Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377540 | XP_013449858.1 | 98.107 | 317 | 6 | 0 | 1 | 317 | 1 | 317 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377540 | sp|Q94JW0|DOHH_ARATH | 75.884 | 311 | 75 | 0 | 7 | 317 | 4 | 314 | 2.40e-168 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377540 | A0A072U3H2 | 98.107 | 317 | 6 | 0 | 1 | 317 | 1 | 317 | 0.0 | 622 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000550 | Msa1377540 | 0.810423 | 1.161416e-50 | -8.615850e-47 |
| Msa0013050 | Msa1377540 | 0.833316 | 5.720177e-56 | -8.615850e-47 |
| Msa0024210 | Msa1377540 | 0.845630 | 3.603425e-59 | -8.615850e-47 |
| Msa0032840 | Msa1377540 | 0.835928 | 1.261020e-56 | -8.615850e-47 |
| Msa0033110 | Msa1377540 | -0.800761 | 1.238144e-48 | -8.615850e-47 |
| Msa0033260 | Msa1377540 | -0.801260 | 9.791269e-49 | -8.615850e-47 |
| Msa0044540 | Msa1377540 | 0.801338 | 9.437427e-49 | -8.615850e-47 |
| Msa0049650 | Msa1377540 | 0.805505 | 1.292648e-49 | -8.615850e-47 |
| Msa0091410 | Msa1377540 | -0.801035 | 1.088806e-48 | -8.615850e-47 |
| Msa0110970 | Msa1377540 | -0.816471 | 5.437044e-52 | -8.615850e-47 |
| Msa0114540 | Msa1377540 | 0.828112 | 1.077477e-54 | -8.615850e-47 |
| Msa0120010 | Msa1377540 | 0.827043 | 1.945701e-54 | -8.615850e-47 |
| Msa0120020 | Msa1377540 | 0.827060 | 1.926894e-54 | -8.615850e-47 |
| Msa0120040 | Msa1377540 | 0.815837 | 7.533032e-52 | -8.615850e-47 |
| Msa1360980 | Msa1377540 | -0.812393 | 4.337549e-51 | -8.615850e-47 |
| Msa1364470 | Msa1377540 | 0.820211 | 7.731191e-53 | -8.615850e-47 |
| Msa1376090 | Msa1377540 | 0.985152 | 1.095040e-162 | -8.615850e-47 |
| Msa1377540 | Msa1382540 | -0.816015 | 6.876114e-52 | -8.615850e-47 |
| Msa1377540 | Msa1386710 | -0.820104 | 8.182208e-53 | -8.615850e-47 |
| Msa1377540 | Msa1390700 | -0.813662 | 2.284688e-51 | -8.615850e-47 |
| Msa1377540 | Msa1400610 | 0.852548 | 4.295307e-61 | -8.615850e-47 |
| Msa1377540 | Msa1410430 | 0.800139 | 1.657770e-48 | -8.615850e-47 |
| Msa1377540 | Msa1410760 | 0.803104 | 4.087564e-49 | -8.615850e-47 |
| Msa1377540 | Msa1419800 | 0.802862 | 4.586142e-49 | -8.615850e-47 |
| Msa1377540 | Msa1429360 | 0.820396 | 7.011409e-53 | -8.615850e-47 |
| Msa1377540 | Msa1445390 | 0.836910 | 7.091818e-57 | -8.615850e-47 |
| Msa1377540 | Msa1445610 | 0.816199 | 6.255555e-52 | -8.615850e-47 |
| Msa1377540 | Msa1449340 | 0.846575 | 1.992216e-59 | -8.615850e-47 |
| Msa1377540 | Msa1453780 | 0.817699 | 2.880366e-52 | -8.615850e-47 |
| Msa0609410 | Msa1377540 | 0.817187 | 3.755029e-52 | -8.615850e-47 |
| Msa0626090 | Msa1377540 | -0.800468 | 1.421057e-48 | -8.615850e-47 |
| Msa0648240 | Msa1377540 | 0.801500 | 8.746394e-49 | -8.615850e-47 |
| Msa0661190 | Msa1377540 | 0.845574 | 3.730279e-59 | -8.615850e-47 |
| Msa0756630 | Msa1377540 | 0.833540 | 5.029183e-56 | -8.615850e-47 |
| Msa0757450 | Msa1377540 | 0.816025 | 6.840588e-52 | -8.615850e-47 |
| Msa0757500 | Msa1377540 | 0.813976 | 1.948889e-51 | -8.615850e-47 |
| Msa0764130 | Msa1377540 | 0.832825 | 7.579194e-56 | -8.615850e-47 |
| Msa0796700 | Msa1377540 | -0.813611 | 2.344312e-51 | -8.615850e-47 |
| Msa0136070 | Msa1377540 | -0.800489 | 1.406852e-48 | -8.615850e-47 |
| Msa0138820 | Msa1377540 | 0.815250 | 1.017726e-51 | -8.615850e-47 |
| Msa0140500 | Msa1377540 | 0.837388 | 5.354266e-57 | -8.615850e-47 |
| Msa0180790 | Msa1377540 | 0.814760 | 1.307211e-51 | -8.615850e-47 |
| Msa0192510 | Msa1377540 | -0.810615 | 1.055735e-50 | -8.615850e-47 |
| Msa0222920 | Msa1377540 | -0.801579 | 8.424877e-49 | -8.615850e-47 |
| Msa0223410 | Msa1377540 | 0.813201 | 2.885343e-51 | -8.615850e-47 |
| Msa0229490 | Msa1377540 | 0.827235 | 1.749653e-54 | -8.615850e-47 |
| Msa0230550 | Msa1377540 | 0.828760 | 7.513606e-55 | -8.615850e-47 |
| Msa0238070 | Msa1377540 | 0.801585 | 8.399865e-49 | -8.615850e-47 |
| Msa1234560 | Msa1377540 | 0.804052 | 2.598754e-49 | -8.615850e-47 |
| Msa1245940 | Msa1377540 | 0.859767 | 3.293253e-63 | -8.615850e-47 |
| Msa1253930 | Msa1377540 | 0.819927 | 8.982575e-53 | -8.615850e-47 |
| Msa1259070 | Msa1377540 | 0.858538 | 7.692495e-63 | -8.615850e-47 |
| Msa1259590 | Msa1377540 | 0.807449 | 5.027066e-50 | -8.615850e-47 |
| Msa1264020 | Msa1377540 | -0.810374 | 1.190160e-50 | -8.615850e-47 |
| Msa1269580 | Msa1377540 | 0.823830 | 1.121498e-53 | -8.615850e-47 |
| Msa1283840 | Msa1377540 | -0.811568 | 6.560769e-51 | -8.615850e-47 |
| Msa1284260 | Msa1377540 | -0.823974 | 1.037277e-53 | -8.615850e-47 |
| Msa1296460 | Msa1377540 | 0.823681 | 1.215100e-53 | -8.615850e-47 |
| Msa1306840 | Msa1377540 | -0.809699 | 1.663230e-50 | -8.615850e-47 |
| Msa1307660 | Msa1377540 | 0.822720 | 2.036734e-53 | -8.615850e-47 |
