AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1368210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1368210 MtrunA17_Chr4g0037871 98.765 162 2 0 1 162 1 162 1.10e-118 332
Msa1368210 MtrunA17_Chr4g0060281 95.238 168 2 1 1 162 1 168 6.91e-116 325
Msa1368210 MtrunA17_Chr1g0149411 42.991 107 58 2 50 156 48 151 1.86e-22 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1368210 AT3G07860.1 63.804 163 56 1 3 162 2 164 6.31e-64 194
Msa1368210 AT3G07860.3 63.804 163 56 1 3 162 2 164 6.31e-64 194
Msa1368210 AT3G07860.2 60.563 142 53 1 3 141 2 143 6.39e-50 157
Msa1368210 AT5G25340.1 36.792 106 60 2 50 150 19 122 1.30e-18 79.3
Msa1368210 AT4G32270.1 32.222 90 59 1 49 138 37 124 7.53e-17 75.1
Msa1368210 AT1G80060.1 31.193 109 63 3 50 150 53 157 8.62e-13 64.3
Msa1368210 AT1G80060.4 31.193 109 63 3 50 150 53 157 8.62e-13 64.3
Msa1368210 AT1G80060.5 31.193 109 63 3 50 150 53 157 8.62e-13 64.3
Msa1368210 AT1G80060.3 31.193 109 63 3 50 150 53 157 8.62e-13 64.3

Find 54 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGACGTGCTTCAAAATT+TGG 0.116379 tig0018625:-37578 Msa1368210:CDS
AGCAAATTTGCGTTTGAATT+TGG 0.188144 tig0018625:-38085 Msa1368210:five_prime_UTR
ATCTTCAAGCGTTGGATTCT+TGG 0.226667 tig0018625:+37954 None:intergenic
AACTCTCATTGGACTTGAAT+TGG 0.259182 tig0018625:-37926 Msa1368210:CDS
AAGCTTTGTTGTTGCATATT+GGG 0.279926 tig0018625:+36325 None:intergenic
GAAGCTTTGTTGTTGCATAT+TGG 0.288095 tig0018625:+36324 None:intergenic
TTACATGGAACAATCTAGTA+TGG 0.294231 tig0018625:-37791 Msa1368210:CDS
GAAGGTGTTGAAAGCATTAT+TGG 0.319812 tig0018625:-38001 Msa1368210:CDS
AACATTTCCTAGCATATAAC+TGG 0.337716 tig0018625:-36266 Msa1368210:three_prime_UTR
TGGGGCATCGTCACATTTCT+TGG 0.338798 tig0018625:-37771 Msa1368210:intron
ACCTTTCAGTGCTGTTGATC+AGG 0.345129 tig0018625:+36413 None:intergenic
TAGACATTAGGTGTAGTTAA+AGG 0.345533 tig0018625:+36082 None:intergenic
TTAATTACAGGAGGAGTGTT+TGG 0.352815 tig0018625:-37645 Msa1368210:intron
TGATGTGATTCTTATGAATA+CGG 0.365027 tig0018625:-37857 Msa1368210:CDS
GCATGTTTGGTGATCTCTAT+TGG 0.368562 tig0018625:-36373 Msa1368210:three_prime_UTR
TCACAATTAAAATAGACATT+AGG 0.375411 tig0018625:+36070 None:intergenic
AATCTAGAAGACACTCAAAA+AGG 0.379366 tig0018625:-36473 Msa1368210:CDS
CTCGTGGCATGTGGCATGTT+TGG 0.406547 tig0018625:-36386 Msa1368210:three_prime_UTR
TCTTCAAGCGTTGGATTCTT+GGG 0.407150 tig0018625:+37955 None:intergenic
TAATTACAGGAGGAGTGTTT+GGG 0.410370 tig0018625:-37644 Msa1368210:intron
GAAGCACGTCATCATCGTTA+AGG 0.413624 tig0018625:+37587 None:intergenic
GATGACGTGCTTCAAAATTT+GGG 0.417532 tig0018625:-37577 Msa1368210:CDS
ACTCTCATTGGACTTGAATT+GGG 0.418691 tig0018625:-37925 Msa1368210:CDS
TTGGGTACATCTGCAAGTAT+TGG 0.422385 tig0018625:+37973 None:intergenic
GTTTGGTGATCTCTATTGGT+CGG 0.444866 tig0018625:-36369 Msa1368210:three_prime_UTR
TTTGGTGATCTCTATTGGTC+GGG 0.476651 tig0018625:-36368 Msa1368210:three_prime_UTR
GGGCGTTCGAAATAATTCTC+AGG 0.483534 tig0018625:-37557 Msa1368210:intron
AATTGAGTCTACTGACAGAT+AGG 0.487885 tig0018625:-36155 Msa1368210:three_prime_UTR
ATACAAGAGCGGTTTGAAGA+AGG 0.490103 tig0018625:-38025 Msa1368210:CDS
GTTTCCACATCTTCAAGCGT+TGG 0.516833 tig0018625:+37946 None:intergenic
GAAGATGTGGAAACTCTCAT+TGG 0.517568 tig0018625:-37937 Msa1368210:CDS
GAATCCAACGCTTGAAGATG+TGG 0.524645 tig0018625:-37950 Msa1368210:CDS
CAAGAAGAAAGTTAATTACA+TGG 0.532345 tig0018625:-37806 Msa1368210:CDS
TATGAATACGGCAACTCTCA+AGG 0.534810 tig0018625:-37845 Msa1368210:CDS
