AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0278950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278950 MtrunA17_Chr2g0292111 95.493 355 16 0 1 355 1 355 0.0 700
Msa0278950 MtrunA17_Chr2g0292151 85.070 355 52 1 1 355 1 354 0.0 621
Msa0278950 MtrunA17_Chr2g0291751 78.592 355 76 0 1 355 1 355 0.0 578
Msa0278950 MtrunA17_Chr2g0292181 75.211 355 86 1 1 355 10 362 0.0 542
Msa0278950 MtrunA17_Chr2g0292241 71.549 355 101 0 1 355 1 355 0.0 527
Msa0278950 MtrunA17_Chr2g0292211 72.394 355 95 2 1 355 12 363 0.0 521
Msa0278950 MtrunA17_Chr2g0292251 71.045 335 96 1 22 355 21 355 3.34e-172 483
Msa0278950 MtrunA17_Chr2g0292261 67.232 354 113 1 1 354 1 351 5.19e-170 477
Msa0278950 MtrunA17_Chr2g0292271 67.606 355 111 3 1 354 1 352 2.10e-168 473
Msa0278950 MtrunA17_Chr2g0292091 65.418 347 113 2 1 347 1 340 2.22e-164 462
Msa0278950 MtrunA17_Chr2g0292291 64.124 354 122 2 2 354 3 352 3.88e-164 462
Msa0278950 MtrunA17_Chr2g0292101 65.569 334 109 2 1 333 1 329 1.39e-156 443
Msa0278950 MtrunA17_Chr7g0258811 57.329 307 130 1 25 330 65 371 9.14e-124 360
Msa0278950 MtrunA17_Chr1g0175561 55.305 311 138 1 21 330 16 326 2.62e-120 350
Msa0278950 MtrunA17_Chr5g0404721 53.974 302 138 1 29 330 30 330 2.45e-111 327
Msa0278950 MtrunA17_Chr8g0372601 50.662 302 148 1 29 330 30 330 1.53e-105 313
Msa0278950 MtrunA17_Chr4g0070951 49.849 331 160 3 2 330 3 329 1.03e-103 308
Msa0278950 MtrunA17_Chr1g0155611 50.000 302 151 0 29 330 46 347 6.31e-99 296
Msa0278950 MtrunA17_Chr2g0299691 48.693 306 152 2 28 330 55 358 6.75e-99 297
Msa0278950 MtrunA17_Chr3g0129051 48.765 324 151 5 5 326 8 318 1.62e-97 292
Msa0278950 MtrunA17_Chr7g0244461 45.538 325 160 3 6 330 5 312 5.38e-96 288
Msa0278950 MtrunA17_Chr3g0114451 48.845 303 146 2 28 330 25 318 6.69e-94 283
Msa0278950 MtrunA17_Chr4g0013171 47.484 318 156 4 15 330 13 321 7.21e-94 283
Msa0278950 MtrunA17_Chr4g0013201 46.774 310 156 2 21 330 38 338 2.96e-93 281
Msa0278950 MtrunA17_Chr3g0106921 47.222 324 155 6 10 330 10 320 5.09e-93 280
Msa0278950 MtrunA17_Chr5g0432441 48.476 328 156 5 7 330 8 326 8.19e-93 280
Msa0278950 MtrunA17_Chr2g0320061 45.541 314 163 2 17 330 13 318 2.12e-92 279
Msa0278950 MtrunA17_Chr4g0068621 47.492 299 152 3 33 330 42 336 4.37e-92 278
Msa0278950 MtrunA17_Chr5g0438021 46.926 309 153 4 24 330 26 325 5.13e-92 278
Msa0278950 MtrunA17_Chr5g0402581 47.213 305 157 3 27 330 25 326 5.18e-92 278
