AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0264240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264240 MtrunA17_Chr7g0230671 82.609 184 8 2 1 164 1 180 1.32e-94 290
Msa0264240 MtrunA17_Chr4g0012061 46.597 191 69 5 2 164 7 192 2.48e-38 140
Msa0264240 MtrunA17_Chr7g0270371 94.737 38 2 0 166 203 240 277 3.18e-18 82.0
Msa0264240 MtrunA17_Chr1g0194201 92.105 38 3 0 166 203 240 277 6.18e-18 81.3
Msa0264240 MtrunA17_Chr7g0246591 89.474 38 4 0 166 203 306 343 2.06e-17 79.7
Msa0264240 MtrunA17_Chr2g0320011 92.105 38 3 0 166 203 253 290 5.39e-17 78.6
Msa0264240 MtrunA17_Chr2g0284091 89.474 38 4 0 166 203 205 242 1.21e-16 77.4
Msa0264240 MtrunA17_Chr1g0193081 86.842 38 5 0 166 203 240 277 1.88e-16 77.0
Msa0264240 MtrunA17_Chr2g0277011 86.842 38 5 0 166 203 255 292 2.99e-16 76.3
Msa0264240 MtrunA17_Chr8g0350311 81.579 38 7 0 166 203 304 341 2.01e-15 73.9
Msa0264240 MtrunA17_Chr7g0273601 48.077 52 25 1 154 203 258 309 2.67e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264240 AT1G79600.1 55.856 111 29 1 74 164 77 187 2.76e-32 123
Msa0264240 AT5G14640.1 92.105 38 3 0 166 203 239 276 3.15e-17 79.3
Msa0264240 AT5G14640.2 92.105 38 3 0 166 203 239 276 3.15e-17 79.3
Msa0264240 AT4G18710.2 89.474 38 4 0 166 203 199 236 4.70e-17 77.8
Msa0264240 AT3G05840.2 89.474 38 4 0 166 203 238 275 5.36e-17 79.0
Msa0264240 AT3G05840.1 89.474 38 4 0 166 203 238 275 5.36e-17 79.0
Msa0264240 AT5G26751.1 89.474 38 4 0 166 203 234 271 7.13e-17 78.6
Msa0264240 AT4G18710.1 89.474 38 4 0 166 203 205 242 1.89e-16 77.0
Msa0264240 AT2G30980.1 89.474 38 4 0 166 203 237 274 2.73e-16 76.6
Msa0264240 AT1G06390.2 89.474 38 4 0 166 203 235 272 2.88e-16 76.6
Msa0264240 AT1G06390.1 89.474 38 4 0 166 203 235 272 2.88e-16 76.6
Msa0264240 AT1G57870.1 86.842 38 5 0 166 203 247 284 3.11e-16 76.6
Msa0264240 AT1G57870.4 86.842 38 5 0 166 203 247 284 3.11e-16 76.6
Msa0264240 AT1G57870.2 86.842 38 5 0 166 203 247 284 3.11e-16 76.6
Msa0264240 AT1G57870.3 86.842 38 5 0 166 203 247 284 3.23e-16 76.6
Msa0264240 AT1G09840.11 84.211 38 6 0 166 203 121 158 5.88e-16 75.1
Msa0264240 AT1G09840.3 84.211 38 6 0 166 203 248 285 6.82e-16 75.9
Msa0264240 AT1G09840.7 84.211 38 6 0 166 203 248 285 6.82e-16 75.9
Msa0264240 AT1G09840.10 84.211 38 6 0 166 203 248 285 6.82e-16 75.9
Msa0264240 AT1G09840.6 84.211 38 6 0 166 203 248 285 6.82e-16 75.9
Msa0264240 AT1G09840.4 84.211 38 6 0 166 203 248 285 6.82e-16 75.9
Msa0264240 AT1G09840.1 84.211 38 6 0 166 203 248 285 6.82e-16 75.9
Msa0264240 AT1G09840.9 84.211 38 6 0 166 203 248 285 6.82e-16 75.9
Msa0264240 AT1G09840.5 84.211 38 6 0 166 203 248 285 6.82e-16 75.9
Msa0264240 AT1G09840.8 84.211 38 6 0 166 203 248 285 6.82e-16 75.9
Msa0264240 AT1G09840.2 84.211 38 6 0 166 203 248 285 6.82e-16 75.9
Msa0264240 AT4G00720.1 81.579 38 7 0 166 203 303 340 1.11e-15 75.1
Msa0264240 AT3G61160.5 76.316 38 9 0 166 203 267 304 3.89e-15 73.6
Msa0264240 AT3G61160.3 76.316 38 9 0 166 203 267 304 3.98e-15 73.2