ACAAGTTGAAACAAGAAAGA+AGG 0.541628 tig0018625:+36299 None:intergenic
TCCTGATCAACAGCACTGAA+AGG 0.542251 tig0018625:-36414 Msa1368210:exon
TACATGGAACAATCTAGTAT+GGG 0.546371 tig0018625:-37790 Msa1368210:CDS
ACATGTTCGGACAGAAATGA+TGG 0.547678 tig0018625:+36229 None:intergenic
CTGTCCGAACATGTAATGCA+TGG 0.558696 tig0018625:-36220 Msa1368210:three_prime_UTR
AGCTTATCCAGTTATATGCT+AGG 0.560635 tig0018625:+36259 None:intergenic
TTGATCAGGAAAGCTTACTA+AGG 0.570576 tig0018625:+36427 None:intergenic
AGATGAGATGGGAGAAGGTG+CGG 0.572900 tig0018625:-38049 Msa1368210:exon
GGTGTTGAAAGCATTATTGG+AGG 0.583098 tig0018625:-37998 Msa1368210:CDS
AGCTTTGTTGTTGCATATTG+GGG 0.583951 tig0018625:+36326 None:intergenic
TATTGTGCGATGAGATGAGA+TGG 0.596335 tig0018625:-38061 Msa1368210:exon
ATAACAATAACAAAAGTGCT+AGG 0.604884 tig0018625:+35973 None:intergenic
GCACTGAAAGGTTGAGCTCG+TGG 0.613402 tig0018625:-36402 Msa1368210:three_prime_UTR
AGTTAAAGGCATTTCAACCA+AGG 0.627736 tig0018625:+36096 None:intergenic
ATTGTGCGATGAGATGAGAT+GGG 0.633649 tig0018625:-38060 Msa1368210:exon
CGATGAGATGAGATGGGAGA+AGG 0.633936 tig0018625:-38054 Msa1368210:exon
ACATGGAACAATCTAGTATG+GGG 0.649258 tig0018625:-37789 Msa1368210:CDS
GAGCGGTTTGAAGAAGGCGA+AGG 0.652966 tig0018625:-38019 Msa1368210:CDS
AAGGTTGAGCTCGTGGCATG+TGG 0.667493 tig0018625:-36395 Msa1368210:three_prime_UTR
GAAGGTGCGGAATACAAGAG+CGG 0.727904 tig0018625:-38036 Msa1368210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAATAAATTACTAGTATT+TGG - tig0018625:36571-36590 Msa1368210:intron 15.0%
!! TTAATATTATTAGGAAAAAC+TGG + tig0018625:37415-37434 None:intergenic 15.0%
!! TAGAATAAATTACTAGTATT+TGG - tig0018625:36571-36590 Msa1368210:intron 15.0%
!! TTAATATTATTAGGAAAAAC+TGG + tig0018625:37415-37434 None:intergenic 15.0%
!!! ATCTGATTGATTTTAATTAC+AGG - tig0018625:36404-36423 Msa1368210:three_prime_UTR 20.0%
!!! AAGATATGATTTTGCTAATA+CGG + tig0018625:36660-36679 None:intergenic 20.0%
!!! AGAATTTGAAATTTTGTAGT+TGG + tig0018625:36704-36723 None:intergenic 20.0%
!! ACTACAAAATTTCAAATTCT+TGG - tig0018625:36704-36723 Msa1368210:intron 20.0%
!! TCACAATTAAAATAGACATT+AGG + tig0018625:37994-38013 None:intergenic 20.0%
!!! ATTTTAATTGTGAACTTTTC+TGG - tig0018625:38001-38020 Msa1368210:CDS 20.0%
!!! ATCTGATTGATTTTAATTAC+AGG - tig0018625:36404-36423 Msa1368210:three_prime_UTR 20.0%
!!! AAGATATGATTTTGCTAATA+CGG + tig0018625:36660-36679 None:intergenic 20.0%
!!! AGAATTTGAAATTTTGTAGT+TGG + tig0018625:36704-36723 None:intergenic 20.0%
!! ACTACAAAATTTCAAATTCT+TGG - tig0018625:36704-36723 Msa1368210:intron 20.0%
!! TCACAATTAAAATAGACATT+AGG + tig0018625:37994-38013 None:intergenic 20.0%
!!! ATTTTAATTGTGAACTTTTC+TGG - tig0018625:38001-38020 Msa1368210:CDS 20.0%
! TGATGTGATTCTTATGAATA+CGG - tig0018625:36204-36223 Msa1368210:three_prime_UTR 25.0%
! CAAGAAGAAAGTTAATTACA+TGG - tig0018625:36255-36274 Msa1368210:three_prime_UTR 25.0%
!!! TGATTGATTTTAATTACAGG+AGG - tig0018625:36407-36426 Msa1368210:three_prime_UTR 25.0%
! TTATAGGGAAAAAAATTTCC+TGG - tig0018625:36858-36877 Msa1368210:intron 25.0%
! AAAATGCGAAAACTAATCAT+TGG + tig0018625:37219-37238 None:intergenic 25.0%
! TCAATATTATGGTAGCAAAT+AGG - tig0018625:37320-37339 Msa1368210:intron 25.0%
! CAATATTATGGTAGCAAATA+GGG - tig0018625:37321-37340 Msa1368210:intron 25.0%
!! TGTTAATATGATCTACCTTT+TGG - tig0018625:37370-37389 Msa1368210:intron 25.0%
!! TTGAACGATGAATTTTGTAT+TGG - tig0018625:37491-37510 Msa1368210:intron 25.0%
