AlfalfaGEDB | Msa0871780

M. sativa cultivar zhongmu-4 / Msa0871780

KEGG: K17675
GO: GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
PFAM: PF00271.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871780	XP_013450961.2	79.032	124	26	0	1	124	1	124	1.99e-52	207
Msa0871780	XP_013450961.2	96.657	658	19	2	98	752	170	827	0.0	1319

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871780	sp\|F4KFV7\|SUV3L_ARATH	70.709	635	169	3	115	749	158	775	0.0	972

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871780	A0A396H9S3	79.032	124	26	0	1	124	1	124	9.52e-53	207
Msa0871780	A0A396H9S3	96.657	658	19	2	98	752	170	827	0.0	1319

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026660	Msa0871780	0.815748	7.886212e-52	-8.615850e-47
Msa0027580	Msa0871780	0.845865	3.110854e-59	-8.615850e-47
Msa0029260	Msa0871780	0.810125	1.346186e-50	-8.615850e-47
Msa0033880	Msa0871780	0.811843	5.716017e-51	-8.615850e-47
Msa0065010	Msa0871780	0.822761	1.992555e-53	-8.615850e-47
Msa0068020	Msa0871780	0.802830	4.657661e-49	-8.615850e-47
Msa0075340	Msa0871780	0.847514	1.101948e-59	-8.615850e-47
Msa0076780	Msa0871780	0.826696	2.354872e-54	-8.615850e-47
Msa0087670	Msa0871780	0.810253	1.263449e-50	-8.615850e-47
Msa0126840	Msa0871780	0.827992	1.151491e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871780	MtrunA17_Chr6g0453111	96.657	658	19	2	98	752	170	827	0.0	1319
Msa0871780	MtrunA17_Chr6g0453111	79.032	124	26	0	1	124	1	124	1.83e-56	207
Msa0871780	MtrunA17_Chr5g0394741	42.886	492	274	5	214	701	62	550	4.70e-137	416
Msa0871780	MtrunA17_Chr3g0081811	53.846	104	18	1	253	356	1	74	3.05e-26	102
Msa0871780	MtrunA17_Chr3g0081761	64.789	71	15	1	327	387	22	92	7.17e-20	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871780	AT5G39840.1	70.709	635	169	3	115	749	158	775	0.0	972
Msa0871780	AT4G14790.1	44.699	481	260	4	214	691	72	549	9.67e-140	423
Msa0871780	AT4G14790.2	44.699	481	260	4	214	691	72	549	9.67e-140	423