Msa0264240 AT3G61160.6 76.316 38 9 0 166 203 274 311 4.33e-15 73.2
Msa0264240 AT3G61160.1 76.316 38 9 0 166 203 267 304 6.25e-15 72.8
Msa0264240 AT3G61160.2 76.316 38 9 0 166 203 274 311 6.39e-15 72.8
Msa0264240 AT3G61160.4 76.316 38 9 0 166 203 267 304 7.07e-15 72.8
Msa0264240 AT2G46070.2 63.158 38 14 0 166 203 206 243 6.93e-12 63.9
Msa0264240 AT2G46070.3 63.158 38 14 0 166 203 240 277 8.36e-12 63.9
Msa0264240 AT2G46070.1 63.158 38 14 0 166 203 206 243 9.11e-12 63.5

Find 62 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGACCATATTCACAAATT+TGG 0.128326 2_2:+64156706 Msa0264240:CDS
CATTTGCCCACCTGAATATT+TGG 0.168236 2_2:+64156775 Msa0264240:CDS
TAATTATACCTAGTATAATT+AGG 0.273993 2_2:-64157776 None:intergenic
TGGTCCCAAATTTGTGAATA+TGG 0.278942 2_2:-64156711 None:intergenic
GAGAGTTCTTCCAAATATTC+AGG 0.282444 2_2:-64156785 None:intergenic
CACTTGATTTCTTCCCTGGT+TGG 0.307218 2_2:-64157746 None:intergenic
AAGACCATATTCACAAATTT+GGG 0.307258 2_2:+64156707 Msa0264240:CDS
GGAAGAACTCTCTGAGCTTC+AGG 0.314029 2_2:+64156796 Msa0264240:CDS
GTGAGTGCTTTGGGTTCATT+TGG 0.326353 2_2:+64156614 Msa0264240:CDS
GTTGAAATTGTGAGTGCTTT+GGG 0.327077 2_2:+64156605 Msa0264240:CDS
ACTTGATTTCTTCCCTGGTT+GGG 0.328331 2_2:-64157745 None:intergenic
TAAACTTGGGAAATCTTTGT+AGG 0.332114 2_2:+64157805 Msa0264240:three_prime_UTR
AAGTCGTATCGAAGAATATA+TGG 0.350780 2_2:+64157904 Msa0264240:three_prime_UTR
ATCGTACCTTTGGTTAGAAA+TGG 0.357079 2_2:+64155444 Msa0264240:CDS
GACACTTGATAAGAATAAAA+AGG 0.358611 2_2:+64156667 Msa0264240:CDS
CATGCACTTGATTTCTTCCC+TGG 0.361221 2_2:-64157750 None:intergenic
TGGTCAGCTGGTTGCGTACT+TGG 0.374738 2_2:+64157401 Msa0264240:CDS
TGTTGAAATTGTGAGTGCTT+TGG 0.381233 2_2:+64156604 Msa0264240:CDS
TTTGTTGTATCCTAACGAAT+AGG 0.383838 2_2:+64158031 Msa0264240:three_prime_UTR
TATAATTATATATATAAACT+TGG 0.404308 2_2:+64157791 Msa0264240:three_prime_UTR
CTTGATTTCTTCCCTGGTTG+GGG 0.414502 2_2:-64157744 None:intergenic
ATTCAATCATAGCTCAGTTA+TGG 0.423401 2_2:-64157960 None:intergenic
GCCACTGTTTCCTGTGATAG+TGG 0.427336 2_2:+64157529 Msa0264240:intron
TACAAGTAACATCGTACCTT+TGG 0.441869 2_2:+64155434 Msa0264240:CDS
TACTCAGTTGCACCGAATAT+AGG 0.447929 2_2:-64157359 None:intergenic
CCTTGATAATTTCCACAAGT+TGG 0.452229 2_2:-64157558 None:intergenic
TCGTTGGATAGGAATTGAAC+TGG 0.469500 2_2:-64155340 None:intergenic
TATTCAGGTGGGCAAATGTC+AGG 0.469978 2_2:-64156770 None:intergenic
CTGAAACGACGTCGTTGGAT+AGG 0.472321 2_2:-64155351 None:intergenic
TGACCTAACTTCACAAAAGT+TGG 0.472861 2_2:-64156731 None:intergenic
AAATCTTTGTAGGTTAATCA+AGG 0.473313 2_2:+64157815 Msa0264240:three_prime_UTR
AGAGCTCCTGAGCCTATATT+CGG 0.474591 2_2:+64157347 Msa0264240:CDS
TGAGTGCTTTGGGTTCATTT+GGG 0.477483 2_2:+64156615 Msa0264240:CDS
GTCATTGACATCTGGTCAGC+TGG 0.482850 2_2:+64157389 Msa0264240:CDS
CACAACCATGTTATTCATCA+TGG 0.483949 2_2:+64155301 Msa0264240:CDS
CAAAATTCTTGCTGCTGTGG+TGG 0.496154 2_2:+64155398 Msa0264240:CDS
ATATCATCAGCACGGTTCAA+TGG 0.498271 2_2:-64155489 None:intergenic