!! TGAACGATGAATTTTGTATT+GGG - tig0018625:37492-37511 Msa1368210:intron 25.0%
!!! ATAACAATAACAAAAGTGCT+AGG + tig0018625:38091-38110 None:intergenic 25.0%
!!! CACTTTTGTTATTGTTATGT+TGG - tig0018625:38093-38112 Msa1368210:five_prime_UTR 25.0%
! TGATGTGATTCTTATGAATA+CGG - tig0018625:36204-36223 Msa1368210:three_prime_UTR 25.0%
! CAAGAAGAAAGTTAATTACA+TGG - tig0018625:36255-36274 Msa1368210:three_prime_UTR 25.0%
!!! TGATTGATTTTAATTACAGG+AGG - tig0018625:36407-36426 Msa1368210:three_prime_UTR 25.0%
! TTATAGGGAAAAAAATTTCC+TGG - tig0018625:36858-36877 Msa1368210:intron 25.0%
! AAAATGCGAAAACTAATCAT+TGG + tig0018625:37219-37238 None:intergenic 25.0%
! TCAATATTATGGTAGCAAAT+AGG - tig0018625:37320-37339 Msa1368210:intron 25.0%
! CAATATTATGGTAGCAAATA+GGG - tig0018625:37321-37340 Msa1368210:intron 25.0%
!! TGTTAATATGATCTACCTTT+TGG - tig0018625:37370-37389 Msa1368210:intron 25.0%
!! TTGAACGATGAATTTTGTAT+TGG - tig0018625:37491-37510 Msa1368210:intron 25.0%
!! TGAACGATGAATTTTGTATT+GGG - tig0018625:37492-37511 Msa1368210:intron 25.0%
!!! ATAACAATAACAAAAGTGCT+AGG + tig0018625:38091-38110 None:intergenic 25.0%
!!! CACTTTTGTTATTGTTATGT+TGG - tig0018625:38093-38112 Msa1368210:five_prime_UTR 25.0%
AGCAAATTTGCGTTTGAATT+TGG - tig0018625:35976-35995 Msa1368210:three_prime_UTR 30.0%
!!! GCGAATTTCTGTTTTGAAAT+TGG - tig0018625:36168-36187 Msa1368210:three_prime_UTR 30.0%
TTACATGGAACAATCTAGTA+TGG - tig0018625:36270-36289 Msa1368210:three_prime_UTR 30.0%
TACATGGAACAATCTAGTAT+GGG - tig0018625:36271-36290 Msa1368210:three_prime_UTR 30.0%
! TTCAATGTGTTGCTAATCAA+TGG + tig0018625:36351-36370 None:intergenic 30.0%
TATCTATTCTAAGTCATTGC+TGG - tig0018625:36538-36557 Msa1368210:intron 30.0%
ATCTATTCTAAGTCATTGCT+GGG - tig0018625:36539-36558 Msa1368210:intron 30.0%
! TGAAATTTTGTAGTTGGCAA+TGG + tig0018625:36698-36717 None:intergenic 30.0%
TTGCTTATATTGCATTACGT+TGG + tig0018625:36733-36752 None:intergenic 30.0%
TTGAACACACATGCATTATA+GGG - tig0018625:36843-36862 Msa1368210:intron 30.0%
! GTGAATTGTTTCTTCATTAG+TGG - tig0018625:36896-36915 Msa1368210:intron 30.0%
TATGTAGAATAACCTGTAGT+AGG + tig0018625:36985-37004 None:intergenic 30.0%
TCATAAAGTGAGGGTTTATA+GGG + tig0018625:37031-37050 None:intergenic 30.0%
ATCATAAAGTGAGGGTTTAT+AGG + tig0018625:37032-37051 None:intergenic 30.0%
ACTCGTCTCATCATAAAAAA+TGG - tig0018625:37168-37187 Msa1368210:intron 30.0%
TACCATAATATTGACGTTTG+TGG + tig0018625:37314-37333 None:intergenic 30.0%
! ATTCTTTTGTCATGACATAG+GGG + tig0018625:37571-37590 None:intergenic 30.0%
! GATTCTTTTGTCATGACATA+GGG + tig0018625:37572-37591 None:intergenic 30.0%
! AGATTCTTTTGTCATGACAT+AGG + tig0018625:37573-37592 None:intergenic 30.0%
AATCTAGAAGACACTCAAAA+AGG - tig0018625:37588-37607 Msa1368210:CDS 30.0%
!! AAGCTTTGTTGTTGCATATT+GGG + tig0018625:37739-37758 None:intergenic 30.0%
! ACAAGTTGAAACAAGAAAGA+AGG + tig0018625:37765-37784 None:intergenic 30.0%
AACATTTCCTAGCATATAAC+TGG - tig0018625:37795-37814 Msa1368210:CDS 30.0%
! TTTTCCATGCATTACATGTT+CGG + tig0018625:37848-37867 None:intergenic 30.0%
TAGACATTAGGTGTAGTTAA+AGG + tig0018625:37982-38001 None:intergenic 30.0%
!! TTTGTTATTGTTATGTTGGC+TGG - tig0018625:38097-38116 Msa1368210:five_prime_UTR 30.0%
AGCAAATTTGCGTTTGAATT+TGG - tig0018625:35976-35995 Msa1368210:three_prime_UTR 30.0%
!!! GCGAATTTCTGTTTTGAAAT+TGG - tig0018625:36168-36187 Msa1368210:three_prime_UTR 30.0%
TTACATGGAACAATCTAGTA+TGG - tig0018625:36270-36289 Msa1368210:three_prime_UTR 30.0%