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Find 169 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAACTCAACAAATAT+AGG	0.370786	6_1:+6939508	None:intergenic
AAAGAAGCTAGTTTAGATAC+CGG	0.543987	6_1:-6940045	Msa0871780:CDS
AAAGTAGTGGCGAGTCCATC+GGG	0.475445	6_1:+6938569	None:intergenic
AAAGTTGACTAGAGATGAGG+TGG	0.649441	6_1:-6939731	Msa0871780:CDS
AAATATCTCTCTCCTCGAGA+AGG	0.576575	6_1:+6938877	None:intergenic
AAATCACCCTTCGAATGTTA+AGG	0.371191	6_1:+6938693	None:intergenic
AAATCTCTAATATGTTAGAG+AGG	0.629524	6_1:-6938337	Msa0871780:CDS
AAATCTGAGTAAGTGGTACA+TGG	0.594080	6_1:+6938244	None:intergenic
AACCTTCGTCACATGATCAA+AGG	0.545465	6_1:+6938502	None:intergenic
AACTCCTAGACCTTGAGAGT+AGG	0.660909	6_1:-6938145	Msa0871780:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTCAACTTCTCAATTTCA+TGG	-	chr6_1:6935536-6935555	Msa0871780:three_prime_UTR	30.0%
TTATCATATGGGTCGAAAAA+TGG	+	chr6_1:6935571-6935590	None:intergenic	30.0%
TTCAATCTTTGACACAAACT+AGG	+	chr6_1:6935608-6935627	None:intergenic	30.0%
GAAAATGATGAATTTGAGCT+TGG	-	chr6_1:6935731-6935750	Msa0871780:three_prime_UTR	30.0%
GTTTGTGGTTTATCTGAAAA+TGG	-	chr6_1:6935773-6935792	Msa0871780:intron	30.0%
TTGTGGTTTATCTGAAAATG+GGG	-	chr6_1:6935775-6935794	Msa0871780:intron	30.0%
TCTGTAGAATGTAGTAATAG+CGG	-	chr6_1:6935845-6935864	Msa0871780:intron	30.0%
TGAATTAGAGAATAAGAGTG+AGG	-	chr6_1:6935904-6935923	Msa0871780:intron	30.0%
TGAGCTAAAGAATGTGAAAA+AGG	-	chr6_1:6935976-6935995	Msa0871780:intron	30.0%
TAAGTCTTACCACTATTTGT+AGG	+	chr6_1:6936376-6936395	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	6935434	6940322	6935434	ID=Msa0871780;Name=Msa0871780
chr6_1	mRNA	6935434	6940322	6935434	ID=Msa0871780-mRNA-1;Parent=Msa0871780;Name=Msa0871780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0.66\|0.5\|1\|0.66\|0.5\|4\|362\|752
chr6_1	exon	6935434	6935754	6935434	ID=Msa0871780-mRNA-1:exon:2145;Parent=Msa0871780-mRNA-1
chr6_1	exon	6936467	6936538	6936467	ID=Msa0871780-mRNA-1:exon:2144;Parent=Msa0871780-mRNA-1
chr6_1	exon	6937870	6939770	6937870	ID=Msa0871780-mRNA-1:exon:2143;Parent=Msa0871780-mRNA-1
chr6_1	exon	6939996	6940322	6939996	ID=Msa0871780-mRNA-1:exon:2142;Parent=Msa0871780-mRNA-1
chr6_1	CDS	6939996	6940322	6939996	ID=Msa0871780-mRNA-1:cds;Parent=Msa0871780-mRNA-1
chr6_1	CDS	6937870	6939770	6937870	ID=Msa0871780-mRNA-1:cds;Parent=Msa0871780-mRNA-1
chr6_1	CDS	6936508	6936538	6936508	ID=Msa0871780-mRNA-1:cds;Parent=Msa0871780-mRNA-1
chr6_1	three_prime_UTR	6936467	6936507	6936467	ID=Msa0871780-mRNA-1:three_prime_utr;Parent=Msa0871780-mRNA-1
chr6_1	three_prime_UTR	6935434	6935754	6935434	ID=Msa0871780-mRNA-1:three_prime_utr;Parent=Msa0871780-mRNA-1

