Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347010 | XP_013452197.1 | 94.231 | 156 | 9 | 0 | 3 | 158 | 2 | 157 | 4.75e-106 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347010 | sp|Q6PBM8|RBM18_DANRE | 39.310 | 145 | 74 | 4 | 6 | 144 | 17 | 153 | 1.26e-22 | 91.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347010 | G7JDR6 | 94.231 | 156 | 9 | 0 | 3 | 158 | 2 | 157 | 2.27e-106 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027580 | Msa1347010 | 0.806935 | 6.460101e-50 | -8.615850e-47 |
| Msa0057140 | Msa1347010 | 0.804983 | 1.662064e-49 | -8.615850e-47 |
| Msa0075340 | Msa1347010 | 0.806419 | 8.301830e-50 | -8.615850e-47 |
| Msa1347010 | Msa1366650 | 0.819028 | 1.439606e-52 | -8.615850e-47 |
| Msa1347010 | Msa1368210 | 0.800159 | 1.642704e-48 | -8.615850e-47 |
| Msa1347010 | Msa1397050 | 0.806179 | 9.326518e-50 | -8.615850e-47 |
| Msa1347010 | Msa1397940 | 0.800962 | 1.126853e-48 | -8.615850e-47 |
| Msa1347010 | Msa1465960 | 0.803174 | 3.954420e-49 | -8.615850e-47 |
| Msa0607510 | Msa1347010 | 0.810950 | 8.932820e-51 | -8.615850e-47 |
| Msa0692940 | Msa1347010 | 0.801480 | 8.826231e-49 | -8.615850e-47 |
| Msa0735310 | Msa1347010 | 0.801387 | 9.224547e-49 | -8.615850e-47 |
| Msa0787750 | Msa1347010 | 0.802827 | 4.664277e-49 | -8.615850e-47 |
| Msa0805500 | Msa1347010 | 0.803464 | 3.443148e-49 | -8.615850e-47 |
| Msa0154770 | Msa1347010 | 0.803329 | 3.672161e-49 | -8.615850e-47 |
| Msa0182280 | Msa1347010 | 0.812455 | 4.204160e-51 | -8.615850e-47 |
| Msa0236270 | Msa1347010 | 0.817790 | 2.747390e-52 | -8.615850e-47 |
| Msa0275680 | Msa1347010 | -0.800238 | 1.583159e-48 | -8.615850e-47 |
| Msa0493920 | Msa1347010 | 0.817678 | 2.912074e-52 | -8.615850e-47 |
| Msa0847080 | Msa1347010 | 0.810668 | 1.028000e-50 | -8.615850e-47 |
| Msa0871780 | Msa1347010 | 0.809307 | 2.018635e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347010 | MtrunA17_Chr6g0468671 | 94.231 | 156 | 9 | 0 | 3 | 158 | 2 | 157 | 4.37e-110 | 309 |
| Msa1347010 | MtrunA17_Chr6g0472291 | 93.590 | 156 | 10 | 0 | 3 | 158 | 2 | 157 | 4.11e-108 | 304 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347010 | AT5G52545.2 | 65.584 | 154 | 50 | 3 | 3 | 153 | 2 | 155 | 2.92e-68 | 204 |
| Msa1347010 | AT5G52545.1 | 50.633 | 79 | 36 | 3 | 78 | 153 | 1 | 79 | 1.33e-17 | 73.2 |
| Msa1347010 | AT1G71770.1 | 39.744 | 78 | 43 | 1 | 16 | 93 | 344 | 417 | 2.74e-11 | 60.8 |
| Msa1347010 | AT1G71770.2 | 39.744 | 78 | 43 | 1 | 16 | 93 | 344 | 417 | 2.74e-11 | 60.8 |
Find 45 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACTCAACTTCTGTTTCT+TGG | 0.177320 | tig0009298:+6280 | None:intergenic |
| CCGCGTGGCTCCCCACGTTT+TGG | 0.222599 | tig0009298:+6683 | None:intergenic |
