Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1049510 | XP_003621371.1 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 4.25e-81 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1049510 | sp|Q75GT2|MUB1_ORYSJ | 65.546 | 119 | 36 | 3 | 3 | 119 | 4 | 119 | 3.05e-49 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1049510 | G7L472 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 2.03e-81 | 243 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa1049510 | -0.807153 | 5.808229e-50 | -8.615850e-47 |
| Msa0016670 | Msa1049510 | -0.819379 | 1.197631e-52 | -8.615850e-47 |
| Msa0032840 | Msa1049510 | 0.849068 | 4.099118e-60 | -8.615850e-47 |
| Msa0041620 | Msa1049510 | -0.852378 | 4.800200e-61 | -8.615850e-47 |
| Msa0053110 | Msa1049510 | -0.813478 | 2.508131e-51 | -8.615850e-47 |
| Msa0073670 | Msa1049510 | -0.853009 | 3.171066e-61 | -8.615850e-47 |
| Msa0095380 | Msa1049510 | -0.816739 | 4.734259e-52 | -8.615850e-47 |
| Msa0096670 | Msa1049510 | -0.833890 | 4.111744e-56 | -8.615850e-47 |
| Msa0114540 | Msa1049510 | 0.828957 | 6.734333e-55 | -8.615850e-47 |
| Msa0638690 | Msa1049510 | -0.804309 | 2.297685e-49 | -8.615850e-47 |
| Msa0639120 | Msa1049510 | -0.809619 | 1.729985e-50 | -8.615850e-47 |
| Msa0642650 | Msa1049510 | -0.807785 | 4.265355e-50 | -8.615850e-47 |
| Msa0669850 | Msa1049510 | -0.808843 | 2.537980e-50 | -8.615850e-47 |
| Msa0670980 | Msa1049510 | -0.812202 | 4.772673e-51 | -8.615850e-47 |
| Msa0678860 | Msa1049510 | -0.811935 | 5.458964e-51 | -8.615850e-47 |
| Msa0684500 | Msa1049510 | -0.810867 | 9.311865e-51 | -8.615850e-47 |
| Msa0687630 | Msa1049510 | -0.825623 | 4.237176e-54 | -8.615850e-47 |
| Msa0692080 | Msa1049510 | -0.811055 | 8.475215e-51 | -8.615850e-47 |
| Msa0696620 | Msa1049510 | -0.824022 | 1.010671e-53 | -8.615850e-47 |
| Msa0697690 | Msa1049510 | -0.814492 | 1.498581e-51 | -8.615850e-47 |
| Msa0703230 | Msa1049510 | -0.808999 | 2.350340e-50 | -8.615850e-47 |
| Msa0713820 | Msa1049510 | -0.802088 | 6.623423e-49 | -8.615850e-47 |
| Msa0743800 | Msa1049510 | -0.800219 | 1.596869e-48 | -8.615850e-47 |
| Msa0747780 | Msa1049510 | -0.806497 | 7.991917e-50 | -8.615850e-47 |
| Msa0755340 | Msa1049510 | -0.812606 | 3.896031e-51 | -8.615850e-47 |
| Msa0778320 | Msa1049510 | -0.810534 | 1.099000e-50 | -8.615850e-47 |
| Msa0787750 | Msa1049510 | -0.802220 | 6.220191e-49 | -8.615850e-47 |
| Msa0797750 | Msa1049510 | -0.827962 | 1.170821e-54 | -8.615850e-47 |
| Msa0798000 | Msa1049510 | 0.812491 | 4.128381e-51 | -8.615850e-47 |
| Msa0824640 | Msa1049510 | -0.814689 | 1.355421e-51 | -8.615850e-47 |
| Msa0835280 | Msa1049510 | -0.818720 | 1.691662e-52 | -8.615850e-47 |
| Msa0837350 | Msa1049510 | 0.803707 | 3.065238e-49 | -8.615850e-47 |
| Msa0137610 | Msa1049510 | 0.806522 | 7.896137e-50 | -8.615850e-47 |
| Msa0141830 | Msa1049510 | -0.809979 | 1.447332e-50 | -8.615850e-47 |
| Msa0143080 | Msa1049510 | -0.846289 | 2.384595e-59 | -8.615850e-47 |
| Msa0143240 | Msa1049510 | 0.806529 | 7.872018e-50 | -8.615850e-47 |
| Msa0172350 | Msa1049510 | -0.813915 | 2.009630e-51 | -8.615850e-47 |
| Msa0172960 | Msa1049510 | 0.829050 | 6.393163e-55 | -8.615850e-47 |
| Msa0186890 | Msa1049510 | -0.807057 | 6.088235e-50 | -8.615850e-47 |
| Msa0194970 | Msa1049510 | -0.808944 | 2.414320e-50 | -8.615850e-47 |
| Msa0222920 | Msa1049510 | -0.807093 | 5.981954e-50 | -8.615850e-47 |
| Msa0230550 | Msa1049510 | 0.844448 | 7.512150e-59 | -8.615850e-47 |
| Msa0235980 | Msa1049510 | -0.805375 | 1.375945e-49 | -8.615850e-47 |
| Msa0236980 | Msa1049510 | -0.851267 | 9.922257e-61 | -8.615850e-47 |
| Msa0378980 | Msa1049510 | -0.803928 | 2.758559e-49 | -8.615850e-47 |
| Msa0402330 | Msa1049510 | -0.803638 | 3.168394e-49 | -8.615850e-47 |
| Msa0413450 | Msa1049510 | -0.805837 | 1.100604e-49 | -8.615850e-47 |
| Msa0414950 | Msa1049510 | 0.804091 | 2.550611e-49 | -8.615850e-47 |
| Msa0422830 | Msa1049510 | -0.809492 | 1.842211e-50 | -8.615850e-47 |
| Msa0422910 | Msa1049510 | -0.815986 | 6.978352e-52 | -8.615850e-47 |
| Msa0436280 | Msa1049510 | 0.805836 | 1.101393e-49 | -8.615850e-47 |
| Msa0437690 | Msa1049510 | 0.807581 | 4.712502e-50 | -8.615850e-47 |
| Msa0469910 | Msa1049510 | 0.814209 | 1.731289e-51 | -8.615850e-47 |
| Msa1008060 | Msa1049510 | 0.882928 | 6.898570e-71 | -8.615850e-47 |
| Msa1012810 | Msa1049510 | -0.812078 | 5.079542e-51 | -8.615850e-47 |
| Msa1013770 | Msa1049510 | -0.801080 | 1.066003e-48 | -8.615850e-47 |
| Msa1049510 | Msa1082700 | -0.808253 | 3.392046e-50 | -8.615850e-47 |