TGACTACACTCCTATTCGTT+AGG 0.509378 2_2:-64158041 None:intergenic
CCAACTTGTGGAAATTATCA+AGG 0.511188 2_2:+64157558 Msa0264240:three_prime_UTR
AAAGGTACGATGTTACTTGT+AGG 0.523602 2_2:-64155432 None:intergenic
ACACCACAGTCATTGACATC+TGG 0.524089 2_2:+64157381 Msa0264240:CDS
GCATGAATCCTAATTATACT+AGG 0.531370 2_2:+64157768 Msa0264240:three_prime_UTR
TTTGTTCCATTTCTAACCAA+AGG 0.539371 2_2:-64155450 None:intergenic
TGCCTCTGAAACGACGTCGT+TGG 0.544692 2_2:-64155356 None:intergenic
ATCCAACGACGTCGTTTCAG+AGG 0.546238 2_2:+64155354 Msa0264240:CDS
ATAATTATATATATAAACTT+GGG 0.556155 2_2:+64157792 Msa0264240:three_prime_UTR
TCTCAAAATTCTTGCTGCTG+TGG 0.563774 2_2:+64155395 Msa0264240:CDS
TTGGTCTACTCCACTATCAC+AGG 0.564955 2_2:-64157539 None:intergenic
GTTGCACCGAATATAGGCTC+AGG 0.565527 2_2:-64157353 None:intergenic
TAGGTCAAGGATCGTCCACT+AGG 0.585067 2_2:+64156747 Msa0264240:CDS
TGGGCAAATGTCAGGCCTAG+TGG 0.591643 2_2:-64156762 None:intergenic
AGTTCTTCCAAATATTCAGG+TGG 0.604803 2_2:-64156782 None:intergenic
TGCTGATGATATTCAAGCTG+AGG 0.610385 2_2:+64155500 Msa0264240:CDS
CGAGTCCATGATGAATAACA+TGG 0.613087 2_2:-64155306 None:intergenic
TCCACTATCACAGGAAACAG+TGG 0.629471 2_2:-64157530 None:intergenic
GTTCTTCCAAATATTCAGGT+GGG 0.636431 2_2:-64156781 None:intergenic
CGTTGGATAGGAATTGAACT+GGG 0.640236 2_2:-64155339 None:intergenic
TGTTATTCATCATGGACTCG+TGG 0.651746 2_2:+64155309 Msa0264240:CDS
TAGTGGAGTAGACCAACTTG+TGG 0.657697 2_2:+64157546 Msa0264240:exon
CAGCTTGAATATCATCAGCA+CGG 0.663261 2_2:-64155497 None:intergenic
TCAATGGAAGTGTAAGAACA+CGG 0.678089 2_2:-64155473 None:intergenic
TGACCAGATGTCAATGACTG+TGG 0.757242 2_2:-64157384 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAATACAAACAAAAT+AGG + chr2_2:64155711-64155730 Msa0264240:intron 10.0%
!! TATATAATACAAACAAAATA+GGG + chr2_2:64155712-64155731 Msa0264240:intron 10.0%
!! TGATTATTATGTACTTTATT+TGG + chr2_2:64155948-64155967 Msa0264240:intron 15.0%
!!! TTCAAATATACATAACTTTT+CGG - chr2_2:64156217-64156236 None:intergenic 15.0%
!! AAACAAAACAAAAATATGAA+AGG - chr2_2:64157662-64157681 None:intergenic 15.0%
!!! TATTTTCAGTTTAGTTAATT+CGG + chr2_2:64157687-64157706 Msa0264240:intron 15.0%
!! TAATTATACCTAGTATAATT+AGG - chr2_2:64157779-64157798 None:intergenic 15.0%
!! ATAAAAAATTGTAGGCAATA+AGG - chr2_2:64156141-64156160 None:intergenic 20.0%
!! ACATACACATAAAAAATTGT+AGG - chr2_2:64156149-64156168 None:intergenic 20.0%
!! CAAATTTCAACAACAATATT+TGG - chr2_2:64156431-64156450 None:intergenic 20.0%
!! AAATGCAACTATATAAATGA+GGG - chr2_2:64156842-64156861 None:intergenic 20.0%
!! AAAATGCAACTATATAAATG+AGG - chr2_2:64156843-64156862 None:intergenic 20.0%
!!! AATTGTTGGCTTCTAAATAT+GGG + chr2_2:64155568-64155587 Msa0264240:intron 25.0%
! CAAGAAAGAACTTTCAAAAA+GGG - chr2_2:64155800-64155819 None:intergenic 25.0%
! TCAAGAAAGAACTTTCAAAA+AGG - chr2_2:64155801-64155820 None:intergenic 25.0%
! ATGTATATTTGAACACAGTT+TGG + chr2_2:64156224-64156243 Msa0264240:intron 25.0%
! TGTCATTAGTTACGATATTT+AGG - chr2_2:64156293-64156312 None:intergenic 25.0%
