AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0847080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0847080 MtrunA17_Chr5g0419351 98.824 170 2 0 1 170 1 170 3.66e-123 343
Msa0847080 MtrunA17_Chr3g0119311 45.238 84 45 1 10 93 36 118 5.76e-16 70.5
Msa0847080 MtrunA17_Chr7g0219021 44.000 75 42 0 12 86 42 116 2.96e-15 70.9
Msa0847080 MtrunA17_Chr4g0061451 36.905 84 53 0 3 86 35 118 4.25e-14 68.2
Msa0847080 MtrunA17_Chr3g0121631 34.884 86 55 1 1 86 27 111 2.04e-13 63.9
Msa0847080 MtrunA17_Chr1g0210241 37.647 85 53 0 4 88 1 85 5.68e-13 65.1
Msa0847080 MtrunA17_Chr4g0035031 42.667 75 43 0 12 86 10 84 2.42e-12 62.0
Msa0847080 MtrunA17_Chr7g0266751 37.179 78 49 0 12 89 34 111 1.47e-11 58.9
Msa0847080 MtrunA17_Chr3g0086861 38.667 75 46 0 12 86 46 120 2.25e-11 61.2
Msa0847080 MtrunA17_Chr4g0035001 41.333 75 44 0 12 86 8 82 3.20e-11 58.5
Msa0847080 MtrunA17_Chr4g0035051 40.000 75 45 0 12 86 10 84 3.51e-11 57.4
Msa0847080 MtrunA17_Chr4g0050781 36.709 79 50 0 12 90 9 87 3.66e-11 59.3
Msa0847080 MtrunA17_Chr8g0393061 37.975 79 49 0 10 88 211 289 6.27e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0847080 AT1G13690.1 82.209 163 28 1 9 170 12 174 3.00e-98 281
Msa0847080 AT5G61030.2 45.333 75 41 0 12 86 42 116 1.17e-16 75.9
Msa0847080 AT5G61030.1 45.333 75 41 0 12 86 42 116 1.17e-16 75.9
Msa0847080 AT3G08000.1 43.373 83 46 1 12 94 43 124 1.51e-16 72.4
Msa0847080 AT4G39260.3 42.529 87 48 1 12 98 8 92 7.47e-15 66.6
Msa0847080 AT4G13850.4 44.000 75 42 0 12 86 37 111 1.93e-13 63.9
Msa0847080 AT4G39260.2 44.000 75 42 0 12 86 8 82 2.13e-13 63.9
Msa0847080 AT4G13850.3 44.000 75 42 0 12 86 37 111 2.18e-13 64.3
Msa0847080 AT4G13850.2 44.000 75 42 0 12 86 37 111 2.63e-13 64.3
Msa0847080 AT4G13850.1 44.000 75 42 0 12 86 37 111 2.90e-13 64.3
Msa0847080 AT1G74230.1 38.636 88 50 2 2 86 23 109 4.90e-13 65.9
Msa0847080 AT4G39260.1 44.000 75 42 0 12 86 8 82 5.16e-13 63.9
Msa0847080 AT3G23830.2 41.333 75 44 0 12 86 37 111 1.46e-12 62.0
Msa0847080 AT3G23830.1 41.333 75 44 0 12 86 37 111 1.46e-12 62.0
Msa0847080 AT2G21660.2 39.286 84 51 0 3 86 1 84 3.24e-12 61.6
Msa0847080 AT5G04280.1 38.202 89 52 1 1 89 1 86 4.10e-12 63.2
Msa0847080 AT2G21660.1 39.286 84 51 0 3 86 1 84 4.38e-12 61.6
Msa0847080 AT4G13860.1 38.889 72 44 0 12 83 5 76 1.76e-11 57.8
Msa0847080 AT1G60650.2 35.714 84 54 0 6 89 8 91 6.84e-11 59.7
Msa0847080 AT1G60650.1 35.714 84 54 0 6 89 8 91 6.84e-11 59.7

Find 75 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAATATATTCATATTATT+TGG 0.182401 5_4:-28477891 None:intergenic
TGCTCTTCCTGAAAAGATTA+AGG 0.186812 5_4:+28478366 Msa0847080:CDS
TTTCAAACAAGAACATTAAA+AGG 0.254081 5_4:+28478003 Msa0847080:five_prime_UTR
CTATACTGTTTCATAATCTA+TGG 0.296043 5_4:-28480629 None:intergenic
TTTCAGTTCAGTTAAGAGTT+AGG 0.312328 5_4:-28478083 None:intergenic
GAAGAATATATTCATGTATC+TGG 0.317906 5_4:+28480756 Msa0847080:three_prime_UTR
ACGCAGAAGCATCGTTCTTT+CGG 0.352412 5_4:+28478250 Msa0847080:CDS