TACATGGAACAATCTAGTAT+GGG - tig0018625:36271-36290 Msa1368210:three_prime_UTR 30.0%
! TTCAATGTGTTGCTAATCAA+TGG + tig0018625:36351-36370 None:intergenic 30.0%
TATCTATTCTAAGTCATTGC+TGG - tig0018625:36538-36557 Msa1368210:intron 30.0%
ATCTATTCTAAGTCATTGCT+GGG - tig0018625:36539-36558 Msa1368210:intron 30.0%
! TGAAATTTTGTAGTTGGCAA+TGG + tig0018625:36698-36717 None:intergenic 30.0%
TTGCTTATATTGCATTACGT+TGG + tig0018625:36733-36752 None:intergenic 30.0%
TTGAACACACATGCATTATA+GGG - tig0018625:36843-36862 Msa1368210:intron 30.0%
! GTGAATTGTTTCTTCATTAG+TGG - tig0018625:36896-36915 Msa1368210:intron 30.0%
TATGTAGAATAACCTGTAGT+AGG + tig0018625:36985-37004 None:intergenic 30.0%
TCATAAAGTGAGGGTTTATA+GGG + tig0018625:37031-37050 None:intergenic 30.0%
ATCATAAAGTGAGGGTTTAT+AGG + tig0018625:37032-37051 None:intergenic 30.0%
ACTCGTCTCATCATAAAAAA+TGG - tig0018625:37168-37187 Msa1368210:intron 30.0%
TACCATAATATTGACGTTTG+TGG + tig0018625:37314-37333 None:intergenic 30.0%
! ATTCTTTTGTCATGACATAG+GGG + tig0018625:37571-37590 None:intergenic 30.0%
! GATTCTTTTGTCATGACATA+GGG + tig0018625:37572-37591 None:intergenic 30.0%
! AGATTCTTTTGTCATGACAT+AGG + tig0018625:37573-37592 None:intergenic 30.0%
AATCTAGAAGACACTCAAAA+AGG - tig0018625:37588-37607 Msa1368210:CDS 30.0%
!! AAGCTTTGTTGTTGCATATT+GGG + tig0018625:37739-37758 None:intergenic 30.0%
! ACAAGTTGAAACAAGAAAGA+AGG + tig0018625:37765-37784 None:intergenic 30.0%
AACATTTCCTAGCATATAAC+TGG - tig0018625:37795-37814 Msa1368210:CDS 30.0%
! TTTTCCATGCATTACATGTT+CGG + tig0018625:37848-37867 None:intergenic 30.0%
TAGACATTAGGTGTAGTTAA+AGG + tig0018625:37982-38001 None:intergenic 30.0%
!! GAAGGTGTTGAAAGCATTAT+TGG - tig0018625:36060-36079 Msa1368210:three_prime_UTR 35.0%
AACTCTCATTGGACTTGAAT+TGG - tig0018625:36135-36154 Msa1368210:three_prime_UTR 35.0%
ACTCTCATTGGACTTGAATT+GGG - tig0018625:36136-36155 Msa1368210:three_prime_UTR 35.0%
ACATGGAACAATCTAGTATG+GGG - tig0018625:36272-36291 Msa1368210:three_prime_UTR 35.0%
!! TTAATTACAGGAGGAGTGTT+TGG - tig0018625:36416-36435 Msa1368210:exon 35.0%
!! TAATTACAGGAGGAGTGTTT+GGG - tig0018625:36417-36436 Msa1368210:exon 35.0%
! TGATGACGTGCTTCAAAATT+TGG - tig0018625:36483-36502 Msa1368210:CDS 35.0%
GATGACGTGCTTCAAAATTT+GGG - tig0018625:36484-36503 Msa1368210:CDS 35.0%
! TATGATTTTGCTAATACGGC+AGG + tig0018625:36656-36675 None:intergenic 35.0%
!! GTATGAAAATTGATGATGCC+AGG - tig0018625:36764-36783 Msa1368210:intron 35.0%
!! AAAATTGATGATGCCAGGTA+TGG - tig0018625:36769-36788 Msa1368210:intron 35.0%
GTGTCAGTCTAATATTCATC+TGG + tig0018625:36812-36831 None:intergenic 35.0%
CTTGAACACACATGCATTAT+AGG - tig0018625:36842-36861 Msa1368210:intron 35.0%
!! TTTCAAAAGCACTGCATGAT+TGG + tig0018625:36942-36961 None:intergenic 35.0%
! AATCATGCAGTGCTTTTGAA+AGG - tig0018625:36941-36960 Msa1368210:intron 35.0%
ATGCAAATGCAGAATCAGAT+TGG - tig0018625:37004-37023 Msa1368210:intron 35.0%
CATTGCTGATCATAAAGTGA+GGG + tig0018625:37040-37059 None:intergenic 35.0%
TCATTGCTGATCATAAAGTG+AGG + tig0018625:37041-37060 None:intergenic 35.0%
! TGCTTTCATTTTCAGCTCAA+TGG - tig0018625:37077-37096 Msa1368210:intron 35.0%
TGTCTGATCTAATGGAAATC+AGG + tig0018625:37105-37124 None:intergenic 35.0%
TGGAAGTTTGTCTGATCTAA+TGG + tig0018625:37113-37132 None:intergenic 35.0%
! TAGTTTTCGCATTTTCTCGT+TGG - tig0018625:37224-37243 Msa1368210:intron 35.0%
CACCACAAACGTCAATATTA+TGG - tig0018625:37309-37328 Msa1368210:intron 35.0%
AAACTGGTGATTGAGCATAA+CGG + tig0018625:37399-37418 None:intergenic 35.0%
