1317100 | MtrunA17_Chr4g0075641 | 38.926 | 149 | 71 | 4 | 196 | 328 | 2 | 146 | 3.25e-17 | 78.6 |
| Msa1317100 | MtrunA17_Chr4g0075641 | 66.000 | 50 | 17 | 0 | 238 | 287 | 99 | 148 | 2.06e-14 | 70.5 |
| Msa1317100 | MtrunA17_Chr4g0071981 | 60.784 | 51 | 20 | 0 | 30 | 80 | 33 | 83 | 1.51e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317100 | AT3G06720.1 | 69.476 | 439 | 131 | 2 | 16 | 451 | 94 | 532 | 0.0 | 620 |
| Msa1317100 | AT3G06720.2 | 69.476 | 439 | 131 | 2 | 16 | 451 | 94 | 532 | 0.0 | 620 |
| Msa1317100 | AT4G16143.2 | 70.642 | 436 | 127 | 1 | 16 | 450 | 99 | 534 | 0.0 | 608 |
| Msa1317100 | AT4G16143.1 | 70.642 | 436 | 127 | 1 | 16 | 450 | 99 | 534 | 0.0 | 608 |
| Msa1317100 | AT1G09270.2 | 64.465 | 439 | 152 | 2 | 16 | 451 | 101 | 538 | 0.0 | 558 |
| Msa1317100 | AT1G09270.1 | 64.465 | 439 | 152 | 2 | 16 | 451 | 101 | 538 | 0.0 | 558 |
| Msa1317100 | AT1G09270.3 | 64.465 | 439 | 152 | 2 | 16 | 451 | 19 | 456 | 0.0 | 556 |
| Msa1317100 | AT4G02150.1 | 64.516 | 434 | 151 | 2 | 18 | 450 | 99 | 530 | 0.0 | 555 |
| Msa1317100 | AT1G02690.1 | 62.500 | 440 | 160 | 1 | 16 | 450 | 98 | 537 | 0.0 | 546 |
| Msa1317100 | AT1G02690.2 | 62.358 | 441 | 160 | 2 | 16 | 450 | 98 | 538 | 0.0 | 542 |
| Msa1317100 | AT3G05720.1 | 58.734 | 395 | 156 | 1 | 30 | 417 | 96 | 490 | 2.60e-157 | 456 |
| Msa1317100 | AT3G05720.2 | 58.734 | 395 | 156 | 1 | 30 | 417 | 96 | 490 | 2.60e-157 | 456 |
| Msa1317100 | AT5G49310.1 | 57.377 | 427 | 173 | 4 | 16 | 436 | 92 | 515 | 1.16e-156 | 454 |
| Msa1317100 | AT4G02150.2 | 65.273 | 311 | 108 | 0 | 18 | 328 | 99 | 409 | 1.08e-142 | 414 |
| Msa1317100 | AT5G52000.1 | 48.529 | 408 | 200 | 4 | 11 | 417 | 23 | 421 | 3.36e-117 | 350 |
| Msa1317100 | AT5G49305.5 | 40.909 | 396 | 180 | 6 | 32 | 426 | 40 | 382 | 3.53e-79 | 251 |
| Msa1317100 | AT5G49305.3 | 40.909 | 396 | 180 | 6 | 32 | 426 | 40 | 382 | 3.53e-79 | 251 |
| Msa1317100 | AT5G49305.4 | 40.909 | 396 | 180 | 6 | 32 | 426 | 40 | 382 | 3.53e-79 | 251 |
| Msa1317100 | AT5G49305.1 | 40.909 | 396 | 180 | 6 | 32 | 426 | 40 | 382 | 3.53e-79 | 251 |
| Msa1317100 | AT5G49305.2 | 40.909 | 396 | 180 | 6 | 32 | 426 | 40 | 382 | 3.53e-79 | 251 |
| Msa1317100 | AT1G32880.1 | 55.102 | 147 | 61 | 3 | 283 | 427 | 40 | 183 | 2.21e-44 | 154 |
| Msa1317100 | AT5G03070.1 | 26.118 | 425 | 280 | 9 | 17 | 421 | 106 | 516 | 7.98e-34 | 133 |
| Msa1317100 | AT5G13060.1 | 23.729 | 295 | 172 | 6 | 71 | 351 | 113 | 368 | 1.09e-12 | 70.9 |
Find 143 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATTCTCAATCGTAAATT+AGG | 0.088947 | 8_4:-18140814 | Msa1317100:five_prime_UTR |
| GCGCTTAATGTTAGGGTTTA+GGG | 0.204696 | 8_4:-18137790 | Msa1317100:three_prime_UTR |
| TTGTTAATGCGCTTAATGTT+AGG | 0.253160 | 8_4:-18137798 | Msa1317100:three_prime_UTR |
| TGCGCTTAATGTTAGGGTTT+AGG | 0.260376 | 8_4:-18137791 | Msa1317100:three_prime_UTR |
| TCAAAATTCTTGAGACATAT+TGG | 0.262172 | 8_4:-18138064 | Msa1317100:CDS |
| AAGTTCATCAATCGTAAAAC+TGG | 0.263110 | 8_4:+18140583 | None:intergenic |
| AATAGTTTCCTCATGATTAT+AGG | 0.264524 | 8_4:+18139064 | None:intergenic |
| TGTTGTTGTTACAAGGTATT+TGG | 0.279052 | 8_4:-18138321 | Msa1317100:intron |
| TGCGGAGTTTGACACTTTAA+AGG | 0.284046 | 8_4:-18138491 | Msa1317100:CDS |
| GTAAAAGTAACCATCAATTT+AGG | 0.313231 | 8_4:-18140779 | Msa1317100:five_prime_UTR |
| CAATTCTCAATCGTAAATTA+GGG | 0.324704 | 8_4:-18140813 | Msa1317100:five_prime_UTR |
| TGCCAGGACTTCTTCATCAT+TGG | 0.335037 | 8_4:+18139866 | None:intergenic |
| AGCTGGTCTGATTGCCCCTC+TGG | 0.336763 | 8_4:-18138530 | Msa1317100:CDS |
| ATAATCATGAGGAAACTATT+AGG | 0.352910 | 8_4:-18139061 | Msa1317100:CDS |
| CGCTCGAGAGTGGGAAGTGC+TGG | 0.356662 | 8_4:+18139900 | None:intergenic |
| CAACAACTACCTGCTCAAAC+AGG | 0.361211 | 8_4:+18139999 | None:intergenic |
| CGCACATTGGGAAATATTGT+TGG | 0.377339 | 8_4:-18139629 | Msa1317100:CDS |
| CCTCATGATTATAGGTCAAC+AGG | 0.380295 | 8_4:+18139072 | None:intergenic |
| GTTGACATCTCCCGTGTAAC+CGG | 0.381143 | 8_4:+18138178 | None:intergenic |
| TGTTAATGCGCTTAATGTTA+GGG | 0.385221 | 8_4:-18137797 | Msa1317100:three_prime_UTR |
| TACAAGGTATTTGGCGAGCC+AGG | 0.386593 | 8_4:-18138312 | Msa1317100:intron |
| TGTCAGGCTATTGTCGATCA+TGG | 0.402367 | 8_4:-18139116 | Msa1317100:intron |
| TTTCTGAAGGTCGGAGAAGC+GGG | 0.404428 | 8_4:-18138209 | Msa1317100:CDS |
| CTATTAGGAAAGAAGCTTGT+TGG | 0.406978 | 8_4:-18139046 | Msa1317100:CDS |
| GATAGAGGACGCTGAGGGAT+TGG | 0.413259 | 8_4:-18138141 | Msa1317100:CDS |
| TTGTAGGCTTCGTGGGCGTT+GGG | 0.424209 | 8_4:-18140178 | Msa1317100:intron |
| ATTGTAGGCTTCGTGGGCGT+TGG | 0.424642 | 8_4:-18140179 | Msa1317100:intron |
| ATTCCTGCACTTCGCACATT+GGG | 0.426374 | 8_4:-18139641 | Msa1317100:CDS |
| AGTGACCTTCCTGTCCCATC+TGG | 0.427637 | 8_4:-18137975 | Msa1317100:CDS |