AGATTATGAAACAGTATAGA+TGG 0.355396 5_4:+28480633 Msa0847080:three_prime_UTR
TTCCGCCGCCATGGATAATA+TGG 0.365330 5_4:+28478303 Msa0847080:CDS
TTTCTCTCCTTCCCGCTCTT+CGG 0.397348 5_4:-28480373 None:intergenic
ATTCTTCAGAATTCTCAGTT+TGG 0.398322 5_4:-28480740 None:intergenic
TTCAGTTCAGTTAAGAGTTA+GGG 0.408598 5_4:-28478082 None:intergenic
CGGAAGCATCTTCCCTTTCA+AGG 0.410203 5_4:-28478285 None:intergenic
GCTCTTCCTGAAAAGATTAA+GGG 0.410601 5_4:+28478367 Msa0847080:CDS
CAGCTTTATTCTCTGCTTCG+AGG 0.410867 5_4:-28480311 None:intergenic
TTTGGGCGGATGCGGATACT+TGG 0.419214 5_4:+28480253 Msa0847080:CDS
AAAATAAAATAAAATAAAGT+TGG 0.423271 5_4:+28478045 Msa0847080:five_prime_UTR
CGTCGGTGGTTTAGCGGAAG+AGG 0.445488 5_4:+28478150 Msa0847080:CDS
GTTGTTGCAAATTGAGATCA+AGG 0.446045 5_4:+28480444 Msa0847080:exon
AACGATGCTTCTGCGTTGCT+TGG 0.446571 5_4:-28478243 None:intergenic
GAAGCAAGTAGCCGAAGAGC+GGG 0.453125 5_4:+28480362 Msa0847080:CDS
GCTTCGTCACTTTCCTTGAA+AGG 0.458125 5_4:+28478272 Msa0847080:CDS
CTTCGTCACTTTCCTTGAAA+GGG 0.466861 5_4:+28478273 Msa0847080:CDS
TTAACAATACAATACAAGTA+AGG 0.474208 5_4:-28480702 None:intergenic
AGAGAATAAAGCTGCAATGC+TGG 0.474659 5_4:+28480320 Msa0847080:CDS
TGTCAGTTGAATCTAATGTA+TGG 0.476748 5_4:+28480594 Msa0847080:three_prime_UTR
ATCAGAGGGAGCACTTGGTA+AGG 0.483404 5_4:+28480534 Msa0847080:three_prime_UTR
TCTCTACGTCGGTGGTTTAG+CGG 0.487229 5_4:+28478144 Msa0847080:CDS
AAGATTAAGGGTGGTGAACA+AGG 0.491175 5_4:+28478379 Msa0847080:CDS
CATACCCTTCGGAGATATCA+AGG 0.495043 5_4:+28478201 Msa0847080:CDS
TGAGATCAAAGATGATCCTA+TGG 0.502753 5_4:+28480404 Msa0847080:CDS
AAGGACAATCCTATGACAAA+AGG 0.503686 5_4:+28480463 Msa0847080:three_prime_UTR
ATGGATGGTGCTGAACTATA+TGG 0.503881 5_4:+28478322 Msa0847080:CDS
CATGCGGCGTTCATACCCTT+CGG 0.509469 5_4:+28478190 Msa0847080:CDS
TGTAAATCAGAGGGAGCACT+TGG 0.528749 5_4:+28480529 Msa0847080:three_prime_UTR
GATTATGAAACAGTATAGAT+GGG 0.535216 5_4:+28480634 Msa0847080:three_prime_UTR
TTCTGCGTTGCTTGGTCAAG+CGG 0.538224 5_4:-28478235 None:intergenic
GAGGTTGTTCAACAGAAAGA+TGG 0.542216 5_4:+28480494 Msa0847080:three_prime_UTR
CAACAATGGCGATGATGCAA+GGG 0.542406 5_4:+28478107 Msa0847080:exon
TTAAGGGTGGTGAACAAGGA+TGG 0.543887 5_4:+28478383 Msa0847080:CDS
GGAAGATGCTTCCGCCGCCA+TGG 0.549924 5_4:+28478294 Msa0847080:CDS
GCAACAATGGCGATGATGCA+AGG 0.550286 5_4:+28478106 Msa0847080:exon
CACGTCCTTGATATCTCCGA+AGG 0.553071 5_4:-28478206 None:intergenic
TCTGCTTCAGCCCTTGCCAT+AGG 0.559803 5_4:-28480420 None:intergenic
ATCCATATTATCCATGGCGG+CGG 0.566198 5_4:-28478305 None:intergenic
AACTTGTATTTGTAAATCAG+AGG 0.572166 5_4:+28480519 Msa0847080:three_prime_UTR
TAAGGGTGGTGAACAAGGAT+GGG 0.577061 5_4:+28478384 Msa0847080:CDS
AGCACCATCCATATTATCCA+TGG 0.577845 5_4:-28478311 None:intergenic
AGGGTATGAACGCCGCATGA+AGG 0.578831 5_4:-28478186 None:intergenic
GGAAGCAAGTAGCCGAAGAG+CGG 0.585397 5_4:+28480361 Msa0847080:CDS
TCAGAGGGAGCACTTGGTAA+GGG 0.589642 5_4:+28480535 Msa0847080:three_prime_UTR