! TTTCAACAACAATATTTGGA+CGG - chr2_2:64156427-64156446 None:intergenic 25.0%
!! ATGAATTCAAGTTTGAGTTA+AGG - chr2_2:64156468-64156487 None:intergenic 25.0%
! AACCAATAAAACCAAAATCA+GGG - chr2_2:64156561-64156580 None:intergenic 25.0%
! TAACCAATAAAACCAAAATC+AGG - chr2_2:64156562-64156581 None:intergenic 25.0%
!!! GATTTTGGTTTTATTGGTTA+TGG + chr2_2:64156562-64156581 Msa0264240:intron 25.0%
!!! TGTTTTTAGAGCAAAAGAAT+GGG + chr2_2:64156645-64156664 Msa0264240:CDS 25.0%
! GACACTTGATAAGAATAAAA+AGG + chr2_2:64156667-64156686 Msa0264240:CDS 25.0%
! AAGACCATATTCACAAATTT+GGG + chr2_2:64156707-64156726 Msa0264240:CDS 25.0%
! AACTATATAAATGAGGGAAA+GGG - chr2_2:64156836-64156855 None:intergenic 25.0%
! TTGAATTCAAGCTCATAAAA+AGG - chr2_2:64157039-64157058 None:intergenic 25.0%
! AAATCTTTGTAGGTTAATCA+AGG + chr2_2:64157815-64157834 Msa0264240:three_prime_UTR 25.0%
TTTGTTCCATTTCTAACCAA+AGG - chr2_2:64155453-64155472 None:intergenic 30.0%
TATTTAGAAGCCAACAATTC+AGG - chr2_2:64155567-64155586 None:intergenic 30.0%
!! GAATTGTTGGCTTCTAAATA+TGG + chr2_2:64155567-64155586 Msa0264240:intron 30.0%
TCATAAGGCGAAAAAAGTAA+TGG - chr2_2:64155622-64155641 None:intergenic 30.0%
!!! TTGCGCACAGATTTTAAAAT+CGG + chr2_2:64155647-64155666 Msa0264240:intron 30.0%
!!! GGAAATGTTTTAACGTGTTT+TGG + chr2_2:64155668-64155687 Msa0264240:intron 30.0%
!!! AATGTTTTAACGTGTTTTGG+AGG + chr2_2:64155671-64155690 Msa0264240:intron 30.0%
GTAGTACTTGATTCACTAAT+TGG + chr2_2:64155821-64155840 Msa0264240:intron 30.0%
! GTACTTTATTTGGTACTTGT+AGG + chr2_2:64155958-64155977 Msa0264240:intron 30.0%
ATAGTACTAGTTCATACATG+TGG + chr2_2:64155991-64156010 Msa0264240:intron 30.0%
ATATTTGAACACAGTTTGGT+TGG + chr2_2:64156228-64156247 Msa0264240:intron 30.0%
AACTAATGACATTCATGATG+TGG + chr2_2:64156302-64156321 Msa0264240:intron 30.0%
TGATGTGGTTAATTACAATC+AGG + chr2_2:64156317-64156336 Msa0264240:intron 30.0%
AGACGGTTAATGAATATAAC+AGG - chr2_2:64156367-64156386 None:intergenic 30.0%
!!! GGTTTTATTGGTTATGGTTT+AGG + chr2_2:64156568-64156587 Msa0264240:intron 30.0%
!! TTATGGTTTAGGTTGTACAA+AGG + chr2_2:64156579-64156598 Msa0264240:intron 30.0%
!! TATGGTTTAGGTTGTACAAA+GGG + chr2_2:64156580-64156599 Msa0264240:intron 30.0%
!!! CTGTTTTTAGAGCAAAAGAA+TGG + chr2_2:64156644-64156663 Msa0264240:CDS 30.0%
GAAGACCATATTCACAAATT+TGG + chr2_2:64156706-64156725 Msa0264240:CDS 30.0%
CAACTATATAAATGAGGGAA+AGG - chr2_2:64156837-64156856 None:intergenic 30.0%
! TTTTGTGCGATTTGAAAATG+TGG + chr2_2:64156922-64156941 Msa0264240:intron 30.0%
ATTCAAGCTCTTGAACAATT+CGG + chr2_2:64157053-64157072 Msa0264240:intron 30.0%
GACAATGCATAAAATATGCA+AGG + chr2_2:64157210-64157229 Msa0264240:intron 30.0%
GAACAGATGTAAGATATGTT+TGG - chr2_2:64157317-64157336 None:intergenic 30.0%
ACATATCTTACATCTGTTCT+AGG + chr2_2:64157318-64157337 Msa0264240:intron 30.0%
! GTTAATTCGGAATTTTCATG+TGG + chr2_2:64157700-64157719 Msa0264240:intron 30.0%
GCATGAATCCTAATTATACT+AGG + chr2_2:64157768-64157787 Msa0264240:three_prime_UTR 30.0%
