AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0182280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182280 MtrunA17_Chr1g0209081 95.000 220 7 1 1 220 1 216 6.83e-150 415
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182280 AT1G68185.1 47.085 223 107 6 1 220 1 215 1.05e-49 161
Msa0182280 AT1G68185.3 47.085 223 107 6 1 220 1 215 1.05e-49 161
Msa0182280 AT1G68185.2 47.085 223 107 6 1 220 47 261 7.82e-49 160

Find 70 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGCTGAGATTGACATTT+TGG 0.125187 1_4:-70689172 Msa0182280:three_prime_UTR
ACCCTCATGTTATACAAATT+TGG 0.150209 1_4:+70688779 None:intergenic
AATAATTAATGATTATATTT+TGG 0.153894 1_4:+70688881 None:intergenic
GTATAACATGAGGGTTATTT+AGG 0.223417 1_4:-70688771 Msa0182280:three_prime_UTR
CCTCCTCATCAGTCTTCTTA+TGG 0.228908 1_4:+70691131 None:intergenic
GAATTCTTCTTTCTCTTCTT+AGG 0.234591 1_4:+70691364 None:intergenic
ACCATCGAGGCACACGATAT+TGG 0.263756 1_4:+70691528 None:intergenic
AAAGCAGATTCGGATGTTTA+TGG 0.264643 1_4:-70690445 Msa0182280:intron
ATGTGAAGTCAAGTTGATTT+AGG 0.273644 1_4:-70690027 Msa0182280:intron
CAAATTGTGTTGTCATTTGA+TGG 0.307014 1_4:-70690118 Msa0182280:CDS
GCAGCTGTTGGCCCTCTCTA+AGG 0.327070 1_4:-70688845 Msa0182280:three_prime_UTR
TATCATTATCTTCCATTTCA+AGG 0.332434 1_4:+70690062 None:intergenic
ATGATGTTGTGCATTATGTT+TGG 0.333046 1_4:-70688956 Msa0182280:three_prime_UTR
CAAAATCCAGACAGCGATAA+TGG 0.337536 1_4:-70691689 Msa0182280:exon
AAAATATGTACTGTACAATT+AGG 0.339197 1_4:+70689064 None:intergenic
CACGGAAGGTTGCAATGAAT+TGG 0.349044 1_4:+70690545 None:intergenic
TGCACAACATCATCAATAGA+AGG 0.365604 1_4:+70688966 None:intergenic
CCATCGAGGCACACGATATT+GGG 0.373094 1_4:+70691529 None:intergenic
AGTCTTCTTATGGGCCTTAC+CGG 0.377421 1_4:+70691141 None:intergenic
GTAGAAGTTCTTTCGGTGTA+TGG 0.379855 1_4:-70689014 Msa0182280:three_prime_UTR
CTCCTCATCAGTCTTCTTAT+GGG 0.387413 1_4:+70691132 None:intergenic
AAACAAGGGTTCAAGTTCTT+CGG 0.392297 1_4:+70691570 None:intergenic
AACCCCTGCCAGCCTTGAAA+TGG 0.394451 1_4:-70690074 Msa0182280:CDS
TGATGTTGTGCATTATGTTT+GGG 0.409527 1_4:-70688955 Msa0182280:three_prime_UTR
ATTCAACTTTGAAGAATTTG+AGG 0.439470 1_4:-70691108 Msa0182280:intron
CCCAATATCGTGTGCCTCGA+TGG 0.441844 1_4:-70691529 Msa0182280:intron
AGGGTTATTTAGGATACAAA+TGG 0.446647 1_4:-70688761 Msa0182280:three_prime_UTR
TTTGGGGTTTAGGTTGAGAA+TGG 0.451301 1_4:-70691241 Msa0182280:intron
CTGATGCAGATCTTCGATCA+TGG 0.453261 1_4:-70689192 Msa0182280:intron
TCTTCCATTTCAAGGCTGGC+AGG 0.456162 1_4:+70690070 None:intergenic
AGGATGAAACAAAGCAGATT+CGG 0.459454 1_4:-70690455 Msa0182280:CDS
TTCCATTTCAAGGCTGGCAG+GGG 0.465493 1_4:+70690072 None:intergenic
GCCTTACCGGTGACCCTTGG+TGG 0.466237 1_4:+70691154 None:intergenic
TGGGCCTTACCGGTGACCCT+TGG 0.476360 1_4:+70691151 None:intergenic
CAATTCATTGCAACCTTCCG+TGG 0.476932 1_4:-70690544 Msa0182280:CDS