| Msa1310770 | Msa1377540 | 0.828572 | 8.346726e-55 | -8.615850e-47 |
| Msa1317100 | Msa1377540 | 0.805398 | 1.361213e-49 | -8.615850e-47 |
| Msa1327050 | Msa1377540 | -0.825954 | 3.537057e-54 | -8.615850e-47 |
| Msa1329050 | Msa1377540 | 0.807774 | 4.288651e-50 | -8.615850e-47 |
| Msa1332040 | Msa1377540 | 0.826842 | 2.172444e-54 | -8.615850e-47 |
| Msa0365100 | Msa1377540 | -0.801939 | 7.105071e-49 | -8.615850e-47 |
| Msa0381610 | Msa1377540 | 0.834141 | 3.558394e-56 | -8.615850e-47 |
| Msa0390400 | Msa1377540 | 0.821656 | 3.595732e-53 | -8.615850e-47 |
| Msa0410650 | Msa1377540 | -0.804380 | 2.221249e-49 | -8.615850e-47 |
| Msa0414950 | Msa1377540 | 0.850924 | 1.239231e-60 | -8.615850e-47 |
| Msa0421780 | Msa1377540 | 0.813507 | 2.471494e-51 | -8.615850e-47 |
| Msa0423040 | Msa1377540 | -0.803560 | 3.288795e-49 | -8.615850e-47 |
| Msa0436280 | Msa1377540 | 0.820192 | 7.808622e-53 | -8.615850e-47 |
| Msa0459770 | Msa1377540 | 0.834366 | 3.124051e-56 | -8.615850e-47 |
| Msa0467900 | Msa1377540 | 0.806307 | 8.766457e-50 | -8.615850e-47 |
| Msa0467960 | Msa1377540 | 0.800367 | 1.489822e-48 | -8.615850e-47 |
| Msa0479170 | Msa1377540 | -0.812797 | 3.538574e-51 | -8.615850e-47 |
| Msa0479970 | Msa1377540 | -0.809068 | 2.271810e-50 | -8.615850e-47 |
| Msa1004900 | Msa1377540 | 0.832783 | 7.761505e-56 | -8.615850e-47 |
| Msa1018990 | Msa1377540 | 0.814570 | 1.440321e-51 | -8.615850e-47 |
| Msa1031930 | Msa1377540 | -0.802097 | 6.594241e-49 | -8.615850e-47 |
| Msa1037650 | Msa1377540 | 0.832074 | 1.163121e-55 | -8.615850e-47 |
| Msa1040400 | Msa1377540 | -0.822332 | 2.507215e-53 | -8.615850e-47 |
| Msa1075220 | Msa1377540 | 0.836366 | 9.758972e-57 | -8.615850e-47 |
| Msa1076810 | Msa1377540 | 0.891717 | 3.078329e-74 | -8.615850e-47 |
| Msa1085200 | Msa1377540 | -0.806680 | 7.314498e-50 | -8.615850e-47 |
| Msa1100240 | Msa1377540 | 0.814743 | 1.319023e-51 | -8.615850e-47 |
| Msa0259210 | Msa1377540 | -0.805632 | 1.215599e-49 | -8.615850e-47 |
| Msa0277450 | Msa1377540 | -0.817595 | 3.040224e-52 | -8.615850e-47 |
| Msa0292120 | Msa1377540 | -0.809149 | 2.181906e-50 | -8.615850e-47 |
| Msa0294560 | Msa1377540 | 0.838335 | 3.057333e-57 | -8.615850e-47 |
| Msa0297790 | Msa1377540 | -0.800517 | 1.388939e-48 | -8.615850e-47 |
| Msa0300690 | Msa1377540 | -0.806443 | 8.204298e-50 | -8.615850e-47 |
| Msa0306210 | Msa1377540 | 0.844601 | 6.835295e-59 | -8.615850e-47 |
| Msa0317160 | Msa1377540 | -0.803511 | 3.366835e-49 | -8.615850e-47 |
| Msa0333720 | Msa1377540 | 0.819112 | 1.378137e-52 | -8.615850e-47 |
| Msa0335800 | Msa1377540 | -0.818039 | 2.413163e-52 | -8.615850e-47 |
| Msa0336320 | Msa1377540 | -0.818126 | 2.306693e-52 | -8.615850e-47 |
| Msa0345330 | Msa1377540 | -0.801834 | 7.469671e-49 | -8.615850e-47 |
| Msa0357340 | Msa1377540 | -0.800927 | 1.145503e-48 | -8.615850e-47 |
| Msa1116130 | Msa1377540 | 0.853676 | 2.041096e-61 | -8.615850e-47 |
| Msa1130270 | Msa1377540 | 0.811255 | 7.670467e-51 | -8.615850e-47 |
| Msa1137570 | Msa1377540 | -0.805643 | 1.208935e-49 | -8.615850e-47 |
| Msa1139000 | Msa1377540 | 0.834514 | 2.868920e-56 | -8.615850e-47 |
| Msa1145250 | Msa1377540 | 0.824486 | 7.864935e-54 | -8.615850e-47 |
| Msa1162550 | Msa1377540 | 0.811580 | 6.520141e-51 | -8.615850e-47 |
| Msa1163650 | Msa1377540 | 0.975632 | 2.606738e-140 | -8.615850e-47 |
| Msa1165870 | Msa1377540 | -0.800277 | 1.554514e-48 | -8.615850e-47 |
| Msa1190890 | Msa1377540 | 0.803564 | 3.282866e-49 | -8.615850e-47 |
| Msa1201430 | Msa1377540 | 0.803175 | 3.952512e-49 | -8.615850e-47 |
| Msa1204100 | Msa1377540 | 0.814304 | 1.649019e-51 | -8.615850e-47 |
| Msa1208890 | Msa1377540 | 0.856816 | 2.490607e-62 | -8.615850e-47 |
| Msa1211150 | Msa1377540 | 0.806110 | 9.642742e-50 | -8.615850e-47 |
| Msa1218280 | Msa1377540 | 0.806559 | 7.757254e-50 | -8.615850e-47 |
| Msa0507680 | Msa1377540 | -0.805172 | 1.517568e-49 | -8.615850e-47 |
| Msa0577500 | Msa1377540 | -0.807785 | 4.266228e-50 | -8.615850e-47 |
| Msa0585000 | Msa1377540 | 0.802612 | 5.166297e-49 | -8.615850e-47 |
| Msa0843780 | Msa1377540 | 0.840903 | 6.569144e-58 | -8.615850e-47 |
| Msa0883800 | Msa1377540 | -0.805870 | 1.083284e-49 | -8.615850e-47 |
| Msa0893480 | Msa1377540 | 0.823555 | 1.300438e-53 | -8.615850e-47 |
| Msa0942550 | Msa1377540 | 0.846703 | 1.839033e-59 | -8.615850e-47 |
| Msa0942560 | Msa1377540 | 0.861379 | 1.069234e-63 | -8.615850e-47 |
| Msa0947660 | Msa1377540 | -0.812669 | 3.774184e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377540 | MtrunA17_Chr7g0260951 | 98.107 | 317 | 6 | 0 | 1 | 317 | 1 | 317 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377540 | AT3G58180.1 | 75.884 | 311 | 75 | 0 | 7 | 317 | 4 | 314 | 2.44e-169 | 473 |