AATAAAGTTGGTAATTGCAG+AGG 0.590630 5_4:+28478057 Msa0847080:five_prime_UTR
CAAGTAGCCGAAGAGCGGGA+AGG 0.590737 5_4:+28480366 Msa0847080:CDS
ATACAATACAAGTAAGGCAA+TGG 0.594584 5_4:-28480696 None:intergenic
GGTTCATTTAAAGAATGTGT+AGG 0.596890 5_4:+28480817 Msa0847080:three_prime_UTR
GCCGCCATGGATAATATGGA+TGG 0.598509 5_4:+28478307 Msa0847080:CDS
TGGCTGCTGAAGAACTGCAC+AGG 0.598798 5_4:+28480340 Msa0847080:CDS
TGAACGACAGCAACAAGAAG+AGG 0.599680 5_4:+28480278 Msa0847080:CDS
TATGGCAAGGGCTGAAGCAG+AGG 0.602950 5_4:+28480422 Msa0847080:CDS
CAAAGATGATCCTATGGCAA+GGG 0.603906 5_4:+28480410 Msa0847080:CDS
TCAAAGATGATCCTATGGCA+AGG 0.607783 5_4:+28480409 Msa0847080:CDS
AACTGAACTGAAAGCAACAA+TGG 0.607905 5_4:+28478093 Msa0847080:exon
ACTTGTATTTGTAAATCAGA+GGG 0.609336 5_4:+28480520 Msa0847080:three_prime_UTR
ATGACAAAAGGCTGAAGCAG+AGG 0.615703 5_4:+28480475 Msa0847080:three_prime_UTR
ATACAAGTAAGGCAATGGAC+AGG 0.628648 5_4:-28480691 None:intergenic
TCAAAGTCAAAACTATCAGA+CGG 0.646980 5_4:-28480788 None:intergenic
ACGTCCTTGATATCTCCGAA+GGG 0.665056 5_4:-28478205 None:intergenic
AACAATGGCGATGATGCAAG+GGG 0.670281 5_4:+28478108 Msa0847080:exon
CTTCCTGAAAAGATTAAGGG+TGG 0.671578 5_4:+28478370 Msa0847080:CDS
GGGTATGTGAGCAATTGAAG+TGG 0.672953 5_4:+28477965 Msa0847080:five_prime_UTR
GAACGAATCAATCCTTCATG+CGG 0.674079 5_4:+28478174 Msa0847080:CDS
AAGAACACTCTCTACGTCGG+TGG 0.677653 5_4:+28478136 Msa0847080:CDS
ATTATGAAACAGTATAGATG+GGG 0.678443 5_4:+28480635 Msa0847080:three_prime_UTR
ACCATCCATATTATCCATGG+CGG 0.687486 5_4:-28478308 None:intergenic
CAAAAGAACACTCTCTACGT+CGG 0.696745 5_4:+28478133 Msa0847080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATGAGATAAATAAA+AGG + chr5_4:28478523-28478542 Msa0847080:intron 10.0%
!! TTATTATGAGATAAATAAAA+GGG + chr5_4:28478524-28478543 Msa0847080:intron 10.0%
!!! CATAAATACTTTATTTTTTT+TGG + chr5_4:28479500-28479519 Msa0847080:intron 10.0%
!!! AAACTTAGATTTATTTCTTT+AGG - chr5_4:28478874-28478893 None:intergenic 15.0%
!!! ATATTAGTAGTTATTTTGTT+AGG + chr5_4:28479141-28479160 Msa0847080:intron 15.0%
!!! TATTAGTAGTTATTTTGTTA+GGG + chr5_4:28479142-28479161 Msa0847080:intron 15.0%
!! TTTATTTGGTTAAATTGATT+CGG + chr5_4:28479289-28479308 Msa0847080:intron 15.0%
!!! AAATTGAGTTTGAAATAAAT+AGG + chr5_4:28479315-28479334 Msa0847080:intron 15.0%
!!! TAAGTTGAAAAATTAATACT+AGG - chr5_4:28479401-28479420 None:intergenic 15.0%
!!! AAATACTTTATTTTTTTTGG+TGG + chr5_4:28479503-28479522 Msa0847080:intron 15.0%
!!! GAAAGTGAAAAATTATTTTA+AGG + chr5_4:28479619-28479638 Msa0847080:intron 15.0%
!!! TGTATTTTTGGTTATTTGAT+GGG + chr5_4:28477945-28477964 Msa0847080:five_prime_UTR 20.0%
!! TTTCAAACAAGAACATTAAA+AGG + chr5_4:28478003-28478022 Msa0847080:five_prime_UTR 20.0%
!!! TTTTTCTTTGATGTGAAATT+GGG - chr5_4:28478029-28478048 None:intergenic 20.0%
!!! ATTTTTCTTTGATGTGAAAT+TGG - chr5_4:28478030-28478049 None:intergenic 20.0%
!!! TTGATTTTGTGTTTATGTTT+AGG + chr5_4:28478453-28478472 Msa0847080:intron 20.0%
