AlfalfaGEDB | Msa0588230

M. sativa cultivar zhongmu-4 / Msa0588230

KEGG: K11991
GO: GO:0002097 GO:0002100 GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006382 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016553 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:1901360
PFAM: PF14437.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0588230	XP_039688878.1	93.571	1291	55	2	1	1264	1	1290	0.0	2454

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0588230	sp\|Q9S7I0\|TADA_ARATH	41.997	681	283	20	657	1264	666	1307	1.62e-119	406

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0588230	A0A396HZ52	93.546	1286	55	2	1	1259	1	1285	0.0	2442

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa0588230	0.812564	3.979338e-51	-8.615850e-47
Msa0015120	Msa0588230	0.805244	1.465945e-49	-8.615850e-47
Msa0017510	Msa0588230	0.849174	3.830937e-60	-8.615850e-47
Msa0020430	Msa0588230	0.804000	2.664623e-49	-8.615850e-47
Msa0020930	Msa0588230	0.842189	3.010426e-58	-8.615850e-47
Msa0025330	Msa0588230	0.814486	1.503422e-51	-8.615850e-47
Msa0028640	Msa0588230	0.801675	8.050038e-49	-8.615850e-47
Msa0031340	Msa0588230	0.829399	5.261099e-55	-8.615850e-47
Msa0032110	Msa0588230	0.800087	1.698638e-48	-8.615850e-47
Msa0034110	Msa0588230	0.803256	3.801275e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0588230	MtrunA17_Chr4g0004281	93.546	1286	55	2	1	1259	1	1285	0.0	2442
Msa0588230	MtrunA17_Chr4g0069501	42.000	100	57	1	1071	1169	31	130	4.46e-16	77.8
Msa0588230	MtrunA17_Chr7g0254211	33.136	169	84	5	1073	1229	8	159	3.81e-15	75.1
Msa0588230	MtrunA17_Chr2g0302351	43.000	100	56	1	1071	1169	30	129	1.02e-14	73.9
Msa0588230	MtrunA17_Chr1g0191001	37.000	100	62	1	1071	1169	14	113	2.54e-13	69.3
Msa0588230	MtrunA17_Chr1g0190991	41.053	95	53	2	1075	1169	36	127	2.50e-12	67.0
Msa0588230	MtrunA17_Chr1g0190971	38.095	105	61	3	1075	1178	23	124	1.36e-11	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0588230	AT1G68720.1	41.997	681	283	20	657	1264	666	1307	1.65e-120	406
Msa0588230	AT1G48175.1	32.143	168	86	4	1074	1229	12	163	5.93e-17	80.9
Msa0588230	AT1G48175.4	32.143	168	86	4	1074	1229	12	163	5.93e-17	80.9
Msa0588230	AT5G28050.1	43.564	101	56	1	1070	1169	29	129	1.02e-16	80.1
Msa0588230	AT5G28050.2	43.564	101	56	1	1070	1169	48	148	1.23e-16	80.5
Msa0588230	AT5G28050.3	43.564	101	56	1	1070	1169	134	234	2.87e-16	81.3
Msa0588230	AT1G48175.6	29.936	157	82	4	1085	1229	8	148	9.26e-12	65.5
Msa0588230	AT1G48175.2	29.936	157	82	4	1085	1229	8	148	9.26e-12	65.5
Msa0588230	AT1G48175.5	29.936	157	82	4	1085	1229	8	148	9.26e-12	65.5
Msa0588230	AT1G48175.3	29.936	157	82	4	1085	1229	8	148	9.26e-12	65.5

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Find 286 sgRNAs with CRISPR-Local