| Msa1377540 | AT3G62530.1 | 50.968 | 155 | 69 | 2 | 151 | 304 | 68 | 216 | 1.39e-41 | 144 |
| Msa1377540 | AT3G62530.1 | 36.923 | 130 | 78 | 3 | 22 | 150 | 92 | 218 | 2.71e-13 | 68.6 |
Find 82 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTTCTCGATGAGGAAAA+AGG | 0.236522 | tig0019933:-81249 | Msa1377540:CDS |
| CCTCGCACCGCCCTTATTCT+AGG | 0.251159 | tig0019933:-82342 | Msa1377540:intron |
| TGCTGCTATTGTTGATTCCT+TGG | 0.290741 | tig0019933:-81166 | Msa1377540:CDS |
| ATTCACATCTCTAAGTATAT+TGG | 0.307934 | tig0019933:+80724 | None:intergenic |
| AAGCAGCTTTGTCTTGCAAT+TGG | 0.318055 | tig0019933:+80759 | None:intergenic |
| CACGAAGCTGCATTTGCATT+AGG | 0.319693 | tig0019933:-81788 | Msa1377540:CDS |
| AAAGGGAGTAACCTAGAATA+AGG | 0.319941 | tig0019933:+82331 | None:intergenic |
| GAAGCCCTTGGTTCAATTGC+AGG | 0.331761 | tig0019933:-80671 | Msa1377540:intron |
| TGAAGCGTTCGGAGATTGGC+TGG | 0.334155 | tig0019933:+82403 | None:intergenic |
| ATAAGGGCGGTGCGAGGGGC+GGG | 0.339458 | tig0019933:+82348 | None:intergenic |
| ACGAAGCTGCATTTGCATTA+GGG | 0.353033 | tig0019933:-81787 | Msa1377540:CDS |
| ATGCTAGAATTTGAAAGATC+AGG | 0.354231 | tig0019933:-79464 | Msa1377540:CDS |
| CAAGAGCTGGCCGGTGCTGC+AGG | 0.367951 | tig0019933:+81390 | None:intergenic |
| TGCGAGGGGCGGGGCCTTTG+AGG | 0.372831 | tig0019933:+82358 | None:intergenic |
| TAAGGGCGGTGCGAGGGGCG+GGG | 0.381669 | tig0019933:+82349 | None:intergenic |
| CTTTGTGCAACAAGAGGCTC+TGG | 0.382092 | tig0019933:+79506 | None:intergenic |
| CGGAGGCGATCGGCGAGTTC+AGG | 0.384147 | tig0019933:+82587 | None:intergenic |
| GCTGAAGCACTAGGCGCTAT+TGG | 0.386313 | tig0019933:-81579 | Msa1377540:CDS |
| GCTGCTATTGTTGATTCCTT+GGG | 0.393386 | tig0019933:-81165 | Msa1377540:CDS |
| AATAAGGGCGGTGCGAGGGG+CGG | 0.393478 | tig0019933:+82347 | None:intergenic |
| AAGAGATTCATCGAATTTGT+TGG | 0.413615 | tig0019933:-81813 | Msa1377540:CDS |
| GTTCTTCAGTTGGTCAACTA+AGG | 0.420278 | tig0019933:-81368 | Msa1377540:intron |
| GAAAACGTTTAATGTACAAT+TGG | 0.420894 | tig0019933:+79327 | None:intergenic |
| GGGTGGAGAGACTTTCGTTT+CGG | 0.422867 | tig0019933:-78742 | Msa1377540:three_prime_UTR |
| ATGTTTCAATAAAGCACTCT+TGG | 0.443976 | tig0019933:+81140 | None:intergenic |
| GCTCTGAAGCGTTCGGAGAT+TGG | 0.445480 | tig0019933:+82399 | None:intergenic |
| CAATTGGAGGACGCATGAAC+AGG | 0.447305 | tig0019933:+79343 | None:intergenic |
| CTTCAAGAAGGTATACACTT+TGG | 0.450900 | tig0019933:+79543 | None:intergenic |
| GCCAGCTCTTGTTCTTCAGT+TGG | 0.457141 | tig0019933:-81378 | Msa1377540:CDS |
| GTCTGTTGATCCTGCAGCAC+CGG | 0.466493 | tig0019933:-81400 | Msa1377540:CDS |
| GAAGAGTGCTCTGAAGCGTT+CGG | 0.477233 | tig0019933:+82392 | None:intergenic |
| ACTACCTCATGGCGAACAAT+GGG | 0.478742 | tig0019933:+81701 | None:intergenic |
| GTTTCTCGAACCTCTTGAGC+TGG | 0.484293 | tig0019933:+81510 | None:intergenic |
| GCAGGATCAACAGACTTAAA+CGG | 0.491292 | tig0019933:+81408 | None:intergenic |
| AACTGAGGTTAATGCAGGTA+TGG | 0.493370 | tig0019933:+81745 | None:intergenic |
| GCTTAGGCAGCTGAAGCACT+AGG | 0.495965 | tig0019933:-81588 | Msa1377540:intron |
| GAAGCGTTCGGAGATTGGCT+GGG | 0.496757 | tig0019933:+82404 | None:intergenic |
| AACGTTTAATGTACAATTGG+AGG | 0.500470 | tig0019933:+79330 | None:intergenic |
| TAGAATAAGGGCGGTGCGAG+GGG | 0.501591 | tig0019933:+82344 | None:intergenic |
| AGAAAGTTGCTGATTGTGAC+AGG | 0.506378 | tig0019933:-78763 | Msa1377540:three_prime_UTR |
| TGCTAGAATTTGAAAGATCA+GGG | 0.509212 | tig0019933:-79463 | Msa1377540:CDS |
| GTTCCTGTGCGAGTTGCTGT+TGG | 0.510297 | tig0019933:-82433 | Msa1377540:CDS |
| TACTACCTCATGGCGAACAA+TGG | 0.510393 | tig0019933:+81700 | None:intergenic |
| AAGATCAGGGAAATCGTTTG+AGG | 0.512480 | tig0019933:-79450 | Msa1377540:intron |
| CATGAGGCTGCTGAAGCCCT+TGG | 0.515557 | tig0019933:-80683 | Msa1377540:CDS |
| GCAGCCTCATGTCTAACCAT+TGG | 0.519278 | tig0019933:+80695 | None:intergenic |
| CGGTGTCTGACGGAGGCGAT+CGG | 0.528678 | tig0019933:+82577 | None:intergenic |
| CGCTTCGTGCTCATCAGAGA+TGG | 0.529035 | tig0019933:-82460 | Msa1377540:CDS |
| CTAGAATAAGGGCGGTGCGA+GGG | 0.531517 | tig0019933:+82343 | None:intergenic |
| TTCTCTCTTCGCAACCTCAA+AGG | 0.536423 | tig0019933:-82372 | Msa1377540:CDS |
| GGATTCTGATCCAGCTCAAG+AGG | 0.544300 | tig0019933:-81520 | Msa1377540:CDS |
| AAGGGAGTAACCTAGAATAA+GGG | 0.546220 | tig0019933:+82332 | None:intergenic |
| ACCAACTGAAGAACAAGAGC+TGG | 0.552840 | tig0019933:+81377 | None:intergenic |
| TGACAACTTTGTGCAACAAG+AGG | 0.553059 | tig0019933:+79500 | None:intergenic |
| GACTTAAACGGAGAAATAGC+AGG | 0.567631 | tig0019933:+81420 | None:intergenic |
| GTTTCAGATACTTATTGAGT+CGG | 0.568670 | tig0019933:-78713 | Msa1377540:three_prime_UTR |