TAAACTTGGGAAATCTTTGT+AGG + chr2_2:64157805-64157824 Msa0264240:three_prime_UTR 30.0%
AAGTCGTATCGAAGAATATA+TGG + chr2_2:64157904-64157923 Msa0264240:three_prime_UTR 30.0%
ATTCAATCATAGCTCAGTTA+TGG - chr2_2:64157963-64157982 None:intergenic 30.0%
! ACAAAAATGGCACTCTAAAA+CGG - chr2_2:64158016-64158035 None:intergenic 30.0%
TCGTTAGGATACAACAAAAA+TGG - chr2_2:64158029-64158048 None:intergenic 30.0%
! TTTGTTGTATCCTAACGAAT+AGG + chr2_2:64158031-64158050 Msa0264240:three_prime_UTR 30.0%
CACAACCATGTTATTCATCA+TGG + chr2_2:64155301-64155320 Msa0264240:CDS 35.0%
!!! AATTTTGAGACGTTTGAGGT+AGG - chr2_2:64155385-64155404 None:intergenic 35.0%
!!! CAAGAATTTTGAGACGTTTG+AGG - chr2_2:64155389-64155408 None:intergenic 35.0%
! AAAGGTACGATGTTACTTGT+AGG - chr2_2:64155435-64155454 None:intergenic 35.0%
TACAAGTAACATCGTACCTT+TGG + chr2_2:64155434-64155453 Msa0264240:CDS 35.0%
ATCGTACCTTTGGTTAGAAA+TGG + chr2_2:64155444-64155463 Msa0264240:CDS 35.0%
! TCAATGGAAGTGTAAGAACA+CGG - chr2_2:64155476-64155495 None:intergenic 35.0%
GCTATTAATGCTACTCTGTA+TGG + chr2_2:64155540-64155559 Msa0264240:intron 35.0%
AGTAAAAACCTTGATGCGTT+GGG - chr2_2:64155595-64155614 None:intergenic 35.0%
AAGTAAAAACCTTGATGCGT+TGG - chr2_2:64155596-64155615 None:intergenic 35.0%
ATCAATAGGGTAGGAAAAGA+AGG + chr2_2:64155745-64155764 Msa0264240:intron 35.0%
AATTGGTAGAGCTGTCAAAA+CGG + chr2_2:64155838-64155857 Msa0264240:intron 35.0%
TCATGATTGACTGCGTTTAA+TGG - chr2_2:64156111-64156130 None:intergenic 35.0%
AAACGCAGTCAATCATGATT+AGG + chr2_2:64156113-64156132 Msa0264240:intron 35.0%
! AACACAGTTTGGTTGGTTAA+CGG + chr2_2:64156235-64156254 Msa0264240:intron 35.0%
! TTGGTTGGTTAACGGATAAT+CGG + chr2_2:64156243-64156262 Msa0264240:intron 35.0%
GTTAATTACAATCAGGTCGA+TGG + chr2_2:64156324-64156343 Msa0264240:intron 35.0%
GGTTGATTACGTTCAATAGA+CGG - chr2_2:64156384-64156403 None:intergenic 35.0%
GTCAGTGCAATTTAAATACG+TGG - chr2_2:64156405-64156424 None:intergenic 35.0%
TGTATGCATGCAATGTAGAT+TGG + chr2_2:64156515-64156534 Msa0264240:intron 35.0%
GTATGCATGCAATGTAGATT+GGG + chr2_2:64156516-64156535 Msa0264240:intron 35.0%
! CAATGTAGATTGGGTTTTTG+AGG + chr2_2:64156525-64156544 Msa0264240:intron 35.0%
!!! GACCCTGATTTTGGTTTTAT+TGG + chr2_2:64156556-64156575 Msa0264240:intron 35.0%
TGTTGAAATTGTGAGTGCTT+TGG + chr2_2:64156604-64156623 Msa0264240:CDS 35.0%
GTTGAAATTGTGAGTGCTTT+GGG + chr2_2:64156605-64156624 Msa0264240:CDS 35.0%
! GATAAGAATAAAAAGGCACG+TGG + chr2_2:64156674-64156693 Msa0264240:CDS 35.0%
TGGTCCCAAATTTGTGAATA+TGG - chr2_2:64156714-64156733 None:intergenic 35.0%
TGACCTAACTTCACAAAAGT+TGG - chr2_2:64156734-64156753 None:intergenic 35.0%
! ACTTTTGTGAAGTTAGGTCA+AGG + chr2_2:64156734-64156753 Msa0264240:CDS 35.0%
GTTCTTCCAAATATTCAGGT+GGG - chr2_2:64156784-64156803 None:intergenic 35.0%
AGTTCTTCCAAATATTCAGG+TGG - chr2_2:64156785-64156804 None:intergenic 35.0%
GAGAGTTCTTCCAAATATTC+AGG - chr2_2:64156788-64156807 None:intergenic 35.0%