CATCGTTCAACAATTTCAAG+AGG + tig0018625:37481-37500 None:intergenic 35.0%
TACTAAGGCCATGAAAAAAC+CGG + tig0018625:37622-37641 None:intergenic 35.0%
TTGATCAGGAAAGCTTACTA+AGG + tig0018625:37637-37656 None:intergenic 35.0%
!! AGCTTTGTTGTTGCATATTG+GGG + tig0018625:37738-37757 None:intergenic 35.0%
!! GAAGCTTTGTTGTTGCATAT+TGG + tig0018625:37740-37759 None:intergenic 35.0%
AGCTTATCCAGTTATATGCT+AGG + tig0018625:37805-37824 None:intergenic 35.0%
AATTGAGTCTACTGACAGAT+AGG - tig0018625:37906-37925 Msa1368210:CDS 35.0%
!! AGTTAAAGGCATTTCAACCA+AGG + tig0018625:37968-37987 None:intergenic 35.0%
!! GAAGGTGTTGAAAGCATTAT+TGG - tig0018625:36060-36079 Msa1368210:three_prime_UTR 35.0%
AACTCTCATTGGACTTGAAT+TGG - tig0018625:36135-36154 Msa1368210:three_prime_UTR 35.0%
ACTCTCATTGGACTTGAATT+GGG - tig0018625:36136-36155 Msa1368210:three_prime_UTR 35.0%
ACATGGAACAATCTAGTATG+GGG - tig0018625:36272-36291 Msa1368210:three_prime_UTR 35.0%
!! TTAATTACAGGAGGAGTGTT+TGG - tig0018625:36416-36435 Msa1368210:exon 35.0%
!! TAATTACAGGAGGAGTGTTT+GGG - tig0018625:36417-36436 Msa1368210:exon 35.0%
! TGATGACGTGCTTCAAAATT+TGG - tig0018625:36483-36502 Msa1368210:CDS 35.0%
GATGACGTGCTTCAAAATTT+GGG - tig0018625:36484-36503 Msa1368210:CDS 35.0%
! TATGATTTTGCTAATACGGC+AGG + tig0018625:36656-36675 None:intergenic 35.0%
!! GTATGAAAATTGATGATGCC+AGG - tig0018625:36764-36783 Msa1368210:intron 35.0%
!! AAAATTGATGATGCCAGGTA+TGG - tig0018625:36769-36788 Msa1368210:intron 35.0%
GTGTCAGTCTAATATTCATC+TGG + tig0018625:36812-36831 None:intergenic 35.0%
CTTGAACACACATGCATTAT+AGG - tig0018625:36842-36861 Msa1368210:intron 35.0%
!! TTTCAAAAGCACTGCATGAT+TGG + tig0018625:36942-36961 None:intergenic 35.0%
! AATCATGCAGTGCTTTTGAA+AGG - tig0018625:36941-36960 Msa1368210:intron 35.0%
ATGCAAATGCAGAATCAGAT+TGG - tig0018625:37004-37023 Msa1368210:intron 35.0%
CATTGCTGATCATAAAGTGA+GGG + tig0018625:37040-37059 None:intergenic 35.0%
TCATTGCTGATCATAAAGTG+AGG + tig0018625:37041-37060 None:intergenic 35.0%
! TGCTTTCATTTTCAGCTCAA+TGG - tig0018625:37077-37096 Msa1368210:intron 35.0%
TGTCTGATCTAATGGAAATC+AGG + tig0018625:37105-37124 None:intergenic 35.0%
TGGAAGTTTGTCTGATCTAA+TGG + tig0018625:37113-37132 None:intergenic 35.0%
! TAGTTTTCGCATTTTCTCGT+TGG - tig0018625:37224-37243 Msa1368210:intron 35.0%
CACCACAAACGTCAATATTA+TGG - tig0018625:37309-37328 Msa1368210:intron 35.0%
AAACTGGTGATTGAGCATAA+CGG + tig0018625:37399-37418 None:intergenic 35.0%
CATCGTTCAACAATTTCAAG+AGG + tig0018625:37481-37500 None:intergenic 35.0%
TACTAAGGCCATGAAAAAAC+CGG + tig0018625:37622-37641 None:intergenic 35.0%
TTGATCAGGAAAGCTTACTA+AGG + tig0018625:37637-37656 None:intergenic 35.0%
!! AGCTTTGTTGTTGCATATTG+GGG + tig0018625:37738-37757 None:intergenic 35.0%
!! GAAGCTTTGTTGTTGCATAT+TGG + tig0018625:37740-37759 None:intergenic 35.0%
AGCTTATCCAGTTATATGCT+AGG + tig0018625:37805-37824 None:intergenic 35.0%
AATTGAGTCTACTGACAGAT+AGG - tig0018625:37906-37925 Msa1368210:CDS 35.0%
!! AGTTAAAGGCATTTCAACCA+AGG + tig0018625:37968-37987 None:intergenic 35.0%
TATTGTGCGATGAGATGAGA+TGG - tig0018625:36000-36019 Msa1368210:three_prime_UTR 40.0%
ATTGTGCGATGAGATGAGAT+GGG - tig0018625:36001-36020 Msa1368210:three_prime_UTR 40.0%
ATACAAGAGCGGTTTGAAGA+AGG - tig0018625:36036-36055 Msa1368210:three_prime_UTR 40.0%
!! GGTGTTGAAAGCATTATTGG+AGG - tig0018625:36063-36082 Msa1368210:three_prime_UTR 40.0%
TTGGGTACATCTGCAAGTAT+TGG + tig0018625:36091-36110 None:intergenic 40.0%