| TTAAGAACTGAGGTTAATGC+AGG | 0.570810 | tig0019933:+81740 | None:intergenic |
| CGCATGAGATTGAAGTGACA+AGG | 0.571112 | tig0019933:-79263 | Msa1377540:three_prime_UTR |
| AGTCCAACAGCAACTCGCAC+AGG | 0.572500 | tig0019933:+82430 | None:intergenic |
| TAAAGCACTCTTGGAACCCA+AGG | 0.578502 | tig0019933:+81149 | None:intergenic |
| GAGTGCTTTATTGAAACATG+AGG | 0.578510 | tig0019933:-81136 | Msa1377540:intron |
| ATGGCGAACAATGGGATGCA+AGG | 0.582507 | tig0019933:+81709 | None:intergenic |
| TTTGCACTTCGAAATGATGG+TGG | 0.586504 | tig0019933:-81201 | Msa1377540:CDS |
| TAGGGATTTACTTCTCGATG+AGG | 0.598291 | tig0019933:-81256 | Msa1377540:CDS |
| AGAGTGTGGGCTTATGAAGA+CGG | 0.609485 | tig0019933:+82536 | None:intergenic |
| CTGCCGAAAATTCTTCAAGA+AGG | 0.610074 | tig0019933:+79531 | None:intergenic |
| GCATCCCATTGTTCGCCATG+AGG | 0.616911 | tig0019933:-81705 | Msa1377540:intron |
| ACTGAAGAACAAGAGCTGGC+CGG | 0.622351 | tig0019933:+81381 | None:intergenic |
| AAAATTGTGAGAAGAGAGTG+TGG | 0.624309 | tig0019933:+82522 | None:intergenic |
| CTTGTCACTTCAATCTCATG+CGG | 0.624776 | tig0019933:+79264 | None:intergenic |
| CCTAGAATAAGGGCGGTGCG+AGG | 0.629672 | tig0019933:+82342 | None:intergenic |
| AATACCTGCAATTGAACCAA+GGG | 0.629721 | tig0019933:+80667 | None:intergenic |
| GCATCCAATGGTTAGACATG+AGG | 0.635787 | tig0019933:-80699 | Msa1377540:CDS |
| CAATACCTGCAATTGAACCA+AGG | 0.638670 | tig0019933:+80666 | None:intergenic |
| AGATGTGAATGAGCATCCAA+TGG | 0.641853 | tig0019933:-80711 | Msa1377540:CDS |
| GGAAAGATCATTAAGAACTG+AGG | 0.652674 | tig0019933:+81730 | None:intergenic |
| TTTGTGCAACAAGAGGCTCT+GGG | 0.657645 | tig0019933:+79507 | None:intergenic |
| AAATTGTGAGAAGAGAGTGT+GGG | 0.702881 | tig0019933:+82523 | None:intergenic |
| ACAGCAAAATAACGTAGACA+CGG | 0.706456 | tig0019933:-79240 | Msa1377540:three_prime_UTR |
| GGAGTAACCTAGAATAAGGG+CGG | 0.721114 | tig0019933:+82335 | None:intergenic |
| AGTTGCTGATTGTGACAGGG+TGG | 0.738672 | tig0019933:-78759 | Msa1377540:three_prime_UTR |
| GAAAGTTGCTGATTGTGACA+GGG | 0.739025 | tig0019933:-78762 | Msa1377540:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAGTTATTTTTATGTTA+AGG | + | tig0019933:79244-79263 | None:intergenic | 10.0% |
| !!! | GGTTTTAAATTAATAATATT+AGG | - | tig0019933:79987-80006 | Msa1377540:intron | 10.0% |
| !!! | TTTTTAATCTATCTTCTATT+TGG | - | tig0019933:81244-81263 | Msa1377540:CDS | 15.0% |
| !!! | ATTTTAACATTATTTACTTG+TGG | - | tig0019933:82239-82258 | Msa1377540:intron | 15.0% |
| !!! | TTTTTGTTTATAGTTCATTG+CGG | - | tig0019933:79126-79145 | Msa1377540:intron | 20.0% |
| !! | ATAAGTTGTTTATCCAAATA+GGG | - | tig0019933:79218-79237 | Msa1377540:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+AGG | - | tig0019933:79346-79365 | Msa1377540:CDS | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+GGG | - | tig0019933:79347-79366 | Msa1377540:CDS | 20.0% |
| !!! | TGCATTTATCTTTTTATACA+TGG | + | tig0019933:80705-80724 | None:intergenic | 20.0% |
| !! | TTTGAATAGTAAAAACTAAC+AGG | + | tig0019933:80954-80973 | None:intergenic | 20.0% |
| !!! | TTTTAAAGTTTTATGCTTCT+TGG | - | tig0019933:80978-80997 | Msa1377540:intron | 20.0% |
| !!! | AAATTCATGTTTTAGTGATT+TGG | + | tig0019933:81315-81334 | None:intergenic | 20.0% |
| !! | AAACATGAATTTATTTCCTT+TGG | - | tig0019933:81323-81342 | Msa1377540:intron | 20.0% |
| !!! | GTTCTATGTTTAGTAAATTT+TGG | + | tig0019933:81375-81394 | None:intergenic | 20.0% |
| !! | AATTAAATAGAAGTCAAACT+TGG | + | tig0019933:81545-81564 | None:intergenic | 20.0% |
| !! | AGTGATAAATAAAAACATTG+AGG | + | tig0019933:81623-81642 | None:intergenic | 20.0% |
| ! | AATTGAAGAGAAAAGGAAAA+GGG | + | tig0019933:78951-78970 | None:intergenic | 25.0% |
| ! | AAATTGAAGAGAAAAGGAAA+AGG | + | tig0019933:78952-78971 | None:intergenic | 25.0% |
| ! | CTTGAAAAGTTGAAGTAAAA+TGG | + | tig0019933:79102-79121 | None:intergenic | 25.0% |
| ! | GCAATGAACTATAAACAAAA+AGG | + | tig0019933:79127-79146 | None:intergenic | 25.0% |
| ! | GATAAGTTGTTTATCCAAAT+AGG | - | tig0019933:79217-79236 | Msa1377540:intron | 25.0% |
| ! | ACTAAGTTGTTTATCCAAAT+AGG | - | tig0019933:79277-79296 | Msa1377540:three_prime_UTR | 25.0% |
| ! | CTAAGTTGTTTATCCAAATA+GGG | - | tig0019933:79278-79297 | Msa1377540:three_prime_UTR | 25.0% |
| ! | TTGTTAAGTGTATTATTGCA+TGG | - | tig0019933:79390-79409 | Msa1377540:intron | 25.0% |
| !! | TAATTTGTATGTTGCTAACT+CGG | - | tig0019933:79966-79985 | Msa1377540:intron | 25.0% |
| ! | AAAAATTCAGAGAATCAAAC+AGG | + | tig0019933:80439-80458 | None:intergenic | 25.0% |
| !!! | ACTGTATTTGCTGAAATTTT+AGG | - | tig0019933:80464-80483 | Msa1377540:intron | 25.0% |
| !!! | ATTTTAGGTTGCATATGTTT+TGG | - | tig0019933:80479-80498 | Msa1377540:intron | 25.0% |