Find 672 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTTGGTGGCAAGGA+AGG	0.482971	4_2:-10412326	Msa0588230:CDS
AAACAACTACTCCCTAGGAA+TGG	0.575002	4_2:-10405155	Msa0588230:three_prime_UTR
AAACATAGCAGGACTTCTTC+CGG	0.441312	4_2:+10411439	None:intergenic
AAACATTTGGTGGCAAGGAA+GGG	0.570464	4_2:-10412325	Msa0588230:CDS
AAACCAATTGTTAAAAGAAC+AGG	0.415902	4_2:-10411011	Msa0588230:CDS
AAACGTCGTGCGCCTTCTTT+TGG	0.268370	4_2:+10412810	None:intergenic
AAAGAAAACATTTGGTGGCA+AGG	0.537125	4_2:-10412330	Msa0588230:CDS
AAAGAACAGGAAGGTCCATG+TGG	0.672842	4_2:-10410998	Msa0588230:CDS
AAAGAACCATCTGTTGGGCA+TGG	0.602087	4_2:-10411074	Msa0588230:CDS
AAAGGAAAACATATTGAAGT+TGG	0.467406	4_2:-10410729	Msa0588230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATTCCCTTTATCTTTCAA+TGG	-	chr4_2:10404722-10404741	Msa0588230:three_prime_UTR	30.0%
AGTAGCCATTGAAAGATAAA+GGG	+	chr4_2:10404730-10404749	None:intergenic	30.0%
TGTCAAATCTTTCATACCAT+AGG	+	chr4_2:10404757-10404776	None:intergenic	30.0%
ATTTAGAAGACAAGGCTTTA+CGG	+	chr4_2:10404849-10404868	None:intergenic	30.0%
AAGTAGAAGAAGCAGAATAA+AGG	-	chr4_2:10405021-10405040	Msa0588230:three_prime_UTR	30.0%
ATTCATCAGAAGCAAATGAA+GGG	+	chr4_2:10405096-10405115	None:intergenic	30.0%
TGAAAACACATTCTTCGATT+TGG	+	chr4_2:10405173-10405192	None:intergenic	30.0%
CGAAATAAATGACACTGAAA+AGG	-	chr4_2:10405333-10405352	Msa0588230:intron	30.0%
AACCAATATATGCATCGAAA+AGG	-	chr4_2:10405697-10405716	Msa0588230:CDS	30.0%
TTCATCTTTCGTAGAACATT+TGG	-	chr4_2:10405792-10405811	Msa0588230:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	10404671	10413725	10404671	ID=Msa0588230;Name=Msa0588230
chr4_2	mRNA	10404671	10413725	10404671	ID=Msa0588230-mRNA-1;Parent=Msa0588230;Name=Msa0588230-mRNA-1;_AED=0.06;_eAED=0.11;_QI=0\|0.8\|0.66\|1\|0.8\|0.83\|6\|543\|1264
chr4_2	exon	10404671	10405205	10404671	ID=Msa0588230-mRNA-1:exon:2965;Parent=Msa0588230-mRNA-1
chr4_2	exon	10405491	10405748	10405491	ID=Msa0588230-mRNA-1:exon:2964;Parent=Msa0588230-mRNA-1
chr4_2	exon	10406585	10406712	10406585	ID=Msa0588230-mRNA-1:exon:2963;Parent=Msa0588230-mRNA-1
chr4_2	exon	10410048	10410135	10410048	ID=Msa0588230-mRNA-1:exon:2962;Parent=Msa0588230-mRNA-1
chr4_2	exon	10410216	10412056	10410216	ID=Msa0588230-mRNA-1:exon:2961;Parent=Msa0588230-mRNA-1
chr4_2	exon	10412238	10413725	10412238	ID=Msa0588230-mRNA-1:exon:2960;Parent=Msa0588230-mRNA-1
chr4_2	CDS	10412238	10413725	10412238	ID=Msa0588230-mRNA-1:cds;Parent=Msa0588230-mRNA-1
chr4_2	CDS	10410216	10412056	10410216	ID=Msa0588230-mRNA-1:cds;Parent=Msa0588230-mRNA-1
chr4_2	CDS	10410048	10410135	10410048	ID=Msa0588230-mRNA-1:cds;Parent=Msa0588230-mRNA-1
chr4_2	CDS	10406585	10406712	10406585	ID=Msa0588230-mRNA-1:cds;Parent=Msa0588230-mRNA-1
chr4_2	CDS	10405499	10405748	10405499	ID=Msa0588230-mRNA-1:cds;Parent=Msa0588230-mRNA-1
chr4_2	three_prime_UTR	10405491	10405498	10405491	ID=Msa0588230-mRNA-1:three_prime_utr;Parent=Msa0588230-mRNA-1
chr4_2	three_prime_UTR	10404671	10405205	10404671	ID=Msa0588230-mRNA-1:three_prime_utr;Parent=Msa0588230-mRNA-1