| CCATTGGTTGTTCGTCTTGC+GGG | 0.264769 | tig0009298:-6464 | Msa1347010:CDS |
| GAACAAGTTAAAGTCTTTAG+AGG | 0.349023 | tig0009298:-6318 | Msa1347010:CDS |
| TTGTTCGTCTTGCGGGTGAT+AGG | 0.354190 | tig0009298:-6457 | Msa1347010:CDS |
| GTTAGCTTGCAGCCGGCCAT+TGG | 0.456318 | tig0009298:-6480 | Msa1347010:CDS |
| TTTGATGTATTACTGAATGC+AGG | 0.479748 | tig0009298:-7364 | Msa1347010:exon |
| GCCATTGGTTGTTCGTCTTG+CGG | 0.485333 | tig0009298:-6465 | Msa1347010:CDS |
| CATATCACTGGTGGTGGCAT+GGG | 0.485594 | tig0009298:-6377 | Msa1347010:CDS |
| GAGAATGCAGGAAGCAGTAT+TGG | 0.492514 | tig0009298:-6525 | Msa1347010:intron |
| TGATAGGTACGCCCTGGAAA+AGG | 0.496855 | tig0009298:-6441 | Msa1347010:CDS |
| TACTGAATGCAGGATCCTAA+TGG | 0.501601 | tig0009298:-7354 | Msa1347010:exon |
| TTATCATCAACAGAACCATT+AGG | 0.503711 | tig0009298:+7339 | None:intergenic |
| ACATATCACTGGTGGTGGCA+TGG | 0.517562 | tig0009298:-6378 | Msa1347010:CDS |
| CACACACGTGGCCCAAAACG+TGG | 0.518642 | tig0009298:-6695 | Msa1347010:CDS |
| TGCGGGTGATAGGTACGCCC+TGG | 0.531979 | tig0009298:-6447 | Msa1347010:CDS |
| AGTTCCACAATACATTGAGA+TGG | 0.541205 | tig0009298:+7390 | None:intergenic |
| ACGGAAGGTTAGCTTGCAGC+CGG | 0.546178 | tig0009298:-6487 | Msa1347010:CDS |
| TTTCCCATCTCAATGTATTG+TGG | 0.547065 | tig0009298:-7394 | Msa1347010:five_prime_UTR |
| TCGGACACGATCTTTCCATA+AGG | 0.558347 | tig0009298:+6731 | None:intergenic |
| CATCCAGTACAGCACAAAAG+AGG | 0.560335 | tig0009298:-6651 | Msa1347010:intron |
| GTTCCACAATACATTGAGAT+GGG | 0.566676 | tig0009298:+7391 | None:intergenic |
| CAAGTTAAAGTCTTTAGAGG+AGG | 0.568496 | tig0009298:-6315 | Msa1347010:CDS |
| GGGCACAAGTTACATATCAC+TGG | 0.573676 | tig0009298:-6389 | Msa1347010:CDS |
| GACTTCTTGTGGCACACACG+TGG | 0.575537 | tig0009298:-6707 | Msa1347010:CDS |
| AGTAAAATTTGTATAATCAG+AGG | 0.576806 | tig0009298:-6231 | Msa1347010:three_prime_UTR |
| TGGGAAATATCAATATCCAC+TGG | 0.583580 | tig0009298:+7410 | None:intergenic |
| CCCGCAAGACGAACAACCAA+TGG | 0.591312 | tig0009298:+6464 | None:intergenic |
| TCTACAAAAGCAGTAAGTGA+AGG | 0.597671 | tig0009298:-6410 | Msa1347010:CDS |
| CCAAGGAGAAAATGCACGGA+AGG | 0.600257 | tig0009298:-6502 | Msa1347010:CDS |
| CAAGACGAACAACCAATGGC+CGG | 0.602369 | tig0009298:+6468 | None:intergenic |
| CTACAAAAGCAGTAAGTGAA+GGG | 0.604556 | tig0009298:-6409 | Msa1347010:CDS |
| AAGTTACATATCACTGGTGG+TGG | 0.620203 | tig0009298:-6383 | Msa1347010:CDS |
| GCAGGAAGCAGTATTGGCCA+AGG | 0.621721 | tig0009298:-6519 | Msa1347010:intron |
| CAGTATCTAAATTGATCCAG+TGG | 0.626375 | tig0009298:-7426 | None:intergenic |
| ACACACGTGGCCCAAAACGT+GGG | 0.630705 | tig0009298:-6694 | Msa1347010:CDS |