| AATTCTTGAGACATATTGGT+TGG | 0.429330 | 8_4:-18138060 | Msa1317100:CDS |
| CTCTGAAATTGTAGGCTTCG+TGG | 0.429977 | 8_4:-18140186 | Msa1317100:intron |
| CACTTTAAAGGAAGCAGCAT+GGG | 0.435771 | 8_4:-18138479 | Msa1317100:CDS |
| ACTAAGGTTGTAATTGATCA+TGG | 0.440243 | 8_4:-18140352 | Msa1317100:CDS |
| CCAGGCAATGGTTCTCAACC+TGG | 0.441909 | 8_4:-18138014 | Msa1317100:CDS |
| TATAGGTCAACAGGCTCAAA+AGG | 0.448919 | 8_4:+18139081 | None:intergenic |
| ATCGACATATCCTAAATTGA+TGG | 0.460501 | 8_4:+18140769 | None:intergenic |
| TTTCCCAATGTGCGAAGTGC+AGG | 0.468347 | 8_4:+18139638 | None:intergenic |
| GTGGTTTCTTTGATGCAGCT+TGG | 0.470811 | 8_4:-18137902 | Msa1317100:three_prime_UTR |
| GACCTTCCTGTCCCATCTGG+TGG | 0.473588 | 8_4:-18137972 | Msa1317100:CDS |
| ATCCAAGCGGTGATCGAGGC+AGG | 0.474049 | 8_4:-18139795 | Msa1317100:CDS |
| AAGTCCTGGCAGATGCATGC+TGG | 0.475365 | 8_4:-18139854 | Msa1317100:CDS |
| TGCCACTGCAAAAGTCTGAC+AGG | 0.476732 | 8_4:+18140032 | None:intergenic |
| CCAGGTTGAGAACCATTGCC+TGG | 0.484326 | 8_4:+18138014 | None:intergenic |
| TTCCAATGATGAAGAAGTCC+TGG | 0.486182 | 8_4:-18139868 | Msa1317100:CDS |
| GTGGGATAACAGCGGGATCA+TGG | 0.486699 | 8_4:+18140102 | None:intergenic |
| TTGGTAACTAGTGTGTAAGA+TGG | 0.496549 | 8_4:-18137849 | Msa1317100:three_prime_UTR |
| AGAACAAGATCACGGCAACT+AGG | 0.498208 | 8_4:+18140136 | None:intergenic |
| TTTATCACAGACCAACGATA+AGG | 0.498567 | 8_4:+18137555 | None:intergenic |
| TTGACATCTCCCGTGTAACC+GGG | 0.501407 | 8_4:+18138179 | None:intergenic |
| TTACGTACTCGATTTGCTCA+TGG | 0.503439 | 8_4:+18138428 | None:intergenic |
| TCTGAAATTGTAGGCTTCGT+GGG | 0.504629 | 8_4:-18140185 | Msa1317100:intron |
| CGTGATCTTGTTCTCAGTCA+TGG | 0.504641 | 8_4:-18140127 | Msa1317100:CDS |
| GCACTCTCTAATGCTACATC+TGG | 0.509647 | 8_4:-18138457 | Msa1317100:CDS |
| CTGAGTAGGTTGACTAGTAA+TGG | 0.511246 | 8_4:+18140322 | None:intergenic |
| TGGTAAAGCTTCCTTATCGT+TGG | 0.515537 | 8_4:-18137566 | Msa1317100:three_prime_UTR |
| ACCTGCTCAAACAGGGGTTG+TGG | 0.516311 | 8_4:+18140007 | None:intergenic |
| CTAAGGTTGTAATTGATCAT+GGG | 0.519371 | 8_4:-18140351 | Msa1317100:CDS |
| TGGAAACAAAGAGCAGATAC+AGG | 0.519637 | 8_4:-18139003 | Msa1317100:intron |
| TACGTACTCGATTTGCTCAT+GGG | 0.519659 | 8_4:+18138429 | None:intergenic |
| CACCTGCCTCGATCACCGCT+TGG | 0.519888 | 8_4:+18139793 | None:intergenic |
| ACTATATCAAACATTACAGC+TGG | 0.523172 | 8_4:-18139023 | Msa1317100:CDS |
| TCACGAAATTGTACATGCCA+TGG | 0.524493 | 8_4:-18137755 | Msa1317100:three_prime_UTR |
| GTGCCCAGCATGCATCTGCC+AGG | 0.525360 | 8_4:+18139850 | None:intergenic |
| ATGCAGGCTGTTATTGAAGC+TGG | 0.528933 | 8_4:-18138547 | Msa1317100:intron |
| GGAATCACCACTGAAGGAGA+TGG | 0.530861 | 8_4:+18139659 | None:intergenic |
| GTCAACAGGCTCAAAAGGCA+TGG | 0.535056 | 8_4:+18139086 | None:intergenic |
| AGTCCTGGCAGATGCATGCT+GGG | 0.536089 | 8_4:-18139853 | Msa1317100:CDS |
| GTGATCGAGGCAGGTGTATG+TGG | 0.540592 | 8_4:-18139786 | Msa1317100:CDS |
| ACCACAACCCCTGTTTGAGC+AGG | 0.541943 | 8_4:-18140008 | Msa1317100:intron |
| TTTCAGAAGCTTATTTCGAA+GGG | 0.543931 | 8_4:-18140703 | Msa1317100:intron |
| CATTCAAGTGGGATAACAGC+GGG | 0.544153 | 8_4:+18140095 | None:intergenic |
| GATTCCTGCACTTCGCACAT+TGG | 0.546737 | 8_4:-18139642 | Msa1317100:CDS |
| TGGATACTCGCATACATAGC+AGG | 0.547182 | 8_4:-18140391 | Msa1317100:CDS |
| GAAGGTGAGACGCTACCTCC+AGG | 0.547908 | 8_4:-18138032 | Msa1317100:CDS |
| TGGTAACTAGTGTGTAAGAT+GGG | 0.547937 | 8_4:-18137848 | Msa1317100:three_prime_UTR |
| CTGAAATTGAATCCACCAGA+TGG | 0.551966 | 8_4:+18137960 | None:intergenic |
| TGAAAATCAGAATTAACCAC+TGG | 0.553316 | 8_4:+18140721 | None:intergenic |
| ACAAGGTATTTGGCGAGCCA+GGG | 0.554509 | 8_4:-18138311 | Msa1317100:intron |
| ACATTGGGAAATATTGTTGG+CGG | 0.555778 | 8_4:-18139626 | Msa1317100:CDS |
| TATTGAGAATTACGATAGGA+AGG | 0.556384 | 8_4:+18140865 | None:intergenic |
| CTTCGAGAGTGTTCCTCCAG+TGG | 0.558542 | 8_4:-18140737 | Msa1317100:CDS |
| AACAACTACCTGCTCAAACA+GGG | 0.564398 | 8_4:+18140000 | None:intergenic |
| GCACTCTCATATCTTTCTGA+TGG | 0.564443 | 8_4:-18139831 | Msa1317100:CDS |
| TTGAATCCACCAGATGGGAC+AGG | 0.564528 | 8_4:+18137966 | None:intergenic |
| GTCATTGTTCCTTGCAACAA+TGG | 0.567839 | 8_4:+18137927 | None:intergenic |
| GAACAAGATCACGGCAACTA+GGG | 0.568821 | 8_4:+18140137 | None:intergenic |
| AAAATCAAACGCTCGAGAGT+GGG | 0.569493 | 8_4:+18139891 | None:intergenic |
| AGATGAGCTTCATTCTCTTG+TGG | 0.572787 | 8_4:-18137586 | Msa1317100:three_prime_UTR |
| ACGATTGAGAATTGTGCGAA+GGG | 0.574828 | 8_4:+18140822 | None:intergenic |
| ATCAACTCTAAATGCTCCAA+GGG | 0.576067 | 8_4:+18137724 | None:intergenic |
| CAACACTAGGTGAACTGAGT+AGG | 0.577737 | 8_4:+18140308 | None:intergenic |
| AATCAACTCTAAATGCTCCA+AGG | 0.578103 | 8_4:+18137723 | None:intergenic |