Gene Sequence

>Msa0588230

ATGTACAACGCGTATTTTTCTTCAACCATATATGGTGTCAGCTGCAAAGAATCATTCCCTTTATCTTTCAATGGCTACTCGAACCTATGGTATGAAAGATTTGACAGAACCTCGTCAAACTGTTTGTCATGCCGTGGTTGTTGTGACTGTTGTGCTCTCTCCACCTATAGAGTACCCGTAAAGCCTTGTCTTCTAAATGGGTTGAGGCAGTCCACTCTTCTTCAATTGTCAGCAACTAGGAGGTTTATTTTCAGAGGTGAAAACCTGTACTGTTCTCGAGTTCCTTATGGTCTTGTTAGAGGTTCTTGTGAGCTTAAGTGCTCTACCAATGAAAGAAATGTTTGCAATACAAGTAGAAGAAGCAGAATAAAGGAAAGATGTGTTTGCTCAGCCTCACAGAAAGGGAGAGAAAGAGAAGATTTCCCTTCATTTGCTTCTGATGAATCTGAATTAGTTCTCAGCTTTTTGAGTGAGGAAGTAGATAAAGATGCTACATGTACCAAATCGAAGAATGTGTTTTCATCCAACAGAACGGAAGCCAAGAAGAAGATAAATAATTTGAGTAGAGAGAGACATTTCAATTTGAGTGAGAAAACAAAAACAAAGAAAAAGGGAAATTTGAAGCAACATGAAGTATCCTCCATAGACTTGAGAAGAGAATGCGAAATAAATGACACTGAAAAGGAAGCCTTTACAAAAGGTGAAAACTGTAAGAAACAGAGAGATATGTCTAGCTGTTCATCTTATTACACACTCTCGTCCGGAGATTTTGAGAGTGACATGGAAGTGCAGCATAATATGGGTTTGGAAGAATTTTCACTGGGATATGAGGAGGATGAAGCAAACCGCGTGGAGGGAAACGTAAAGGAAGAATTCAACAGGCAAAGAGTTGACCAAAAGAAGGCGCACGACGTTTCAAATAAAGAAAGAATTGTACTTGGTGCAGATATTGATTGGAATATAAGAAAGAAGTCCGAAAAAATGCTGACCGAGGGAACCTTTCAGGAAACTGATACCACAAGAGAGAACCAATATATGCATCGAAAAGGATCTACAATGCATGAATCTGGTTATGGAAAAGCTTCTATTTCACAGAAGCAAGTCCACAGTGAGGAAGATAATTCATCTTTCGTAGAACATTTGGATAAGAAAACAAACAAGGCATACATTCAAACAGGAAACAGAAGAAAGAATCAATCTTCATATGCACAAGAGTCAGGTCGCGATGAAATTGAGACAACTTTATTATCAGGAAAAAGATTCAGTGGCAGTGAAGAGAACCTTGAAATATCCAACTCATCTAAGAAAACAAGTGACAAACATGAAAAGTTTGTTGGTTCTACTTCTACCACCGGAACGGAAAGTTTGAAATCAAAGAAAACATTTGGTGGCAAGGAAGGGAGTCTTGGGATATCAGAAACACGTTTGCAGGAAAGAAGCGATAAACATAAAAAATTTATTGGTTCTAATTCTACCACAACAGAGGATAACATGGGAGAGAAAAAGAATTCGGTTTTGAGTTCTGCTCAGGGAGTGGAGTTGCAACACCGTAAAGGAGAGAAGACCATTGCACATGATAAAGACAGAAGAAAATCCCAACTGTTTTCTGAAGTATCACAAGTTCATGGGAGTCATGTTGAAGATACATCTATCCCGATGTCTAAAACTAGTGTGAAGAACCAGGAAGAAATATCATACTTAAGTTCACATGAAAGGGATACACGACTCCAAACTGATAGGAGGAGAACTCAGAGTGCTCAACATAGCAAAGGATATGAACATGTCAGCACTTTACTGGAAGGCTTTGACAGTGACGAAAAGCAAGTCTCAAGTTCTCAAATAACTTCTGAGAAAATGAGACTTATGCCAAAAAGTAAATCGGCATCAGCTGTTAAAACTAGAGAAAGTTCTTCCCAAACTGAAGAAAGGATTTTTGAATTTGCTAATGACCACCGAAGATCTAGGAACCCTTCTTCCCAAATGGGTAGAGTTTCAGCTCATGTTGAACAAACTGCTGGGTTTGAAAGCCCTGATATCTACCTTGAAGCTTCAGAAAGTGGCTCTTCTGCTTTGTATGCCAATTCCGGAAGAAGTCCTGCTATGTTTTCAGGATCACATTCCCAATATGAAAGTGATAAGTCATATAGTGAACCTTCTATTTTCATGACTCCAGAGGATGTGCTTGGTTCAGCTAGTCGTTTTGAGGAATCATCAAAACAGTTTGTTGATGAGTTTGTGGAGAGGGTCAGGCATGAAGTCACAACTTCAGAAAGACAACAAGAGATAGAAGTTGCTGGAACAAAGTTGGCCTCTGATGTTGAGGATAATCAGATGAACAGTTCAAGGCAACAAGGCACTCAAAATGACTCTCAGTCAAAGAGTCACGAGTCCAGCCATTCCACTGGGTTTCTGGGCGCCAAAGGAATTTCTGACGAAATGTGGGATGTAAAAGAACCATCTGTTGGGCATGGTCTATCATCTGAAGAACCAGAGATCAACAATGAAACTGCAAAACCAATTGTTAAAAGAACAGGAAGGTCCATGTGGGGTATGCTTTCTGATATTGTTCAATTACGTTGGAGTTCACGTGCTGGTTCCTCCACTTCTTCTGGGAGATCAGGTGACAGAAACTCACCAAACAAATCTGACAGTGAGACATGGCATTCTGGGCAGGAGCGTGAGGAAACTGGTAAAAGTGTGCTACCACAAGCCATGACTTCTGATAAATCAAAACCAGGTACTCATTATACCCAAAGTGAGGGAGATGTGTCTGACACTAAAATATTGAAGGACAAAGGAAAACATATTGAAGTTGGATCATCTTCTCCAAATAAATTGGAGAGTGGATCAACATCAATAGGCACCTCATATGCTGCTAGAGAGGAATTTTCTAGTCGAACTGAAAATGAAAAAGATTTGAAAGTCACTACTTCTGGCTTAAAAAAAATGGAGTCACCAAATCCATTATCTATTAGAGGGCAACCTATTGCAGCAGAAATCGTAAATATCGGTGGATCTGACATTTCCAGAACTGAATCAGTGATGCCGATAAAAGAACCCGTTGCTCCAGTGAAGACTGAAATGTCTGGCTCAGACAGAAAGGATGGAGAGTTGAAACAACGGAAGTTTCAGCGGAAAAGTCAGGTTTCAAGAGATAGGTTTGATGACTGGGAAGAAGCCTATAATGTTGAACTTGAGCAGCGACGAACTGATGAATTGTTCATGAAGGAAGCACTTTTGGAAGCCAGAAAGGCCGGTGATATTTGGGAGGTCCCTGTTGGTGCTGTTCTTGTGCAGCATGGAAAAATTATTGCAAGAGGATGCAACTTAGTAGAAGAGTTACGGGACTCCACAGCTCACGCAGAGATGGTCTGTATACGAGAAGCTTCAAAACATCTCAACTCATGGAGACTATCAGAAACTACACTTTATGTAACGCTTGAACCCTGTGCAATGTGCGCTGGTGCCATTCTTCAGGCAAGGGTAGATACTGTTGTGTGGGGAGCTCCCAATAAGCTTCTTGGAGCTGATGGCAGCTGGGTTAGGCTTTTCCCTGATGGAGGAGAAAGTGTCTCAGAAGCAAGGGATATACCTCCTGCACCAGTTCACCCGTTCCATCCGAAAATAAAAATAAGAAGAGGAGTATTGGCGACAGAGTGCGCAGATGTAATGCAGCAATTTTTTCAACTGAGAAGGCGAAAGAAGAAAGAAGATCCACTTCCTATTACTACCCATCATCCTTCCAAGTTACTCAATAAGATACAAGACATCTTTCATGTAATGTTCTGTTTGTAA