!!! TGATTTTGTGTTTATGTTTA+GGG + chr5_4:28478454-28478473 Msa0847080:intron 20.0%
!!! CTTAATGATTTTATGTTGAA+CGG + chr5_4:28478547-28478566 Msa0847080:intron 20.0%
!! TTGATAGAATTATGAATTTG+AGG + chr5_4:28478810-28478829 Msa0847080:intron 20.0%
!!! TTTTATATGAGAAAAACCAA+AGG + chr5_4:28479437-28479456 Msa0847080:intron 20.0%
!! TAATTATCCATCATGAATTA+TGG - chr5_4:28479807-28479826 None:intergenic 20.0%
!!! ATCAGTTTTAATCCTTTTAA+AGG + chr5_4:28479961-28479980 Msa0847080:intron 20.0%
!!! AAAAAATTACAAGTTTTACC+TGG + chr5_4:28480109-28480128 Msa0847080:intron 20.0%
!! ATTTCTTAAGCTATATATGA+AGG + chr5_4:28480152-28480171 Msa0847080:intron 20.0%
!!! TTTGTTTCAATTTTCAGTTT+GGG + chr5_4:28480236-28480255 Msa0847080:intron 20.0%
!! TTAACAATACAATACAAGTA+AGG - chr5_4:28480705-28480724 None:intergenic 20.0%
!!! GTGTATTTTTGGTTATTTGA+TGG + chr5_4:28477944-28477963 Msa0847080:five_prime_UTR 25.0%
! TTACTGAACTTAAACATTAG+TGG + chr5_4:28478589-28478608 Msa0847080:intron 25.0%
!!! AAATTTGTTACGAAAACAGA+AGG - chr5_4:28478791-28478810 None:intergenic 25.0%
! ACAAAAACAAGTTCGTTATT+AGG + chr5_4:28479042-28479061 Msa0847080:intron 25.0%
! CAAAAACAAGTTCGTTATTA+GGG + chr5_4:28479043-28479062 Msa0847080:intron 25.0%
! AAAAACAAGTTCGTTATTAG+GGG + chr5_4:28479044-28479063 Msa0847080:intron 25.0%
! TTCATCAAACTCTAAACTAA+AGG - chr5_4:28479099-28479118 None:intergenic 25.0%
!!! TGAAACTGTTTTTCTTTTAC+AGG + chr5_4:28479115-28479134 Msa0847080:intron 25.0%
!! GAGTTTGAAATAAATAGGTT+TGG + chr5_4:28479320-28479339 Msa0847080:intron 25.0%
!!! TACTTTATTTTTTTTGGTGG+TGG + chr5_4:28479506-28479525 Msa0847080:intron 25.0%
! ATATGCAATAATGTTGTCTA+AGG - chr5_4:28479720-28479739 None:intergenic 25.0%
! ACAACATTATTGCATATTGA+AGG + chr5_4:28479723-28479742 Msa0847080:intron 25.0%
!!! AAAAAGCATTTAACATAACC+AGG - chr5_4:28479904-28479923 None:intergenic 25.0%
! TAAAATGATCTCAACTTTCT+TGG + chr5_4:28480182-28480201 Msa0847080:intron 25.0%
!!! GTTCAATTTTTTCACTTATG+TGG + chr5_4:28480204-28480223 Msa0847080:intron 25.0%
!! GTTTGTTTCAATTTTCAGTT+TGG + chr5_4:28480235-28480254 Msa0847080:intron 25.0%
! AACTTGTATTTGTAAATCAG+AGG + chr5_4:28480519-28480538 Msa0847080:three_prime_UTR 25.0%
! ACTTGTATTTGTAAATCAGA+GGG + chr5_4:28480520-28480539 Msa0847080:three_prime_UTR 25.0%
! CTATACTGTTTCATAATCTA+TGG - chr5_4:28480632-28480651 None:intergenic 25.0%
! AGATTATGAAACAGTATAGA+TGG + chr5_4:28480633-28480652 Msa0847080:three_prime_UTR 25.0%
! GATTATGAAACAGTATAGAT+GGG + chr5_4:28480634-28480653 Msa0847080:three_prime_UTR 25.0%
! ATTATGAAACAGTATAGATG+GGG + chr5_4:28480635-28480654 Msa0847080:three_prime_UTR 25.0%
! GAAGAATATATTCATGTATC+TGG + chr5_4:28480756-28480775 Msa0847080:three_prime_UTR 25.0%
AAAAATACACTTGCTCTTGT+TGG - chr5_4:28477934-28477953 None:intergenic 30.0%
! AACAAGAGCAAGTGTATTTT+TGG + chr5_4:28477933-28477952 Msa0847080:five_prime_UTR 30.0%
!! AATAAAGTTGGTAATTGCAG+AGG + chr5_4:28478057-28478076 Msa0847080:five_prime_UTR 30.0%
TTCAGTTCAGTTAAGAGTTA+GGG - chr5_4:28478085-28478104 None:intergenic 30.0%