| TTTGAAGAAGATTGGCCAGA+GGG | 0.580486 | 8_4:+18138515 | None:intergenic |
| GGCAGGTGTATGTGGCAGAC+TGG | 0.583968 | 8_4:-18139778 | Msa1317100:CDS |
| CAACTATGAAATTTATGAGA+AGG | 0.584407 | 8_4:-18138090 | Msa1317100:CDS |
| TACGATTGAGAATTGTGCGA+AGG | 0.584476 | 8_4:+18140821 | None:intergenic |
| CGGAGACGACATGCAGACTC+AGG | 0.588376 | 8_4:-18139606 | Msa1317100:intron |
| GAATCACCACTGAAGGAGAT+GGG | 0.589410 | 8_4:+18139660 | None:intergenic |
| TCGTGTCGAACAGCAACACT+AGG | 0.591980 | 8_4:+18140295 | None:intergenic |
| AGTGCAGGAATCACCACTGA+AGG | 0.596914 | 8_4:+18139653 | None:intergenic |
| TATCTGCTAGCTCATTCAAG+TGG | 0.597465 | 8_4:+18140083 | None:intergenic |
| AAGGAACCCATCTCCTTCAG+TGG | 0.598343 | 8_4:-18139666 | Msa1317100:CDS |
| CTTGTATGCTCTGATGATAG+AGG | 0.598700 | 8_4:-18138156 | Msa1317100:CDS |
| CTGCCTCTAAAGTTAAAACC+AGG | 0.599377 | 8_4:+18137996 | None:intergenic |
| CAAAATCCAAGCGGTGATCG+AGG | 0.601487 | 8_4:-18139799 | Msa1317100:CDS |
| TCAACAGGCTCAAAAGGCAT+GGG | 0.601793 | 8_4:+18139087 | None:intergenic |
| ACATATTGGTTGGAAAATGA+AGG | 0.605076 | 8_4:-18138050 | Msa1317100:CDS |
| ACGGCAACTAGGGGAATCAC+AGG | 0.609890 | 8_4:+18140147 | None:intergenic |
| GGCCAATCTTCTTCAAAATG+CGG | 0.610233 | 8_4:-18138509 | Msa1317100:CDS |
| GAGACGCTACCTCCAGGCAA+TGG | 0.613911 | 8_4:-18138026 | Msa1317100:CDS |
| ACACTTTAAAGGAAGCAGCA+TGG | 0.615710 | 8_4:-18138480 | Msa1317100:CDS |
| ACAGAGGCTTAATGCAACCC+TGG | 0.616878 | 8_4:+18138294 | None:intergenic |
| TGAAATTGAATCCACCAGAT+GGG | 0.617709 | 8_4:+18137961 | None:intergenic |
| TGTATATTGAGAATTACGAT+AGG | 0.619923 | 8_4:+18140861 | None:intergenic |
| AACAAGATCACGGCAACTAG+GGG | 0.622955 | 8_4:+18140138 | None:intergenic |
| ATCTGCTAGCTCATTCAAGT+GGG | 0.623849 | 8_4:+18140084 | None:intergenic |
| AGTTCATCAATCGTAAAACT+GGG | 0.628450 | 8_4:+18140584 | None:intergenic |
| ACAACTACCTGCTCAAACAG+GGG | 0.630897 | 8_4:+18140001 | None:intergenic |
| TTGAAACAAACCTTGCGTTG+AGG | 0.630899 | 8_4:+18140506 | None:intergenic |
| AAATCAGAATTAACCACTGG+AGG | 0.631255 | 8_4:+18140724 | None:intergenic |
| ATCCACCAGATGGGACAGGA+AGG | 0.631370 | 8_4:+18137970 | None:intergenic |
| TTGCAAGGAACAATGACGAG+TGG | 0.632366 | 8_4:-18137921 | Msa1317100:three_prime_UTR |
| TAAGGTTGTAATTGATCATG+GGG | 0.635016 | 8_4:-18140350 | Msa1317100:CDS |
| TGGAACTTCTGAGAACACTA+AGG | 0.636207 | 8_4:-18140368 | Msa1317100:CDS |
| ATTGAGAATTACGATAGGAA+GGG | 0.639166 | 8_4:+18140866 | None:intergenic |
| CTCCAAGGGAAAACATACCA+TGG | 0.643201 | 8_4:+18137738 | None:intergenic |
| TTCTGAAGGTCGGAGAAGCG+GGG | 0.645633 | 8_4:-18138208 | Msa1317100:CDS |
| AGAATGTGACCATTGTTGCA+AGG | 0.647302 | 8_4:-18137936 | Msa1317100:exon |
| TAGTGTTGCTGTTCGACACG+AGG | 0.649114 | 8_4:-18140293 | Msa1317100:intron |
| CCTGTTGACCTATAATCATG+AGG | 0.649149 | 8_4:-18139072 | Msa1317100:CDS |
| GCCACTGCAAAAGTCTGACA+GGG | 0.649730 | 8_4:+18140033 | None:intergenic |
| TTGAAGAAGATTGGCCAGAG+GGG | 0.658370 | 8_4:+18138516 | None:intergenic |
| TGACATCTCCCGTGTAACCG+GGG | 0.660319 | 8_4:+18138180 | None:intergenic |
| CATGACTGAGAACAAGATCA+CGG | 0.668062 | 8_4:+18140128 | None:intergenic |
| TCTGATGATAGAGGACGCTG+AGG | 0.671126 | 8_4:-18138147 | Msa1317100:CDS |
| CTGATGATAGAGGACGCTGA+GGG | 0.672825 | 8_4:-18138146 | Msa1317100:CDS |
| AGGTGTATGTGGCAGACTGG+TGG | 0.683503 | 8_4:-18139775 | Msa1317100:CDS |
| GCTAGAAATTCAACAAGACG+AGG | 0.687303 | 8_4:+18140542 | None:intergenic |
| TCATTCAAGTGGGATAACAG+CGG | 0.715277 | 8_4:+18140094 | None:intergenic |
| AACAAATGACAAAATCCAAG+CGG | 0.716535 | 8_4:-18139808 | Msa1317100:CDS |
| ATACTCGCATACATAGCAGG+TGG | 0.721830 | 8_4:-18140388 | Msa1317100:CDS |
| GGTTGAGAACCATTGCCTGG+AGG | 0.737525 | 8_4:+18138017 | None:intergenic |
| CAAACAAGCAAATCACACAG+AGG | 0.792177 | 8_4:+18138278 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAACAAAAAAAAAAAAAAAA+AGG | + | chr8_4:18138182-18138201 | None:intergenic | 10.0% |
| !!! | TATTAATACTAGATTTTTTA+TGG | - | chr8_4:18138471-18138490 | Msa1317100:CDS | 10.0% |
| !!! | TTTTTTAAATTGTTATTTTC+TGG | - | chr8_4:18140008-18140027 | Msa1317100:intron | 10.0% |
| !!! | TCTTTTTTTTTTTTTTTTGA+GGG | + | chr8_4:18140781-18140800 | None:intergenic | 10.0% |
| !!! | ATCTTTTTTTTTTTTTTTTG+AGG | + | chr8_4:18140782-18140801 | None:intergenic | 10.0% |
| !! | TAGTATTAATACACAAATAA+AGG | + | chr8_4:18138462-18138481 | None:intergenic | 15.0% |
| !!! | TTTGTTTCAAAATTTTCGAT+TGG | - | chr8_4:18137911-18137930 | Msa1317100:three_prime_UTR | 20.0% |
| !!! | GTTTCAGTTATTGATTAATT+TGG | - | chr8_4:18138691-18138710 | Msa1317100:intron | 20.0% |
| !! | TATAACCTAAAACTATTGAT+AGG | - | chr8_4:18138915-18138934 | Msa1317100:intron | 20.0% |
| !!! | AATTTTTGAAATATTAGCCT+TGG | - | chr8_4:18139076-18139095 | Msa1317100:CDS | 20.0% |