!! TCTTCAAGCGTTGGATTCTT+GGG + tig0018625:36109-36128 None:intergenic 40.0%
!! ATCTTCAAGCGTTGGATTCT+TGG + tig0018625:36110-36129 None:intergenic 40.0%
GAAGATGTGGAAACTCTCAT+TGG - tig0018625:36124-36143 Msa1368210:three_prime_UTR 40.0%
TATGAATACGGCAACTCTCA+AGG - tig0018625:36216-36235 Msa1368210:three_prime_UTR 40.0%
! AATACGGCAGGCATTTCTTT+TGG + tig0018625:36644-36663 None:intergenic 40.0%
CAGTCTAATATTCATCTGGC+AGG + tig0018625:36808-36827 None:intergenic 40.0%
!! TGCTTTTGAAAGGAAGCTGA+GGG - tig0018625:36951-36970 Msa1368210:intron 40.0%
CAAACTTCCATACTCTCTGA+AGG - tig0018625:37123-37142 Msa1368210:intron 40.0%
TAGAGAACCTTCAGAGAGTA+TGG + tig0018625:37133-37152 None:intergenic 40.0%
AACTAATCATTGGCCAACTC+AGG + tig0018625:37209-37228 None:intergenic 40.0%
! TTTCGCATTTTCTCGTTGGT+AGG - tig0018625:37228-37247 Msa1368210:intron 40.0%
AGTATGCAGAAGAATACTGC+AGG - tig0018625:37276-37295 Msa1368210:intron 40.0%
GGGACAAAATGTATCTGCAT+TGG + tig0018625:37551-37570 None:intergenic 40.0%
! ACTCAAAAAGGAGAAAGCAC+CGG - tig0018625:37600-37619 Msa1368210:CDS 40.0%
!!! AGAAAGCACCGGTTTTTTCA+TGG - tig0018625:37611-37630 Msa1368210:CDS 40.0%
! GCATGTTTGGTGATCTCTAT+TGG - tig0018625:37688-37707 Msa1368210:intron 40.0%
! GTTTGGTGATCTCTATTGGT+CGG - tig0018625:37692-37711 Msa1368210:intron 40.0%
! TTTGGTGATCTCTATTGGTC+GGG - tig0018625:37693-37712 Msa1368210:intron 40.0%
ACATGTTCGGACAGAAATGA+TGG + tig0018625:37835-37854 None:intergenic 40.0%
! AGTCGAGCATATTTTGTCCT+TGG - tig0018625:37948-37967 Msa1368210:CDS 40.0%
TATTGTGCGATGAGATGAGA+TGG - tig0018625:36000-36019 Msa1368210:three_prime_UTR 40.0%
ATTGTGCGATGAGATGAGAT+GGG - tig0018625:36001-36020 Msa1368210:three_prime_UTR 40.0%
ATACAAGAGCGGTTTGAAGA+AGG - tig0018625:36036-36055 Msa1368210:three_prime_UTR 40.0%
!! GGTGTTGAAAGCATTATTGG+AGG - tig0018625:36063-36082 Msa1368210:three_prime_UTR 40.0%
TTGGGTACATCTGCAAGTAT+TGG + tig0018625:36091-36110 None:intergenic 40.0%
!! TCTTCAAGCGTTGGATTCTT+GGG + tig0018625:36109-36128 None:intergenic 40.0%
!! ATCTTCAAGCGTTGGATTCT+TGG + tig0018625:36110-36129 None:intergenic 40.0%
GAAGATGTGGAAACTCTCAT+TGG - tig0018625:36124-36143 Msa1368210:three_prime_UTR 40.0%
TATGAATACGGCAACTCTCA+AGG - tig0018625:36216-36235 Msa1368210:three_prime_UTR 40.0%
! AATACGGCAGGCATTTCTTT+TGG + tig0018625:36644-36663 None:intergenic 40.0%
CAGTCTAATATTCATCTGGC+AGG + tig0018625:36808-36827 None:intergenic 40.0%
!! TGCTTTTGAAAGGAAGCTGA+GGG - tig0018625:36951-36970 Msa1368210:intron 40.0%
CAAACTTCCATACTCTCTGA+AGG - tig0018625:37123-37142 Msa1368210:intron 40.0%
TAGAGAACCTTCAGAGAGTA+TGG + tig0018625:37133-37152 None:intergenic 40.0%
AACTAATCATTGGCCAACTC+AGG + tig0018625:37209-37228 None:intergenic 40.0%
! TTTCGCATTTTCTCGTTGGT+AGG - tig0018625:37228-37247 Msa1368210:intron 40.0%
AGTATGCAGAAGAATACTGC+AGG - tig0018625:37276-37295 Msa1368210:intron 40.0%
GGGACAAAATGTATCTGCAT+TGG + tig0018625:37551-37570 None:intergenic 40.0%
! ACTCAAAAAGGAGAAAGCAC+CGG - tig0018625:37600-37619 Msa1368210:CDS 40.0%
!!! AGAAAGCACCGGTTTTTTCA+TGG - tig0018625:37611-37630 Msa1368210:CDS 40.0%
! GCATGTTTGGTGATCTCTAT+TGG - tig0018625:37688-37707 Msa1368210:intron 40.0%
! GTTTGGTGATCTCTATTGGT+CGG - tig0018625:37692-37711 Msa1368210:intron 40.0%
! TTTGGTGATCTCTATTGGTC+GGG - tig0018625:37693-37712 Msa1368210:intron 40.0%
ACATGTTCGGACAGAAATGA+TGG + tig0018625:37835-37854 None:intergenic 40.0%
! AGTCGAGCATATTTTGTCCT+TGG - tig0018625:37948-37967 Msa1368210:CDS 40.0%