| !!! | TTTTAGGTTGCATATGTTTT+GGG | - | tig0019933:80480-80499 | Msa1377540:intron | 25.0% |
| ! | ATTCACATCTCTAAGTATAT+TGG | + | tig0019933:80541-80560 | None:intergenic | 25.0% |
| ! | ATGGTATTAATATTGCTTTG+TGG | - | tig0019933:80673-80692 | Msa1377540:CDS | 25.0% |
| !! | GTCTAAGTAAATGTTCTTTT+TGG | - | tig0019933:80773-80792 | Msa1377540:CDS | 25.0% |
| !! | GTTGCAACTTTTAGTATTTA+TGG | - | tig0019933:80828-80847 | Msa1377540:intron | 25.0% |
| ! | GTTTGCAAATAAAAAAGTAG+AGG | - | tig0019933:80914-80933 | Msa1377540:intron | 25.0% |
| !! | AAATAAAAAAGTAGAGGTGT+TGG | - | tig0019933:80920-80939 | Msa1377540:intron | 25.0% |
| ! | TTGGTTCAACTAAAAAAGTT+GGG | + | tig0019933:81356-81375 | None:intergenic | 25.0% |
| !! | TTTGGTTCAACTAAAAAAGT+TGG | + | tig0019933:81357-81376 | None:intergenic | 25.0% |
| ! | ATTAAACTGAAGTCAAACTT+GGG | + | tig0019933:81452-81471 | None:intergenic | 25.0% |
| ! | AATTAAACTGAAGTCAAACT+TGG | + | tig0019933:81453-81472 | None:intergenic | 25.0% |
| ! | ACAAAAGAACTATGTAAACA+GGG | + | tig0019933:81682-81701 | None:intergenic | 25.0% |
| !! | ATACCTTCTTGAAGAATTTT+CGG | - | tig0019933:81728-81747 | Msa1377540:CDS | 25.0% |
| ! | GAAAACGTTTAATGTACAAT+TGG | + | tig0019933:81938-81957 | None:intergenic | 25.0% |
| !! | GTACATTAAACGTTTTCTTA+TGG | - | tig0019933:81941-81960 | Msa1377540:intron | 25.0% |
| ! | ATTTCTTAACTCAAAGTTGA+TGG | - | tig0019933:82065-82084 | Msa1377540:intron | 25.0% |
| !! | AGAAACATTTTGTGATGAAT+TGG | - | tig0019933:82149-82168 | Msa1377540:intron | 25.0% |
| !! | TAAAAGGTAGACTTTACTTT+TGG | + | tig0019933:82191-82210 | None:intergenic | 25.0% |
| ! | GTTATTCTTAGTTATGATTG+AGG | + | tig0019933:82382-82401 | None:intergenic | 25.0% |
| ! | AAGCACTTTGAATTACATAT+AGG | + | tig0019933:82459-82478 | None:intergenic | 25.0% |
| GCTGTAAAATTGAAGAGAAA+AGG | + | tig0019933:78958-78977 | None:intergenic | 30.0% | |
| AATACATGTTTCATTCTGGA+AGG | + | tig0019933:79046-79065 | None:intergenic | 30.0% | |
| TTCCAGAATGAAACATGTAT+TGG | - | tig0019933:79045-79064 | Msa1377540:intron | 30.0% | |
| TTCCAATACATGTTTCATTC+TGG | + | tig0019933:79050-79069 | None:intergenic | 30.0% | |
| ! | TTTTATGTTAAGGCCCTATT+TGG | + | tig0019933:79234-79253 | None:intergenic | 30.0% |
| TGATTGATTAAGTCCCTATT+TGG | + | tig0019933:79363-79382 | None:intergenic | 30.0% | |
| AAGAGATTCATCGAATTTGT+TGG | - | tig0019933:79449-79468 | Msa1377540:intron | 30.0% | |
| TCAGAAAAGGAAGAAATAGA+AGG | + | tig0019933:79597-79616 | None:intergenic | 30.0% | |
| AAAAGTGACACATTCAGAAA+AGG | + | tig0019933:79610-79629 | None:intergenic | 30.0% | |
| TGTTTGTTTCAATCTTGCTT+AGG | - | tig0019933:79658-79677 | Msa1377540:intron | 30.0% | |
| !!! | TTCTCTTTTGAAGCATAGTT+TGG | - | tig0019933:79721-79740 | Msa1377540:intron | 30.0% |
| AACATACAAATTACTCTCTC+TGG | + | tig0019933:79959-79978 | None:intergenic | 30.0% | |
| ! | ATGTTTCAATAAAGCACTCT+TGG | + | tig0019933:80125-80144 | None:intergenic | 30.0% |
| ! | GTTTAAAAGTACGAACGATA+TGG | + | tig0019933:80272-80291 | None:intergenic | 30.0% |
| AAAGTTAAGCAGCAACATTA+AGG | + | tig0019933:80409-80428 | None:intergenic | 30.0% | |
| ! | GCATTTAAAACCACATACTA+TGG | - | tig0019933:80618-80637 | Msa1377540:intron | 30.0% |
| ! | TATATTATTGACTGCAACAG+AGG | + | tig0019933:80654-80673 | None:intergenic | 30.0% |
| CTGTTGCAGTCAATAATATA+TGG | - | tig0019933:80654-80673 | Msa1377540:intron | 30.0% | |
| !! | AAAGTTTTATGCTTCTTGGT+TGG | - | tig0019933:80982-81001 | Msa1377540:intron | 30.0% |
| GTAGATACTTCTTTGTGATT+TGG | - | tig0019933:81185-81204 | Msa1377540:CDS | 30.0% | |
| GACTAAACAGACTATATAAC+AGG | + | tig0019933:81211-81230 | None:intergenic | 30.0% | |
| TGGTTCAACTAAAAAAGTTG+GGG | + | tig0019933:81355-81374 | None:intergenic | 30.0% | |
| !! | CTTCTATTTAATTTTGCCTC+TGG | - | tig0019933:81552-81571 | Msa1377540:CDS | 30.0% |
| GACAAAAGAACTATGTAAAC+AGG | + | tig0019933:81683-81702 | None:intergenic | 30.0% | |
| ATGCTAGAATTTGAAAGATC+AGG | - | tig0019933:81798-81817 | Msa1377540:CDS | 30.0% | |
| TGCTAGAATTTGAAAGATCA+GGG | - | tig0019933:81799-81818 | Msa1377540:CDS | 30.0% | |
| ! | ACACTACTATCTTTTTCTCT+TGG | - | tig0019933:81888-81907 | Msa1377540:intron | 30.0% |
| AACGTTTAATGTACAATTGG+AGG | + | tig0019933:81935-81954 | None:intergenic | 30.0% | |
| AAAACTAGCCCTATAAAACA+AGG | - | tig0019933:82096-82115 | Msa1377540:intron | 30.0% | |
| AAACTAGCCCTATAAAACAA+GGG | - | tig0019933:82097-82116 | Msa1377540:intron | 30.0% | |
| !!! | AGTTCAACCCTTGTTTTATA+GGG | + | tig0019933:82107-82126 | None:intergenic | 30.0% |
| GTGGAAAAATTGTAAAACTC+TGG | - | tig0019933:82258-82277 | Msa1377540:intron | 30.0% | |
| TCATACTTCATACCAAGATT+TGG | - | tig0019933:82293-82312 | Msa1377540:intron | 30.0% | |
| !! | TTACATGTATTTTGCTGTGA+TGG | - | tig0019933:82402-82421 | Msa1377540:CDS | 30.0% |