| Msa1049510 | Msa1126770 | -0.816250 | 6.092640e-52 | -8.615850e-47 |
| Msa1049510 | Msa1127890 | -0.807652 | 4.552542e-50 | -8.615850e-47 |
| Msa1049510 | Msa1134110 | -0.844441 | 7.547385e-59 | -8.615850e-47 |
| Msa1049510 | Msa1139810 | -0.807101 | 5.956889e-50 | -8.615850e-47 |
| Msa1049510 | Msa1165870 | -0.822836 | 1.913924e-53 | -8.615850e-47 |
| Msa1049510 | Msa1166010 | -0.807018 | 6.202538e-50 | -8.615850e-47 |
| Msa1049510 | Msa1183660 | -0.819807 | 9.566529e-53 | -8.615850e-47 |
| Msa1049510 | Msa1184370 | -0.812063 | 5.117501e-51 | -8.615850e-47 |
| Msa1049510 | Msa1193950 | 0.856770 | 2.568963e-62 | -8.615850e-47 |
| Msa1049510 | Msa1227690 | -0.814007 | 1.917975e-51 | -8.615850e-47 |
| Msa1049510 | Msa1228890 | -0.817522 | 3.156463e-52 | -8.615850e-47 |
| Msa1049510 | Msa1237030 | -0.823924 | 1.065960e-53 | -8.615850e-47 |
| Msa1049510 | Msa1246530 | 0.846727 | 1.811546e-59 | -8.615850e-47 |
| Msa1049510 | Msa1269580 | 0.803195 | 3.914742e-49 | -8.615850e-47 |
| Msa1049510 | Msa1299360 | -0.827058 | 1.929723e-54 | -8.615850e-47 |
| Msa1049510 | Msa1307950 | -0.810267 | 1.255125e-50 | -8.615850e-47 |
| Msa1049510 | Msa1310690 | -0.807076 | 6.029882e-50 | -8.615850e-47 |
| Msa1049510 | Msa1317100 | 0.811452 | 6.952981e-51 | -8.615850e-47 |
| Msa1049510 | Msa1321630 | -0.808987 | 2.363608e-50 | -8.615850e-47 |
| Msa1049510 | Msa1333560 | -0.808791 | 2.603736e-50 | -8.615850e-47 |
| Msa1049510 | Msa1344850 | -0.802542 | 5.340235e-49 | -8.615850e-47 |
| Msa1049510 | Msa1365150 | -0.822317 | 2.527596e-53 | -8.615850e-47 |
| Msa1049510 | Msa1367880 | -0.814049 | 1.877213e-51 | -8.615850e-47 |
| Msa1049510 | Msa1373510 | -0.822731 | 2.025113e-53 | -8.615850e-47 |
| Msa1049510 | Msa1379570 | -0.818502 | 1.895573e-52 | -8.615850e-47 |
| Msa1049510 | Msa1382310 | -0.823917 | 1.070104e-53 | -8.615850e-47 |
| Msa1049510 | Msa1382410 | -0.803605 | 3.218310e-49 | -8.615850e-47 |
| Msa1049510 | Msa1390310 | -0.816069 | 6.687284e-52 | -8.615850e-47 |
| Msa1049510 | Msa1404190 | -0.828342 | 9.480940e-55 | -8.615850e-47 |
| Msa1049510 | Msa1429360 | 0.804298 | 2.310209e-49 | -8.615850e-47 |
| Msa1049510 | Msa1438640 | -0.817615 | 3.008072e-52 | -8.615850e-47 |
| Msa1049510 | Msa1442850 | -0.801624 | 8.245442e-49 | -8.615850e-47 |
| Msa1049510 | Msa1460470 | -0.814482 | 1.506291e-51 | -8.615850e-47 |
| Msa1049510 | Msa1466990 | -0.803826 | 2.896869e-49 | -8.615850e-47 |
| Msa0241800 | Msa1049510 | -0.800837 | 1.194905e-48 | -8.615850e-47 |
| Msa0259560 | Msa1049510 | -0.824394 | 8.266582e-54 | -8.615850e-47 |
| Msa0267760 | Msa1049510 | -0.809078 | 2.260550e-50 | -8.615850e-47 |
| Msa0280900 | Msa1049510 | -0.807731 | 4.379459e-50 | -8.615850e-47 |
| Msa0302450 | Msa1049510 | -0.801104 | 1.053873e-48 | -8.615850e-47 |
| Msa0304260 | Msa1049510 | -0.800937 | 1.140316e-48 | -8.615850e-47 |
| Msa0305640 | Msa1049510 | -0.819252 | 1.280758e-52 | -8.615850e-47 |
| Msa0314480 | Msa1049510 | -0.800900 | 1.160145e-48 | -8.615850e-47 |
| Msa0328210 | Msa1049510 | -0.837596 | 4.733787e-57 | -8.615850e-47 |
| Msa0509950 | Msa1049510 | 0.809540 | 1.799228e-50 | -8.615850e-47 |
| Msa0525340 | Msa1049510 | -0.810925 | 9.043591e-51 | -8.615850e-47 |
| Msa0526710 | Msa1049510 | -0.804129 | 2.504860e-49 | -8.615850e-47 |
| Msa0541860 | Msa1049510 | -0.807453 | 5.017633e-50 | -8.615850e-47 |
| Msa0552810 | Msa1049510 | -0.817869 | 2.636425e-52 | -8.615850e-47 |
| Msa0560470 | Msa1049510 | -0.826561 | 2.535052e-54 | -8.615850e-47 |
| Msa0581070 | Msa1049510 | -0.803046 | 4.202657e-49 | -8.615850e-47 |
| Msa0590680 | Msa1049510 | -0.803048 | 4.197236e-49 | -8.615850e-47 |
| Msa0591060 | Msa1049510 | -0.815857 | 7.457075e-52 | -8.615850e-47 |
| Msa0591770 | Msa1049510 | -0.813747 | 2.189198e-51 | -8.615850e-47 |
| Msa0846030 | Msa1049510 | -0.803314 | 3.697650e-49 | -8.615850e-47 |
| Msa0863450 | Msa1049510 | -0.802832 | 4.652966e-49 | -8.615850e-47 |
| Msa0864010 | Msa1049510 | -0.820567 | 6.407421e-53 | -8.615850e-47 |
| Msa0872310 | Msa1049510 | -0.822938 | 1.811907e-53 | -8.615850e-47 |
| Msa0903330 | Msa1049510 | -0.823724 | 1.187180e-53 | -8.615850e-47 |
| Msa0957450 | Msa1049510 | 0.812889 | 3.378246e-51 | -8.615850e-47 |
| Msa0976330 | Msa1049510 | -0.803684 | 3.100233e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1049510 | MtrunA17_Chr7g0218501 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 3.91e-85 | 243 |
| Msa1049510 | MtrunA17_Chr6g0454091 | 76.471 | 119 | 26 | 1 | 1 | 119 | 1 | 117 | 1.35e-60 | 181 |
| Msa1049510 | MtrunA17_Chr7g0224251 | 51.695 | 118 | 53 | 2 | 4 | 119 | 3 | 118 | 1.37e-37 | 123 |