| !! | TCATTAAGTATCAAAAAGAT+GGG | + | chr8_4:18139440-18139459 | None:intergenic | 20.0% |
| !! | ATCATTAAGTATCAAAAAGA+TGG | + | chr8_4:18139441-18139460 | None:intergenic | 20.0% |
| !! | GTTAAATATCATGTTTGATA+AGG | - | chr8_4:18139461-18139480 | Msa1317100:intron | 20.0% |
| !!! | TTACTTTATGTTTTCTGTTT+TGG | - | chr8_4:18139733-18139752 | Msa1317100:intron | 20.0% |
| !!! | TACTTTATGTTTTCTGTTTT+GGG | - | chr8_4:18139734-18139753 | Msa1317100:intron | 20.0% |
| !!! | AGTTGTTTTATTTTTCGAAA+AGG | - | chr8_4:18139805-18139824 | Msa1317100:CDS | 20.0% |
| !!! | TTGATTTGTGAAATCTTTTA+TGG | - | chr8_4:18140889-18140908 | Msa1317100:five_prime_UTR | 20.0% |
| ! | TGTATATTGAGAATTACGAT+AGG | + | chr8_4:18137546-18137565 | None:intergenic | 25.0% |
| ! | ACAATTCTCAATCGTAAATT+AGG | - | chr8_4:18137590-18137609 | Msa1317100:three_prime_UTR | 25.0% |
| ! | CAATTCTCAATCGTAAATTA+GGG | - | chr8_4:18137591-18137610 | Msa1317100:three_prime_UTR | 25.0% |
| ! | GTAAAAGTAACCATCAATTT+AGG | - | chr8_4:18137625-18137644 | Msa1317100:intron | 25.0% |
| !!! | GAAACTTTGTTTTGATTGAT+TGG | - | chr8_4:18137952-18137971 | Msa1317100:CDS | 25.0% |
| ! | AATCTAATAGCAATAGAACT+TGG | - | chr8_4:18138151-18138170 | Msa1317100:CDS | 25.0% |
| ! | AAAGAATTGGTACTTACAAA+AGG | + | chr8_4:18138659-18138678 | None:intergenic | 25.0% |
| ! | TAACTAACACAAGACTAATT+GGG | + | chr8_4:18138865-18138884 | None:intergenic | 25.0% |
| ! | ATAACTAACACAAGACTAAT+TGG | + | chr8_4:18138866-18138885 | None:intergenic | 25.0% |
| !! | ACTTACCTATCAATAGTTTT+AGG | + | chr8_4:18138923-18138942 | None:intergenic | 25.0% |
| !! | AACATGTACTATAGCATTTT+TGG | + | chr8_4:18138979-18138998 | None:intergenic | 25.0% |
| ! | AGAAGAAAAGGAAAAGAAAA+AGG | + | chr8_4:18139013-18139032 | None:intergenic | 25.0% |
| !! | AAAAAACAAAATTGACTCCA+AGG | + | chr8_4:18139096-18139115 | None:intergenic | 25.0% |
| !!! | AGTCAATTTTGTTTTTTCGA+GGG | - | chr8_4:18139099-18139118 | Msa1317100:CDS | 25.0% |
| ! | AATAGTTTCCTCATGATTAT+AGG | + | chr8_4:18139343-18139362 | None:intergenic | 25.0% |
| ! | ATAATCATGAGGAAACTATT+AGG | - | chr8_4:18139343-18139362 | Msa1317100:intron | 25.0% |
| !!! | TTTTCTTCAAGTTTAATGCT+GGG | - | chr8_4:18139513-18139532 | Msa1317100:intron | 25.0% |
| !!! | TGATGATATATTTAGTTCTC+TGG | - | chr8_4:18139612-18139631 | Msa1317100:CDS | 25.0% |
| ! | AATCCAACTATTACTTTGAT+TGG | + | chr8_4:18139643-18139662 | None:intergenic | 25.0% |
| ! | AAAGTAATAGTTGGATTGTT+AGG | - | chr8_4:18139646-18139665 | Msa1317100:CDS | 25.0% |
| ! | TAATATGTAAACTCTCAATG+TGG | + | chr8_4:18140050-18140069 | None:intergenic | 25.0% |
| !! | AAACAGACAGTAACAATTTT+TGG | + | chr8_4:18140159-18140178 | None:intergenic | 25.0% |
| ! | CAACTATGAAATTTATGAGA+AGG | - | chr8_4:18140314-18140333 | Msa1317100:CDS | 25.0% |
| ! | TCAAAATTCTTGAGACATAT+TGG | - | chr8_4:18140340-18140359 | Msa1317100:CDS | 25.0% |
| ! | TAAAAACTACAACTCAATGA+AGG | + | chr8_4:18140535-18140554 | None:intergenic | 25.0% |
| !!! | CATTGAGTTGTAGTTTTTAT+TGG | - | chr8_4:18140536-18140555 | Msa1317100:CDS | 25.0% |
| ! | TAAGCGCATTAACAAAAAAA+AGG | + | chr8_4:18140601-18140620 | None:intergenic | 25.0% |
| ! | GCTTTATAAAAAGCAGTAAT+AGG | + | chr8_4:18140712-18140731 | None:intergenic | 25.0% |
| ATTGAGAATTACGATAGGAA+GGG | + | chr8_4:18137541-18137560 | None:intergenic | 30.0% | |
| TATTGAGAATTACGATAGGA+AGG | + | chr8_4:18137542-18137561 | None:intergenic | 30.0% | |
| ATCGACATATCCTAAATTGA+TGG | + | chr8_4:18137638-18137657 | None:intergenic | 30.0% | |
| TGAAAATCAGAATTAACCAC+TGG | + | chr8_4:18137686-18137705 | None:intergenic | 30.0% | |
| ! | TTTTCAGAAGCTTATTTCGA+AGG | - | chr8_4:18137700-18137719 | Msa1317100:three_prime_UTR | 30.0% |
| TTTCAGAAGCTTATTTCGAA+GGG | - | chr8_4:18137701-18137720 | Msa1317100:three_prime_UTR | 30.0% | |
| !! | CTATGTTGCTTTGTTTCTTT+CGG | - | chr8_4:18137759-18137778 | Msa1317100:three_prime_UTR | 30.0% |
| AGTTCATCAATCGTAAAACT+GGG | + | chr8_4:18137823-18137842 | None:intergenic | 30.0% | |
| AAGTTCATCAATCGTAAAAC+TGG | + | chr8_4:18137824-18137843 | None:intergenic | 30.0% | |
| !!! | TTGTTTAGTTTTTTGCTGCT+TGG | - | chr8_4:18137993-18138012 | Msa1317100:CDS | 30.0% |
| ACTAAGGTTGTAATTGATCA+TGG | - | chr8_4:18138052-18138071 | Msa1317100:CDS | 30.0% | |
| CTAAGGTTGTAATTGATCAT+GGG | - | chr8_4:18138053-18138072 | Msa1317100:CDS | 30.0% | |
| TAAGGTTGTAATTGATCATG+GGG | - | chr8_4:18138054-18138073 | Msa1317100:CDS | 30.0% | |
| !! | CACTAAAACTCTGAAATTGT+AGG | - | chr8_4:18138210-18138229 | Msa1317100:CDS | 30.0% |
| !!! | AGATTTTTTATGGACAGTTG+AGG | - | chr8_4:18138481-18138500 | Msa1317100:CDS | 30.0% |
| AACAAATGACAAAATCCAAG+CGG | - | chr8_4:18138596-18138615 | Msa1317100:intron | 30.0% | |