| ! | AATTCAAAGTGCTTTGTTAC+AGG | - | tig0019933:82465-82484 | Msa1377540:CDS | 30.0% |
| GTTTCAGATACTTATTGAGT+CGG | - | tig0019933:82549-82568 | Msa1377540:intron | 30.0% | |
| ! | AAATTGTGAGAAGAGAGTGT+GGG | + | tig0019933:78742-78761 | None:intergenic | 35.0% |
| AAAATTGTGAGAAGAGAGTG+TGG | + | tig0019933:78743-78762 | None:intergenic | 35.0% | |
| AAGGGAGTAACCTAGAATAA+GGG | + | tig0019933:78933-78952 | None:intergenic | 35.0% | |
| AAAGGGAGTAACCTAGAATA+AGG | + | tig0019933:78934-78953 | None:intergenic | 35.0% | |
| TTGTTTATAGTTCATTGCGG+AGG | - | tig0019933:79129-79148 | Msa1377540:intron | 35.0% | |
| ! | AACCAGCTTTTCTTTCTCTT+TGG | - | tig0019933:79419-79438 | Msa1377540:intron | 35.0% |
| TTAAGAACTGAGGTTAATGC+AGG | + | tig0019933:79525-79544 | None:intergenic | 35.0% | |
| GGAAAGATCATTAAGAACTG+AGG | + | tig0019933:79535-79554 | None:intergenic | 35.0% | |
| GAAGAAATAGAAGGCTACTA+CGG | + | tig0019933:79588-79607 | None:intergenic | 35.0% | |
| ! | TTGGTCAACTAAGGTTTGTT+TGG | - | tig0019933:79903-79922 | Msa1377540:intron | 35.0% |
| TTACTTCTCGATGAGGAAAA+AGG | - | tig0019933:80013-80032 | Msa1377540:intron | 35.0% | |
| TACTTCTCGATGAGGAAAAA+GGG | - | tig0019933:80014-80033 | Msa1377540:intron | 35.0% | |
| ! | CTTTTTGCACTTCGAAATGA+TGG | - | tig0019933:80058-80077 | Msa1377540:intron | 35.0% |
| ! | GAGTGCTTTATTGAAACATG+AGG | - | tig0019933:80126-80145 | Msa1377540:intron | 35.0% |
| TTGTATGAATTGCACGTAAG+TGG | - | tig0019933:80200-80219 | Msa1377540:intron | 35.0% | |
| ACTTCACATGAGAAAACATC+AGG | - | tig0019933:80231-80250 | Msa1377540:intron | 35.0% | |
| AAAACATCAGGTCAATCTAG+AGG | - | tig0019933:80243-80262 | Msa1377540:intron | 35.0% | |
| AAACATCAGGTCAATCTAGA+GGG | - | tig0019933:80244-80263 | Msa1377540:intron | 35.0% | |
| CGTTGAACCATTATATTCGT+TGG | - | tig0019933:80291-80310 | Msa1377540:intron | 35.0% | |
| TTCTGCTCCAACGAATATAA+TGG | + | tig0019933:80301-80320 | None:intergenic | 35.0% | |
| AATACCTGCAATTGAACCAA+GGG | + | tig0019933:80598-80617 | None:intergenic | 35.0% | |
| TCACATGATTCCATAGTATG+TGG | + | tig0019933:80631-80650 | None:intergenic | 35.0% | |
| TGAGCAGTTCAACTTAACTT+AGG | - | tig0019933:80806-80825 | Msa1377540:intron | 35.0% | |
| TGACTCAGTTCATATCTGTA+TGG | - | tig0019933:80851-80870 | Msa1377540:intron | 35.0% | |
| !!! | CATATCTGTATGGTTTTGAC+TGG | - | tig0019933:80861-80880 | Msa1377540:intron | 35.0% |
| TTATGCTTCTTGGTTGGATT+TGG | - | tig0019933:80988-81007 | Msa1377540:intron | 35.0% | |
| AGCGTCTAACTATTAGTTCA+TGG | - | tig0019933:81039-81058 | Msa1377540:intron | 35.0% | |
| GCGTCTAACTATTAGTTCAT+GGG | - | tig0019933:81040-81059 | Msa1377540:intron | 35.0% | |
| !!! | GTTGGTTCTACCTTTTTACA+TGG | - | tig0019933:81105-81124 | Msa1377540:intron | 35.0% |
| ATTCGTTGGTCCATGTAAAA+AGG | + | tig0019933:81118-81137 | None:intergenic | 35.0% | |
| TAATACGTGACAAAGCCTTA+TGG | + | tig0019933:81142-81161 | None:intergenic | 35.0% | |
| !! | ATTTGGTCGACTCTTTTTAC+TGG | - | tig0019933:81261-81280 | Msa1377540:intron | 35.0% |
| ! | CTTCAAGAAGGTATACACTT+TGG | + | tig0019933:81722-81741 | None:intergenic | 35.0% |
| AAAATCTTCAGCAAGTACCA+AGG | + | tig0019933:81844-81863 | None:intergenic | 35.0% | |
| ACAGCAAAATAACGTAGACA+CGG | - | tig0019933:82022-82041 | Msa1377540:intron | 35.0% | |
| !! | AACTCAAAGTTGATGGAATC+AGG | - | tig0019933:82072-82091 | Msa1377540:intron | 35.0% |
| !!! | CAGTTCAACCCTTGTTTTAT+AGG | + | tig0019933:82108-82127 | None:intergenic | 35.0% |
| AGTGGCAGAGCTATAATAAA+AGG | + | tig0019933:82207-82226 | None:intergenic | 35.0% | |
| ATTTGGCTGACAACAGAATT+TGG | - | tig0019933:82310-82329 | Msa1377540:intron | 35.0% | |
| TTTGGCTGACAACAGAATTT+GGG | - | tig0019933:82311-82330 | Msa1377540:intron | 35.0% | |
| !! | GGGATTTTGATAAACTCTTG+AGG | - | tig0019933:82331-82350 | Msa1377540:intron | 35.0% |
| AGGTCAAGAATGAGAATAAC+TGG | - | tig0019933:82351-82370 | Msa1377540:CDS | 35.0% | |
| ! | TCGCTGATTAAGTCCCTATT+TGG | + | tig0019933:79294-79313 | None:intergenic | 40.0% |
| TGCCAAAGAGAAAGAAAAGC+TGG | + | tig0019933:79424-79443 | None:intergenic | 40.0% | |
| ACGAAGCTGCATTTGCATTA+GGG | - | tig0019933:79475-79494 | Msa1377540:CDS | 40.0% | |
| AACTGAGGTTAATGCAGGTA+TGG | + | tig0019933:79520-79539 | None:intergenic | 40.0% | |
| GACTTAAACGGAGAAATAGC+AGG | + | tig0019933:79845-79864 | None:intergenic | 40.0% | |
| GCAGGATCAACAGACTTAAA+CGG | + | tig0019933:79857-79876 | None:intergenic | 40.0% | |
| GTTCTTCAGTTGGTCAACTA+AGG | - | tig0019933:79894-79913 | Msa1377540:intron | 40.0% | |
| TAGGGATTTACTTCTCGATG+AGG | - | tig0019933:80006-80025 | Msa1377540:intron | 40.0% | |
| TTTGCACTTCGAAATGATGG+TGG | - | tig0019933:80061-80080 | Msa1377540:intron | 40.0% | |