| Msa1049510 | MtrunA17_Chr7g0224241 | 58.242 | 91 | 36 | 1 | 6 | 96 | 5 | 93 | 8.53e-32 | 114 |
| Msa1049510 | MtrunA17_Chr8g0386041 | 45.299 | 117 | 60 | 2 | 5 | 119 | 4 | 118 | 1.46e-31 | 108 |
| Msa1049510 | MtrunA17_Chr7g0268701 | 40.678 | 118 | 65 | 4 | 1 | 116 | 1 | 115 | 6.71e-27 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1049510 | AT3G01050.2 | 53.782 | 119 | 53 | 1 | 1 | 119 | 1 | 117 | 5.63e-45 | 142 |
| Msa1049510 | AT3G01050.3 | 53.782 | 119 | 53 | 1 | 1 | 119 | 1 | 117 | 5.63e-45 | 142 |
| Msa1049510 | AT3G01050.1 | 53.782 | 119 | 53 | 1 | 1 | 119 | 1 | 117 | 5.63e-45 | 142 |
| Msa1049510 | AT3G01050.4 | 53.782 | 119 | 53 | 1 | 1 | 119 | 1 | 117 | 5.63e-45 | 142 |
| Msa1049510 | AT3G01050.5 | 53.782 | 119 | 53 | 1 | 1 | 119 | 1 | 117 | 5.63e-45 | 142 |
| Msa1049510 | AT5G15460.2 | 59.016 | 122 | 45 | 2 | 1 | 119 | 1 | 120 | 1.03e-43 | 139 |
| Msa1049510 | AT5G15460.1 | 59.016 | 122 | 45 | 2 | 1 | 119 | 1 | 120 | 1.03e-43 | 139 |
| Msa1049510 | AT5G15460.4 | 59.016 | 122 | 45 | 2 | 1 | 119 | 1 | 120 | 1.03e-43 | 139 |
| Msa1049510 | AT1G22050.1 | 49.587 | 121 | 57 | 3 | 1 | 119 | 1 | 119 | 4.29e-41 | 132 |
| Msa1049510 | AT1G77870.1 | 52.101 | 119 | 55 | 2 | 3 | 119 | 2 | 120 | 7.91e-39 | 127 |
| Msa1049510 | AT4G24990.2 | 48.718 | 117 | 56 | 2 | 5 | 119 | 4 | 118 | 1.64e-32 | 110 |
| Msa1049510 | AT4G24990.1 | 48.718 | 117 | 56 | 2 | 5 | 119 | 4 | 118 | 1.64e-32 | 110 |
| Msa1049510 | AT3G26980.1 | 45.833 | 120 | 59 | 3 | 4 | 119 | 3 | 120 | 5.96e-32 | 109 |
| Msa1049510 | AT5G15460.3 | 51.163 | 86 | 37 | 2 | 37 | 119 | 11 | 94 | 2.76e-19 | 76.6 |
Find 73 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATTGATATATATTAAAA+TGG | 0.218634 | 7_2:+12864318 | None:intergenic |
| ATTTAATTTGACAAGTTTCT+TGG | 0.227982 | 7_2:-12863552 | Msa1049510:five_prime_UTR |
| TTGTTAAAATCACGAGAATT+TGG | 0.233810 | 7_2:+12864157 | None:intergenic |
| ACTTGATCTCAAACTGTTCT+TGG | 0.235141 | 7_2:+12863508 | None:intergenic |
| TAGGTCATTTGGTTCTTTAA+TGG | 0.251440 | 7_2:-12860790 | Msa1049510:three_prime_UTR |
| TTTCAAATGACCTAAGCTTA+TGG | 0.298229 | 7_2:+12860747 | None:intergenic |
| TTCTTCTTCATCTTCAATCT+AGG | 0.307764 | 7_2:-12864190 | Msa1049510:five_prime_UTR |
| CCGTAGGTGTTTACGGTTAG+AGG | 0.310120 | 7_2:-12861281 | Msa1049510:three_prime_UTR |
| CTCAAACTGTTCTTGGTTCC+CGG | 0.316859 | 7_2:+12863515 | None:intergenic |
| CTTGTTATAATTAGGTCATT+TGG | 0.325336 | 7_2:-12860801 | Msa1049510:three_prime_UTR |
| TGTTGGAACTTGTTATAATT+AGG | 0.356807 | 7_2:-12860809 | Msa1049510:three_prime_UTR |
| AGTGGCGGCAGGAAAACTTT+TGG | 0.362153 | 7_2:+12863455 | None:intergenic |
| TTAGATGAGAAACTCTGATT+TGG | 0.366421 | 7_2:-12860650 | Msa1049510:three_prime_UTR |
| CACATAAAGGGCTTTGGCTC+TGG | 0.376161 | 7_2:+12862324 | None:intergenic |
| GCACCAAGTCGAGTACTCTT+TGG | 0.388926 | 7_2:+12861173 | None:intergenic |
| TTATGGAGATACATTGCATT+CGG | 0.406570 | 7_2:+12860764 | None:intergenic |
| TTGACGGATGGTTCTGATAT+CGG | 0.410506 | 7_2:-12863480 | Msa1049510:CDS |
| GTCTACAAACATTTCGCATC+AGG | 0.420308 | 7_2:+12860980 | None:intergenic |
| GTACCAGGGGTATCACATAA+AGG | 0.432829 | 7_2:+12862311 | None:intergenic |
| GATGAGAAACTCTGATTTGG+TGG | 0.439106 | 7_2:-12860647 | Msa1049510:three_prime_UTR |
| AACAGTTTGAGATCAAGTTT+AGG | 0.441071 | 7_2:-12863503 | Msa1049510:CDS |
| CTTGGATCTCCGAGCATGAC+CGG | 0.442129 | 7_2:-12863534 | Msa1049510:exon |
| TGAGATCAAGTTTAGGTTGA+CGG | 0.445292 | 7_2:-12863496 | Msa1049510:CDS |
| ATTAAAATGGGAGAAAAGTA+AGG | 0.457820 | 7_2:+12864331 | None:intergenic |
| TATGGAGATACATTGCATTC+GGG | 0.461057 | 7_2:+12860765 | None:intergenic |
| TAATTGATATATATTAAAAT+GGG | 0.465865 | 7_2:+12864319 | None:intergenic |
| TCTTGGTTCCCGGTCATGCT+CGG | 0.467045 | 7_2:+12863525 | None:intergenic |
| TGACCCTTGGTATGTTCAGT+GGG | 0.468880 | 7_2:-12860674 | Msa1049510:three_prime_UTR |
| ATCAGATACAGTACAACAAA+TGG | 0.474515 | 7_2:+12861036 | None:intergenic |
| AAGAAAGTATTCTTGCTCAA+TGG | 0.479119 | 7_2:-12863416 | Msa1049510:CDS |
| TTTCATAAAGTGGCTGATGA+AGG | 0.486244 | 7_2:+12861079 | None:intergenic |
| TGCGGATATTGTGAATCTAA+TGG | 0.488677 | 7_2:-12861153 | Msa1049510:three_prime_UTR |
| TACCAGGGGTATCACATAAA+GGG | 0.490754 | 7_2:+12862312 | None:intergenic |
| ATTCTTGCTCAATGGCCAAA+AGG | 0.495557 | 7_2:-12863408 | Msa1049510:intron |
| GGGTATCACATAAAGGGCTT+TGG | 0.495798 | 7_2:+12862318 | None:intergenic |
| TTGGATGTAGTAACAATATG+AGG | 0.498777 | 7_2:+12861192 | None:intergenic |
| TGCATTGTTGTAACAGTACC+AGG | 0.498824 | 7_2:+12862296 | None:intergenic |