| CACACGTGGCCCAAAACGTG+GGG | 0.647123 | tig0009298:-6693 | Msa1347010:CDS |
| TTATGGAAAGATCGTGTCCG+AGG | 0.648307 | tig0009298:-6729 | Msa1347010:CDS |
| TTGGCCAAGGAGAAAATGCA+CGG | 0.651039 | tig0009298:-6506 | Msa1347010:CDS |
| TCGTGTCCGAGGACTTCTTG+TGG | 0.660976 | tig0009298:-6718 | Msa1347010:CDS |
| TGTGAAAATAGACTCTACGT+TGG | 0.685631 | tig0009298:-7315 | Msa1347010:CDS |
| CACAAGTTACATATCACTGG+TGG | 0.696310 | tig0009298:-6386 | Msa1347010:CDS |
| TGTGTGCCACAAGAAGTCCT+CGG | 0.700417 | tig0009298:+6712 | None:intergenic |
| CCAAAACGTGGGGAGCCACG+CGG | 0.716629 | tig0009298:-6683 | Msa1347010:CDS |
| TGGATGAAAGCGAAACCGCG+TGG | 0.757806 | tig0009298:+6668 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCTTATTTTTTATATATTTT+TGG | - | tig0009298:6319-6338 | Msa1347010:CDS | 10.0% |
| !!! | GCTTATTTTTTATATATTTT+TGG | - | tig0009298:6319-6338 | Msa1347010:CDS | 10.0% |
| !! | AGTAAAATTTGTATAATCAG+AGG | - | tig0009298:7330-7349 | Msa1347010:CDS | 20.0% |
| !! | AGTAAAATTTGTATAATCAG+AGG | - | tig0009298:7330-7349 | Msa1347010:CDS | 20.0% |
| ! | ATAAAAAATAAGCCATGTTG+AGG | + | tig0009298:6312-6331 | None:intergenic | 25.0% |
| ! | AAAAACAGCACTTAATACAT+TGG | + | tig0009298:6428-6447 | None:intergenic | 25.0% |
| ! | AAGAATATGCATATAGTACA+AGG | + | tig0009298:6754-6773 | None:intergenic | 25.0% |
| ! | ATAAAAAATAAGCCATGTTG+AGG | + | tig0009298:6312-6331 | None:intergenic | 25.0% |
| ! | AAAAACAGCACTTAATACAT+TGG | + | tig0009298:6428-6447 | None:intergenic | 25.0% |
| ! | AAGAATATGCATATAGTACA+AGG | + | tig0009298:6754-6773 | None:intergenic | 25.0% |
| TTTGATGTATTACTGAATGC+AGG | - | tig0009298:6197-6216 | Msa1347010:three_prime_UTR | 30.0% | |
| TTATCATCAACAGAACCATT+AGG | + | tig0009298:6225-6244 | None:intergenic | 30.0% | |
| AACGCTAATATTACTTGTGA+AGG | - | tig0009298:6344-6363 | Msa1347010:CDS | 30.0% | |
| ! | AAGTGTGCATTGAAAAGTAT+AGG | - | tig0009298:6390-6409 | Msa1347010:CDS | 30.0% |
| TCGATTTCTTAAAGCATGTT+TGG | - | tig0009298:6469-6488 | Msa1347010:CDS | 30.0% | |
| ACCTATATTTGAATCTCTCT+TGG | + | tig0009298:6545-6564 | None:intergenic | 30.0% | |
| ATAACTATTGCCATGACAAA+CGG | - | tig0009298:6598-6617 | Msa1347010:intron | 30.0% | |
| ! | CTCAAAATGTTTTCTCCTTA+TGG | - | tig0009298:6815-6834 | Msa1347010:intron | 30.0% |
| !! | ACCTCATTTATTTCTATGGA+CGG | + | tig0009298:6953-6972 | None:intergenic | 30.0% |
| !! | ACGTACCTCATTTATTTCTA+TGG | + | tig0009298:6957-6976 | None:intergenic | 30.0% |
| GAACAAGTTAAAGTCTTTAG+AGG | - | tig0009298:7243-7262 | Msa1347010:intron | 30.0% | |
| TTTGATGTATTACTGAATGC+AGG | - | tig0009298:6197-6216 | Msa1347010:three_prime_UTR | 30.0% | |
| TTATCATCAACAGAACCATT+AGG | + | tig0009298:6225-6244 | None:intergenic | 30.0% | |