CCACAACAGCTGCCGTGAAA+AGG 0.484191 1_4:+70688816 None:intergenic
ATTATCTTCCATTTCAAGGC+TGG 0.485099 1_4:+70690066 None:intergenic
GCCACCAAGGGTCACCGGTA+AGG 0.490738 1_4:-70691155 Msa0182280:CDS
CTTCCATTTCAAGGCTGGCA+GGG 0.494291 1_4:+70690071 None:intergenic
TTATTTATGCTAGCAGCTGT+TGG 0.504433 1_4:-70688857 Msa0182280:three_prime_UTR
TTGGGGTTTAGGTTGAGAAT+GGG 0.505216 1_4:-70691240 Msa0182280:intron
GTTCTTTCGGTGTATGGCAT+AGG 0.505606 1_4:-70689008 Msa0182280:three_prime_UTR
AGAATCTTTGCTCGTTCAGA+AGG 0.520871 1_4:+70690495 None:intergenic
TCACCGCCATTATCGCTGTC+TGG 0.521152 1_4:+70691683 None:intergenic
TTTGTATAGATTGAAGAAGC+AGG 0.529052 1_4:-70690640 Msa0182280:intron
TCACTTACGTCGTCCACGGA+AGG 0.541348 1_4:+70690531 None:intergenic
CCGGTGACCCTTGGTGGCGA+AGG 0.548861 1_4:+70691160 None:intergenic
TGTAGGATGACCAGTTTGAA+AGG 0.550107 1_4:-70690183 Msa0182280:intron
AACCAAATTTGTATAACATG+AGG 0.554290 1_4:-70688781 Msa0182280:three_prime_UTR
CCTTCGCCACCAAGGGTCAC+CGG 0.569098 1_4:-70691160 Msa0182280:CDS
TGAGAATGGGAAGAATACTA+AGG 0.569816 1_4:-70691227 Msa0182280:CDS
ACCAAATTTGTATAACATGA+GGG 0.577504 1_4:-70688780 Msa0182280:three_prime_UTR
TTGGTTACCTTCGCCACCAA+GGG 0.579619 1_4:-70691167 Msa0182280:CDS
GCACAACATCATCAATAGAA+GGG 0.585781 1_4:+70688967 None:intergenic
AACGCGACTGTAATCAAACA+AGG 0.602179 1_4:+70691555 None:intergenic
AAAAGGTTACAGCCTTAGAG+AGG 0.611672 1_4:+70688833 None:intergenic
GAATGGGAAGAATACTAAGG+TGG 0.613980 1_4:-70691224 Msa0182280:CDS
TGGACCTCGAGGATGATGAT+TGG 0.623297 1_4:-70691186 Msa0182280:CDS
TCTCATCTCTGTTCAAGACA+AGG 0.626807 1_4:-70690475 Msa0182280:CDS
CCATAAGAAGACTGATGAGG+AGG 0.627181 1_4:-70691131 Msa0182280:CDS
ATTGGTTACCTTCGCCACCA+AGG 0.629138 1_4:-70691168 Msa0182280:CDS
AAAGGTTACAGCCTTAGAGA+GGG 0.685304 1_4:+70688834 None:intergenic
TAAGGTGGAAACAGTGAATG+TGG 0.687527 1_4:-70691209 Msa0182280:CDS
GGCCCATAAGAAGACTGATG+AGG 0.692280 1_4:-70691134 Msa0182280:CDS
AGTGAATGTGGTGGACCTCG+AGG 0.707436 1_4:-70691197 Msa0182280:CDS
GGTGGAAACAGTGAATGTGG+TGG 0.711849 1_4:-70691206 Msa0182280:CDS
AATCCAGACAGCGATAATGG+CGG 0.717060 1_4:-70691686 Msa0182280:intron
TTAAGGAGTGCTAACCATCG+AGG 0.734889 1_4:+70691515 None:intergenic
ACGCGACTGTAATCAAACAA+GGG 0.742183 1_4:+70691556 None:intergenic
GTAACCAATCATCATCCTCG+AGG 0.759157 1_4:+70691182 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTTCAATTTGAATAAT+CGG + chr1_4:70689070-70689089 None:intergenic 10.0%
!! AAACAAAAAATTAAACATTT+GGG + chr1_4:70689097-70689116 None:intergenic 10.0%
!! AAAACAAAAAATTAAACATT+TGG + chr1_4:70689098-70689117 None:intergenic 10.0%
!! AAAACAAAAAAAAACAAATT+TGG + chr1_4:70689247-70689266 None:intergenic 10.0%
!! TACTCAATTTCAAATAATTA+GGG - chr1_4:70688902-70688921 Msa0182280:three_prime_UTR 15.0%
!! AACAAAAAATTAAACATTTG+GGG + chr1_4:70689096-70689115 None:intergenic 15.0%
!!! TGTAAATTTTGATAATGTTT+TGG - chr1_4:70689295-70689314 Msa0182280:intron 15.0%