| AAAGCATATCACATGCATAC+TGG | 0.499545 | 7_2:+12860614 | None:intergenic |
| ACTTTATCTCTATTATGAAA+CGG | 0.501471 | 7_2:-12860881 | Msa1049510:three_prime_UTR |
| CAATGTATCTCCATAAGCTT+AGG | 0.503985 | 7_2:-12860757 | Msa1049510:three_prime_UTR |
| ATGAGACCTTTGTCTGTAGT+AGG | 0.520288 | 7_2:+12862257 | None:intergenic |
| GGGAGAAAAGTAAGGAAAGA+GGG | 0.522439 | 7_2:+12864339 | None:intergenic |
| AGGCGAATAATTTGTGTATG+AGG | 0.526312 | 7_2:+12861220 | None:intergenic |
| GTGACCCTTGGTATGTTCAG+TGG | 0.528922 | 7_2:-12860675 | Msa1049510:three_prime_UTR |
| TGGGAGAAAAGTAAGGAAAG+AGG | 0.538600 | 7_2:+12864338 | None:intergenic |
| GATTTGAAGTTAATCAGTGC+AGG | 0.542038 | 7_2:-12862383 | Msa1049510:CDS |
| TTTCAATGTTGCAATACTAG+TGG | 0.550833 | 7_2:+12863437 | None:intergenic |
| TTGGATCTCCGAGCATGACC+GGG | 0.551174 | 7_2:-12863533 | Msa1049510:exon |
| ATCAAGTTTAGGTTGACGGA+TGG | 0.578278 | 7_2:-12863492 | Msa1049510:CDS |
| AGTAACAATATGAGGCATGC+AGG | 0.582071 | 7_2:+12861200 | None:intergenic |
| CAATGTTGCAATACTAGTGG+CGG | 0.583009 | 7_2:+12863440 | None:intergenic |
| CATCCAAAGAGTACTCGACT+TGG | 0.592471 | 7_2:-12861176 | Msa1049510:three_prime_UTR |
| GTTGCAATACTAGTGGCGGC+AGG | 0.593429 | 7_2:+12863444 | None:intergenic |
| TGGCTGATGAAGGCTATGGC+CGG | 0.595106 | 7_2:+12861089 | None:intergenic |
| AAAGAGTACTCGACTTGGTG+CGG | 0.611276 | 7_2:-12861171 | Msa1049510:three_prime_UTR |
| CCTCTAACCGTAAACACCTA+CGG | 0.615640 | 7_2:+12861281 | None:intergenic |
| TTGGAGAACAACAAAACAGT+CGG | 0.627089 | 7_2:-12862353 | Msa1049510:CDS |
| AGCCCTTTATGTGATACCCC+TGG | 0.627346 | 7_2:-12862314 | Msa1049510:CDS |
| TAAACCCACTGAACATACCA+AGG | 0.636143 | 7_2:+12860670 | None:intergenic |
| AGACCTTTGTCTGTAGTAGG+TGG | 0.637038 | 7_2:+12862260 | None:intergenic |
| AAAGTGGCTGATGAAGGCTA+TGG | 0.656799 | 7_2:+12861085 | None:intergenic |
| CATTGTTGTAACAGTACCAG+GGG | 0.659317 | 7_2:+12862298 | None:intergenic |
| GATGCAGCACAGCACAAATG+TGG | 0.659452 | 7_2:-12861355 | Msa1049510:CDS |
| CAACCACCTACTACAGACAA+AGG | 0.663273 | 7_2:-12862263 | Msa1049510:intron |
| GCATTGTTGTAACAGTACCA+GGG | 0.672978 | 7_2:+12862297 | None:intergenic |
| AAGATAAGGAGAATGTGCCA+AGG | 0.679109 | 7_2:-12862415 | Msa1049510:CDS |
| CGGATATGATTTATGCGCGG+AGG | 0.681816 | 7_2:-12860700 | Msa1049510:three_prime_UTR |
| GAGTTTAATTAACGAATACG+AGG | 0.684836 | 7_2:+12863643 | None:intergenic |
| TACTGTTACAACAATGCATG+TGG | 0.701570 | 7_2:-12862291 | Msa1049510:CDS |
| ATAGATGTCACTGATCTGAG+TGG | 0.707851 | 7_2:+12864130 | None:intergenic |
| AAACCCACTGAACATACCAA+GGG | 0.711768 | 7_2:+12860671 | None:intergenic |
| GCACATTCAAATATTCAACA+CGG | 0.712553 | 7_2:+12860953 | None:intergenic |
| GATCGGATATGATTTATGCG+CGG | 0.732628 | 7_2:-12860703 | Msa1049510:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCTTTTTTTTTTTGTTT+TGG | + | chr7_2:12860707-12860726 | None:intergenic | 10.0% |
| !! | TCATATATCAATAAAATAAA+AGG | + | chr7_2:12862500-12862519 | None:intergenic | 10.0% |
| !! | AAATAATAATAATTAGAACT+AGG | + | chr7_2:12862764-12862783 | None:intergenic | 10.0% |
| !! | ATAATGAATAAAAAAAACAA+GGG | + | chr7_2:12862964-12862983 | None:intergenic | 10.0% |
| !! | AATAATGAATAAAAAAAACA+AGG | + | chr7_2:12862965-12862984 | None:intergenic | 10.0% |
| !! | AAAAACAAATCAAAACTTTA+AGG | - | chr7_2:12860887-12860906 | Msa1049510:three_prime_UTR | 15.0% |
| !! | AAAAAAATCAAGCAAAAAAT+TGG | + | chr7_2:12860943-12860962 | None:intergenic | 15.0% |
| !!! | AAAATCTAAAATTTTCAACT+GGG | + | chr7_2:12860973-12860992 | None:intergenic | 15.0% |
| !!! | AAAAATCTAAAATTTTCAAC+TGG | + | chr7_2:12860974-12860993 | None:intergenic | 15.0% |
| !! | TCTTAAAAAAAATTATCAGT+AGG | + | chr7_2:12861818-12861837 | None:intergenic | 15.0% |
| !!! | TACTGATAATTTTTTTTAAG+AGG | - | chr7_2:12861817-12861836 | Msa1049510:intron | 15.0% |
| !!! | ACTGATAATTTTTTTTAAGA+GGG | - | chr7_2:12861818-12861837 | Msa1049510:intron | 15.0% |
| !! | ATTCAAAATATCACATTAAA+TGG | + | chr7_2:12862104-12862123 | None:intergenic | 15.0% |
| !!! | GATAAATTATTCTTTTTCAA+AGG | - | chr7_2:12862809-12862828 | Msa1049510:intron | 15.0% |
| !!! | ATATCTTATACAATTTTCAT+AGG | - | chr7_2:12863847-12863866 | Msa1049510:intron | 15.0% |
| !! | AAAAAAAACAGAACAAAAAG+TGG | + | chr7_2:12860918-12860937 | None:intergenic | 20.0% |
| !!! | AACAGATCTAATTTTCAAAA+GGG | + | chr7_2:12861013-12861032 | None:intergenic | 20.0% |
| !!! | AAACAGATCTAATTTTCAAA+AGG | + | chr7_2:12861014-12861033 | None:intergenic | 20.0% |
| !!! | TTGAAAATTAGATCTGTTTT+AGG | - | chr7_2:12861015-12861034 | Msa1049510:three_prime_UTR | 20.0% |