!! ACATGTTCTATGTGTTGCTT+AGG + chr2_2:64156875-64156894 Msa0264240:intron 35.0%
GCTTAGGACAGAACAAAATT+AGG + chr2_2:64156891-64156910 Msa0264240:intron 35.0%
AAAAGGTTCATGATGAACTC+AGG - chr2_2:64157022-64157041 None:intergenic 35.0%
GCTCAATAGTTTGACTCATT+TGG + chr2_2:64157080-64157099 Msa0264240:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr2_2:64157215-64157234 Msa0264240:intron 35.0%
!!! TGACAGTGAACTTTTTTTGG+TGG - chr2_2:64157258-64157277 None:intergenic 35.0%
!!! GGTTGACAGTGAACTTTTTT+TGG - chr2_2:64157261-64157280 None:intergenic 35.0%
! CCTTGATAATTTCCACAAGT+TGG - chr2_2:64157561-64157580 None:intergenic 35.0%
CCAACTTGTGGAAATTATCA+AGG + chr2_2:64157558-64157577 Msa0264240:three_prime_UTR 35.0%
ATATGTTCAAGCTAGTAGCA+AGG - chr2_2:64157626-64157645 None:intergenic 35.0%
CGAGTCCATGATGAATAACA+TGG - chr2_2:64155309-64155328 None:intergenic 40.0%
TGTTATTCATCATGGACTCG+TGG + chr2_2:64155309-64155328 Msa0264240:CDS 40.0%
CGTTGGATAGGAATTGAACT+GGG - chr2_2:64155342-64155361 None:intergenic 40.0%
TCGTTGGATAGGAATTGAAC+TGG - chr2_2:64155343-64155362 None:intergenic 40.0%
TCTCAAAATTCTTGCTGCTG+TGG + chr2_2:64155395-64155414 Msa0264240:CDS 40.0%
ATATCATCAGCACGGTTCAA+TGG - chr2_2:64155492-64155511 None:intergenic 40.0%
CAGCTTGAATATCATCAGCA+CGG - chr2_2:64155500-64155519 None:intergenic 40.0%
TGCTGATGATATTCAAGCTG+AGG + chr2_2:64155500-64155519 Msa0264240:CDS 40.0%
TCTGTATGGTCCTGAATTGT+TGG + chr2_2:64155554-64155573 Msa0264240:intron 40.0%
ATTGGTAGAGCTGTCAAAAC+GGG + chr2_2:64155839-64155858 Msa0264240:intron 40.0%
!!! GTCTATTTTGACAGCTCTAC+TGG + chr2_2:64155870-64155889 Msa0264240:intron 40.0%
!! ATTTTGACAGCTCTACTGGT+TGG + chr2_2:64155874-64155893 Msa0264240:intron 40.0%
!!! GATTGATTCGACCCTGATTT+TGG + chr2_2:64156547-64156566 Msa0264240:intron 40.0%
! TGAGTGCTTTGGGTTCATTT+GGG + chr2_2:64156615-64156634 Msa0264240:CDS 40.0%
! GGACCAACTTTTGTGAAGTT+AGG + chr2_2:64156728-64156747 Msa0264240:CDS 40.0%
CATTTGCCCACCTGAATATT+TGG + chr2_2:64156775-64156794 Msa0264240:CDS 40.0%
TGCGATTTGAAAATGTGGCT+AGG + chr2_2:64156927-64156946 Msa0264240:intron 40.0%
GCGATTTGAAAATGTGGCTA+GGG + chr2_2:64156928-64156947 Msa0264240:intron 40.0%
GGGTTGAAAATGAGTCGAAT+TGG + chr2_2:64156948-64156967 Msa0264240:intron 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr2_2:64157216-64157235 Msa0264240:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr2_2:64157217-64157236 Msa0264240:intron 40.0%
!!! CAGTGAACTTTTTTTGGTGG+TGG - chr2_2:64157255-64157274 None:intergenic 40.0%
TTCACTGTCAACCCTACATA+GGG + chr2_2:64157268-64157287 Msa0264240:intron 40.0%
CTGTAAAACTGCCCTATGTA+GGG - chr2_2:64157282-64157301 None:intergenic 40.0%
TACTCAGTTGCACCGAATAT+AGG - chr2_2:64157362-64157381 None:intergenic 40.0%
!! GTACTTGGTGAACTTTTGCT+TGG + chr2_2:64157416-64157435 Msa0264240:CDS 40.0%
ACACAAAGAAGCTAGTTACC+TGG - chr2_2:64157442-64157461 None:intergenic 40.0%
CTAGCTTCTTTGTGTATGCT+TGG + chr2_2:64157447-64157466 Msa0264240:intron 40.0%
ACTTGATTTCTTCCCTGGTT+GGG - chr2_2:64157748-64157767 None:intergenic 40.0%