| AACGCTAATATTACTTGTGA+AGG | - | tig0009298:6344-6363 | Msa1347010:CDS | 30.0% | |
| ! | AAGTGTGCATTGAAAAGTAT+AGG | - | tig0009298:6390-6409 | Msa1347010:CDS | 30.0% |
| TCGATTTCTTAAAGCATGTT+TGG | - | tig0009298:6469-6488 | Msa1347010:CDS | 30.0% | |
| ACCTATATTTGAATCTCTCT+TGG | + | tig0009298:6545-6564 | None:intergenic | 30.0% | |
| ATAACTATTGCCATGACAAA+CGG | - | tig0009298:6598-6617 | Msa1347010:intron | 30.0% | |
| ! | CTCAAAATGTTTTCTCCTTA+TGG | - | tig0009298:6815-6834 | Msa1347010:intron | 30.0% |
| !! | ACCTCATTTATTTCTATGGA+CGG | + | tig0009298:6953-6972 | None:intergenic | 30.0% |
| !! | ACGTACCTCATTTATTTCTA+TGG | + | tig0009298:6957-6976 | None:intergenic | 30.0% |
| GAACAAGTTAAAGTCTTTAG+AGG | - | tig0009298:7243-7262 | Msa1347010:intron | 30.0% | |
| TGGGAAATATCAATATCCAC+TGG | + | tig0009298:6154-6173 | None:intergenic | 35.0% | |
| TTTCCCATCTCAATGTATTG+TGG | - | tig0009298:6167-6186 | Msa1347010:three_prime_UTR | 35.0% | |
| GTTCCACAATACATTGAGAT+GGG | + | tig0009298:6173-6192 | None:intergenic | 35.0% | |
| AGTTCCACAATACATTGAGA+TGG | + | tig0009298:6174-6193 | None:intergenic | 35.0% | |
| TGTGAAAATAGACTCTACGT+TGG | - | tig0009298:6246-6265 | Msa1347010:three_prime_UTR | 35.0% | |
| !! | TTACTTGTGAAGGCTTGTTA+AGG | - | tig0009298:6354-6373 | Msa1347010:CDS | 35.0% |
| ! | GCTTGTTAAGGAATCAAAGA+TGG | - | tig0009298:6366-6385 | Msa1347010:CDS | 35.0% |
| GCCAAGAGAGATTCAAATAT+AGG | - | tig0009298:6541-6560 | Msa1347010:intron | 35.0% | |
| AAGTTTGGATTTCTGATCTG+AGG | + | tig0009298:6575-6594 | None:intergenic | 35.0% | |
| GGCAATAGTTATTGCAAGTT+TGG | + | tig0009298:6590-6609 | None:intergenic | 35.0% | |
| CAATTGCATCATGATATGAC+TGG | - | tig0009298:6658-6677 | Msa1347010:CDS | 35.0% | |
| ! | CATCAGAAACCTAGATTTTG+TGG | - | tig0009298:6707-6726 | Msa1347010:CDS | 35.0% |
| TCCGTCCATAGAAATAAATG+AGG | - | tig0009298:6949-6968 | Msa1347010:intron | 35.0% | |
| !! | CTGCATTCTCACTTTAAGAT+TGG | + | tig0009298:7026-7045 | None:intergenic | 35.0% |
| CAATCTTAAAGTGAGAATGC+AGG | - | tig0009298:7024-7043 | Msa1347010:intron | 35.0% | |
| TCTACAAAAGCAGTAAGTGA+AGG | - | tig0009298:7151-7170 | Msa1347010:intron | 35.0% | |
| CTACAAAAGCAGTAAGTGAA+GGG | - | tig0009298:7152-7171 | Msa1347010:intron | 35.0% | |
| ! | CAAGTTAAAGTCTTTAGAGG+AGG | - | tig0009298:7246-7265 | Msa1347010:intron | 35.0% |
| TGGGAAATATCAATATCCAC+TGG | + | tig0009298:6154-6173 | None:intergenic | 35.0% | |
| TTTCCCATCTCAATGTATTG+TGG | - | tig0009298:6167-6186 | Msa1347010:three_prime_UTR | 35.0% | |
| GTTCCACAATACATTGAGAT+GGG | + | tig0009298:6173-6192 | None:intergenic | 35.0% | |