| !!! | AATCATAGATATTTTTCAAG+AGG | + | chr7_2:12861160-12861179 | None:intergenic | 20.0% |
| !!! | ATTTAATTTGACAAGTTTCT+TGG | - | chr7_2:12861420-12861439 | Msa1049510:intron | 20.0% |
| !!! | CTGATAATTTTTTTTAAGAG+GGG | - | chr7_2:12861819-12861838 | Msa1049510:intron | 20.0% |
| !! | TAATAATTAGAACTAGGATT+TGG | + | chr7_2:12862758-12862777 | None:intergenic | 20.0% |
| !! | TTAATATGTCAATCAATAAC+AGG | + | chr7_2:12862894-12862913 | None:intergenic | 20.0% |
| !! | TGATTGACATATTAATTATG+AGG | - | chr7_2:12862899-12862918 | Msa1049510:intron | 20.0% |
| !! | TTATAGAAATAAGCTGAAAA+AGG | + | chr7_2:12863174-12863193 | None:intergenic | 20.0% |
| !! | TACAAGATAGTTAATGAAAA+TGG | - | chr7_2:12863198-12863217 | Msa1049510:intron | 20.0% |
| !! | TGTTTAAAGAAGTAATATAC+TGG | + | chr7_2:12863374-12863393 | None:intergenic | 20.0% |
| !! | ACTTTATCTCTATTATGAAA+CGG | - | chr7_2:12864091-12864110 | Msa1049510:five_prime_UTR | 20.0% |
| !!! | TTTGGAAAATGATGATTTTA+GGG | - | chr7_2:12864131-12864150 | Msa1049510:five_prime_UTR | 20.0% |
| ! | ATTAAAATGGGAGAAAAGTA+AGG | + | chr7_2:12860644-12860663 | None:intergenic | 25.0% |
| ! | TTGTTAAAATCACGAGAATT+TGG | + | chr7_2:12860818-12860837 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTTTTTGTGAGT+TGG | + | chr7_2:12860870-12860889 | None:intergenic | 25.0% |
| !! | ATTTATCTGTTTTCCTATGT+TGG | - | chr7_2:12861184-12861203 | Msa1049510:three_prime_UTR | 25.0% |
| ! | TTAAGCTAAAAAACCGAAAA+GGG | + | chr7_2:12861623-12861642 | None:intergenic | 25.0% |
| ! | ATTAAGCTAAAAAACCGAAA+AGG | + | chr7_2:12861624-12861643 | None:intergenic | 25.0% |
| ! | CAAATCTGACATAGATAATT+TGG | + | chr7_2:12861649-12861668 | None:intergenic | 25.0% |
| ! | TAATAGATATAAGTACCATC+AGG | - | chr7_2:12861723-12861742 | Msa1049510:intron | 25.0% |
| ! | AATAGATATAAGTACCATCA+GGG | - | chr7_2:12861724-12861743 | Msa1049510:intron | 25.0% |
| !!! | TAATTTTTTTTAAGAGGGGT+AGG | - | chr7_2:12861823-12861842 | Msa1049510:intron | 25.0% |
| ! | CTTCATAGAAAGAAAAGTTT+AGG | - | chr7_2:12862156-12862175 | Msa1049510:intron | 25.0% |
| !! | ATCAGTTAAGAAAGTATGTA+AGG | - | chr7_2:12862184-12862203 | Msa1049510:intron | 25.0% |
| !!! | TGTTTTCCACATTTAGTTTA+AGG | + | chr7_2:12862230-12862249 | None:intergenic | 25.0% |
| ! | AGAAACAAACTACTAAATGA+CGG | + | chr7_2:12862265-12862284 | None:intergenic | 25.0% |
| !!! | TTATTTTAGCAATTCGACTA+CGG | - | chr7_2:12862357-12862376 | Msa1049510:CDS | 25.0% |
| !!! | GTTCGGTTTTTAAAACATTA+TGG | - | chr7_2:12862444-12862463 | Msa1049510:intron | 25.0% |
| !! | TTCAAATCTTTTATAGTCCT+TGG | + | chr7_2:12862577-12862596 | None:intergenic | 25.0% |
| ! | AAGGTAATGAACATATCATA+AGG | + | chr7_2:12863155-12863174 | None:intergenic | 25.0% |
| ! | CTTTAAACATGTTTATACTC+TGG | - | chr7_2:12863385-12863404 | Msa1049510:intron | 25.0% |
| ! | TTAAATTTAAGAAGCAAGCA+TGG | + | chr7_2:12863491-12863510 | None:intergenic | 25.0% |
| ! | AAATTTAATGCTGTTCTGTT+TGG | - | chr7_2:12863503-12863522 | Msa1049510:CDS | 25.0% |
| !!! | TGTGTTATTTTATAGCATCA+AGG | - | chr7_2:12863641-12863660 | Msa1049510:five_prime_UTR | 25.0% |
| !!! | GATGTCGTATTTTTTTTGTT+TGG | - | chr7_2:12864113-12864132 | Msa1049510:five_prime_UTR | 25.0% |
| !! | GTTTGGAAAATGATGATTTT+AGG | - | chr7_2:12864130-12864149 | Msa1049510:five_prime_UTR | 25.0% |
| !!! | TGTTGGAACTTGTTATAATT+AGG | - | chr7_2:12864163-12864182 | Msa1049510:five_prime_UTR | 25.0% |
| !! | CTTGTTATAATTAGGTCATT+TGG | - | chr7_2:12864171-12864190 | Msa1049510:five_prime_UTR | 25.0% |
| !! | TATGAGACTAATCTTTTGAT+CGG | - | chr7_2:12864252-12864271 | Msa1049510:five_prime_UTR | 25.0% |
| AGAAGAAAAAGAGAGAAAGT+TGG | + | chr7_2:12860760-12860779 | None:intergenic | 30.0% | |
| TTCTTCTTCATCTTCAATCT+AGG | - | chr7_2:12860782-12860801 | Msa1049510:three_prime_UTR | 30.0% | |
| !!! | GTTTTTTTGTATGCACTTGT+TGG | - | chr7_2:12861088-12861107 | Msa1049510:three_prime_UTR | 30.0% |
| GAGTTTAATTAACGAATACG+AGG | + | chr7_2:12861332-12861351 | None:intergenic | 30.0% | |
| ! | ACTATGAACAAGTTTTCTTG+TGG | + | chr7_2:12861368-12861387 | None:intergenic | 30.0% |
| ! | AACAGTTTGAGATCAAGTTT+AGG | - | chr7_2:12861469-12861488 | Msa1049510:intron | 30.0% |
| TTTCAATGTTGCAATACTAG+TGG | + | chr7_2:12861538-12861557 | None:intergenic | 30.0% | |
| !! | AAGAAAGTATTCTTGCTCAA+TGG | - | chr7_2:12861556-12861575 | Msa1049510:intron | 30.0% |
| ! | ACACAAAACAACTAACCTTT+TGG | + | chr7_2:12861582-12861601 | None:intergenic | 30.0% |
| ! | TTCTTTGTTCTTTCCCTTTT+CGG | - | chr7_2:12861607-12861626 | Msa1049510:intron | 30.0% |