Msa0278950 MtrunA17_Chr4g0013191 48.052 308 148 4 26 330 42 340 5.64e-92 278
Msa0278950 MtrunA17_Chr4g0043391 45.921 331 165 5 3 330 5 324 2.11e-91 276
Msa0278950 MtrunA17_Chr4g0013181 48.667 300 143 4 33 330 63 353 2.65e-91 277
Msa0278950 MtrunA17_Chr4g0038151 45.015 331 168 5 3 330 2 321 2.71e-91 276
Msa0278950 MtrunA17_Chr4g0038171 45.619 331 166 5 3 330 2 321 6.24e-91 275
Msa0278950 MtrunA17_Chr4g0013721 44.984 309 165 3 24 332 95 398 7.84e-91 278
Msa0278950 MtrunA17_Chr7g0244451 47.869 305 150 2 26 330 21 316 9.06e-91 275
Msa0278950 MtrunA17_Chr4g0013821 44.156 308 167 3 25 332 24 326 1.43e-90 275
Msa0278950 MtrunA17_Chr2g0320071 44.375 320 169 2 11 330 7 317 1.91e-90 274
Msa0278950 MtrunA17_Chr4g0038161 45.317 331 166 5 3 330 2 320 3.91e-90 273
Msa0278950 MtrunA17_Chr2g0320101 44.410 322 170 2 9 330 5 317 5.37e-90 273
Msa0278950 MtrunA17_Chr2g0320031 46.557 305 155 2 26 330 23 319 1.10e-89 272
Msa0278950 MtrunA17_Chr2g0320051 45.603 307 159 2 24 330 20 318 1.55e-89 271
Msa0278950 MtrunA17_Chr5g0402571 46.405 306 158 4 27 330 25 326 2.74e-89 271
Msa0278950 MtrunA17_Chr2g0292281 60.515 233 78 3 122 354 18 236 6.43e-89 267
Msa0278950 MtrunA17_Chr5g0432341 45.312 320 164 4 15 331 11 322 7.07e-89 270
Msa0278950 MtrunA17_Chr5g0432351 45.312 320 164 4 15 331 11 322 1.13e-88 269
Msa0278950 MtrunA17_Chr3g0129061 45.732 328 163 5 1 326 4 318 9.25e-88 267
Msa0278950 MtrunA17_Chr4g0024121 44.512 328 171 5 4 330 9 326 1.41e-87 266
Msa0278950 MtrunA17_Chr3g0129041 46.386 332 163 5 1 330 4 322 1.98e-87 266
Msa0278950 MtrunA17_Chr2g0320091 43.344 323 173 3 9 330 5 318 3.95e-86 263
Msa0278950 MtrunA17_Chr1g0213061 42.812 320 172 4 13 330 11 321 4.49e-86 263
Msa0278950 MtrunA17_Chr5g0400331 46.689 302 157 2 33 330 30 331 6.06e-86 263
Msa0278950 MtrunA17_Chr3g0106901 45.130 308 160 2 23 330 25 323 7.54e-86 262
Msa0278950 MtrunA17_Chr5g0432331 44.688 320 166 4 15 331 42 353 6.47e-85 261
Msa0278950 MtrunA17_Chr4g0076211 45.485 299 152 6 34 331 46 334 6.09e-84 258
Msa0278950 MtrunA17_Chr2g0279041 45.364 302 154 5 33 330 31 325 8.65e-84 257
Msa0278950 MtrunA17_Chr2g0296621 46.154 299 149 6 33 330 54 341 7.32e-83 255
Msa0278950 MtrunA17_Chr3g0128061 41.824 318 182 2 14 330 11 326 2.32e-82 253
Msa0278950 MtrunA17_Chr2g0322861 43.082 318 175 5 15 330 73 386 2.88e-82 255
Msa0278950 MtrunA17_Chr5g0421411 46.595 279 144 5 56 330 8 285 3.36e-82 251
Msa0278950 MtrunA17_Chr7g0268501 43.438 320 175 4 11 330 7 320 8.68e-82 251
