AlfalfaGEDB | Msa1368210

M. sativa cultivar zhongmu-4 / Msa1368210

KEGG: K13153
GO: -
PFAM: PF18036.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368210	XP_003607204.1	98.765	162	2	0	1	162	1	162	1.20e-114	332

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368210	sp\|Q84WS8\|U1125_ARATH	63.804	163	56	1	3	162	2	164	6.21e-63	194

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368210	G7JNF9	98.765	162	2	0	1	162	1	162	5.71e-115	332

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004540	Msa1368210	0.801916	7.183583e-49	-8.615850e-47
Msa0006290	Msa1368210	0.802306	5.971233e-49	-8.615850e-47
Msa0008090	Msa1368210	0.821344	4.245155e-53	-8.615850e-47
Msa0008410	Msa1368210	0.838743	2.398524e-57	-8.615850e-47
Msa0027580	Msa1368210	0.811855	5.682106e-51	-8.615850e-47
Msa0032260	Msa1368210	0.817592	3.043946e-52	-8.615850e-47
Msa0047980	Msa1368210	0.805207	1.491965e-49	-8.615850e-47
Msa0051170	Msa1368210	0.803534	3.329688e-49	-8.615850e-47
Msa0057140	Msa1368210	0.809393	1.935107e-50	-8.615850e-47
Msa0064350	Msa1368210	0.820972	5.170343e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368210	MtrunA17_Chr4g0037871	98.765	162	2	0	1	162	1	162	1.10e-118	332
Msa1368210	MtrunA17_Chr4g0060281	95.238	168	2	1	1	162	1	168	6.91e-116	325
Msa1368210	MtrunA17_Chr1g0149411	42.991	107	58	2	50	156	48	151	1.86e-22	90.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368210	AT3G07860.1	63.804	163	56	1	3	162	2	164	6.31e-64	194
Msa1368210	AT3G07860.3	63.804	163	56	1	3	162	2	164	6.31e-64	194
Msa1368210	AT3G07860.2	60.563	142	53	1	3	141	2	143	6.39e-50	157
Msa1368210	AT5G25340.1	36.792	106	60	2	50	150	19	122	1.30e-18	79.3
Msa1368210	AT4G32270.1	32.222	90	59	1	49	138	37	124	7.53e-17	75.1
Msa1368210	AT1G80060.1	31.193	109	63	3	50	150	53	157	8.62e-13	64.3
Msa1368210	AT1G80060.4	31.193	109	63	3	50	150	53	157	8.62e-13	64.3
Msa1368210	AT1G80060.5	31.193	109	63	3	50	150	53	157	8.62e-13	64.3
Msa1368210	AT1G80060.3	31.193	109	63	3	50	150	53	157	8.62e-13	64.3