!!! GTAAATTTTGATAATGTTTT+GGG - chr1_4:70689296-70689315 Msa0182280:intron 15.0%
!!! TAAATTTTGATAATGTTTTG+GGG - chr1_4:70689297-70689316 Msa0182280:intron 15.0%
!! CTGATAAAGAAAATAAAAAA+AGG + chr1_4:70690268-70690287 None:intergenic 15.0%
!!! ATTTTAAAGTAAGAAAACTA+AGG - chr1_4:70690720-70690739 Msa0182280:intron 15.0%
!! AAATTGAAAATATTATCTTC+TGG + chr1_4:70690827-70690846 None:intergenic 15.0%
!!! ATTTTCAATTTTTTCAACAA+TGG - chr1_4:70690836-70690855 Msa0182280:intron 15.0%
!!! CGCTTTTTTTTTTTTTTTGA+AGG + chr1_4:70688792-70688811 None:intergenic 20.0%
!! GTACTCAATTTCAAATAATT+AGG - chr1_4:70688901-70688920 Msa0182280:three_prime_UTR 20.0%
!! ACAAAAAATTAAACATTTGG+GGG + chr1_4:70689095-70689114 None:intergenic 20.0%
!!! GTTTTTTTTTGTTTTGTACA+AGG - chr1_4:70689252-70689271 Msa0182280:intron 20.0%
!! AATGGCAAAAAACAAAAATT+TGG + chr1_4:70689509-70689528 None:intergenic 20.0%
!! TTAAAATAACATGCTCATAA+AGG - chr1_4:70689689-70689708 Msa0182280:intron 20.0%
!! TAAAATAACATGCTCATAAA+GGG - chr1_4:70689690-70689709 Msa0182280:intron 20.0%
!!! TTGTATAAAAAAAGTGTGTT+GGG - chr1_4:70689738-70689757 Msa0182280:intron 20.0%
!! ATGAGTAGAATAACTTATAT+TGG + chr1_4:70689823-70689842 None:intergenic 20.0%
!! TAAAGAAAATAAAAAAAGGC+AGG + chr1_4:70690264-70690283 None:intergenic 20.0%
!!! ATTTTGTTTATAATAGTGAC+CGG + chr1_4:70690993-70691012 None:intergenic 20.0%
!!! ATTTTGCTTATAATAGTTAC+CGG - chr1_4:70691102-70691121 Msa0182280:intron 20.0%
!!! GCTTTTTTATCAATTTTTAC+TGG - chr1_4:70691433-70691452 Msa0182280:intron 20.0%
!! AAAATATGTACTGTACAATT+AGG + chr1_4:70691493-70691512 None:intergenic 20.0%
!! AATTTTACAGCATAGAAAAG+AGG - chr1_4:70688744-70688763 Msa0182280:three_prime_UTR 25.0%
!! ATTTTACAGCATAGAAAAGA+GGG - chr1_4:70688745-70688764 Msa0182280:three_prime_UTR 25.0%
!!! AAGCGAATTAAATTTTGAAG+CGG - chr1_4:70688807-70688826 Msa0182280:three_prime_UTR 25.0%
!! TGAAGATTTGAAATTGAAAG+AGG + chr1_4:70688930-70688949 None:intergenic 25.0%
! TTGAATAATCGGAATAGTTA+AGG + chr1_4:70689059-70689078 None:intergenic 25.0%
!! ATTCAACTTTGAAGAATTTG+AGG - chr1_4:70689446-70689465 Msa0182280:intron 25.0%
! TAAGTAAACAAACAATGCAA+TGG + chr1_4:70689527-70689546 None:intergenic 25.0%
!!! TGTAGCAATGTTTTAAAAAC+CGG + chr1_4:70689655-70689674 None:intergenic 25.0%
!! CTTGTATAAAAAAAGTGTGT+TGG - chr1_4:70689737-70689756 Msa0182280:intron 25.0%
! TAACTAATTAAGCCTATTCT+TGG - chr1_4:70689785-70689804 Msa0182280:intron 25.0%
! ACATCTTATAAGAAACTGTA+TGG + chr1_4:70689888-70689907 None:intergenic 25.0%
! TGTTGATGTTCTTAATATTG+TGG - chr1_4:70690163-70690182 Msa0182280:CDS 25.0%
!!! TAGTTGTAGTTTGTTTGAAA+TGG - chr1_4:70690214-70690233 Msa0182280:intron 25.0%
!! AGTTTGTTTGAAATGGTATA+AGG - chr1_4:70690221-70690240 Msa0182280:intron 25.0%
!! GTTTGTTTGAAATGGTATAA+GGG - chr1_4:70690222-70690241 Msa0182280:intron 25.0%
!!! TTTTGATAATCCTTTCAAAC+TGG + chr1_4:70690384-70690403 None:intergenic 25.0%