| ACAATGTTTCTTACAACAAC+GGG | + | chr7_2:12861693-12861712 | None:intergenic | 30.0% | |
| CACAATGTTTCTTACAACAA+CGG | + | chr7_2:12861694-12861713 | None:intergenic | 30.0% | |
| TGTAAGAAACATTGTGTTCA+TGG | - | chr7_2:12861698-12861717 | Msa1049510:intron | 30.0% | |
| TTTAAGCAATCACTACATCT+AGG | + | chr7_2:12862004-12862023 | None:intergenic | 30.0% | |
| ! | TTAGTTTAAGGCTCTATTTG+AGG | + | chr7_2:12862218-12862237 | None:intergenic | 30.0% |
| ATAGAGCCTTAAACTAAATG+TGG | - | chr7_2:12862221-12862240 | Msa1049510:intron | 30.0% | |
| AACTAAATGTGGAAAACACT+AGG | - | chr7_2:12862232-12862251 | Msa1049510:intron | 30.0% | |
| CTAAAATAACTGAACAGTGA+AGG | + | chr7_2:12862346-12862365 | None:intergenic | 30.0% | |
| !!! | TGTGTTGTGTTTTGAAGATA+AGG | - | chr7_2:12862543-12862562 | Msa1049510:intron | 30.0% |
| AATCAGTGCAGGAAAAATAT+TGG | - | chr7_2:12862600-12862619 | Msa1049510:intron | 30.0% | |
| ! | TCTAATGACATAAGCTTTTG+AGG | - | chr7_2:12863102-12863121 | Msa1049510:intron | 30.0% |
| ! | CTAATGACATAAGCTTTTGA+GGG | - | chr7_2:12863103-12863122 | Msa1049510:intron | 30.0% |
| ! | ATTTTACTACAAGTCCTGTT+TGG | + | chr7_2:12863309-12863328 | None:intergenic | 30.0% |
| TTGGATGTAGTAACAATATG+AGG | + | chr7_2:12863783-12863802 | None:intergenic | 30.0% | |
| ! | GAGAGTTCATTTTCATAAAG+TGG | + | chr7_2:12863906-12863925 | None:intergenic | 30.0% |
| ATCAGATACAGTACAACAAA+TGG | + | chr7_2:12863939-12863958 | None:intergenic | 30.0% | |
| GCACATTCAAATATTCAACA+CGG | + | chr7_2:12864022-12864041 | None:intergenic | 30.0% | |
| !! | TAGGTCATTTGGTTCTTTAA+TGG | - | chr7_2:12864182-12864201 | Msa1049510:five_prime_UTR | 30.0% |
| TTATGGAGATACATTGCATT+CGG | + | chr7_2:12864211-12864230 | None:intergenic | 30.0% | |
| TTTCAAATGACCTAAGCTTA+TGG | + | chr7_2:12864228-12864247 | None:intergenic | 30.0% | |
| TTAGATGAGAAACTCTGATT+TGG | - | chr7_2:12864322-12864341 | Msa1049510:five_prime_UTR | 30.0% | |
| ACTTGATCTCAAACTGTTCT+TGG | + | chr7_2:12861467-12861486 | None:intergenic | 35.0% | |
| !! | TGAGATCAAGTTTAGGTTGA+CGG | - | chr7_2:12861476-12861495 | Msa1049510:intron | 35.0% |
| !!! | TTTTTTTTAAGAGGGGTAGG+TGG | - | chr7_2:12861826-12861845 | Msa1049510:intron | 35.0% |
| ! | GATTGGATGGATTTGAAAAC+CGG | - | chr7_2:12861852-12861871 | Msa1049510:intron | 35.0% |
| ! | ATTGGATGGATTTGAAAACC+GGG | - | chr7_2:12861853-12861872 | Msa1049510:intron | 35.0% |
| TGATGAGATCAGAGAAGAAA+AGG | - | chr7_2:12862063-12862082 | Msa1049510:intron | 35.0% | |
| TCTTTCTATGAAGCATATGC+AGG | + | chr7_2:12862149-12862168 | None:intergenic | 35.0% | |
| ! | GATTTGAAGTTAATCAGTGC+AGG | - | chr7_2:12862589-12862608 | Msa1049510:intron | 35.0% |
| TTGGAGAACAACAAAACAGT+CGG | - | chr7_2:12862619-12862638 | Msa1049510:intron | 35.0% | |
| TACTGTTACAACAATGCATG+TGG | - | chr7_2:12862681-12862700 | Msa1049510:intron | 35.0% | |
| ! | ATCCTTTAACTTAGCTGTCA+AGG | - | chr7_2:12862929-12862948 | Msa1049510:intron | 35.0% |
| TTCCTTGACAGCTAAGTTAA+AGG | + | chr7_2:12862934-12862953 | None:intergenic | 35.0% | |
| TCAAACGTGTCAATCAAGAA+AGG | + | chr7_2:12863077-12863096 | None:intergenic | 35.0% | |
| ! | CTTAAGTTGCTTATCCAAAC+AGG | - | chr7_2:12863292-12863311 | Msa1049510:intron | 35.0% |
| ATATACTGGATATGTCAAGC+TGG | + | chr7_2:12863360-12863379 | None:intergenic | 35.0% | |
| ! | GCTGCTTTCTTATCTGTATA+AGG | + | chr7_2:12863593-12863612 | None:intergenic | 35.0% |
| ! | TCATTTTCCGTAGGTGTTTA+CGG | - | chr7_2:12863684-12863703 | Msa1049510:intron | 35.0% |
| ! | CTTCGTTTTCACGTAATCTA+TGG | - | chr7_2:12863716-12863735 | Msa1049510:intron | 35.0% |
| ! | AGGCGAATAATTTGTGTATG+AGG | + | chr7_2:12863755-12863774 | None:intergenic | 35.0% |
| TGCGGATATTGTGAATCTAA+TGG | - | chr7_2:12863819-12863838 | Msa1049510:intron | 35.0% | |
| !!! | CATAGGAGTTGTTTTTCTTC+CGG | - | chr7_2:12863864-12863883 | Msa1049510:intron | 35.0% |
| TTTCATAAAGTGGCTGATGA+AGG | + | chr7_2:12863896-12863915 | None:intergenic | 35.0% | |
| TATGGAGATACATTGCATTC+GGG | + | chr7_2:12864210-12864229 | None:intergenic | 35.0% | |
| CAATGTATCTCCATAAGCTT+AGG | - | chr7_2:12864215-12864234 | Msa1049510:five_prime_UTR | 35.0% | |
| GGGAGAAAAGTAAGGAAAGA+GGG | + | chr7_2:12860636-12860655 | None:intergenic | 40.0% | |
| TGGGAGAAAAGTAAGGAAAG+AGG | + | chr7_2:12860637-12860656 | None:intergenic | 40.0% | |
| ATAGATGTCACTGATCTGAG+TGG | + | chr7_2:12860845-12860864 | None:intergenic | 40.0% | |
| CATCATGCAGAATCCAACAT+AGG | + | chr7_2:12861200-12861219 | None:intergenic | 40.0% | |
| !! | ATCAAGTTTAGGTTGACGGA+TGG | - | chr7_2:12861480-12861499 | Msa1049510:intron | 40.0% |