TTTCAGTTCAGTTAAGAGTT+AGG - chr5_4:28478086-28478105 None:intergenic 30.0%
AAGAGAATCGAAGATTTACT+TGG - chr5_4:28478418-28478437 None:intergenic 30.0%
TTATGAATTTGAGGAAGTCA+TGG + chr5_4:28478819-28478838 Msa0847080:intron 30.0%
TATGAATTTGAGGAAGTCAT+GGG + chr5_4:28478820-28478839 Msa0847080:intron 30.0%
TTCTAGATAGCGTATTACAA+AGG - chr5_4:28478899-28478918 None:intergenic 30.0%
AGAGAAATGTTAGTAGTTAC+TGG + chr5_4:28479169-28479188 Msa0847080:intron 30.0%
GAGAAATGTTAGTAGTTACT+GGG + chr5_4:28479170-28479189 Msa0847080:intron 30.0%
! TTTTACTCTCAAAGCAAGTA+TGG + chr5_4:28479361-28479380 Msa0847080:intron 30.0%
TTTACTCTCAAAGCAAGTAT+GGG + chr5_4:28479362-28479381 Msa0847080:intron 30.0%
TATGAGAAAAACCAAAGGTA+TGG + chr5_4:28479442-28479461 Msa0847080:intron 30.0%
ATTATTCAACTCCATACCTT+TGG - chr5_4:28479456-28479475 None:intergenic 30.0%
!!! TTATTTTTTTTGGTGGTGGT+CGG + chr5_4:28479510-28479529 Msa0847080:intron 30.0%
GACAATGCATAATATATGCA+AGG - chr5_4:28479552-28479571 None:intergenic 30.0%
CATCATGAACTATATCATAC+AGG - chr5_4:28479839-28479858 None:intergenic 30.0%
ATCAGTATCACTCCTTTAAA+AGG - chr5_4:28479976-28479995 None:intergenic 30.0%
!! TCTTTGTTTATCCGATGTTT+TGG + chr5_4:28480040-28480059 Msa0847080:intron 30.0%
TTAAGAAGCAACCAAAACAT+CGG - chr5_4:28480054-28480073 None:intergenic 30.0%
TGTCAGTTGAATCTAATGTA+TGG + chr5_4:28480594-28480613 Msa0847080:three_prime_UTR 30.0%
ATACAATACAAGTAAGGCAA+TGG - chr5_4:28480699-28480718 None:intergenic 30.0%
ATTCTTCAGAATTCTCAGTT+TGG - chr5_4:28480743-28480762 None:intergenic 30.0%
TCAAAGTCAAAACTATCAGA+CGG - chr5_4:28480791-28480810 None:intergenic 30.0%
!!! TCTGATAGTTTTGACTTTGA+AGG + chr5_4:28480791-28480810 Msa0847080:three_prime_UTR 30.0%
AACTGAACTGAAAGCAACAA+TGG + chr5_4:28478093-28478112 Msa0847080:exon 35.0%
TGCTCTTCCTGAAAAGATTA+AGG + chr5_4:28478366-28478385 Msa0847080:CDS 35.0%
GCTCTTCCTGAAAAGATTAA+GGG + chr5_4:28478367-28478386 Msa0847080:CDS 35.0%
! GTGTTTATGTTTAGGGTTTG+AGG + chr5_4:28478461-28478480 Msa0847080:intron 35.0%
TAGGGTTTGAGGATTGAATT+AGG + chr5_4:28478472-28478491 Msa0847080:intron 35.0%
GCATTTGCAATGTTGTCAAA+TGG + chr5_4:28478622-28478641 Msa0847080:intron 35.0%
! TGTTGTCAAATGGTGTCAAA+TGG + chr5_4:28478632-28478651 Msa0847080:intron 35.0%
GGACAAAACTTTAGATCAGT+AGG + chr5_4:28478711-28478730 Msa0847080:intron 35.0%
!!! TCCTTAGCTGCTTTTCAATA+TGG + chr5_4:28478740-28478759 Msa0847080:intron 35.0%
ACCATATTGAAAAGCAGCTA+AGG - chr5_4:28478744-28478763 None:intergenic 35.0%
TTGCTATCTTCGATTGACAA+TGG + chr5_4:28478981-28479000 Msa0847080:intron 35.0%
TAGTTACTGGGATTGAACAT+TGG + chr5_4:28479182-28479201 Msa0847080:intron 35.0%
GGACTTGCATATAACTCATT+TGG + chr5_4:28479203-28479222 Msa0847080:intron 35.0%
ATAGCCCAATGGTTTATGTT+GGG - chr5_4:28479232-28479251 None:intergenic 35.0%
AATAGCCCAATGGTTTATGT+TGG - chr5_4:28479233-28479252 None:intergenic 35.0%
AAACCATTGGGCTATTCATT+TGG + chr5_4:28479237-28479256 Msa0847080:intron 35.0%