! TATCATTATCTTCCATTTCA+AGG + chr1_4:70690495-70690514 None:intergenic 25.0%
! TTGAATACAAATTCATCATC+AGG + chr1_4:70690664-70690683 None:intergenic 25.0%
! TGAATTTGTATTCAAGTGTA+TGG - chr1_4:70690669-70690688 Msa0182280:intron 25.0%
! AATGATGAATGCTCATATTT+AGG - chr1_4:70690882-70690901 Msa0182280:intron 25.0%
! ATGATGAATGCTCATATTTA+GGG - chr1_4:70690883-70690902 Msa0182280:intron 25.0%
! TGTGGTAAATATCATTTGTA+AGG - chr1_4:70690906-70690925 Msa0182280:intron 25.0%
!!! GTCTTCTATATTTTAAGAAC+TGG + chr1_4:70691471-70691490 None:intergenic 25.0%
!!! TTGTACAGTACATATTTTGA+CGG - chr1_4:70691495-70691514 Msa0182280:intron 25.0%
!!! TTTTTAGGTAGAAGTTCTTT+CGG - chr1_4:70691533-70691552 Msa0182280:CDS 25.0%
!! AACTCTATAGAATTTTGTCA+AGG - chr1_4:70691631-70691650 Msa0182280:intron 25.0%
! AACCAAATTTGTATAACATG+AGG - chr1_4:70691773-70691792 Msa0182280:five_prime_UTR 25.0%
! ACCAAATTTGTATAACATGA+GGG - chr1_4:70691774-70691793 Msa0182280:five_prime_UTR 25.0%
! TTTTACAGCATAGAAAAGAG+GGG - chr1_4:70688746-70688765 Msa0182280:three_prime_UTR 30.0%
!!! AGCGAATTAAATTTTGAAGC+GGG - chr1_4:70688808-70688827 Msa0182280:three_prime_UTR 30.0%
GAATTCTTCTTTCTCTTCTT+AGG + chr1_4:70689193-70689212 None:intergenic 30.0%
! TCAACATGTAGTGAGTATTT+TGG - chr1_4:70689219-70689238 Msa0182280:intron 30.0%
!! TTGTTTTGTACAAGGATGTT+TGG - chr1_4:70689260-70689279 Msa0182280:intron 30.0%
!!! TTGATAATGTTTTGGGGTTT+AGG - chr1_4:70689303-70689322 Msa0182280:intron 30.0%
! AACTTTGAAGAATTTGAGGT+TGG - chr1_4:70689450-70689469 Msa0182280:intron 30.0%
TTTGTTTACTTAACACTCCT+AGG - chr1_4:70689535-70689554 Msa0182280:intron 30.0%
!! TTTTCCGATTCGTTTGATTT+CGG + chr1_4:70689626-70689645 None:intergenic 30.0%
!!! GTAGCAATGTTTTAAAAACC+GGG + chr1_4:70689654-70689673 None:intergenic 30.0%
AATTAAGCCTATTCTTGGTT+TGG - chr1_4:70689790-70689809 Msa0182280:intron 30.0%
TAAAGTTCCAAACCAAGAAT+AGG + chr1_4:70689800-70689819 None:intergenic 30.0%
TTTGTATAGATTGAAGAAGC+AGG - chr1_4:70689914-70689933 Msa0182280:intron 30.0%
!! TATTTGTCACTTTATCTAGC+TGG - chr1_4:70690321-70690340 Msa0182280:intron 30.0%
ATCCTACAGAGAATTGAAAA+AGG + chr1_4:70690359-70690378 None:intergenic 30.0%
! CAAATTGTGTTGTCATTTGA+TGG - chr1_4:70690436-70690455 Msa0182280:intron 30.0%
!! ATGTGAAGTCAAGTTGATTT+AGG - chr1_4:70690527-70690546 Msa0182280:CDS 30.0%
!! AGATCCACTTCTATTTCTAA+TGG + chr1_4:70690773-70690792 None:intergenic 30.0%
GGTAAATATCATTTGTAAGG+AGG - chr1_4:70690909-70690928 Msa0182280:intron 30.0%
!! TAGGCATTGTTATGTGATTT+TGG - chr1_4:70691139-70691158 Msa0182280:CDS 30.0%
AGAACAATGCAATAATGCAA+AGG + chr1_4:70691178-70691197 None:intergenic 30.0%
! TGCATTGTTCTTTTTGTCAT+TGG - chr1_4:70691187-70691206 Msa0182280:CDS 30.0%
! CAATTGATTATGCTGTTTGT+TGG - chr1_4:70691274-70691293 Msa0182280:intron 30.0%
ATGATGTTGTGCATTATGTT+TGG - chr1_4:70691598-70691617 Msa0182280:intron 30.0%