| AGTTCCACAATACATTGAGA+TGG | + | tig0009298:6174-6193 | None:intergenic | 35.0% | |
| TGTGAAAATAGACTCTACGT+TGG | - | tig0009298:6246-6265 | Msa1347010:three_prime_UTR | 35.0% | |
| !! | TTACTTGTGAAGGCTTGTTA+AGG | - | tig0009298:6354-6373 | Msa1347010:CDS | 35.0% |
| ! | GCTTGTTAAGGAATCAAAGA+TGG | - | tig0009298:6366-6385 | Msa1347010:CDS | 35.0% |
| GCCAAGAGAGATTCAAATAT+AGG | - | tig0009298:6541-6560 | Msa1347010:intron | 35.0% | |
| AAGTTTGGATTTCTGATCTG+AGG | + | tig0009298:6575-6594 | None:intergenic | 35.0% | |
| GGCAATAGTTATTGCAAGTT+TGG | + | tig0009298:6590-6609 | None:intergenic | 35.0% | |
| CAATTGCATCATGATATGAC+TGG | - | tig0009298:6658-6677 | Msa1347010:CDS | 35.0% | |
| ! | CATCAGAAACCTAGATTTTG+TGG | - | tig0009298:6707-6726 | Msa1347010:CDS | 35.0% |
| TCCGTCCATAGAAATAAATG+AGG | - | tig0009298:6949-6968 | Msa1347010:intron | 35.0% | |
| !! | CTGCATTCTCACTTTAAGAT+TGG | + | tig0009298:7026-7045 | None:intergenic | 35.0% |
| CAATCTTAAAGTGAGAATGC+AGG | - | tig0009298:7024-7043 | Msa1347010:intron | 35.0% | |
| TCTACAAAAGCAGTAAGTGA+AGG | - | tig0009298:7151-7170 | Msa1347010:intron | 35.0% | |
| CTACAAAAGCAGTAAGTGAA+GGG | - | tig0009298:7152-7171 | Msa1347010:intron | 35.0% | |
| ! | CAAGTTAAAGTCTTTAGAGG+AGG | - | tig0009298:7246-7265 | Msa1347010:intron | 35.0% |
| TACTGAATGCAGGATCCTAA+TGG | - | tig0009298:6207-6226 | Msa1347010:three_prime_UTR | 40.0% | |
| TGTATTCGTGACCATGATTG+AGG | + | tig0009298:6689-6708 | None:intergenic | 40.0% | |
| ACAAGGAAAAGAAACCGAAC+AGG | + | tig0009298:6737-6756 | None:intergenic | 40.0% | |
| ! | AATGATGGAGACAGAGAAAG+AGG | + | tig0009298:6779-6798 | None:intergenic | 40.0% |
| CACAAGTTACATATCACTGG+TGG | - | tig0009298:7175-7194 | Msa1347010:intron | 40.0% | |
| AAGTTACATATCACTGGTGG+TGG | - | tig0009298:7178-7197 | Msa1347010:intron | 40.0% | |
| ! | GTCACTCAACTTCTGTTTCT+TGG | + | tig0009298:7284-7303 | None:intergenic | 40.0% |
| TACTGAATGCAGGATCCTAA+TGG | - | tig0009298:6207-6226 | Msa1347010:three_prime_UTR | 40.0% | |
| TGTATTCGTGACCATGATTG+AGG | + | tig0009298:6689-6708 | None:intergenic | 40.0% | |
| ACAAGGAAAAGAAACCGAAC+AGG | + | tig0009298:6737-6756 | None:intergenic | 40.0% | |
| ! | AATGATGGAGACAGAGAAAG+AGG | + | tig0009298:6779-6798 | None:intergenic | 40.0% |
| CACAAGTTACATATCACTGG+TGG | - | tig0009298:7175-7194 | Msa1347010:intron | 40.0% | |
| AAGTTACATATCACTGGTGG+TGG | - | tig0009298:7178-7197 | Msa1347010:intron | 40.0% | |
| ! | GTCACTCAACTTCTGTTTCT+TGG | + | tig0009298:7284-7303 | None:intergenic | 40.0% |
| ACAGGTGTGCCACAAAATCT+AGG | + | tig0009298:6719-6738 | None:intergenic | 45.0% | |
| ! | GATTTTGTGGCACACCTGTT+CGG | - | tig0009298:6720-6739 | Msa1347010:CDS | 45.0% |