| GCATTTGTCAAAAGAAGAAA+AGG | + | chr8_4:18139025-18139044 | None:intergenic | 30.0% | |
| !!! | GAGTCAATTTTGTTTTTTCG+AGG | - | chr8_4:18139098-18139117 | Msa1317100:CDS | 30.0% |
| !!! | GTCAATTTTGTTTTTTCGAG+GGG | - | chr8_4:18139100-18139119 | Msa1317100:CDS | 30.0% |
| ! | TTATACTTGCTAGTCATTGT+TGG | - | chr8_4:18139153-18139172 | Msa1317100:intron | 30.0% |
| ATGAGATGACATAATACAAG+GGG | + | chr8_4:18139229-18139248 | None:intergenic | 30.0% | |
| CATGAGATGACATAATACAA+GGG | + | chr8_4:18139230-18139249 | None:intergenic | 30.0% | |
| ACATGAGATGACATAATACA+AGG | + | chr8_4:18139231-18139250 | None:intergenic | 30.0% | |
| ! | TGAGAATTACCTGATTTTGT+GGG | - | chr8_4:18139259-18139278 | Msa1317100:intron | 30.0% |
| ACTATATCAAACATTACAGC+TGG | - | chr8_4:18139381-18139400 | Msa1317100:intron | 30.0% | |
| !! | CTTTTCTTCAAGTTTAATGC+TGG | - | chr8_4:18139512-18139531 | Msa1317100:intron | 30.0% |
| ! | AAACTACATGTTGTTTAACG+TGG | - | chr8_4:18139555-18139574 | Msa1317100:intron | 30.0% |
| ACACCAATCAAAGTAATAGT+TGG | - | chr8_4:18139637-18139656 | Msa1317100:CDS | 30.0% | |
| GTGATGTATTTACAGCAAAA+TGG | + | chr8_4:18139683-18139702 | None:intergenic | 30.0% | |
| CTTGTAACAACAACAACATT+TGG | + | chr8_4:18140078-18140097 | None:intergenic | 30.0% | |
| ! | CAAATGTTGTTGTTGTTACA+AGG | - | chr8_4:18140076-18140095 | Msa1317100:CDS | 30.0% |
| ! | TGTTGTTGTTACAAGGTATT+TGG | - | chr8_4:18140083-18140102 | Msa1317100:CDS | 30.0% |
| ! | ATGTCTTGAGAATTTTCTGA+AGG | - | chr8_4:18140182-18140201 | Msa1317100:intron | 30.0% |
| AATTCTTGAGACATATTGGT+TGG | - | chr8_4:18140344-18140363 | Msa1317100:CDS | 30.0% | |
| ! | ACATATTGGTTGGAAAATGA+AGG | - | chr8_4:18140354-18140373 | Msa1317100:CDS | 30.0% |
| TAACAAAAAAAAGGACAGAC+AGG | + | chr8_4:18140592-18140611 | None:intergenic | 30.0% | |
| TTGTTAATGCGCTTAATGTT+AGG | - | chr8_4:18140606-18140625 | Msa1317100:intron | 30.0% | |
| TGTTAATGCGCTTAATGTTA+GGG | - | chr8_4:18140607-18140626 | Msa1317100:intron | 30.0% | |
| !!! | TACTGCTTTTTATAAAGCTC+TGG | - | chr8_4:18140714-18140733 | Msa1317100:CDS | 30.0% |
| AAATCAGAATTAACCACTGG+AGG | + | chr8_4:18137683-18137702 | None:intergenic | 35.0% | |
| ! | AGTACCAATTCTTTTATCCC+TGG | - | chr8_4:18138665-18138684 | Msa1317100:intron | 35.0% |
| TCAATAACTGAAACAGACCA+GGG | + | chr8_4:18138685-18138704 | None:intergenic | 35.0% | |
| ATCAATAACTGAAACAGACC+AGG | + | chr8_4:18138686-18138705 | None:intergenic | 35.0% | |
| !! | AATGCATGTGCATGTTTTGA+AGG | - | chr8_4:18138719-18138738 | Msa1317100:intron | 35.0% |
| ACATTGGGAAATATTGTTGG+CGG | - | chr8_4:18138778-18138797 | Msa1317100:intron | 35.0% | |
| AGACTCAGGTAATGTCATAA+TGG | - | chr8_4:18138812-18138831 | Msa1317100:intron | 35.0% | |
| GACTCAGGTAATGTCATAAT+GGG | - | chr8_4:18138813-18138832 | Msa1317100:intron | 35.0% | |
| ! | GTGAGAATTACCTGATTTTG+TGG | - | chr8_4:18139258-18139277 | Msa1317100:intron | 35.0% |
| CTATTAGGAAAGAAGCTTGT+TGG | - | chr8_4:18139358-18139377 | Msa1317100:intron | 35.0% | |
| !! | TTATGTTTTCTGTTTTGGGC+TGG | - | chr8_4:18139738-18139757 | Msa1317100:intron | 35.0% |
| !! | TATGTTTTCTGTTTTGGGCT+GGG | - | chr8_4:18139739-18139758 | Msa1317100:intron | 35.0% |
| ! | TTTGTTTGCATTTTACTGCC+AGG | - | chr8_4:18139770-18139789 | Msa1317100:CDS | 35.0% |
| ACAACTAAAATTCACATGCC+TGG | + | chr8_4:18139791-18139810 | None:intergenic | 35.0% | |
| ! | ACCTTTTATGTGTATGATGC+AGG | - | chr8_4:18139841-18139860 | Msa1317100:CDS | 35.0% |
| !! | CTTGAGAATTTTCTGAAGGT+CGG | - | chr8_4:18140186-18140205 | Msa1317100:intron | 35.0% |
| !!! | CAACCTGGTTTTAACTTTAG+AGG | - | chr8_4:18140405-18140424 | Msa1317100:CDS | 35.0% |
| TGAAATTGAATCCACCAGAT+GGG | + | chr8_4:18140446-18140465 | None:intergenic | 35.0% | |
| ! | TTGGTAACTAGTGTGTAAGA+TGG | - | chr8_4:18140555-18140574 | Msa1317100:CDS | 35.0% |
| TGGTAACTAGTGTGTAAGAT+GGG | - | chr8_4:18140556-18140575 | Msa1317100:CDS | 35.0% | |
| ATCAACTCTAAATGCTCCAA+GGG | + | chr8_4:18140683-18140702 | None:intergenic | 35.0% | |
| AATCAACTCTAAATGCTCCA+AGG | + | chr8_4:18140684-18140703 | None:intergenic | 35.0% | |
| TTTATCACAGACCAACGATA+AGG | + | chr8_4:18140852-18140871 | None:intergenic | 35.0% | |
| ACGATTGAGAATTGTGCGAA+GGG | + | chr8_4:18137585-18137604 | None:intergenic | 40.0% | |
| TACGATTGAGAATTGTGCGA+AGG | + | chr8_4:18137586-18137605 | None:intergenic | 40.0% | |
| GCTAGAAATTCAACAAGACG+AGG | + | chr8_4:18137865-18137884 | None:intergenic | 40.0% | |
| TTGAAACAAACCTTGCGTTG+AGG | + | chr8_4:18137901-18137920 | None:intergenic | 40.0% | |
| ! | TGGAACTTCTGAGAACACTA+AGG | - | chr8_4:18138036-18138055 | Msa1317100:CDS | 40.0% |
| ! | CTGAGTAGGTTGACTAGTAA+TGG | + | chr8_4:18138085-18138104 | None:intergenic | 40.0% |
| ! | TCTGAAATTGTAGGCTTCGT+GGG | - | chr8_4:18138219-18138238 | Msa1317100:CDS | 40.0% |