GAATCCAACGCTTGAAGATG+TGG - tig0018625:36111-36130 Msa1368210:three_prime_UTR 45.0%
GTTTCCACATCTTCAAGCGT+TGG + tig0018625:36118-36137 None:intergenic 45.0%
GAAGCACGTCATCATCGTTA+AGG + tig0018625:36477-36496 None:intergenic 45.0%
GGGCGTTCGAAATAATTCTC+AGG - tig0018625:36504-36523 Msa1368210:CDS 45.0%
! TGATGATGCCAGGTATGGAA+CGG - tig0018625:36774-36793 Msa1368210:intron 45.0%
GCATGTGTGTTCAAGCACAA+GGG + tig0018625:36837-36856 None:intergenic 45.0%
TGCATGTGTGTTCAAGCACA+AGG + tig0018625:36838-36857 None:intergenic 45.0%
!! GTGCTTTTGAAAGGAAGCTG+AGG - tig0018625:36950-36969 Msa1368210:intron 45.0%
!! GCTTTTGAAAGGAAGCTGAG+GGG - tig0018625:36952-36971 Msa1368210:intron 45.0%
ATGATGAGACGAGTTCGACT+GGG + tig0018625:37162-37181 None:intergenic 45.0%
TATGATGAGACGAGTTCGAC+TGG + tig0018625:37163-37182 None:intergenic 45.0%
ACTTTGCAAGTCTCCTGAGT+TGG - tig0018625:37193-37212 Msa1368210:intron 45.0%
TGAGCATAACGGCTTCCAAA+AGG + tig0018625:37388-37407 None:intergenic 45.0%
CAACAATTTCAAGAGGCGAG+AGG + tig0018625:37474-37493 None:intergenic 45.0%
! TCCTGATCAACAGCACTGAA+AGG - tig0018625:37647-37666 Msa1368210:intron 45.0%
! ACCTTTCAGTGCTGTTGATC+AGG + tig0018625:37651-37670 None:intergenic 45.0%
CTGTCCGAACATGTAATGCA+TGG - tig0018625:37841-37860 Msa1368210:CDS 45.0%
GAATCCAACGCTTGAAGATG+TGG - tig0018625:36111-36130 Msa1368210:three_prime_UTR 45.0%
GTTTCCACATCTTCAAGCGT+TGG + tig0018625:36118-36137 None:intergenic 45.0%
GAAGCACGTCATCATCGTTA+AGG + tig0018625:36477-36496 None:intergenic 45.0%
GGGCGTTCGAAATAATTCTC+AGG - tig0018625:36504-36523 Msa1368210:CDS 45.0%
! TGATGATGCCAGGTATGGAA+CGG - tig0018625:36774-36793 Msa1368210:intron 45.0%
GCATGTGTGTTCAAGCACAA+GGG + tig0018625:36837-36856 None:intergenic 45.0%
TGCATGTGTGTTCAAGCACA+AGG + tig0018625:36838-36857 None:intergenic 45.0%
!! GTGCTTTTGAAAGGAAGCTG+AGG - tig0018625:36950-36969 Msa1368210:intron 45.0%
!! GCTTTTGAAAGGAAGCTGAG+GGG - tig0018625:36952-36971 Msa1368210:intron 45.0%
ATGATGAGACGAGTTCGACT+GGG + tig0018625:37162-37181 None:intergenic 45.0%
TATGATGAGACGAGTTCGAC+TGG + tig0018625:37163-37182 None:intergenic 45.0%
ACTTTGCAAGTCTCCTGAGT+TGG - tig0018625:37193-37212 Msa1368210:intron 45.0%
TGAGCATAACGGCTTCCAAA+AGG + tig0018625:37388-37407 None:intergenic 45.0%
CAACAATTTCAAGAGGCGAG+AGG + tig0018625:37474-37493 None:intergenic 45.0%
! TCCTGATCAACAGCACTGAA+AGG - tig0018625:37647-37666 Msa1368210:intron 45.0%
! ACCTTTCAGTGCTGTTGATC+AGG + tig0018625:37651-37670 None:intergenic 45.0%
CTGTCCGAACATGTAATGCA+TGG - tig0018625:37841-37860 Msa1368210:CDS 45.0%
!!! TAGATTTTTTTAATATTATT+AGG + tig0018625:37424-37443 None:intergenic 5.0%
!!! TAGATTTTTTTAATATTATT+AGG + tig0018625:37424-37443 None:intergenic 5.0%
CGATGAGATGAGATGGGAGA+AGG - tig0018625:36007-36026 Msa1368210:three_prime_UTR 50.0%
AGATGAGATGGGAGAAGGTG+CGG - tig0018625:36012-36031 Msa1368210:three_prime_UTR 50.0%
! GAAGGTGCGGAATACAAGAG+CGG - tig0018625:36025-36044 Msa1368210:three_prime_UTR 50.0%
!! TGGGGCATCGTCACATTTCT+TGG - tig0018625:36290-36309 Msa1368210:three_prime_UTR 50.0%
CACAGTGCTTCAAGCAAACC+AGG + tig0018625:36879-36898 None:intergenic 50.0%
! TGGCTGCAAGTTCTAGCACT+AGG + tig0018625:36922-36941 None:intergenic 50.0%
!! CGCATTTTCTCGTTGGTAGG+TGG - tig0018625:37231-37250 Msa1368210:intron 50.0%
! TTCTCGTTGGTAGGTGGCAA+TGG - tig0018625:37237-37256 Msa1368210:intron 50.0%
CGATGAGATGAGATGGGAGA+AGG - tig0018625:36007-36026 Msa1368210:three_prime_UTR 50.0%
AGATGAGATGGGAGAAGGTG+CGG - tig0018625:36012-36031 Msa1368210:three_prime_UTR 50.0%