TGACTACACTCCTATTCGTT+AGG - chr2_2:64158044-64158063 None:intergenic 40.0%
CAAAATTCTTGCTGCTGTGG+TGG + chr2_2:64155398-64155417 Msa0264240:CDS 45.0%
CTGTGCGCAAGAAACTCATA+AGG - chr2_2:64155637-64155656 None:intergenic 45.0%
GCGTGAGAAATCAATAGGGT+AGG + chr2_2:64155736-64155755 Msa0264240:intron 45.0%
! GTGAGTGCTTTGGGTTCATT+TGG + chr2_2:64156614-64156633 Msa0264240:CDS 45.0%
TATTCAGGTGGGCAAATGTC+AGG - chr2_2:64156773-64156792 None:intergenic 45.0%
TGAGCTTAGCTCAGTTGGTT+GGG + chr2_2:64157188-64157207 Msa0264240:intron 45.0%
!!! AACTTTTTTTGGTGGTGGCC+GGG - chr2_2:64157250-64157269 None:intergenic 45.0%
!!! GAACTTTTTTTGGTGGTGGC+CGG - chr2_2:64157251-64157270 None:intergenic 45.0%
GTTCACTGTCAACCCTACAT+AGG + chr2_2:64157267-64157286 Msa0264240:intron 45.0%
CCTGTAAAACTGCCCTATGT+AGG - chr2_2:64157283-64157302 None:intergenic 45.0%
! CCTACATAGGGCAGTTTTAC+AGG + chr2_2:64157280-64157299 Msa0264240:intron 45.0%
AGAGCTCCTGAGCCTATATT+CGG + chr2_2:64157347-64157366 Msa0264240:CDS 45.0%
ACACCACAGTCATTGACATC+TGG + chr2_2:64157381-64157400 Msa0264240:CDS 45.0%
TGACCAGATGTCAATGACTG+TGG - chr2_2:64157387-64157406 None:intergenic 45.0%
TCCACTATCACAGGAAACAG+TGG - chr2_2:64157533-64157552 None:intergenic 45.0%
TTGGTCTACTCCACTATCAC+AGG - chr2_2:64157542-64157561 None:intergenic 45.0%
TAGTGGAGTAGACCAACTTG+TGG + chr2_2:64157546-64157565 Msa0264240:exon 45.0%
! TTTTCATGTGGTTCACCTGC+AGG + chr2_2:64157712-64157731 Msa0264240:intron 45.0%
CTTGATTTCTTCCCTGGTTG+GGG - chr2_2:64157747-64157766 None:intergenic 45.0%
CACTTGATTTCTTCCCTGGT+TGG - chr2_2:64157749-64157768 None:intergenic 45.0%
CATGCACTTGATTTCTTCCC+TGG - chr2_2:64157753-64157772 None:intergenic 45.0%
!! TATAATTATATATATAAACT+TGG + chr2_2:64157791-64157810 Msa0264240:three_prime_UTR 5.0%
!! ATAATTATATATATAAACTT+GGG + chr2_2:64157792-64157811 Msa0264240:three_prime_UTR 5.0%
CTGAAACGACGTCGTTGGAT+AGG - chr2_2:64155354-64155373 None:intergenic 50.0%
ATCCAACGACGTCGTTTCAG+AGG + chr2_2:64155354-64155373 Msa0264240:CDS 50.0%
ATATGGGTCCCAACGCATCA+AGG + chr2_2:64155584-64155603 Msa0264240:intron 50.0%
AGGGCGCGTGAGAAATCAAT+AGG + chr2_2:64155731-64155750 Msa0264240:intron 50.0%
GGGCGCGTGAGAAATCAATA+GGG + chr2_2:64155732-64155751 Msa0264240:intron 50.0%
!! GCTGTCAAAACGGGCTAAAG+TGG + chr2_2:64155848-64155867 Msa0264240:intron 50.0%
TAGGTCAAGGATCGTCCACT+AGG + chr2_2:64156747-64156766 Msa0264240:CDS 50.0%
GGAAGAACTCTCTGAGCTTC+AGG + chr2_2:64156796-64156815 Msa0264240:CDS 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG + chr2_2:64157187-64157206 Msa0264240:intron 50.0%
GTTGCACCGAATATAGGCTC+AGG - chr2_2:64157356-64157375 None:intergenic 50.0%
GTCATTGACATCTGGTCAGC+TGG + chr2_2:64157389-64157408 Msa0264240:CDS 50.0%
! TGGTGAACTTTTGCTTGGCC+AGG + chr2_2:64157421-64157440 Msa0264240:CDS 50.0%
GCCACTGTTTCCTGTGATAG+TGG + chr2_2:64157529-64157548 Msa0264240:intron 50.0%
! GTGGTTCACCTGCAGGTTTT+AGG + chr2_2:64157719-64157738 Msa0264240:intron 50.0%