| !! | TTGACGGATGGTTCTGATAT+CGG | - | chr7_2:12861492-12861511 | Msa1049510:intron | 40.0% |
| CAATGTTGCAATACTAGTGG+CGG | + | chr7_2:12861535-12861554 | None:intergenic | 40.0% | |
| ATTCTTGCTCAATGGCCAAA+AGG | - | chr7_2:12861564-12861583 | Msa1049510:intron | 40.0% | |
| !! | AATCGAACTTGTTGTTGCAG+GGG | + | chr7_2:12861795-12861814 | None:intergenic | 40.0% |
| !! | GAATCGAACTTGTTGTTGCA+GGG | + | chr7_2:12861796-12861815 | None:intergenic | 40.0% |
| TTTGAAAACCGGGTGATATC+AGG | - | chr7_2:12861863-12861882 | Msa1049510:intron | 40.0% | |
| !! | CATGATCATCTGAGGCTTTT+GGG | - | chr7_2:12861888-12861907 | Msa1049510:intron | 40.0% |
| AGCAATCACTACATCTAGGT+TGG | + | chr7_2:12862000-12862019 | None:intergenic | 40.0% | |
| !! | TACGGTTTTGTCCCGATATA+AGG | - | chr7_2:12862375-12862394 | Msa1049510:CDS | 40.0% |
| !! | ACGGTTTTGTCCCGATATAA+GGG | - | chr7_2:12862376-12862395 | Msa1049510:CDS | 40.0% |
| TGCCTTAAACCCCTTATATC+GGG | + | chr7_2:12862389-12862408 | None:intergenic | 40.0% | |
| CTGCCTTAAACCCCTTATAT+CGG | + | chr7_2:12862390-12862409 | None:intergenic | 40.0% | |
| TCAGCAAGACTTCTGGATTA+TGG | + | chr7_2:12862418-12862437 | None:intergenic | 40.0% | |
| !! | AGTCTTGCTGATTCGTTGTT+CGG | - | chr7_2:12862427-12862446 | Msa1049510:intron | 40.0% |
| AAGATAAGGAGAATGTGCCA+AGG | - | chr7_2:12862557-12862576 | Msa1049510:intron | 40.0% | |
| !! | TACCAGGGGTATCACATAAA+GGG | + | chr7_2:12862663-12862682 | None:intergenic | 40.0% |
| CATTGTTGTAACAGTACCAG+GGG | + | chr7_2:12862677-12862696 | None:intergenic | 40.0% | |
| GCATTGTTGTAACAGTACCA+GGG | + | chr7_2:12862678-12862697 | None:intergenic | 40.0% | |
| TGCATTGTTGTAACAGTACC+AGG | + | chr7_2:12862679-12862698 | None:intergenic | 40.0% | |
| ATGAGACCTTTGTCTGTAGT+AGG | + | chr7_2:12862718-12862737 | None:intergenic | 40.0% | |
| GAACTAGGATTTGGCATTGT+TGG | + | chr7_2:12862749-12862768 | None:intergenic | 40.0% | |
| TCATCCGACACATATTGACA+TGG | - | chr7_2:12863556-12863575 | Msa1049510:five_prime_UTR | 40.0% | |
| TCCACCATGTCAATATGTGT+CGG | + | chr7_2:12863563-12863582 | None:intergenic | 40.0% | |
| ! | ATGTCGTCATCATTTTCCGT+AGG | - | chr7_2:12863675-12863694 | Msa1049510:five_prime_UTR | 40.0% |
| AGTAACAATATGAGGCATGC+AGG | + | chr7_2:12863775-12863794 | None:intergenic | 40.0% | |
| GTCTACAAACATTTCGCATC+AGG | + | chr7_2:12863995-12864014 | None:intergenic | 40.0% | |
| !!! | TTTTAGGGTTGTGTGTGTGT+TGG | - | chr7_2:12864146-12864165 | Msa1049510:five_prime_UTR | 40.0% |
| GATCGGATATGATTTATGCG+CGG | - | chr7_2:12864269-12864288 | Msa1049510:five_prime_UTR | 40.0% | |
| AAACCCACTGAACATACCAA+GGG | + | chr7_2:12864304-12864323 | None:intergenic | 40.0% | |
| TAAACCCACTGAACATACCA+AGG | + | chr7_2:12864305-12864324 | None:intergenic | 40.0% | |
| !! | GATGAGAAACTCTGATTTGG+TGG | - | chr7_2:12864325-12864344 | Msa1049510:five_prime_UTR | 40.0% |
| CTCAAACTGTTCTTGGTTCC+CGG | + | chr7_2:12861460-12861479 | None:intergenic | 45.0% | |
| !! | GGAATCGAACTTGTTGTTGC+AGG | + | chr7_2:12861797-12861816 | None:intergenic | 45.0% |
| ATCATGCACCTGATATCACC+CGG | + | chr7_2:12861874-12861893 | None:intergenic | 45.0% | |
| ATCAGGTGCATGATCATCTG+AGG | - | chr7_2:12861880-12861899 | Msa1049510:intron | 45.0% | |
| !! | GCATGATCATCTGAGGCTTT+TGG | - | chr7_2:12861887-12861906 | Msa1049510:intron | 45.0% |
| !!! | GGCTTTTGGGTTTGATGTAC+TGG | - | chr7_2:12861901-12861920 | Msa1049510:intron | 45.0% |
| TTCCTTACTGTCCTGCTTGA+CGG | - | chr7_2:12862295-12862314 | Msa1049510:CDS | 45.0% | |
| ! | AGGCTGATTCAAGGTTCAAC+CGG | + | chr7_2:12862326-12862345 | None:intergenic | 45.0% |
| ! | GAACAGTGAAGGCTGATTCA+AGG | + | chr7_2:12862335-12862354 | None:intergenic | 45.0% |
| !! | CGGTTTTGTCCCGATATAAG+GGG | - | chr7_2:12862377-12862396 | Msa1049510:CDS | 45.0% |
| GTCCCGATATAAGGGGTTTA+AGG | - | chr7_2:12862384-12862403 | Msa1049510:CDS | 45.0% | |
| CAACGAATCAGCAAGACTTC+TGG | + | chr7_2:12862425-12862444 | None:intergenic | 45.0% | |
| GGGTATCACATAAAGGGCTT+TGG | + | chr7_2:12862657-12862676 | None:intergenic | 45.0% | |
| !! | GTACCAGGGGTATCACATAA+AGG | + | chr7_2:12862664-12862683 | None:intergenic | 45.0% |
| CAACCACCTACTACAGACAA+AGG | - | chr7_2:12862709-12862728 | Msa1049510:intron | 45.0% | |
| AGACCTTTGTCTGTAGTAGG+TGG | + | chr7_2:12862715-12862734 | None:intergenic | 45.0% | |
| TTACAGTCCTAGCTTCACAG+AGG | + | chr7_2:12863024-12863043 | None:intergenic | 45.0% | |
| TCCGACACATATTGACATGG+TGG | - | chr7_2:12863559-12863578 | Msa1049510:five_prime_UTR | 45.0% | |
| CCTCTAACCGTAAACACCTA+CGG | + | chr7_2:12863694-12863713 | None:intergenic | 45.0% | |