| !! | TGCTGCTATTGTTGATTCCT+TGG | - | tig0019933:80096-80115 | Msa1377540:intron | 40.0% |
| !! | GCTGCTATTGTTGATTCCTT+GGG | - | tig0019933:80097-80116 | Msa1377540:intron | 40.0% |
| ! | AAGCAGCTTTGTCTTGCAAT+TGG | + | tig0019933:80506-80525 | None:intergenic | 40.0% |
| AGATGTGAATGAGCATCCAA+TGG | - | tig0019933:80551-80570 | Msa1377540:intron | 40.0% | |
| CAATACCTGCAATTGAACCA+AGG | + | tig0019933:80599-80618 | None:intergenic | 40.0% | |
| !! | AAAAGTAGAGGTGTTGGAGA+AGG | - | tig0019933:80926-80945 | Msa1377540:intron | 40.0% |
| GACAATCTTTCTGTTCTCGT+TGG | - | tig0019933:81087-81106 | Msa1377540:intron | 40.0% | |
| ATGGACCAACGAATACCATA+AGG | - | tig0019933:81124-81143 | Msa1377540:intron | 40.0% | |
| ! | CAAAGCCTTATGGTATTCGT+TGG | + | tig0019933:81132-81151 | None:intergenic | 40.0% |
| AGTCAAACTTGGGTAGCATT+TGG | + | tig0019933:81442-81461 | None:intergenic | 40.0% | |
| CTGCCGAAAATTCTTCAAGA+AGG | + | tig0019933:81734-81753 | None:intergenic | 40.0% | |
| TGACAACTTTGTGCAACAAG+AGG | + | tig0019933:81765-81784 | None:intergenic | 40.0% | |
| AAGATCAGGGAAATCGTTTG+AGG | - | tig0019933:81812-81831 | Msa1377540:CDS | 40.0% | |
| ! | ATCGTTTGAGGTATACACCT+TGG | - | tig0019933:81824-81843 | Msa1377540:intron | 40.0% |
| ! | CTTGTCACTTCAATCTCATG+CGG | + | tig0019933:82001-82020 | None:intergenic | 40.0% |
| TAACGTAGACACGGAAAAAC+TGG | - | tig0019933:82031-82050 | Msa1377540:intron | 40.0% | |
| ! | TTATTATAGCTCTGCCACTG+TGG | - | tig0019933:82208-82227 | Msa1377540:intron | 40.0% |
| TAAAATGTCTCCTACCACAG+TGG | + | tig0019933:82225-82244 | None:intergenic | 40.0% | |
| TTCTGTTGTCAGCCAAATCT+TGG | + | tig0019933:82308-82327 | None:intergenic | 40.0% | |
| ! | AGAAAGTTGCTGATTGTGAC+AGG | - | tig0019933:82499-82518 | Msa1377540:exon | 40.0% |
| ! | GAAAGTTGCTGATTGTGACA+GGG | - | tig0019933:82500-82519 | Msa1377540:exon | 40.0% |
| AGAGTGTGGGCTTATGAAGA+CGG | + | tig0019933:78729-78748 | None:intergenic | 45.0% | |
| TTCTCTCTTCGCAACCTCAA+AGG | - | tig0019933:78890-78909 | Msa1377540:intron | 45.0% | |
| GGAGTAACCTAGAATAAGGG+CGG | + | tig0019933:78930-78949 | None:intergenic | 45.0% | |
| CACGAAGCTGCATTTGCATT+AGG | - | tig0019933:79474-79493 | Msa1377540:CDS | 45.0% | |
| ACTACCTCATGGCGAACAAT+GGG | + | tig0019933:79564-79583 | None:intergenic | 45.0% | |
| TACTACCTCATGGCGAACAA+TGG | + | tig0019933:79565-79584 | None:intergenic | 45.0% | |
| ACCAACTGAAGAACAAGAGC+TGG | + | tig0019933:79888-79907 | None:intergenic | 45.0% | |
| ! | TAAAGCACTCTTGGAACCCA+AGG | + | tig0019933:80116-80135 | None:intergenic | 45.0% |
| GCATCCAATGGTTAGACATG+AGG | - | tig0019933:80563-80582 | Msa1377540:intron | 45.0% | |
| GTCTGTTTAGTCTCTGCATC+TGG | - | tig0019933:81219-81238 | Msa1377540:CDS | 45.0% | |
| TTTGTGCAACAAGAGGCTCT+GGG | + | tig0019933:81758-81777 | None:intergenic | 45.0% | |
| CGCATGAGATTGAAGTGACA+AGG | - | tig0019933:81999-82018 | Msa1377540:intron | 45.0% | |
| !!! | GTTTTAAATTAATAATATTA+GGG | - | tig0019933:79988-80007 | Msa1377540:intron | 5.0% |
| !! | GAAGAGTGCTCTGAAGCGTT+CGG | + | tig0019933:78873-78892 | None:intergenic | 50.0% |
| ATGGCGAACAATGGGATGCA+AGG | + | tig0019933:79556-79575 | None:intergenic | 50.0% | |
| GCTACTACGGTACTACCTCA+TGG | + | tig0019933:79575-79594 | None:intergenic | 50.0% | |
| GGATTCTGATCCAGCTCAAG+AGG | - | tig0019933:79742-79761 | Msa1377540:intron | 50.0% | |
| GTTTCTCGAACCTCTTGAGC+TGG | + | tig0019933:79755-79774 | None:intergenic | 50.0% | |
| ACTGAAGAACAAGAGCTGGC+CGG | + | tig0019933:79884-79903 | None:intergenic | 50.0% | |
| GCCAGCTCTTGTTCTTCAGT+TGG | - | tig0019933:79884-79903 | Msa1377540:intron | 50.0% | |
| GCAGCCTCATGTCTAACCAT+TGG | + | tig0019933:80570-80589 | None:intergenic | 50.0% | |
| GAAGCCCTTGGTTCAATTGC+AGG | - | tig0019933:80591-80610 | Msa1377540:intron | 50.0% | |
| AAAGTTGGGGTAGCTGCCAA+AGG | + | tig0019933:81342-81361 | None:intergenic | 50.0% | |
| CTGTCATGTGACTCTACCAG+AGG | + | tig0019933:81571-81590 | None:intergenic | 50.0% | |
| CTTTGTGCAACAAGAGGCTC+TGG | + | tig0019933:81759-81778 | None:intergenic | 50.0% | |
| CAATTGGAGGACGCATGAAC+AGG | + | tig0019933:81922-81941 | None:intergenic | 50.0% | |
| ! | TATAGCTCTGCCACTGTGGT+AGG | - | tig0019933:82212-82231 | Msa1377540:intron | 50.0% |
| ! | AGTTGCTGATTGTGACAGGG+TGG | - | tig0019933:82503-82522 | Msa1377540:exon | 50.0% |
| GGGTGGAGAGACTTTCGTTT+CGG | - | tig0019933:82520-82539 | Msa1377540:five_prime_UTR | 50.0% | |
| !! | GAAGACGGTGGCGGAATTGA+CGG | + | tig0019933:78714-78733 | None:intergenic | 55.0% |
| TGGGCTTATGAAGACGGTGG+CGG | + | tig0019933:78723-78742 | None:intergenic | 55.0% | |
| GTGTGGGCTTATGAAGACGG+TGG | + | tig0019933:78726-78745 | None:intergenic | 55.0% | |