| CATGACTGAGAACAAGATCA+CGG | + | chr8_4:18138279-18138298 | None:intergenic | 40.0% | |
| TCATTCAAGTGGGATAACAG+CGG | + | chr8_4:18138313-18138332 | None:intergenic | 40.0% | |
| ATCTGCTAGCTCATTCAAGT+GGG | + | chr8_4:18138323-18138342 | None:intergenic | 40.0% | |
| TATCTGCTAGCTCATTCAAG+TGG | + | chr8_4:18138324-18138343 | None:intergenic | 40.0% | |
| AACAACTACCTGCTCAAACA+GGG | + | chr8_4:18138407-18138426 | None:intergenic | 40.0% | |
| AAAATCAAACGCTCGAGAGT+GGG | + | chr8_4:18138516-18138535 | None:intergenic | 40.0% | |
| AAAAATCAAACGCTCGAGAG+TGG | + | chr8_4:18138517-18138536 | None:intergenic | 40.0% | |
| TTCCAATGATGAAGAAGTCC+TGG | - | chr8_4:18138536-18138555 | Msa1317100:CDS | 40.0% | |
| GCACTCTCATATCTTTCTGA+TGG | - | chr8_4:18138573-18138592 | Msa1317100:intron | 40.0% | |
| CAGACCAGGGATAAAAGAAT+TGG | + | chr8_4:18138672-18138691 | None:intergenic | 40.0% | |
| CGCACATTGGGAAATATTGT+TGG | - | chr8_4:18138775-18138794 | Msa1317100:intron | 40.0% | |
| !! | GGTAATGTCATAATGGGTTG+TGG | - | chr8_4:18138819-18138838 | Msa1317100:intron | 40.0% |
| TTGACAAATGCTATAGTCCG+TGG | - | chr8_4:18139034-18139053 | Msa1317100:CDS | 40.0% | |
| CAATCAAGCTTCAAGAACCA+CGG | + | chr8_4:18139054-18139073 | None:intergenic | 40.0% | |
| AGGGGTAGTGAAATTGTCTT+GGG | - | chr8_4:18139118-18139137 | Msa1317100:intron | 40.0% | |
| ACAAAGAGTCCCACAAAATC+AGG | + | chr8_4:18139271-18139290 | None:intergenic | 40.0% | |
| ! | ATTTTGTGGGACTCTTTGTC+AGG | - | chr8_4:18139272-18139291 | Msa1317100:intron | 40.0% |
| TATAGGTCAACAGGCTCAAA+AGG | + | chr8_4:18139326-18139345 | None:intergenic | 40.0% | |
| CCTCATGATTATAGGTCAAC+AGG | + | chr8_4:18139335-18139354 | None:intergenic | 40.0% | |
| CCTGTTGACCTATAATCATG+AGG | - | chr8_4:18139332-18139351 | Msa1317100:intron | 40.0% | |
| TGGAAACAAAGAGCAGATAC+AGG | - | chr8_4:18139401-18139420 | Msa1317100:intron | 40.0% | |
| TGCTGTAAATACATCACCGA+AGG | - | chr8_4:18139686-18139705 | Msa1317100:intron | 40.0% | |
| GCTGTAAATACATCACCGAA+GGG | - | chr8_4:18139687-18139706 | Msa1317100:intron | 40.0% | |
| CTGTAAATACATCACCGAAG+GGG | - | chr8_4:18139688-18139707 | Msa1317100:intron | 40.0% | |
| TCATCACAATACAACCCCTT+CGG | + | chr8_4:18139705-18139724 | None:intergenic | 40.0% | |
| GCCTGCATCATACACATAAA+AGG | + | chr8_4:18139845-18139864 | None:intergenic | 40.0% | |
| ! | TTTGAAGAAGATTGGCCAGA+GGG | + | chr8_4:18139892-18139911 | None:intergenic | 40.0% |
| !! | TTTTGAAGAAGATTGGCCAG+AGG | + | chr8_4:18139893-18139912 | None:intergenic | 40.0% |
| GGCCAATCTTCTTCAAAATG+CGG | - | chr8_4:18139895-18139914 | Msa1317100:CDS | 40.0% | |
| !! | CTCCGCATTTTGAAGAAGAT+TGG | + | chr8_4:18139900-18139919 | None:intergenic | 40.0% |
| TGCGGAGTTTGACACTTTAA+AGG | - | chr8_4:18139913-18139932 | Msa1317100:intron | 40.0% | |
| ! | ACACTTTAAAGGAAGCAGCA+TGG | - | chr8_4:18139924-18139943 | Msa1317100:intron | 40.0% |
| ! | CACTTTAAAGGAAGCAGCAT+GGG | - | chr8_4:18139925-18139944 | Msa1317100:intron | 40.0% |
| ! | TACGTACTCGATTTGCTCAT+GGG | + | chr8_4:18139978-18139997 | None:intergenic | 40.0% |
| ! | TTACGTACTCGATTTGCTCA+TGG | + | chr8_4:18139979-18139998 | None:intergenic | 40.0% |
| CAAACAAGCAAATCACACAG+AGG | + | chr8_4:18140129-18140148 | None:intergenic | 40.0% | |
| CTTGTATGCTCTGATGATAG+AGG | - | chr8_4:18140248-18140267 | Msa1317100:intron | 40.0% | |
| !! | CTGCCTCTAAAGTTAAAACC+AGG | + | chr8_4:18140411-18140430 | None:intergenic | 40.0% |
| CTGAAATTGAATCCACCAGA+TGG | + | chr8_4:18140447-18140466 | None:intergenic | 40.0% | |
| AGAATGTGACCATTGTTGCA+AGG | - | chr8_4:18140468-18140487 | Msa1317100:intron | 40.0% | |
| GTCATTGTTCCTTGCAACAA+TGG | + | chr8_4:18140480-18140499 | None:intergenic | 40.0% | |
| TGCGCTTAATGTTAGGGTTT+AGG | - | chr8_4:18140613-18140632 | Msa1317100:intron | 40.0% | |
| GCGCTTAATGTTAGGGTTTA+GGG | - | chr8_4:18140614-18140633 | Msa1317100:intron | 40.0% | |
| TCACGAAATTGTACATGCCA+TGG | - | chr8_4:18140649-18140668 | Msa1317100:intron | 40.0% | |
| AGATGAGCTTCATTCTCTTG+TGG | - | chr8_4:18140818-18140837 | Msa1317100:five_prime_UTR | 40.0% | |
| TGGTAAAGCTTCCTTATCGT+TGG | - | chr8_4:18140838-18140857 | Msa1317100:five_prime_UTR | 40.0% | |
| !! | TGTGCGAAGGGATTTTGAGA+GGG | + | chr8_4:18137573-18137592 | None:intergenic | 45.0% |
| ! | TTGTGCGAAGGGATTTTGAG+AGG | + | chr8_4:18137574-18137593 | None:intergenic | 45.0% |
| ! | TGACGATTTTCCTCAACGCA+AGG | - | chr8_4:18137888-18137907 | Msa1317100:three_prime_UTR | 45.0% |
| TGGATACTCGCATACATAGC+AGG | - | chr8_4:18138013-18138032 | Msa1317100:CDS | 45.0% | |
| ATACTCGCATACATAGCAGG+TGG | - | chr8_4:18138016-18138035 | Msa1317100:CDS | 45.0% | |
| CAACACTAGGTGAACTGAGT+AGG | + | chr8_4:18138099-18138118 | None:intergenic | 45.0% | |