Protein sequence

>Msa0588230

MYNAYFSSTIYGVSCKESFPLSFNGYSNLWYERFDRTSSNCLSCRGCCDCCALSTYRVPVKPCLLNGLRQSTLLQLSATRRFIFRGENLYCSRVPYGLVRGSCELKCSTNERNVCNTSRRSRIKERCVCSASQKGREREDFPSFASDESELVLSFLSEEVDKDATCTKSKNVFSSNRTEAKKKINNLSRERHFNLSEKTKTKKKGNLKQHEVSSIDLRRECEINDTEKEAFTKGENCKKQRDMSSCSSYYTLSSGDFESDMEVQHNMGLEEFSLGYEEDEANRVEGNVKEEFNRQRVDQKKAHDVSNKERIVLGADIDWNIRKKSEKMLTEGTFQETDTTRENQYMHRKGSTMHESGYGKASISQKQVHSEEDNSSFVEHLDKKTNKAYIQTGNRRKNQSSYAQESGRDEIETTLLSGKRFSGSEENLEISNSSKKTSDKHEKFVGSTSTTGTESLKSKKTFGGKEGSLGISETRLQERSDKHKKFIGSNSTTTEDNMGEKKNSVLSSAQGVELQHRKGEKTIAHDKDRRKSQLFSEVSQVHGSHVEDTSIPMSKTSVKNQEEISYLSSHERDTRLQTDRRRTQSAQHSKGYEHVSTLLEGFDSDEKQVSSSQITSEKMRLMPKSKSASAVKTRESSSQTEERIFEFANDHRRSRNPSSQMGRVSAHVEQTAGFESPDIYLEASESGSSALYANSGRSPAMFSGSHSQYESDKSYSEPSIFMTPEDVLGSASRFEESSKQFVDEFVERVRHEVTTSERQQEIEVAGTKLASDVEDNQMNSSRQQGTQNDSQSKSHESSHSTGFLGAKGISDEMWDVKEPSVGHGLSSEEPEINNETAKPIVKRTGRSMWGMLSDIVQLRWSSRAGSSTSSGRSGDRNSPNKSDSETWHSGQEREETGKSVLPQAMTSDKSKPGTHYTQSEGDVSDTKILKDKGKHIEVGSSSPNKLESGSTSIGTSYAAREEFSSRTENEKDLKVTTSGLKKMESPNPLSIRGQPIAAEIVNIGGSDISRTESVMPIKEPVAPVKTEMSGSDRKDGELKQRKFQRKSQVSRDRFDDWEEAYNVELEQRRTDELFMKEALLEARKAGDIWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMVCIREASKHLNSWRLSETTLYVTLEPCAMCAGAILQARVDTVVWGAPNKLLGADGSWVRLFPDGGESVSEARDIPPAPVHPFHPKIKIRRGVLATECADVMQQFFQLRRRKKKEDPLPITTHHPSKLLNKIQDIFHVMFCL*