TGATGTTGTGCATTATGTTT+GGG - chr1_4:70691599-70691618 Msa0182280:intron 30.0%
ACCCTCATGTTATACAAATT+TGG + chr1_4:70691778-70691797 None:intergenic 30.0%
GTATAACATGAGGGTTATTT+AGG - chr1_4:70691783-70691802 Msa0182280:five_prime_UTR 30.0%
! AGGGTTATTTAGGATACAAA+TGG - chr1_4:70691793-70691812 Msa0182280:five_prime_UTR 30.0%
! AAACAAGGGTTCAAGTTCTT+CGG + chr1_4:70688987-70689006 None:intergenic 35.0%
TGAGAATGGGAAGAATACTA+AGG - chr1_4:70689327-70689346 Msa0182280:intron 35.0%
!! CGGTTTAACTTGTTAAACCT+AGG + chr1_4:70689555-70689574 None:intergenic 35.0%
ACAATGTAGTCTGATTGAAC+TGG + chr1_4:70689601-70689620 None:intergenic 35.0%
GTAACCGAAATCAAACGAAT+CGG - chr1_4:70689619-70689638 Msa0182280:intron 35.0%
!!! TTTTGCTGATTCAGCAAAAG+CGG + chr1_4:70689946-70689965 None:intergenic 35.0%
AGGATGAAACAAAGCAGATT+CGG - chr1_4:70690099-70690118 Msa0182280:CDS 35.0%
AAAGCAGATTCGGATGTTTA+TGG - chr1_4:70690109-70690128 Msa0182280:CDS 35.0%
!!! GGTTGTTTTTATTAGTGCTC+TGG - chr1_4:70690184-70690203 Msa0182280:intron 35.0%
TATCAGAGCTGCATTTCTTT+AGG - chr1_4:70690282-70690301 Msa0182280:intron 35.0%
!!! CTCCTTTTTCAATTCTCTGT+AGG - chr1_4:70690354-70690373 Msa0182280:intron 35.0%
ATTATCTTCCATTTCAAGGC+TGG + chr1_4:70690491-70690510 None:intergenic 35.0%
ATTCAAGTGTATGGAAAGAG+AGG - chr1_4:70690678-70690697 Msa0182280:intron 35.0%
AGCACCATTAGAAATAGAAG+TGG - chr1_4:70690766-70690785 Msa0182280:intron 35.0%
ACATGTTTATTCTTAGCCTC+AGG - chr1_4:70690942-70690961 Msa0182280:intron 35.0%
GAATTATTCATTACTCCCTC+CGG - chr1_4:70690971-70690990 Msa0182280:intron 35.0%
TGTTTATAATAGTGACCGGA+GGG + chr1_4:70690989-70691008 None:intergenic 35.0%
TTGTTTATAATAGTGACCGG+AGG + chr1_4:70690990-70691009 None:intergenic 35.0%
TTGCTTATAATAGTTACCGG+AGG - chr1_4:70691105-70691124 Msa0182280:intron 35.0%
TGCTTATAATAGTTACCGGA+GGG - chr1_4:70691106-70691125 Msa0182280:intron 35.0%
! GCATTGTTATGTGATTTTGG+AGG - chr1_4:70691142-70691161 Msa0182280:CDS 35.0%
! ACTAACATGTGCTGCAATTT+TGG - chr1_4:70691299-70691318 Msa0182280:intron 35.0%
!!! CATATTTTGACGGAATGTCT+TGG - chr1_4:70691505-70691524 Msa0182280:intron 35.0%
!! AATGTCTTGGAGCACTTTTT+AGG - chr1_4:70691518-70691537 Msa0182280:intron 35.0%
GCACAACATCATCAATAGAA+GGG + chr1_4:70691590-70691609 None:intergenic 35.0%
TGCACAACATCATCAATAGA+AGG + chr1_4:70691591-70691610 None:intergenic 35.0%
TTATTTATGCTAGCAGCTGT+TGG - chr1_4:70691697-70691716 Msa0182280:five_prime_UTR 35.0%
!!! CGCTGTCTGGATTTTGATTA+AGG + chr1_4:70688861-70688880 None:intergenic 40.0%
CAAAATCCAGACAGCGATAA+TGG - chr1_4:70688865-70688884 Msa0182280:three_prime_UTR 40.0%
! TGTGTGTTTTTCCCATTTGC+AGG - chr1_4:70688955-70688974 Msa0182280:three_prime_UTR 40.0%
TTCGGTTTCATCCTGCAAAT+GGG + chr1_4:70688969-70688988 None:intergenic 40.0%
ACGCGACTGTAATCAAACAA+GGG + chr1_4:70689001-70689020 None:intergenic 40.0%
AACGCGACTGTAATCAAACA+AGG + chr1_4:70689002-70689021 None:intergenic 40.0%