| !! | CTCTGAAATTGTAGGCTTCG+TGG | - | chr8_4:18138218-18138237 | Msa1317100:CDS | 45.0% |
| AACAAGATCACGGCAACTAG+GGG | + | chr8_4:18138269-18138288 | None:intergenic | 45.0% | |
| GAACAAGATCACGGCAACTA+GGG | + | chr8_4:18138270-18138289 | None:intergenic | 45.0% | |
| AGAACAAGATCACGGCAACT+AGG | + | chr8_4:18138271-18138290 | None:intergenic | 45.0% | |
| CGTGATCTTGTTCTCAGTCA+TGG | - | chr8_4:18138277-18138296 | Msa1317100:CDS | 45.0% | |
| CATTCAAGTGGGATAACAGC+GGG | + | chr8_4:18138312-18138331 | None:intergenic | 45.0% | |
| ACAACTACCTGCTCAAACAG+GGG | + | chr8_4:18138406-18138425 | None:intergenic | 45.0% | |
| CAACAACTACCTGCTCAAAC+AGG | + | chr8_4:18138408-18138427 | None:intergenic | 45.0% | |
| TGCCAGGACTTCTTCATCAT+TGG | + | chr8_4:18138541-18138560 | None:intergenic | 45.0% | |
| GAATCACCACTGAAGGAGAT+GGG | + | chr8_4:18138747-18138766 | None:intergenic | 45.0% | |
| ATTCCTGCACTTCGCACATT+GGG | - | chr8_4:18138763-18138782 | Msa1317100:intron | 45.0% | |
| GAGGGGTAGTGAAATTGTCT+TGG | - | chr8_4:18139117-18139136 | Msa1317100:intron | 45.0% | |
| TGTCAGGCTATTGTCGATCA+TGG | - | chr8_4:18139288-18139307 | Msa1317100:intron | 45.0% | |
| ! | TCAACAGGCTCAAAAGGCAT+GGG | + | chr8_4:18139320-18139339 | None:intergenic | 45.0% |
| ATGCAGGCTGTTATTGAAGC+TGG | - | chr8_4:18139857-18139876 | Msa1317100:CDS | 45.0% | |
| ! | TTGAAGAAGATTGGCCAGAG+GGG | + | chr8_4:18139891-18139910 | None:intergenic | 45.0% |
| GCACTCTCTAATGCTACATC+TGG | - | chr8_4:18139947-18139966 | Msa1317100:intron | 45.0% | |
| !! | TTTCTGGCTTTGCTTCATGC+TGG | - | chr8_4:18140024-18140043 | Msa1317100:CDS | 45.0% |
| !! | TTTTCTGAAGGTCGGAGAAG+CGG | - | chr8_4:18140194-18140213 | Msa1317100:intron | 45.0% |
| TTGCAAGGAACAATGACGAG+TGG | - | chr8_4:18140483-18140502 | Msa1317100:intron | 45.0% | |
| GTGGTTTCTTTGATGCAGCT+TGG | - | chr8_4:18140502-18140521 | Msa1317100:intron | 45.0% | |
| ! | TGCCATGGTATGTTTTCCCT+TGG | - | chr8_4:18140664-18140683 | Msa1317100:intron | 45.0% |
| CTCCAAGGGAAAACATACCA+TGG | + | chr8_4:18140669-18140688 | None:intergenic | 45.0% | |
| TCGTGTCGAACAGCAACACT+AGG | + | chr8_4:18138112-18138131 | None:intergenic | 50.0% | |
| ! | TAGTGTTGCTGTTCGACACG+AGG | - | chr8_4:18138111-18138130 | Msa1317100:CDS | 50.0% |
| ! | ACCCTGTCAGACTTTTGCAG+TGG | - | chr8_4:18138370-18138389 | Msa1317100:intron | 50.0% |
| GCCACTGCAAAAGTCTGACA+GGG | + | chr8_4:18138374-18138393 | None:intergenic | 50.0% | |
| TGCCACTGCAAAAGTCTGAC+AGG | + | chr8_4:18138375-18138394 | None:intergenic | 50.0% | |
| CAAAATCCAAGCGGTGATCG+AGG | - | chr8_4:18138605-18138624 | Msa1317100:intron | 50.0% | |
| AAGGAACCCATCTCCTTCAG+TGG | - | chr8_4:18138738-18138757 | Msa1317100:intron | 50.0% | |
| GGAATCACCACTGAAGGAGA+TGG | + | chr8_4:18138748-18138767 | None:intergenic | 50.0% | |
| AGTGCAGGAATCACCACTGA+AGG | + | chr8_4:18138754-18138773 | None:intergenic | 50.0% | |
| GATTCCTGCACTTCGCACAT+TGG | - | chr8_4:18138762-18138781 | Msa1317100:intron | 50.0% | |
| TTTCCCAATGTGCGAAGTGC+AGG | + | chr8_4:18138769-18138788 | None:intergenic | 50.0% | |
| GTCAACAGGCTCAAAAGGCA+TGG | + | chr8_4:18139321-18139340 | None:intergenic | 50.0% | |
| ! | TACAAGGTATTTGGCGAGCC+AGG | - | chr8_4:18140092-18140111 | Msa1317100:CDS | 50.0% |
| ! | ACAAGGTATTTGGCGAGCCA+GGG | - | chr8_4:18140093-18140112 | Msa1317100:CDS | 50.0% |
| ACAGAGGCTTAATGCAACCC+TGG | + | chr8_4:18140113-18140132 | None:intergenic | 50.0% | |
| ! | TTTCTGAAGGTCGGAGAAGC+GGG | - | chr8_4:18140195-18140214 | Msa1317100:intron | 50.0% |
| TTGACATCTCCCGTGTAACC+GGG | + | chr8_4:18140228-18140247 | None:intergenic | 50.0% | |
| GTTGACATCTCCCGTGTAAC+CGG | + | chr8_4:18140229-18140248 | None:intergenic | 50.0% | |
| TCTGATGATAGAGGACGCTG+AGG | - | chr8_4:18140257-18140276 | Msa1317100:intron | 50.0% | |
| CTGATGATAGAGGACGCTGA+GGG | - | chr8_4:18140258-18140277 | Msa1317100:intron | 50.0% | |
| TTGAATCCACCAGATGGGAC+AGG | + | chr8_4:18140441-18140460 | None:intergenic | 50.0% | |
| !! | CTTCGAGAGTGTTCCTCCAG+TGG | - | chr8_4:18137667-18137686 | Msa1317100:three_prime_UTR | 55.0% |
| ATTGTAGGCTTCGTGGGCGT+TGG | - | chr8_4:18138225-18138244 | Msa1317100:CDS | 55.0% | |
| TTGTAGGCTTCGTGGGCGTT+GGG | - | chr8_4:18138226-18138245 | Msa1317100:CDS | 55.0% | |
| ACGGCAACTAGGGGAATCAC+AGG | + | chr8_4:18138260-18138279 | None:intergenic | 55.0% | |
| GTGGGATAACAGCGGGATCA+TGG | + | chr8_4:18138305-18138324 | None:intergenic | 55.0% | |
| ACCACAACCCCTGTTTGAGC+AGG | - | chr8_4:18138396-18138415 | Msa1317100:intron | 55.0% | |
| ACCTGCTCAAACAGGGGTTG+TGG | + | chr8_4:18138400-18138419 | None:intergenic | 55.0% | |
| AAGTCCTGGCAGATGCATGC+TGG | - | chr8_4:18138550-18138569 | Msa1317100:intron | 55.0% | |
| AGTCCTGGCAGATGCATGCT+GGG | - | chr8_4:18138551-18138570 | Msa1317100:intron | 55.0% | |