| !! | AGAGCAGCTCTGGAAAATGA+TGG | + | tig0009298:6794-6813 | None:intergenic | 45.0% |
| TCGGACACGATCTTTCCATA+AGG | + | tig0009298:6833-6852 | None:intergenic | 45.0% | |
| TTATGGAAAGATCGTGTCCG+AGG | - | tig0009298:6832-6851 | Msa1347010:intron | 45.0% | |
| CATCCAGTACAGCACAAAAG+AGG | - | tig0009298:6910-6929 | Msa1347010:intron | 45.0% | |
| ! | GTACCTCTTTTGTGCTGTAC+TGG | + | tig0009298:6916-6935 | None:intergenic | 45.0% |
| GAGAATGCAGGAAGCAGTAT+TGG | - | tig0009298:7036-7055 | Msa1347010:intron | 45.0% | |
| TTGGCCAAGGAGAAAATGCA+CGG | - | tig0009298:7055-7074 | Msa1347010:intron | 45.0% | |
| ! | AGAGCTATCTGCCTTTTCCA+GGG | + | tig0009298:7134-7153 | None:intergenic | 45.0% |
| ! | TAGAGCTATCTGCCTTTTCC+AGG | + | tig0009298:7135-7154 | None:intergenic | 45.0% |
| GGGCACAAGTTACATATCAC+TGG | - | tig0009298:7172-7191 | Msa1347010:intron | 45.0% | |
| ACAGGTGTGCCACAAAATCT+AGG | + | tig0009298:6719-6738 | None:intergenic | 45.0% | |
| ! | GATTTTGTGGCACACCTGTT+CGG | - | tig0009298:6720-6739 | Msa1347010:CDS | 45.0% |
| !! | AGAGCAGCTCTGGAAAATGA+TGG | + | tig0009298:6794-6813 | None:intergenic | 45.0% |
| TCGGACACGATCTTTCCATA+AGG | + | tig0009298:6833-6852 | None:intergenic | 45.0% | |
| TTATGGAAAGATCGTGTCCG+AGG | - | tig0009298:6832-6851 | Msa1347010:intron | 45.0% | |
| CATCCAGTACAGCACAAAAG+AGG | - | tig0009298:6910-6929 | Msa1347010:intron | 45.0% | |
| ! | GTACCTCTTTTGTGCTGTAC+TGG | + | tig0009298:6916-6935 | None:intergenic | 45.0% |
| GAGAATGCAGGAAGCAGTAT+TGG | - | tig0009298:7036-7055 | Msa1347010:intron | 45.0% | |
| TTGGCCAAGGAGAAAATGCA+CGG | - | tig0009298:7055-7074 | Msa1347010:intron | 45.0% | |
| ! | AGAGCTATCTGCCTTTTCCA+GGG | + | tig0009298:7134-7153 | None:intergenic | 45.0% |
| ! | TAGAGCTATCTGCCTTTTCC+AGG | + | tig0009298:7135-7154 | None:intergenic | 45.0% |
| GGGCACAAGTTACATATCAC+TGG | - | tig0009298:7172-7191 | Msa1347010:intron | 45.0% | |
| ATTCCTGCGACCGTTTGTCA+TGG | + | tig0009298:6611-6630 | None:intergenic | 50.0% | |
| !! | GACTGGTTCGACCTCAATCA+TGG | - | tig0009298:6675-6694 | Msa1347010:CDS | 50.0% |
| ! | CATTTTGAGCAGAGCAGCTC+TGG | + | tig0009298:6804-6823 | None:intergenic | 50.0% |
| TGTGTGCCACAAGAAGTCCT+CGG | + | tig0009298:6852-6871 | None:intergenic | 50.0% | |
| ! | CCTTCCGTGCATTTTCTCCT+TGG | + | tig0009298:7062-7081 | None:intergenic | 50.0% |
| CCAAGGAGAAAATGCACGGA+AGG | - | tig0009298:7059-7078 | Msa1347010:intron | 50.0% | |
| CAAGACGAACAACCAATGGC+CGG | + | tig0009298:7096-7115 | None:intergenic | 50.0% | |
| ! | GCCATTGGTTGTTCGTCTTG+CGG | - | tig0009298:7096-7115 | Msa1347010:intron | 50.0% |
| ! | CCATTGGTTGTTCGTCTTGC+GGG | - | tig0009298:7097-7116 | Msa1347010:intron | 50.0% |