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Find 54 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTTCCTAGCATATAAC+TGG	0.337716	tig0018625:-36266	Msa1368210:three_prime_UTR
AACTCTCATTGGACTTGAAT+TGG	0.259182	tig0018625:-37926	Msa1368210:CDS
AAGCTTTGTTGTTGCATATT+GGG	0.279926	tig0018625:+36325	None:intergenic
AAGGTTGAGCTCGTGGCATG+TGG	0.667493	tig0018625:-36395	Msa1368210:three_prime_UTR
AATCTAGAAGACACTCAAAA+AGG	0.379366	tig0018625:-36473	Msa1368210:CDS
AATTGAGTCTACTGACAGAT+AGG	0.487885	tig0018625:-36155	Msa1368210:three_prime_UTR
ACAAGTTGAAACAAGAAAGA+AGG	0.541628	tig0018625:+36299	None:intergenic
ACATGGAACAATCTAGTATG+GGG	0.649258	tig0018625:-37789	Msa1368210:CDS
ACATGTTCGGACAGAAATGA+TGG	0.547678	tig0018625:+36229	None:intergenic
ACCTTTCAGTGCTGTTGATC+AGG	0.345129	tig0018625:+36413	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCAAATTTGCGTTTGAATT+TGG	-	tig0018625:35976-35995	Msa1368210:three_prime_UTR	30.0%
TTACATGGAACAATCTAGTA+TGG	-	tig0018625:36270-36289	Msa1368210:three_prime_UTR	30.0%
TACATGGAACAATCTAGTAT+GGG	-	tig0018625:36271-36290	Msa1368210:three_prime_UTR	30.0%
TATCTATTCTAAGTCATTGC+TGG	-	tig0018625:36538-36557	Msa1368210:intron	30.0%
ATCTATTCTAAGTCATTGCT+GGG	-	tig0018625:36539-36558	Msa1368210:intron	30.0%
TTGCTTATATTGCATTACGT+TGG	+	tig0018625:36733-36752	None:intergenic	30.0%
TTGAACACACATGCATTATA+GGG	-	tig0018625:36843-36862	Msa1368210:intron	30.0%
TATGTAGAATAACCTGTAGT+AGG	+	tig0018625:36985-37004	None:intergenic	30.0%
TCATAAAGTGAGGGTTTATA+GGG	+	tig0018625:37031-37050	None:intergenic	30.0%
ATCATAAAGTGAGGGTTTAT+AGG	+	tig0018625:37032-37051	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018625	gene	35967	38116	35967	ID=Msa1368210;Name=Msa1368210
tig0018625	mRNA	35967	38116	35967	ID=Msa1368210-mRNA-1;Parent=Msa1368210;Name=Msa1368210-mRNA-1;_AED=0.06;_eAED=0.06;_QI=52\|1\|1\|1\|0.5\|0.66\|3\|464\|162
tig0018625	exon	35967	36526	35967	ID=Msa1368210-mRNA-1:exon:382;Parent=Msa1368210-mRNA-1
tig0018625	exon	37558	37657	37558	ID=Msa1368210-mRNA-1:exon:381;Parent=Msa1368210-mRNA-1
tig0018625	exon	37772	38116	37772	ID=Msa1368210-mRNA-1:exon:380;Parent=Msa1368210-mRNA-1
tig0018625	five_prime_UTR	38065	38116	38065	ID=Msa1368210-mRNA-1:five_prime_utr;Parent=Msa1368210-mRNA-1
tig0018625	CDS	37772	38064	37772	ID=Msa1368210-mRNA-1:cds;Parent=Msa1368210-mRNA-1
tig0018625	CDS	37558	37657	37558	ID=Msa1368210-mRNA-1:cds;Parent=Msa1368210-mRNA-1
tig0018625	CDS	36431	36526	36431	ID=Msa1368210-mRNA-1:cds;Parent=Msa1368210-mRNA-1
tig0018625	three_prime_UTR	35967	36430	35967	ID=Msa1368210-mRNA-1:three_prime_utr;Parent=Msa1368210-mRNA-1

Gene Sequence

>Msa1368210

ATGGGAGAAGGTGCGGAATACAAGAGCGGTTTGAAGAAGGCGAAGGTGTTGAAAGCATTATTGGAGGATCCAATACTTGCAGATGTACCCAAGAATCCAACGCTTGAAGATGTGGAAACTCTCATTGGACTTGAATTGGGTAGTGCAATGCGAATTTCTGTTTTGAAATTGGATGCAACTTCTTTTGATGTGATTCTTATGAATACGGCAACTCTCAAGGATTTGAAACTTGCTATCAAGAAGAAAGTTAATTACATGGAACAATCTAGTATGGGGCATCGTCACATTTCTTGGAGGAGTGTTTGGGCGAATTATTGTTTGTCATTCGATAACAACAAGCTCCTTAACGATGATGACGTGCTTCAAAATTTGGGCGTTCGAAATAATTCTCAGATACATTTTGTCCCCTATGTCATGACAAAAGAATCTAGAAGACACTCAAAAAGGAGAAAGCACCGGTTTTTTCATGGCCTTAGTAAGCTTTCCTGA

Protein sequence

>Msa1368210

MGEGAEYKSGLKKAKVLKALLEDPILADVPKNPTLEDVETLIGLELGSAMRISVLKLDATSFDVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHISWRSVWANYCLSFDNNKLLNDDDVLQNLGVRNNSQIHFVPYVMTKESRRHSKRRKHRFFHGLSKLS*