! TTGGGGTACCTAAAACCTGC+AGG - chr2_2:64157730-64157749 None:intergenic 50.0%
!!! AGGTTTTAGGTACCCCAACC+AGG + chr2_2:64157732-64157751 Msa0264240:intron 50.0%
!!! GGTTTTAGGTACCCCAACCA+GGG + chr2_2:64157733-64157752 Msa0264240:intron 50.0%
!! TGCCTCTGAAACGACGTCGT+TGG - chr2_2:64155359-64155378 None:intergenic 55.0%
TGGGCAAATGTCAGGCCTAG+TGG - chr2_2:64156765-64156784 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr2_2:64157186-64157205 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr2_2:64157183-64157202 Msa0264240:intron 55.0%
TGGTCAGCTGGTTGCGTACT+TGG + chr2_2:64157401-64157420 Msa0264240:CDS 55.0%
AAGGTCCGGGGTTCGATTCC+CGG + chr2_2:64157229-64157248 Msa0264240:intron 60.0%
GGTGGCCGGGAATCGAACCC+CGG - chr2_2:64157237-64157256 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 64155282 64158067 64155282 ID=Msa0264240;Name=Msa0264240
chr2_2 mRNA 64155282 64158067 64155282 ID=Msa0264240-mRNA-1;Parent=Msa0264240;Name=Msa0264240-mRNA-1;_AED=0.06;_eAED=0.33;_QI=0|0.5|0.6|1|0.75|0.8|5|357|207
chr2_2 exon 64155282 64155556 64155282 ID=Msa0264240-mRNA-1:exon:19977;Parent=Msa0264240-mRNA-1
chr2_2 exon 64156601 64156819 64156601 ID=Msa0264240-mRNA-1:exon:19978;Parent=Msa0264240-mRNA-1
chr2_2 exon 64157340 64157442 64157340 ID=Msa0264240-mRNA-1:exon:19979;Parent=Msa0264240-mRNA-1
chr2_2 exon 64157530 64157579 64157530 ID=Msa0264240-mRNA-1:exon:19980;Parent=Msa0264240-mRNA-1
chr2_2 exon 64157734 64158067 64157734 ID=Msa0264240-mRNA-1:exon:19981;Parent=Msa0264240-mRNA-1
chr2_2 CDS 64155282 64155556 64155282 ID=Msa0264240-mRNA-1:cds;Parent=Msa0264240-mRNA-1
chr2_2 CDS 64156601 64156819 64156601 ID=Msa0264240-mRNA-1:cds;Parent=Msa0264240-mRNA-1
chr2_2 CDS 64157340 64157442 64157340 ID=Msa0264240-mRNA-1:cds;Parent=Msa0264240-mRNA-1
chr2_2 CDS 64157530 64157556 64157530 ID=Msa0264240-mRNA-1:cds;Parent=Msa0264240-mRNA-1
chr2_2 three_prime_UTR 64157557 64157579 64157557 ID=Msa0264240-mRNA-1:three_prime_utr;Parent=Msa0264240-mRNA-1
chr2_2 three_prime_UTR 64157734 64158067 64157734 ID=Msa0264240-mRNA-1:three_prime_utr;Parent=Msa0264240-mRNA-1
Gene Sequence

>Msa0264240

ATGACTACAGTTGCAACAACACAACCATGTTATTCATCATGGACTCGTGGTTCAATTCCCAGTTCAATTCCTATCCAACGACGTCGTTTCAGAGGCAAAACCTACCTCAAACGTCTCAAAATTCTTGCTGCTGTGGTGGAAGAAACAACACCTACAAGTAACATCGTACCTTTGGTTAGAAATGGAACAAACCGTGTTCTTACACTTCCATTGAACCGTGCTGATGATATTCAAGCTGAGGCTAGAGCTATGACACGTGCTATTAATGCTACTCTGGCTGTTGAAATTGTGAGTGCTTTGGGTTCATTTGGGTTGAAACTGTTTTTAGAGCAAAAGAATGGGACACTTGATAAGAATAAAAAGGCACGTGGTACTGAATTGAAGACCATATTCACAAATTTGGGACCAACTTTTGTGAAGTTAGGTCAAGGATCGTCCACTAGGCCTGACATTTGCCCACCTGAATATTTGGAAGAACTCTCTGAGCTTCAGGTGTACTATAGAGCTCCTGAGCCTATATTCGGTGCAACTGAGTACACCACAGTCATTGACATCTGGTCAGCTGGTTGCGTACTTGGTGAACTTTTGCTTGGCCAGCCACTGTTTCCTGTGATAGTGGAGTAG

Protein sequence

>Msa0264240

MTTVATTQPCYSSWTRGSIPSSIPIQRRRFRGKTYLKRLKILAAVVEETTPTSNIVPLVRNGTNRVLTLPLNRADDIQAEARAMTRAINATLAVEIVSALGSFGLKLFLEQKNGTLDKNKKARGTELKTIFTNLGPTFVKLGQGSSTRPDICPPEYLEELSELQVYYRAPEPIFGATEYTTVIDIWSAGCVLGELLLGQPLFPVIVE*