| GTGATCGAGGCAGGTGTATG+TGG | - | chr8_4:18138618-18138637 | Msa1317100:intron | 55.0% | |
| AGGTGTATGTGGCAGACTGG+TGG | - | chr8_4:18138629-18138648 | Msa1317100:intron | 55.0% | |
| ! | TTCTGAAGGTCGGAGAAGCG+GGG | - | chr8_4:18140196-18140215 | Msa1317100:intron | 55.0% |
| GGGGAAAAACCCCGGTTACA+CGG | - | chr8_4:18140215-18140234 | Msa1317100:intron | 55.0% | |
| GGGAAAAACCCCGGTTACAC+GGG | - | chr8_4:18140216-18140235 | Msa1317100:intron | 55.0% | |
| TGACATCTCCCGTGTAACCG+GGG | + | chr8_4:18140227-18140246 | None:intergenic | 55.0% | |
| GATAGAGGACGCTGAGGGAT+TGG | - | chr8_4:18140263-18140282 | Msa1317100:intron | 55.0% | |
| GGTTGAGAACCATTGCCTGG+AGG | + | chr8_4:18140390-18140409 | None:intergenic | 55.0% | |
| ! | CCAGGTTGAGAACCATTGCC+TGG | + | chr8_4:18140393-18140412 | None:intergenic | 55.0% |
| CCAGGCAATGGTTCTCAACC+TGG | - | chr8_4:18140390-18140409 | Msa1317100:CDS | 55.0% | |
| AGTGACCTTCCTGTCCCATC+TGG | - | chr8_4:18140429-18140448 | Msa1317100:intron | 55.0% | |
| ATCCACCAGATGGGACAGGA+AGG | + | chr8_4:18140437-18140456 | None:intergenic | 55.0% | |
| ATCCAAGCGGTGATCGAGGC+AGG | - | chr8_4:18138609-18138628 | Msa1317100:intron | 60.0% | |
| GGCAGGTGTATGTGGCAGAC+TGG | - | chr8_4:18138626-18138645 | Msa1317100:intron | 60.0% | |
| CGGAGACGACATGCAGACTC+AGG | - | chr8_4:18138798-18138817 | Msa1317100:intron | 60.0% | |
| ! | AGCTGGTCTGATTGCCCCTC+TGG | - | chr8_4:18139874-18139893 | Msa1317100:CDS | 60.0% |
| GGAGAAGCGGGGAAAAACCC+CGG | - | chr8_4:18140207-18140226 | Msa1317100:intron | 60.0% | |
| GAAGGTGAGACGCTACCTCC+AGG | - | chr8_4:18140372-18140391 | Msa1317100:CDS | 60.0% | |
| GAGACGCTACCTCCAGGCAA+TGG | - | chr8_4:18140378-18140397 | Msa1317100:CDS | 60.0% | |
| GACCTTCCTGTCCCATCTGG+TGG | - | chr8_4:18140432-18140451 | Msa1317100:intron | 60.0% | |
| ! | CGCTCGAGAGTGGGAAGTGC+TGG | + | chr8_4:18138507-18138526 | None:intergenic | 65.0% |
| GTGCCCAGCATGCATCTGCC+AGG | + | chr8_4:18138557-18138576 | None:intergenic | 65.0% | |
| CACCTGCCTCGATCACCGCT+TGG | + | chr8_4:18138614-18138633 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 18137500 | 18140926 | 18137500 | ID=Msa1317100;Name=Msa1317100 |
| chr8_4 | mRNA | 18137500 | 18140926 | 18137500 | ID=Msa1317100-mRNA-1;Parent=Msa1317100;Name=Msa1317100-mRNA-1;_AED=0.07;_eAED=0.07;_QI=150|1|1|1|0.88|0.8|10|412|453 |
| chr8_4 | exon | 18137500 | 18137626 | 18137500 | ID=Msa1317100-mRNA-1:exon:6731;Parent=Msa1317100-mRNA-1 |
| chr8_4 | exon | 18137665 | 18138328 | 18137665 | ID=Msa1317100-mRNA-1:exon:6730;Parent=Msa1317100-mRNA-1 |
| chr8_4 | exon | 18138436 | 18138563 | 18138436 | ID=Msa1317100-mRNA-1:exon:6729;Parent=Msa1317100-mRNA-1 |
| chr8_4 | exon | 18139004 | 18139132 | 18139004 | ID=Msa1317100-mRNA-1:exon:6728;Parent=Msa1317100-mRNA-1 |
| chr8_4 | exon | 18139607 | 18139685 | 18139607 | ID=Msa1317100-mRNA-1:exon:6727;Parent=Msa1317100-mRNA-1 |
| chr8_4 | exon | 18139765 | 18139928 | 18139765 | ID=Msa1317100-mRNA-1:exon:6726;Parent=Msa1317100-mRNA-1 |
| chr8_4 | exon | 18140009 | 18140194 | 18140009 | ID=Msa1317100-mRNA-1:exon:6725;Parent=Msa1317100-mRNA-1 |
| chr8_4 | exon | 18140294 | 18140425 | 18140294 | ID=Msa1317100-mRNA-1:exon:6724;Parent=Msa1317100-mRNA-1 |
| chr8_4 | exon | 18140517 | 18140608 | 18140517 | ID=Msa1317100-mRNA-1:exon:6723;Parent=Msa1317100-mRNA-1 |
| chr8_4 | exon | 18140704 | 18140926 | 18140704 | ID=Msa1317100-mRNA-1:exon:6722;Parent=Msa1317100-mRNA-1 |
| chr8_4 | five_prime_UTR | 18140777 | 18140926 | 18140777 | ID=Msa1317100-mRNA-1:five_prime_utr;Parent=Msa1317100-mRNA-1 |
| chr8_4 | CDS | 18140704 | 18140776 | 18140704 | ID=Msa1317100-mRNA-1:cds;Parent=Msa1317100-mRNA-1 |
| chr8_4 | CDS | 18140517 | 18140608 | 18140517 | ID=Msa1317100-mRNA-1:cds;Parent=Msa1317100-mRNA-1 |
| chr8_4 | CDS | 18140294 | 18140425 | 18140294 | ID=Msa1317100-mRNA-1:cds;Parent=Msa1317100-mRNA-1 |
| chr8_4 | CDS | 18140009 | 18140194 | 18140009 | ID=Msa1317100-mRNA-1:cds;Parent=Msa1317100-mRNA-1 |
| chr8_4 | CDS | 18139765 | 18139928 | 18139765 | ID=Msa1317100-mRNA-1:cds;Parent=Msa1317100-mRNA-1 |
| chr8_4 | CDS | 18139607 | 18139685 | 18139607 | ID=Msa1317100-mRNA-1:cds;Parent=Msa1317100-mRNA-1 |
| chr8_4 | CDS | 18139004 | 18139132 | 18139004 | ID=Msa1317100-mRNA-1:cds;Parent=Msa1317100-mRNA-1 |
| chr8_4 | CDS | 18138436 | 18138563 | 18138436 | ID=Msa1317100-mRNA-1:cds;Parent=Msa1317100-mRNA-1 |
| chr8_4 | CDS | 18137950 | 18138328 | 18137950 | ID=Msa1317100-mRNA-1:cds;Parent=Msa1317100-mRNA-1 |
| chr8_4 | three_prime_UTR | 18137665 | 18137949 | 18137665 | ID=Msa1317100-mRNA-1:three_prime_utr;Parent=Msa1317100-mRNA-1 |
| chr8_4 | three_prime_UTR | 18137500 | 18137626 | 18137500 | ID=Msa1317100-mRNA-1:three_prime_utr;Parent=Msa1317100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