!! TTTGGGGTTTAGGTTGAGAA+TGG - chr1_4:70689313-70689332 Msa0182280:intron 40.0%
!! TTGGGGTTTAGGTTGAGAAT+GGG - chr1_4:70689314-70689333 Msa0182280:intron 40.0%
GAATGGGAAGAATACTAAGG+TGG - chr1_4:70689330-70689349 Msa0182280:intron 40.0%
TAAGGTGGAAACAGTGAATG+TGG - chr1_4:70689345-70689364 Msa0182280:intron 40.0%
CTCCTCATCAGTCTTCTTAT+GGG + chr1_4:70689425-70689444 None:intergenic 40.0%
GAGTTGAATCAGTTGAATCG+CGG + chr1_4:70689579-70689598 None:intergenic 40.0%
! TTTTTCACTTACGTCGTCCA+CGG + chr1_4:70690030-70690049 None:intergenic 40.0%
AGAATCTTTGCTCGTTCAGA+AGG + chr1_4:70690062-70690081 None:intergenic 40.0%
TCTCATCTCTGTTCAAGACA+AGG - chr1_4:70690079-70690098 Msa0182280:CDS 40.0%
TGTAGGATGACCAGTTTGAA+AGG - chr1_4:70690371-70690390 Msa0182280:intron 40.0%
TATGGAAAGAGAGGATGACA+GGG - chr1_4:70690687-70690706 Msa0182280:intron 40.0%
TAAGGACCTTTCTTTCTCTG+AGG - chr1_4:70690738-70690757 Msa0182280:intron 40.0%
TTACTGCCTCAGAGAAAGAA+AGG + chr1_4:70690747-70690766 None:intergenic 40.0%
! GAATGCTCATATTTAGGGTG+TGG - chr1_4:70690888-70690907 Msa0182280:intron 40.0%
TTATTCTTAGCCTCAGGTAG+AGG - chr1_4:70690948-70690967 Msa0182280:intron 40.0%
TATTCTTAGCCTCAGGTAGA+GGG - chr1_4:70690949-70690968 Msa0182280:intron 40.0%
TGAATAATTCCCTCTACCTG+AGG + chr1_4:70690961-70690980 None:intergenic 40.0%
!! CAGTTCAGAAGTGTCATTTG+TGG - chr1_4:70691220-70691239 Msa0182280:CDS 40.0%
AAATGCTACTAGAGCAGAAG+AGG + chr1_4:70691246-70691265 None:intergenic 40.0%
ATCGAAGATCTGCATCAGAA+AGG + chr1_4:70691360-70691379 None:intergenic 40.0%
! TGGAGCTGAGATTGACATTT+TGG - chr1_4:70691382-70691401 Msa0182280:CDS 40.0%
! GGAGCTGAGATTGACATTTT+GGG - chr1_4:70691383-70691402 Msa0182280:CDS 40.0%
! GAGCTGAGATTGACATTTTG+GGG - chr1_4:70691384-70691403 Msa0182280:CDS 40.0%
!! ACATTTTGGGGACTCGTTTT+TGG - chr1_4:70691396-70691415 Msa0182280:CDS 40.0%
! GTAGAAGTTCTTTCGGTGTA+TGG - chr1_4:70691540-70691559 Msa0182280:CDS 40.0%
AAAGGTTACAGCCTTAGAGA+GGG + chr1_4:70691723-70691742 None:intergenic 40.0%
AAAAGGTTACAGCCTTAGAG+AGG + chr1_4:70691724-70691743 None:intergenic 40.0%
! CTAAGGCTGTAACCTTTTCA+CGG - chr1_4:70691726-70691745 Msa0182280:five_prime_UTR 40.0%
! AATCCAGACAGCGATAATGG+CGG - chr1_4:70688868-70688887 Msa0182280:three_prime_UTR 45.0%
CTTCGGTTTCATCCTGCAAA+TGG + chr1_4:70688970-70688989 None:intergenic 45.0%
!! TTAAGGAGTGCTAACCATCG+AGG + chr1_4:70689042-70689061 None:intergenic 45.0%
GTAACCAATCATCATCCTCG+AGG + chr1_4:70689375-70689394 None:intergenic 45.0%
AGTCTTCTTATGGGCCTTAC+CGG + chr1_4:70689416-70689435 None:intergenic 45.0%
CCTCCTCATCAGTCTTCTTA+TGG + chr1_4:70689426-70689445 None:intergenic 45.0%
CCATAAGAAGACTGATGAGG+AGG - chr1_4:70689423-70689442 Msa0182280:intron 45.0%
TGAATCAGTTGAATCGCGGT+CGG + chr1_4:70689575-70689594 None:intergenic 45.0%
ACGAATCGGAAAACTGAACC+CGG - chr1_4:70689633-70689652 Msa0182280:intron 45.0%