| CGCTTCGTGCTCATCAGAGA+TGG | - | tig0019933:78802-78821 | Msa1377540:intron | 55.0% | |
| GTTCCTGTGCGAGTTGCTGT+TGG | - | tig0019933:78829-78848 | Msa1377540:intron | 55.0% | |
| AGTCCAACAGCAACTCGCAC+AGG | + | tig0019933:78835-78854 | None:intergenic | 55.0% | |
| ! | GAAGCGTTCGGAGATTGGCT+GGG | + | tig0019933:78861-78880 | None:intergenic | 55.0% |
| ! | TGAAGCGTTCGGAGATTGGC+TGG | + | tig0019933:78862-78881 | None:intergenic | 55.0% |
| !! | GCTCTGAAGCGTTCGGAGAT+TGG | + | tig0019933:78866-78885 | None:intergenic | 55.0% |
| TAGAATAAGGGCGGTGCGAG+GGG | + | tig0019933:78921-78940 | None:intergenic | 55.0% | |
| CTAGAATAAGGGCGGTGCGA+GGG | + | tig0019933:78922-78941 | None:intergenic | 55.0% | |
| GCATCCCATTGTTCGCCATG+AGG | - | tig0019933:79557-79576 | Msa1377540:intron | 55.0% | |
| ! | GCTTAGGCAGCTGAAGCACT+AGG | - | tig0019933:79674-79693 | Msa1377540:intron | 55.0% |
| ! | GCTGAAGCACTAGGCGCTAT+TGG | - | tig0019933:79683-79702 | Msa1377540:intron | 55.0% |
| GTCTGTTGATCCTGCAGCAC+CGG | - | tig0019933:79862-79881 | Msa1377540:intron | 55.0% | |
| ! | TTGACGGTGGCGGTGTCTGA+CGG | + | tig0019933:78698-78717 | None:intergenic | 60.0% |
| CCTAGAATAAGGGCGGTGCG+AGG | + | tig0019933:78923-78942 | None:intergenic | 60.0% | |
| CCTCGCACCGCCCTTATTCT+AGG | - | tig0019933:78920-78939 | Msa1377540:intron | 60.0% | |
| CATGAGGCTGCTGAAGCCCT+TGG | - | tig0019933:80579-80598 | Msa1377540:intron | 60.0% | |
| CGGTGTCTGACGGAGGCGAT+CGG | + | tig0019933:78688-78707 | None:intergenic | 65.0% | |
| !! | GGTGGCGGAATTGACGGTGG+CGG | + | tig0019933:78708-78727 | None:intergenic | 65.0% |
| !! | GACGGTGGCGGAATTGACGG+TGG | + | tig0019933:78711-78730 | None:intergenic | 65.0% |
| AATAAGGGCGGTGCGAGGGG+CGG | + | tig0019933:78918-78937 | None:intergenic | 65.0% | |
| CGGAGGCGATCGGCGAGTTC+AGG | + | tig0019933:78678-78697 | None:intergenic | 70.0% | |
| ! | ACGGTGGCGGTGTCTGACGG+AGG | + | tig0019933:78695-78714 | None:intergenic | 70.0% |
| ATAAGGGCGGTGCGAGGGGC+GGG | + | tig0019933:78917-78936 | None:intergenic | 70.0% | |
| !! | CAAGAGCTGGCCGGTGCTGC+AGG | + | tig0019933:79875-79894 | None:intergenic | 70.0% |
| TGCGAGGGGCGGGGCCTTTG+AGG | + | tig0019933:78907-78926 | None:intergenic | 75.0% | |
| TAAGGGCGGTGCGAGGGGCG+GGG | + | tig0019933:78916-78935 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019933 | gene | 78669 | 82615 | 78669 | ID=Msa1377540;Name=Msa1377540 |
| tig0019933 | mRNA | 78669 | 82615 | 78669 | ID=Msa1377540-mRNA-1;Parent=Msa1377540;Name=Msa1377540-mRNA-1;_AED=0.16;_eAED=0.16;_QI=76|1|1|1|0.75|0.66|9|232|317 |
| tig0019933 | exon | 78669 | 78797 | 78669 | ID=Msa1377540-mRNA-1:exon:5705;Parent=Msa1377540-mRNA-1 |
| tig0019933 | exon | 79232 | 79367 | 79232 | ID=Msa1377540-mRNA-1:exon:5704;Parent=Msa1377540-mRNA-1 |
| tig0019933 | exon | 79451 | 79569 | 79451 | ID=Msa1377540-mRNA-1:exon:5703;Parent=Msa1377540-mRNA-1 |
| tig0019933 | exon | 80672 | 80798 | 80672 | ID=Msa1377540-mRNA-1:exon:5702;Parent=Msa1377540-mRNA-1 |
| tig0019933 | exon | 81137 | 81275 | 81137 | ID=Msa1377540-mRNA-1:exon:5701;Parent=Msa1377540-mRNA-1 |
| tig0019933 | exon | 81369 | 81604 | 81369 | ID=Msa1377540-mRNA-1:exon:5700;Parent=Msa1377540-mRNA-1 |
| tig0019933 | exon | 81706 | 81839 | 81706 | ID=Msa1377540-mRNA-1:exon:5699;Parent=Msa1377540-mRNA-1 |
| tig0019933 | exon | 82343 | 82555 | 82343 | ID=Msa1377540-mRNA-1:exon:5698;Parent=Msa1377540-mRNA-1 |
| tig0019933 | exon | 82587 | 82615 | 82587 | ID=Msa1377540-mRNA-1:exon:5697;Parent=Msa1377540-mRNA-1 |
| tig0019933 | five_prime_UTR | 82587 | 82615 | 82587 | ID=Msa1377540-mRNA-1:five_prime_utr;Parent=Msa1377540-mRNA-1 |
| tig0019933 | five_prime_UTR | 82509 | 82555 | 82509 | ID=Msa1377540-mRNA-1:five_prime_utr;Parent=Msa1377540-mRNA-1 |
| tig0019933 | CDS | 82343 | 82508 | 82343 | ID=Msa1377540-mRNA-1:cds;Parent=Msa1377540-mRNA-1 |
| tig0019933 | CDS | 81706 | 81839 | 81706 | ID=Msa1377540-mRNA-1:cds;Parent=Msa1377540-mRNA-1 |
| tig0019933 | CDS | 81369 | 81604 | 81369 | ID=Msa1377540-mRNA-1:cds;Parent=Msa1377540-mRNA-1 |
| tig0019933 | CDS | 81137 | 81275 | 81137 | ID=Msa1377540-mRNA-1:cds;Parent=Msa1377540-mRNA-1 |
| tig0019933 | CDS | 80672 | 80798 | 80672 | ID=Msa1377540-mRNA-1:cds;Parent=Msa1377540-mRNA-1 |
| tig0019933 | CDS | 79451 | 79569 | 79451 | ID=Msa1377540-mRNA-1:cds;Parent=Msa1377540-mRNA-1 |
| tig0019933 | CDS | 79335 | 79367 | 79335 | ID=Msa1377540-mRNA-1:cds;Parent=Msa1377540-mRNA-1 |
| tig0019933 | three_prime_UTR | 79232 | 79334 | 79232 | ID=Msa1377540-mRNA-1:three_prime_utr;Parent=Msa1377540-mRNA-1 |
| tig0019933 | three_prime_UTR | 78669 | 78797 | 78669 | ID=Msa1377540-mRNA-1:three_prime_utr;Parent=Msa1377540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