| TTGTTCGTCTTGCGGGTGAT+AGG | - | tig0009298:7104-7123 | Msa1347010:intron | 50.0% | |
| TGATAGGTACGCCCTGGAAA+AGG | - | tig0009298:7120-7139 | Msa1347010:intron | 50.0% | |
| !! | ACATATCACTGGTGGTGGCA+TGG | - | tig0009298:7183-7202 | Msa1347010:intron | 50.0% |
| !! | CATATCACTGGTGGTGGCAT+GGG | - | tig0009298:7184-7203 | Msa1347010:intron | 50.0% |
| ATTCCTGCGACCGTTTGTCA+TGG | + | tig0009298:6611-6630 | None:intergenic | 50.0% | |
| !! | GACTGGTTCGACCTCAATCA+TGG | - | tig0009298:6675-6694 | Msa1347010:CDS | 50.0% |
| ! | CATTTTGAGCAGAGCAGCTC+TGG | + | tig0009298:6804-6823 | None:intergenic | 50.0% |
| TGTGTGCCACAAGAAGTCCT+CGG | + | tig0009298:6852-6871 | None:intergenic | 50.0% | |
| ! | CCTTCCGTGCATTTTCTCCT+TGG | + | tig0009298:7062-7081 | None:intergenic | 50.0% |
| CCAAGGAGAAAATGCACGGA+AGG | - | tig0009298:7059-7078 | Msa1347010:intron | 50.0% | |
| CAAGACGAACAACCAATGGC+CGG | + | tig0009298:7096-7115 | None:intergenic | 50.0% | |
| ! | GCCATTGGTTGTTCGTCTTG+CGG | - | tig0009298:7096-7115 | Msa1347010:intron | 50.0% |
| ! | CCATTGGTTGTTCGTCTTGC+GGG | - | tig0009298:7097-7116 | Msa1347010:intron | 50.0% |
| TTGTTCGTCTTGCGGGTGAT+AGG | - | tig0009298:7104-7123 | Msa1347010:intron | 50.0% | |
| TGATAGGTACGCCCTGGAAA+AGG | - | tig0009298:7120-7139 | Msa1347010:intron | 50.0% | |
| !! | ACATATCACTGGTGGTGGCA+TGG | - | tig0009298:7183-7202 | Msa1347010:intron | 50.0% |
| !! | CATATCACTGGTGGTGGCAT+GGG | - | tig0009298:7184-7203 | Msa1347010:intron | 50.0% |
| !! | GACTCGCTGACTCCTCAACA+TGG | - | tig0009298:6297-6316 | Msa1347010:CDS | 55.0% |
| TTGCCATGACAAACGGTCGC+AGG | - | tig0009298:6605-6624 | Msa1347010:intron | 55.0% | |
| TCGTGTCCGAGGACTTCTTG+TGG | - | tig0009298:6843-6862 | Msa1347010:intron | 55.0% | |
| GACTTCTTGTGGCACACACG+TGG | - | tig0009298:6854-6873 | Msa1347010:intron | 55.0% | |
| ACACACGTGGCCCAAAACGT+GGG | - | tig0009298:6867-6886 | Msa1347010:intron | 55.0% | |
| TGGATGAAAGCGAAACCGCG+TGG | + | tig0009298:6896-6915 | None:intergenic | 55.0% | |
| !! | GCAGGAAGCAGTATTGGCCA+AGG | - | tig0009298:7042-7061 | Msa1347010:intron | 55.0% |
| !! | ACGGAAGGTTAGCTTGCAGC+CGG | - | tig0009298:7074-7093 | Msa1347010:intron | 55.0% |
| CCCGCAAGACGAACAACCAA+TGG | + | tig0009298:7100-7119 | None:intergenic | 55.0% | |
| !! | GACTCGCTGACTCCTCAACA+TGG | - | tig0009298:6297-6316 | Msa1347010:CDS | 55.0% |
| TTGCCATGACAAACGGTCGC+AGG | - | tig0009298:6605-6624 | Msa1347010:intron | 55.0% | |
| TCGTGTCCGAGGACTTCTTG+TGG | - | tig0009298:6843-6862 | Msa1347010:intron | 55.0% | |
| GACTTCTTGTGGCACACACG+TGG | - | tig0009298:6854-6873 | Msa1347010:intron | 55.0% | |
| ACACACGTGGCCCAAAACGT+GGG | - | tig0009298:6867-6886 | Msa1347010:intron | 55.0% | |