Gene Sequence

>Msa0871780

ATGGCTAAAGGTTCAATTTCATCACTTTTCTTCTTATACACACGAAAAAAACGAACCTTTTCAACTCTCAAACCTCTTCTCTTCAATCACACATTGAATTCATCTTCAACTTCTCAATTTCATGGCCATTTTCGCCATTTTTCGACCCATATGATAAAATCTCGTTTTTGTCCTAGTTTGTGTCAAAGATTGAATTTTTATGGCGGTAGAAGCCTGCCCATCAGACCCTTTTCGACAGATGGCGAGGAGGGTGGGAAAGAAGCTAGTTTAGATACCGGAATCGAAAAGGGTGTCGGTGAAAATGATGAATTTGAGCTTGGAAATGAGAATGTGAAAAAGGCTGCAAAGTTGACTAGAGATGAGGTGGAAGTGTTTCAAGATGTGTTTCATCATTTTGCTAAATCAGGTTGGGCTTCAAATCAAGCACTTGCTATGTACATTGGTTTGTCTTTTTATCCGACGGCTGCACACAAGTTTCGGAATTTTTTCATGAAAAGATGTCCTGAGGATGTTGCTAAGTACTTGATTTCGCTTGGACCGTGTGATGAGGCTGTGAAGTTTTTGTTTCCTATATTTGTTGAGTTTTGTTTGGAAACTTTTACTGATGAGATCACGAGGTTTAGGGAGATGGTTAAGTCGGCTGACCTCACGATGCCTCATACGTGGTTTCCTTTTGCAAGGGCGATGAAAAGGAAGATAATTTATCATTGTGGGCCTACAAATAGTGGTAAGACTTATAATGCTTTGCAGAGGTTTATGGAGGCGAAGAAGGGCATTTATTGTAGTCCACTTAGATTGTTGGCTATGGAAGTTTTTGATAAAGTTAATGCGAAGGGTGTTTATTGTAGCCTGTTAACTGGTCAAGAGAAGAAGTATTTACCATTTTCAAATCATGTTGCGTGTACTGTTGAAATGGCTTCGACGCAGGAATTGTATGATGTGGCTATTGTTGATGAAATTCAGATGATGGCAGATCCGTATAGAGGTTATGCATGGACTAGGGCGCTCCTTGGTTTGATGGCTGACGAGATACATTTATGTGGTGATCCTAGTGTTTTGGATATTGTTCGAAAGATCTGTCAGGAAACAGGAGATGAATTGTATGAGCAACATTATGAGAGGTTCAAACCGTTGGTAGTCGAAGCAAAGACCTTGCTTGGAAATCTTGAAAATATTAAGTCTGGGGACTGTGTTGTTGCCTTCTCGAGGAGAGAGATATTTGAGGTTAAATTAGCTATCGAGAAACTCACTAATCATAAATGTTGCGTGATATACGGAGCTTTGCCACCAGAGACTCGTAGGCAGCAAGCTAATTTGTTCAACGACCAAAGTAATGAATATGACGTTCTAGTAGCTAGTGATGCAGTGGGGATGGGCCTTAACCTTAACATTCGAAGGGTGATTTTTAATAACCTTTCAAAGTACAACGGTGACAAAATTCTTCCTGTTCCAGCGTCACAGGTTAAGCAAATTGCGGGAAGAGCTGGTCGAAGAGGATGCGTTTATCCCGATGGACTCGCCACTACTTTGCATTTAGAGGATTTGGATTACTTGATTGAGTGTTTGAAACAGCCCTTTGATCATGTGACGAAGGTTGGTCTTTTTCCTTATTATGAGCAAGTTGAATTGTTCGCCGGACAACTTCCTAACATGACATTCAGCCAGCTTTTAGAAAAATTCGGTGAAAATTGCCGTTTGGATGGATCGTACTTCTTGTGTCGACATGATCATATAAAGAAAATCTCTAATATGTTAGAGAGGATTCCAGGGTTATCTTTAGAAGAACGATTCAACTTCTGTTTTGCTCCTATTAATGTTAGGGACCCAAAAGCCATGTACCACTTACTCAGATTTGCTACAGCGTTTGGTCAGAAGGTTCCCGTCAACATAGCTATGGGCATGCCAAAAGGTTCGGCACGGAATGACTCAGAACTCCTAGACCTTGAGAGTAGGCATCAAGTGTTATCTTCGTATATGTGGTTATCAAACCACTTTGATAAGGAAAAATTTCCATATGCGGAGAAAGCCCAAGCAATGGCTGCGGATATTGCTATCTTACTTGCTCAATCTCTTAGAAAAGCTGATTGGAAACCTGAATCAAGGGGGAGAGGGAAACCAAAAGCTGCAGATAGTGAAGAGCCGCAAACAGAACCAAGAAGTGATACTTTAGAAACTGAAAAGAAGAATCACTATTCAAGACCACAGTCTCTTGTTAAAGTATATGAACAGAAACGGCAAAAAGTGTTGTTTACACTCTGA

Protein sequence

>Msa0871780

MAKGSISSLFFLYTRKKRTFSTLKPLLFNHTLNSSSTSQFHGHFRHFSTHMIKSRFCPSLCQRLNFYGGRSLPIRPFSTDGEEGGKEASLDTGIEKGVGENDEFELGNENVKKAAKLTRDEVEVFQDVFHHFAKSGWASNQALAMYIGLSFYPTAAHKFRNFFMKRCPEDVAKYLISLGPCDEAVKFLFPIFVEFCLETFTDEITRFREMVKSADLTMPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAKGVYCSLLTGQEKKYLPFSNHVACTVEMASTQELYDVAIVDEIQMMADPYRGYAWTRALLGLMADEIHLCGDPSVLDIVRKICQETGDELYEQHYERFKPLVVEAKTLLGNLENIKSGDCVVAFSRREIFEVKLAIEKLTNHKCCVIYGALPPETRRQQANLFNDQSNEYDVLVASDAVGMGLNLNIRRVIFNNLSKYNGDKILPVPASQVKQIAGRAGRRGCVYPDGLATTLHLEDLDYLIECLKQPFDHVTKVGLFPYYEQVELFAGQLPNMTFSQLLEKFGENCRLDGSYFLCRHDHIKKISNMLERIPGLSLEERFNFCFAPINVRDPKAMYHLLRFATAFGQKVPVNIAMGMPKGSARNDSELLDLESRHQVLSSYMWLSNHFDKEKFPYAEKAQAMAADIAILLAQSLRKADWKPESRGRGKPKAADSEEPQTEPRSDTLETEKKNHYSRPQSLVKVYEQKRQKVLFTL*