| !! | CATCCAAAGAGTACTCGACT+TGG | - | chr7_2:12863796-12863815 | Msa1049510:intron | 45.0% |
| !! | AAAGAGTACTCGACTTGGTG+CGG | - | chr7_2:12863801-12863820 | Msa1049510:intron | 45.0% |
| AAAGTGGCTGATGAAGGCTA+TGG | + | chr7_2:12863890-12863909 | None:intergenic | 45.0% | |
| TGACCCTTGGTATGTTCAGT+GGG | - | chr7_2:12864298-12864317 | Msa1049510:five_prime_UTR | 45.0% | |
| !! | TAATTGATATATATTAAAAT+GGG | + | chr7_2:12860656-12860675 | None:intergenic | 5.0% |
| !! | ATAATTGATATATATTAAAA+TGG | + | chr7_2:12860657-12860676 | None:intergenic | 5.0% |
| ! | TGGCGGCAGGAAAACTTTTG+GGG | + | chr7_2:12861518-12861537 | None:intergenic | 50.0% |
| ! | GTGGCGGCAGGAAAACTTTT+GGG | + | chr7_2:12861519-12861538 | None:intergenic | 50.0% |
| ! | AGTGGCGGCAGGAAAACTTT+TGG | + | chr7_2:12861520-12861539 | None:intergenic | 50.0% |
| AGAGGGGTAGGTGGTTTGAT+TGG | - | chr7_2:12861835-12861854 | Msa1049510:intron | 50.0% | |
| GGGTAGGTGGTTTGATTGGA+TGG | - | chr7_2:12861839-12861858 | Msa1049510:intron | 50.0% | |
| AACCGTCAAGCAGGACAGTA+AGG | + | chr7_2:12862300-12862319 | None:intergenic | 50.0% | |
| ! | CACATAAAGGGCTTTGGCTC+TGG | + | chr7_2:12862651-12862670 | None:intergenic | 50.0% |
| AGCCCTTTATGTGATACCCC+TGG | - | chr7_2:12862658-12862677 | Msa1049510:intron | 50.0% | |
| GTAGTCTCCTCTGTGAAGCT+AGG | - | chr7_2:12863014-12863033 | Msa1049510:intron | 50.0% | |
| GATGCAGCACAGCACAAATG+TGG | - | chr7_2:12863617-12863636 | Msa1049510:five_prime_UTR | 50.0% | |
| CCGTAGGTGTTTACGGTTAG+AGG | - | chr7_2:12863691-12863710 | Msa1049510:intron | 50.0% | |
| GCACCAAGTCGAGTACTCTT+TGG | + | chr7_2:12863802-12863821 | None:intergenic | 50.0% | |
| CGGATATGATTTATGCGCGG+AGG | - | chr7_2:12864272-12864291 | Msa1049510:five_prime_UTR | 50.0% | |
| GTGACCCTTGGTATGTTCAG+TGG | - | chr7_2:12864297-12864316 | Msa1049510:five_prime_UTR | 50.0% | |
| CTTGGATCTCCGAGCATGAC+CGG | - | chr7_2:12861438-12861457 | Msa1049510:intron | 55.0% | |
| TTGGATCTCCGAGCATGACC+GGG | - | chr7_2:12861439-12861458 | Msa1049510:intron | 55.0% | |
| TCTTGGTTCCCGGTCATGCT+CGG | + | chr7_2:12861450-12861469 | None:intergenic | 55.0% | |
| GTTGCAATACTAGTGGCGGC+AGG | + | chr7_2:12861531-12861550 | None:intergenic | 55.0% | |
| GTCCTGCTTGACGGTTCAAC+CGG | - | chr7_2:12862304-12862323 | Msa1049510:CDS | 55.0% | |
| AACCGGTTGAACCGTCAAGC+AGG | + | chr7_2:12862309-12862328 | None:intergenic | 55.0% | |
| TGGCTGATGAAGGCTATGGC+CGG | + | chr7_2:12863886-12863905 | None:intergenic | 55.0% | |
| CCACTTGCGCTAGACCCTGA+TGG | + | chr7_2:12861741-12861760 | None:intergenic | 60.0% | |
| CCATCAGGGTCTAGCGCAAG+TGG | - | chr7_2:12861738-12861757 | Msa1049510:intron | 60.0% | |
| CAGGGTCTAGCGCAAGTGGT+TGG | - | chr7_2:12861742-12861761 | Msa1049510:intron | 60.0% | |
| ! | AGCGCAAGTGGTTGGTGTGC+AGG | - | chr7_2:12861750-12861769 | Msa1049510:intron | 60.0% |
| ! | GCGCAAGTGGTTGGTGTGCA+GGG | - | chr7_2:12861751-12861770 | Msa1049510:intron | 60.0% |
| ! | CGCAAGTGGTTGGTGTGCAG+GGG | - | chr7_2:12861752-12861771 | Msa1049510:intron | 60.0% |
| TGCGCGGAGGCAGTGACCCT+TGG | - | chr7_2:12864285-12864304 | Msa1049510:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 12860629 | 12864365 | 12860629 | ID=Msa1049510;Name=Msa1049510 |
| chr7_2 | mRNA | 12860629 | 12864365 | 12860629 | ID=Msa1049510-mRNA-1;Parent=Msa1049510;Name=Msa1049510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=433|1|1|1|0.33|0|4|710|119 |
| chr7_2 | exon | 12860629 | 12861394 | 12860629 | ID=Msa1049510-mRNA-1:exon:3228;Parent=Msa1049510-mRNA-1 |
| chr7_2 | exon | 12862264 | 12862434 | 12862264 | ID=Msa1049510-mRNA-1:exon:3227;Parent=Msa1049510-mRNA-1 |
| chr7_2 | exon | 12863409 | 12863694 | 12863409 | ID=Msa1049510-mRNA-1:exon:3226;Parent=Msa1049510-mRNA-1 |
| chr7_2 | exon | 12864086 | 12864365 | 12864086 | ID=Msa1049510-mRNA-1:exon:3225;Parent=Msa1049510-mRNA-1 |
| chr7_2 | five_prime_UTR | 12864086 | 12864365 | 12864086 | ID=Msa1049510-mRNA-1:five_prime_utr;Parent=Msa1049510-mRNA-1 |
| chr7_2 | five_prime_UTR | 12863542 | 12863694 | 12863542 | ID=Msa1049510-mRNA-1:five_prime_utr;Parent=Msa1049510-mRNA-1 |
| chr7_2 | CDS | 12863409 | 12863541 | 12863409 | ID=Msa1049510-mRNA-1:cds;Parent=Msa1049510-mRNA-1 |
| chr7_2 | CDS | 12862264 | 12862434 | 12862264 | ID=Msa1049510-mRNA-1:cds;Parent=Msa1049510-mRNA-1 |
| chr7_2 | CDS | 12861339 | 12861394 | 12861339 | ID=Msa1049510-mRNA-1:cds;Parent=Msa1049510-mRNA-1 |
| chr7_2 | three_prime_UTR | 12860629 | 12861338 | 12860629 | ID=Msa1049510-mRNA-1:three_prime_utr;Parent=Msa1049510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