TTTCCAAATGAATAGCCCAA+TGG - chr5_4:28479243-28479262 None:intergenic 35.0%
TTACTCTCAAAGCAAGTATG+GGG + chr5_4:28479363-28479382 Msa0847080:intron 35.0%
!!! TATTTTTTTTGGTGGTGGTC+GGG + chr5_4:28479511-28479530 Msa0847080:intron 35.0%
TGCATAATATATGCAAGGTC+CGG - chr5_4:28479547-28479566 None:intergenic 35.0%
TAAGGCATAGTCAATTCTGA+AGG + chr5_4:28479637-28479656 Msa0847080:intron 35.0%
GAACTATATCATACAGGCAA+TGG - chr5_4:28479833-28479852 None:intergenic 35.0%
ATGTATCTGCACAATTATGC+TGG + chr5_4:28479856-28479875 Msa0847080:intron 35.0%
TGTATCTGCACAATTATGCT+GGG + chr5_4:28479857-28479876 Msa0847080:intron 35.0%
! ATACTGATGAAAGAGCATGA+TGG + chr5_4:28479988-28480007 Msa0847080:intron 35.0%
!! GAATTTTTCAAATCTCAGCC+AGG - chr5_4:28480130-28480149 None:intergenic 35.0%
! GTTTCAATTTTCAGTTTGGG+CGG + chr5_4:28480239-28480258 Msa0847080:intron 35.0%
TGAGATCAAAGATGATCCTA+TGG + chr5_4:28480404-28480423 Msa0847080:CDS 35.0%
GTTGTTGCAAATTGAGATCA+AGG + chr5_4:28480444-28480463 Msa0847080:exon 35.0%
AAGGACAATCCTATGACAAA+AGG + chr5_4:28480463-28480482 Msa0847080:three_prime_UTR 35.0%
!!! TAGTTTTGACTTTGAAGGCA+TGG + chr5_4:28480796-28480815 Msa0847080:three_prime_UTR 35.0%
CAAAAGAACACTCTCTACGT+CGG + chr5_4:28478133-28478152 Msa0847080:CDS 40.0%
GAACGAATCAATCCTTCATG+CGG + chr5_4:28478174-28478193 Msa0847080:CDS 40.0%
! CTTCGTCACTTTCCTTGAAA+GGG + chr5_4:28478273-28478292 Msa0847080:CDS 40.0%
ACCATCCATATTATCCATGG+CGG - chr5_4:28478311-28478330 None:intergenic 40.0%
AGCACCATCCATATTATCCA+TGG - chr5_4:28478314-28478333 None:intergenic 40.0%
! ATGGATGGTGCTGAACTATA+TGG + chr5_4:28478322-28478341 Msa0847080:CDS 40.0%
CTTCCTGAAAAGATTAAGGG+TGG + chr5_4:28478370-28478389 Msa0847080:CDS 40.0%
! TCACCACCCTTAATCTTTTC+AGG - chr5_4:28478376-28478395 None:intergenic 40.0%
AAGATTAAGGGTGGTGAACA+AGG + chr5_4:28478379-28478398 Msa0847080:CDS 40.0%
AGCTATATCATTGTACGTCG+CGG + chr5_4:28478937-28478956 Msa0847080:intron 40.0%
CTATCTTCGATTGACAATGG+TGG + chr5_4:28478984-28479003 Msa0847080:intron 40.0%
GGGAATTGCTTAGAATGTAG+AGG + chr5_4:28479064-28479083 Msa0847080:intron 40.0%
GTGTCCCAACATAAACCATT+GGG + chr5_4:28479225-28479244 Msa0847080:intron 40.0%
CATAATATATGCAAGGTCCG+GGG - chr5_4:28479545-28479564 None:intergenic 40.0%
GCATAATATATGCAAGGTCC+GGG - chr5_4:28479546-28479565 None:intergenic 40.0%
!!! ATGGTGCAGAGGCATTTTAA+GGG - chr5_4:28479788-28479807 None:intergenic 40.0%
!!! TATGGTGCAGAGGCATTTTA+AGG - chr5_4:28479789-28479808 None:intergenic 40.0%
CATCATGAATTATGGTGCAG+AGG - chr5_4:28479799-28479818 None:intergenic 40.0%
CTCTGCACCATAATTCATGA+TGG + chr5_4:28479797-28479816 Msa0847080:intron 40.0%
AGAGAATAAAGCTGCAATGC+TGG + chr5_4:28480320-28480339 Msa0847080:CDS 40.0%
TCAAAGATGATCCTATGGCA+AGG + chr5_4:28480409-28480428 Msa0847080:CDS 40.0%
CAAAGATGATCCTATGGCAA+GGG + chr5_4:28480410-28480429 Msa0847080:CDS 40.0%
GAGGTTGTTCAACAGAAAGA+TGG + chr5_4:28480494-28480513 Msa0847080:three_prime_UTR 40.0%
ATACAAGTAAGGCAATGGAC+AGG - chr5_4:28480694-28480713 None:intergenic 40.0%