! GAAGGTGCGGAATACAAGAG+CGG - tig0018625:36025-36044 Msa1368210:three_prime_UTR 50.0%
!! TGGGGCATCGTCACATTTCT+TGG - tig0018625:36290-36309 Msa1368210:three_prime_UTR 50.0%
CACAGTGCTTCAAGCAAACC+AGG + tig0018625:36879-36898 None:intergenic 50.0%
! TGGCTGCAAGTTCTAGCACT+AGG + tig0018625:36922-36941 None:intergenic 50.0%
!! CGCATTTTCTCGTTGGTAGG+TGG - tig0018625:37231-37250 Msa1368210:intron 50.0%
! TTCTCGTTGGTAGGTGGCAA+TGG - tig0018625:37237-37256 Msa1368210:intron 50.0%
GAGCGGTTTGAAGAAGGCGA+AGG - tig0018625:36042-36061 Msa1368210:three_prime_UTR 55.0%
AGCAGAGACCGTTCCATACC+TGG + tig0018625:36785-36804 None:intergenic 55.0%
AAAGGAAGCTGAGGGGAGCT+GGG - tig0018625:36959-36978 Msa1368210:intron 55.0%
GCACTGAAAGGTTGAGCTCG+TGG - tig0018625:37659-37678 Msa1368210:intron 55.0%
AAGGTTGAGCTCGTGGCATG+TGG - tig0018625:37666-37685 Msa1368210:intron 55.0%
CTCGTGGCATGTGGCATGTT+TGG - tig0018625:37675-37694 Msa1368210:intron 55.0%
GAGCGGTTTGAAGAAGGCGA+AGG - tig0018625:36042-36061 Msa1368210:three_prime_UTR 55.0%
AGCAGAGACCGTTCCATACC+TGG + tig0018625:36785-36804 None:intergenic 55.0%
AAAGGAAGCTGAGGGGAGCT+GGG - tig0018625:36959-36978 Msa1368210:intron 55.0%
GCACTGAAAGGTTGAGCTCG+TGG - tig0018625:37659-37678 Msa1368210:intron 55.0%
AAGGTTGAGCTCGTGGCATG+TGG - tig0018625:37666-37685 Msa1368210:intron 55.0%
CTCGTGGCATGTGGCATGTT+TGG - tig0018625:37675-37694 Msa1368210:intron 55.0%
GAAAGGAAGCTGAGGGGAGC+TGG - tig0018625:36958-36977 Msa1368210:intron 60.0%
GAAAGGAAGCTGAGGGGAGC+TGG - tig0018625:36958-36977 Msa1368210:intron 60.0%
AGGGGAGCTGGGCCTACTAC+AGG - tig0018625:36970-36989 Msa1368210:intron 65.0%
AGGGGAGCTGGGCCTACTAC+AGG - tig0018625:36970-36989 Msa1368210:intron 65.0%
Chromosome Type Strat End Strand Name
tig0018625 gene 35967 38116 35967 ID=Msa1368210;Name=Msa1368210
tig0018625 mRNA 35967 38116 35967 ID=Msa1368210-mRNA-1;Parent=Msa1368210;Name=Msa1368210-mRNA-1;_AED=0.06;_eAED=0.06;_QI=52|1|1|1|0.5|0.66|3|464|162
tig0018625 exon 35967 36526 35967 ID=Msa1368210-mRNA-1:exon:382;Parent=Msa1368210-mRNA-1
tig0018625 exon 37558 37657 37558 ID=Msa1368210-mRNA-1:exon:381;Parent=Msa1368210-mRNA-1
tig0018625 exon 37772 38116 37772 ID=Msa1368210-mRNA-1:exon:380;Parent=Msa1368210-mRNA-1
tig0018625 five_prime_UTR 38065 38116 38065 ID=Msa1368210-mRNA-1:five_prime_utr;Parent=Msa1368210-mRNA-1
tig0018625 CDS 37772 38064 37772 ID=Msa1368210-mRNA-1:cds;Parent=Msa1368210-mRNA-1
tig0018625 CDS 37558 37657 37558 ID=Msa1368210-mRNA-1:cds;Parent=Msa1368210-mRNA-1
tig0018625 CDS 36431 36526 36431 ID=Msa1368210-mRNA-1:cds;Parent=Msa1368210-mRNA-1
tig0018625 three_prime_UTR 35967 36430 35967 ID=Msa1368210-mRNA-1:three_prime_utr;Parent=Msa1368210-mRNA-1
Gene Sequence

>Msa1368210

ATGGGAGAAGGTGCGGAATACAAGAGCGGTTTGAAGAAGGCGAAGGTGTTGAAAGCATTATTGGAGGATCCAATACTTGCAGATGTACCCAAGAATCCAACGCTTGAAGATGTGGAAACTCTCATTGGACTTGAATTGGGTAGTGCAATGCGAATTTCTGTTTTGAAATTGGATGCAACTTCTTTTGATGTGATTCTTATGAATACGGCAACTCTCAAGGATTTGAAACTTGCTATCAAGAAGAAAGTTAATTACATGGAACAATCTAGTATGGGGCATCGTCACATTTCTTGGAGGAGTGTTTGGGCGAATTATTGTTTGTCATTCGATAACAACAAGCTCCTTAACGATGATGACGTGCTTCAAAATTTGGGCGTTCGAAATAATTCTCAGATACATTTTGTCCCCTATGTCATGACAAAAGAATCTAGAAGACACTCAAAAAGGAGAAAGCACCGGTTTTTTCATGGCCTTAGTAAGCTTTCCTGA

Protein sequence

>Msa1368210

MGEGAEYKSGLKKAKVLKALLEDPILADVPKNPTLEDVETLIGLELGSAMRISVLKLDATSFDVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHISWRSVWANYCLSFDNNKLLNDDDVLQNLGVRNNSQIHFVPYVMTKESRRHSKRRKHRFFHGLSKLS*