CACGGAAGGTTGCAATGAAT+TGG + chr1_4:70690012-70690031 None:intergenic 45.0%
CAATTCATTGCAACCTTCCG+TGG - chr1_4:70690010-70690029 Msa0182280:intron 45.0%
GTATGGAAAGAGAGGATGAC+AGG - chr1_4:70690686-70690705 Msa0182280:intron 45.0%
AACAATGGTGAAGTGCAACG+AGG - chr1_4:70690851-70690870 Msa0182280:intron 45.0%
!! ACCGGAGGGAGTATTTGATT+AGG - chr1_4:70691120-70691139 Msa0182280:CDS 45.0%
GCCTAATCAAATACTCCCTC+CGG + chr1_4:70691124-70691143 None:intergenic 45.0%
CTGATGCAGATCTTCGATCA+TGG - chr1_4:70691362-70691381 Msa0182280:CDS 45.0%
! GTTCTTTCGGTGTATGGCAT+AGG - chr1_4:70691546-70691565 Msa0182280:CDS 45.0%
!!! TATTTTAGAATAAAAATAAA+AGG + chr1_4:70689121-70689140 None:intergenic 5.0%
!!! AATAATTAATGATTATATTT+TGG + chr1_4:70691676-70691695 None:intergenic 5.0%
CCATCGAGGCACACGATATT+GGG + chr1_4:70689028-70689047 None:intergenic 50.0%
ACCATCGAGGCACACGATAT+TGG + chr1_4:70689029-70689048 None:intergenic 50.0%
GGTGGAAACAGTGAATGTGG+TGG - chr1_4:70689348-70689367 Msa0182280:intron 50.0%
TGGACCTCGAGGATGATGAT+TGG - chr1_4:70689368-70689387 Msa0182280:intron 50.0%
ATTGGTTACCTTCGCCACCA+AGG - chr1_4:70689386-70689405 Msa0182280:intron 50.0%
TTGGTTACCTTCGCCACCAA+GGG - chr1_4:70689387-70689406 Msa0182280:intron 50.0%
GGCCCATAAGAAGACTGATG+AGG - chr1_4:70689420-70689439 Msa0182280:intron 50.0%
AGGCAGGCAGATCAGAAACA+TGG + chr1_4:70690248-70690267 None:intergenic 50.0%
TTCCATTTCAAGGCTGGCAG+GGG + chr1_4:70690485-70690504 None:intergenic 50.0%
CTTCCATTTCAAGGCTGGCA+GGG + chr1_4:70690486-70690505 None:intergenic 50.0%
TCTTCCATTTCAAGGCTGGC+AGG + chr1_4:70690487-70690506 None:intergenic 50.0%
GAAAGAGAGGATGACAGGGT+GGG - chr1_4:70690691-70690710 Msa0182280:intron 50.0%
AAAGAGAGGATGACAGGGTG+GGG - chr1_4:70690692-70690711 Msa0182280:intron 50.0%
TCACCGCCATTATCGCTGTC+TGG + chr1_4:70688874-70688893 None:intergenic 55.0%
CCCAATATCGTGTGCCTCGA+TGG - chr1_4:70689025-70689044 Msa0182280:three_prime_UTR 55.0%
!! AGTGAATGTGGTGGACCTCG+AGG - chr1_4:70689357-70689376 Msa0182280:intron 55.0%
TCACTTACGTCGTCCACGGA+AGG + chr1_4:70690026-70690045 None:intergenic 55.0%
AACCCCTGCCAGCCTTGAAA+TGG - chr1_4:70690480-70690499 Msa0182280:CDS 55.0%
GGAAAGAGAGGATGACAGGG+TGG - chr1_4:70690690-70690709 Msa0182280:intron 55.0%
AAGAGAGGATGACAGGGTGG+GGG - chr1_4:70690693-70690712 Msa0182280:intron 55.0%
CCACAACAGCTGCCGTGAAA+AGG + chr1_4:70691741-70691760 None:intergenic 55.0%
! CCTTTTCACGGCAGCTGTTG+TGG - chr1_4:70691738-70691757 Msa0182280:five_prime_UTR 55.0%
GCAGCTGTTGGCCCTCTCTA+AGG - chr1_4:70691709-70691728 Msa0182280:five_prime_UTR 60.0%
CCTTCGCCACCAAGGGTCAC+CGG - chr1_4:70689394-70689413 Msa0182280:intron 65.0%
GCCACCAAGGGTCACCGGTA+AGG - chr1_4:70689399-70689418 Msa0182280:intron 65.0%
GCCTTACCGGTGACCCTTGG+TGG + chr1_4:70689403-70689422 None:intergenic 65.0%
TGGGCCTTACCGGTGACCCT+TGG + chr1_4:70689406-70689425 None:intergenic 65.0%
AGAGGATGACAGGGTGGGGG+TGG - chr1_4:70690696-70690715 Msa0182280:intron 65.0%