GGGTATGTGAGCAATTGAAG+TGG + chr5_4:28477965-28477984 Msa0847080:five_prime_UTR 45.0%
CAACAATGGCGATGATGCAA+GGG + chr5_4:28478107-28478126 Msa0847080:exon 45.0%
AACAATGGCGATGATGCAAG+GGG + chr5_4:28478108-28478127 Msa0847080:exon 45.0%
CATACCCTTCGGAGATATCA+AGG + chr5_4:28478201-28478220 Msa0847080:CDS 45.0%
ACGTCCTTGATATCTCCGAA+GGG - chr5_4:28478208-28478227 None:intergenic 45.0%
!! ACGCAGAAGCATCGTTCTTT+CGG + chr5_4:28478250-28478269 Msa0847080:CDS 45.0%
! GCTTCGTCACTTTCCTTGAA+AGG + chr5_4:28478272-28478291 Msa0847080:CDS 45.0%
ATCCATATTATCCATGGCGG+CGG - chr5_4:28478308-28478327 None:intergenic 45.0%
TTAAGGGTGGTGAACAAGGA+TGG + chr5_4:28478383-28478402 Msa0847080:CDS 45.0%
TAAGGGTGGTGAACAAGGAT+GGG + chr5_4:28478384-28478403 Msa0847080:CDS 45.0%
AAACGCGATGAGTTTGCAAC+AGG + chr5_4:28478690-28478709 Msa0847080:intron 45.0%
! CAGAGTATCCTTCCACTTAG+TGG - chr5_4:28479017-28479036 None:intergenic 45.0%
GGTGTCCCAACATAAACCAT+TGG + chr5_4:28479224-28479243 Msa0847080:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr5_4:28479574-28479593 None:intergenic 45.0%
ATTATGCTGGGACACCAATG+CGG + chr5_4:28479869-28479888 Msa0847080:intron 45.0%
CACATTCTGTCTCTCGACTA+TGG - chr5_4:28480014-28480033 None:intergenic 45.0%
CATAGTCGAGAGACAGAATG+TGG + chr5_4:28480012-28480031 Msa0847080:intron 45.0%
! ATTTTCAGTTTGGGCGGATG+CGG + chr5_4:28480245-28480264 Msa0847080:intron 45.0%
TGAACGACAGCAACAAGAAG+AGG + chr5_4:28480278-28480297 Msa0847080:CDS 45.0%
!! CAGCTTTATTCTCTGCTTCG+AGG - chr5_4:28480314-28480333 None:intergenic 45.0%
! CTGCTTCAGCCTTTTGTCAT+AGG - chr5_4:28480475-28480494 None:intergenic 45.0%
ATGACAAAAGGCTGAAGCAG+AGG + chr5_4:28480475-28480494 Msa0847080:three_prime_UTR 45.0%
!! TGTAAATCAGAGGGAGCACT+TGG + chr5_4:28480529-28480548 Msa0847080:three_prime_UTR 45.0%
!! ATAAATATATTCATATTATT+TGG - chr5_4:28477894-28477913 None:intergenic 5.0%
!! AAAATAAAATAAAATAAAGT+TGG + chr5_4:28478045-28478064 Msa0847080:five_prime_UTR 5.0%
!!! ATTTTAAATTAGATTTTATT+TGG + chr5_4:28479275-28479294 Msa0847080:intron 5.0%
GCAACAATGGCGATGATGCA+AGG + chr5_4:28478106-28478125 Msa0847080:exon 50.0%
AAGAACACTCTCTACGTCGG+TGG + chr5_4:28478136-28478155 Msa0847080:CDS 50.0%
TCTCTACGTCGGTGGTTTAG+CGG + chr5_4:28478144-28478163 Msa0847080:CDS 50.0%
CACGTCCTTGATATCTCCGA+AGG - chr5_4:28478209-28478228 None:intergenic 50.0%
TTCTGCGTTGCTTGGTCAAG+CGG - chr5_4:28478238-28478257 None:intergenic 50.0%
AACGATGCTTCTGCGTTGCT+TGG - chr5_4:28478246-28478265 None:intergenic 50.0%
!! CGGAAGCATCTTCCCTTTCA+AGG - chr5_4:28478288-28478307 None:intergenic 50.0%
TTCCGCCGCCATGGATAATA+TGG + chr5_4:28478303-28478322 Msa0847080:CDS 50.0%
GCCGCCATGGATAATATGGA+TGG + chr5_4:28478307-28478326 Msa0847080:CDS 50.0%
GTCTCTTGCCACTAAGTGGA+AGG + chr5_4:28479006-28479025 Msa0847080:intron 50.0%
CCAGGATTCATAAGCCGCAT+TGG - chr5_4:28479886-28479905 None:intergenic 50.0%
CCAATGCGGCTTATGAATCC+TGG + chr5_4:28479883-28479902 Msa0847080:intron 50.0%