| TGGATGAAAGCGAAACCGCG+TGG | + | tig0009298:6896-6915 | None:intergenic | 55.0% | |
| !! | GCAGGAAGCAGTATTGGCCA+AGG | - | tig0009298:7042-7061 | Msa1347010:intron | 55.0% |
| !! | ACGGAAGGTTAGCTTGCAGC+CGG | - | tig0009298:7074-7093 | Msa1347010:intron | 55.0% |
| CCCGCAAGACGAACAACCAA+TGG | + | tig0009298:7100-7119 | None:intergenic | 55.0% | |
| CACACACGTGGCCCAAAACG+TGG | - | tig0009298:6866-6885 | Msa1347010:intron | 60.0% | |
| CACACGTGGCCCAAAACGTG+GGG | - | tig0009298:6868-6887 | Msa1347010:intron | 60.0% | |
| !! | GTTAGCTTGCAGCCGGCCAT+TGG | - | tig0009298:7081-7100 | Msa1347010:intron | 60.0% |
| CACACACGTGGCCCAAAACG+TGG | - | tig0009298:6866-6885 | Msa1347010:intron | 60.0% | |
| CACACGTGGCCCAAAACGTG+GGG | - | tig0009298:6868-6887 | Msa1347010:intron | 60.0% | |
| !! | GTTAGCTTGCAGCCGGCCAT+TGG | - | tig0009298:7081-7100 | Msa1347010:intron | 60.0% |
| ! | CGCGTGGCTCCCCACGTTTT+GGG | + | tig0009298:6880-6899 | None:intergenic | 65.0% |
| CCAAAACGTGGGGAGCCACG+CGG | - | tig0009298:6878-6897 | Msa1347010:intron | 65.0% | |
| TGCGGGTGATAGGTACGCCC+TGG | - | tig0009298:7114-7133 | Msa1347010:intron | 65.0% | |
| ! | CGCGTGGCTCCCCACGTTTT+GGG | + | tig0009298:6880-6899 | None:intergenic | 65.0% |
| CCAAAACGTGGGGAGCCACG+CGG | - | tig0009298:6878-6897 | Msa1347010:intron | 65.0% | |
| TGCGGGTGATAGGTACGCCC+TGG | - | tig0009298:7114-7133 | Msa1347010:intron | 65.0% | |
| ! | CCGCGTGGCTCCCCACGTTT+TGG | + | tig0009298:6881-6900 | None:intergenic | 70.0% |
| ! | CCGCGTGGCTCCCCACGTTT+TGG | + | tig0009298:6881-6900 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0009298 | gene | 6146 | 7437 | 6146 | ID=Msa1347010;Name=Msa1347010 |
| tig0009298 | mRNA | 6146 | 7437 | 6146 | ID=Msa1347010-mRNA-1;Parent=Msa1347010;Name=Msa1347010-mRNA-1;_AED=0.18;_eAED=0.18;_QI=67|1|1|1|1|1|3|122|158 |
| tig0009298 | exon | 6146 | 6537 | 6146 | ID=Msa1347010-mRNA-1:exon:5762;Parent=Msa1347010-mRNA-1 |
| tig0009298 | exon | 6652 | 6778 | 6652 | ID=Msa1347010-mRNA-1:exon:5761;Parent=Msa1347010-mRNA-1 |
| tig0009298 | exon | 7291 | 7437 | 7291 | ID=Msa1347010-mRNA-1:exon:5760;Parent=Msa1347010-mRNA-1 |
| tig0009298 | five_prime_UTR | 7371 | 7437 | 7371 | ID=Msa1347010-mRNA-1:five_prime_utr;Parent=Msa1347010-mRNA-1 |
| tig0009298 | CDS | 7291 | 7370 | 7291 | ID=Msa1347010-mRNA-1:cds;Parent=Msa1347010-mRNA-1 |
| tig0009298 | CDS | 6652 | 6778 | 6652 | ID=Msa1347010-mRNA-1:cds;Parent=Msa1347010-mRNA-1 |
| tig0009298 | CDS | 6268 | 6537 | 6268 | ID=Msa1347010-mRNA-1:cds;Parent=Msa1347010-mRNA-1 |
| tig0009298 | three_prime_UTR | 6146 | 6267 | 6146 | ID=Msa1347010-mRNA-1:three_prime_utr;Parent=Msa1347010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