!! CCGGTGACCCTTGGTGGCGA+AGG + chr1_4:70689397-70689416 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 70688740 70691836 70688740 ID=Msa0182280;Name=Msa0182280
chr1_4 mRNA 70688740 70691836 70688740 ID=Msa0182280-mRNA-1;Parent=Msa0182280;Name=Msa0182280-mRNA-1;_AED=0.07;_eAED=0.07;_QI=144|1|1|1|0.83|0.71|7|471|220
chr1_4 exon 70688740 70689205 70688740 ID=Msa0182280-mRNA-1:exon:23671;Parent=Msa0182280-mRNA-1
chr1_4 exon 70690028 70690200 70690028 ID=Msa0182280-mRNA-1:exon:23670;Parent=Msa0182280-mRNA-1
chr1_4 exon 70690446 70690653 70690446 ID=Msa0182280-mRNA-1:exon:23669;Parent=Msa0182280-mRNA-1
chr1_4 exon 70691109 70691251 70691109 ID=Msa0182280-mRNA-1:exon:23668;Parent=Msa0182280-mRNA-1
chr1_4 exon 70691348 70691415 70691348 ID=Msa0182280-mRNA-1:exon:23667;Parent=Msa0182280-mRNA-1
chr1_4 exon 70691530 70691599 70691530 ID=Msa0182280-mRNA-1:exon:23666;Parent=Msa0182280-mRNA-1
chr1_4 exon 70691687 70691836 70691687 ID=Msa0182280-mRNA-1:exon:23665;Parent=Msa0182280-mRNA-1
chr1_4 five_prime_UTR 70691693 70691836 70691693 ID=Msa0182280-mRNA-1:five_prime_utr;Parent=Msa0182280-mRNA-1
chr1_4 CDS 70691687 70691692 70691687 ID=Msa0182280-mRNA-1:cds;Parent=Msa0182280-mRNA-1
chr1_4 CDS 70691530 70691599 70691530 ID=Msa0182280-mRNA-1:cds;Parent=Msa0182280-mRNA-1
chr1_4 CDS 70691348 70691415 70691348 ID=Msa0182280-mRNA-1:cds;Parent=Msa0182280-mRNA-1
chr1_4 CDS 70691109 70691251 70691109 ID=Msa0182280-mRNA-1:cds;Parent=Msa0182280-mRNA-1
chr1_4 CDS 70690446 70690653 70690446 ID=Msa0182280-mRNA-1:cds;Parent=Msa0182280-mRNA-1
chr1_4 CDS 70690033 70690200 70690033 ID=Msa0182280-mRNA-1:cds;Parent=Msa0182280-mRNA-1
chr1_4 three_prime_UTR 70690028 70690032 70690028 ID=Msa0182280-mRNA-1:three_prime_utr;Parent=Msa0182280-mRNA-1
chr1_4 three_prime_UTR 70688740 70689205 70688740 ID=Msa0182280-mRNA-1:three_prime_utr;Parent=Msa0182280-mRNA-1
Gene Sequence

>Msa0182280

ATGGCGGATGAAACCGAAGAACTTGAACCCTTGTTTGATTACAGTCGCGTTCAACCCAATATCGTGTGCCTCGATGATGATGAAGACGATGATGTTGTTGCTGTTCCTAAGAAGAGAAAGAAGAATTCTAAGTCTCAACATGTAGTTGAGAATGGGAAGAATACTAAGGTGGAAACAGTGAATGTGGTGGACCTCGAGGATGATGATTGGTTACCTTCGCCACCAAGGGTCACCGGTAAGGCCCATAAGAAGACTGATGAGGAGGATTCAACTTTGAAGAATTTGAGATTGAAGAAGCAGGAGCTTGCCGCTTTTGCTGAATCAGCAAAAAAATTGTTGAAAACTGTTGAGAATTCTGTAGAAATTGAAAATTCCAATTCATTGCAACCTTCCGTGGACGACGTAAGTGAAAAAGCGTCAAAACCTTCTGAACGAGCAAAGATTCTCATCTCTGTTCAAGACAAGGATGAAACAAAGCAGATTCGGATGTTTATGGATGACCAGTTTGAAAGGATTATCAAAACATATGCTGAGAAAATGAAGTGTGATCTGAAACAAATTGTGTTGTCATTTGATGGTGATAAAATAAGTTCATCTCAAACCCCTGCCAGCCTTGAAATGGAAGATAATGATATTATTGAAGTTCATGTGAAGTCAAGTTGA

Protein sequence

>Msa0182280

MADETEELEPLFDYSRVQPNIVCLDDDEDDDVVAVPKKRKKNSKSQHVVENGKNTKVETVNVVDLEDDDWLPSPPRVTGKAHKKTDEEDSTLKNLRLKKQELAAFAESAKKLLKTVENSVEIENSNSLQPSVDDVSEKASKPSERAKILISVQDKDETKQIRMFMDDQFERIIKTYAEKMKCDLKQIVLSFDGDKISSSQTPASLEMEDNDIIEVHVKSS*