TTTCTCTCCTTCCCGCTCTT+CGG - chr5_4:28480376-28480395 None:intergenic 50.0%
!! ATCAGAGGGAGCACTTGGTA+AGG + chr5_4:28480534-28480553 Msa0847080:three_prime_UTR 50.0%
!! TCAGAGGGAGCACTTGGTAA+GGG + chr5_4:28480535-28480554 Msa0847080:three_prime_UTR 50.0%
AGGGTATGAACGCCGCATGA+AGG - chr5_4:28478189-28478208 None:intergenic 55.0%
CATGCGGCGTTCATACCCTT+CGG + chr5_4:28478190-28478209 Msa0847080:CDS 55.0%
GGTGGTCTCTTGCCACTAAG+TGG + chr5_4:28479002-28479021 Msa0847080:intron 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr5_4:28479579-28479598 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr5_4:28479576-28479595 Msa0847080:intron 55.0%
TTTGGGCGGATGCGGATACT+TGG + chr5_4:28480253-28480272 Msa0847080:CDS 55.0%
TGGCTGCTGAAGAACTGCAC+AGG + chr5_4:28480340-28480359 Msa0847080:CDS 55.0%
GGAAGCAAGTAGCCGAAGAG+CGG + chr5_4:28480361-28480380 Msa0847080:CDS 55.0%
GAAGCAAGTAGCCGAAGAGC+GGG + chr5_4:28480362-28480381 Msa0847080:CDS 55.0%
TCTGCTTCAGCCCTTGCCAT+AGG - chr5_4:28480423-28480442 None:intergenic 55.0%
TATGGCAAGGGCTGAAGCAG+AGG + chr5_4:28480422-28480441 Msa0847080:CDS 55.0%
CGTCGGTGGTTTAGCGGAAG+AGG + chr5_4:28478150-28478169 Msa0847080:CDS 60.0%
CAAGTAGCCGAAGAGCGGGA+AGG + chr5_4:28480366-28480385 Msa0847080:CDS 60.0%
GGAAGATGCTTCCGCCGCCA+TGG + chr5_4:28478294-28478313 Msa0847080:CDS 65.0%
GTGGTCGGGAACTCGAACCC+CGG + chr5_4:28479525-28479544 Msa0847080:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 28477885 28480837 28477885 ID=Msa0847080;Name=Msa0847080
chr5_4 mRNA 28477885 28480837 28477885 ID=Msa0847080-mRNA-1;Parent=Msa0847080;Name=Msa0847080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=227|1|1|1|1|1|2|379|170
chr5_4 exon 28477885 28478418 28477885 ID=Msa0847080-mRNA-1:exon:10734;Parent=Msa0847080-mRNA-1
chr5_4 exon 28480253 28480837 28480253 ID=Msa0847080-mRNA-1:exon:10735;Parent=Msa0847080-mRNA-1
chr5_4 five_prime_UTR 28477885 28478111 28477885 ID=Msa0847080-mRNA-1:five_prime_utr;Parent=Msa0847080-mRNA-1
chr5_4 CDS 28478112 28478418 28478112 ID=Msa0847080-mRNA-1:cds;Parent=Msa0847080-mRNA-1
chr5_4 CDS 28480253 28480458 28480253 ID=Msa0847080-mRNA-1:cds;Parent=Msa0847080-mRNA-1
chr5_4 three_prime_UTR 28480459 28480837 28480459 ID=Msa0847080-mRNA-1:three_prime_utr;Parent=Msa0847080-mRNA-1
Gene Sequence

>Msa0847080

ATGGCGATGATGCAAGGGGTTCAAAAGAACACTCTCTACGTCGGTGGTTTAGCGGAAGAGGTGAACGAATCAATCCTTCATGCGGCGTTCATACCCTTCGGAGATATCAAGGACGTGAAGACACCGCTTGACCAAGCAACGCAGAAGCATCGTTCTTTCGGCTTCGTCACTTTCCTTGAAAGGGAAGATGCTTCCGCCGCCATGGATAATATGGATGGTGCTGAACTATATGGTCGTGTTCTTACTGTTAATTATGCTCTTCCTGAAAAGATTAAGGGTGGTGAACAAGGATGGGCTGCTCAACCAATTTGGGCGGATGCGGATACTTGGTTTGAACGACAGCAACAAGAAGAGGACATGCGTCGCCTCGAAGCAGAGAATAAAGCTGCAATGCTGGCTGCTGAAGAACTGCACAGGAAGCAAGTAGCCGAAGAGCGGGAAGGAGAGAAAGATGAAATTGAGATCAAAGATGATCCTATGGCAAGGGCTGAAGCAGAGGTTGTTGCAAATTGA

Protein sequence

>Msa0847080

MAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAQPIWADADTWFERQQQEEDMRRLEAENKAAMLAAEELHRKQVAEEREGEKDEIEIKDDPMARAEAEVVAN*