Msa0278950 MtrunA17_Chr7g0268521 43.438 320 175 4 11 330 7 320 8.68e-82 251
Msa0278950 MtrunA17_Chr4g0063671 42.633 319 173 5 16 330 8 320 2.00e-80 248
Msa0278950 MtrunA17_Chr3g0107881 44.337 309 162 3 25 330 23 324 2.37e-80 248
Msa0278950 MtrunA17_Chr7g0224371 41.479 311 172 3 20 330 22 322 4.96e-79 244
Msa0278950 MtrunA17_Chr7g0254201 42.157 306 168 5 27 332 18 314 1.44e-78 243
Msa0278950 MtrunA17_Chr5g0405991 42.138 318 172 8 14 330 10 316 5.25e-78 242
Msa0278950 MtrunA17_Chr1g0204011 41.503 306 173 4 25 330 23 322 2.80e-77 240
Msa0278950 MtrunA17_Chr8g0371381 41.472 299 165 6 33 330 30 319 4.83e-76 237
Msa0278950 MtrunA17_Chr1g0194151 39.820 334 193 4 1 330 4 333 6.62e-76 237
Msa0278950 MtrunA17_Chr1g0194271 38.988 336 192 3 6 330 7 340 1.64e-75 236
Msa0278950 MtrunA17_Chr5g0401431 38.554 332 197 4 1 329 1 328 1.67e-74 233
Msa0278950 MtrunA17_Chr4g0053871 44.127 315 160 8 21 329 19 323 7.01e-73 229
Msa0278950 MtrunA17_Chr1g0164891 41.722 302 170 5 33 330 93 392 1.94e-72 230
Msa0278950 MtrunA17_Chr2g0278671 40.514 311 173 6 25 330 20 323 2.18e-72 228
Msa0278950 MtrunA17_Chr1g0157051 41.275 298 166 6 33 329 28 317 3.01e-72 227
Msa0278950 MtrunA17_Chr4g0046131 42.951 305 167 5 28 327 41 343 8.91e-72 227
Msa0278950 MtrunA17_Chr1g0188431 40.803 299 162 7 33 330 43 327 6.15e-71 224
Msa0278950 MtrunA17_Chr6g0460711 39.688 320 184 6 11 330 4 314 2.64e-70 222
Msa0278950 MtrunA17_Chr1g0148021 42.053 302 167 6 33 330 31 328 4.18e-70 222
Msa0278950 MtrunA17_Chr6g0467121 44.194 310 155 8 33 338 78 373 5.08e-70 223
Msa0278950 MtrunA17_Chr7g0225221 38.671 331 191 5 1 330 1 320 9.91e-70 221
Msa0278950 MtrunA17_Chr6g0467161 40.694 317 168 7 17 332 41 338 1.41e-69 221
Msa0278950 MtrunA17_Chr6g0477071 37.538 325 184 6 6 330 37 342 1.67e-69 221
Msa0278950 MtrunA17_Chr6g0467251 43.333 300 157 6 29 326 36 324 3.91e-69 220
Msa0278950 MtrunA17_Chr4g0075241 38.750 320 186 5 16 330 13 327 1.56e-68 218
Msa0278950 MtrunA17_Chr2g0279061 46.565 262 129 5 73 330 12 266 2.54e-68 215
Msa0278950 MtrunA17_Chr7g0254231 39.667 300 165 6 33 330 26 311 6.35e-68 216
Msa0278950 MtrunA17_Chr5g0432401 39.016 305 136 4 25 326 25 282 1.22e-64 206
Msa0278950 MtrunA17_Chr2g0329641 37.864 309 180 6 28 331 35 336 7.19e-64 206
Msa0278950 MtrunA17_Chr4g0072091 39.274 303 174 5 28 326 23 319 1.21e-63 205
Msa0278950 MtrunA17_Chr5g0413051 39.145 304 176 6 33 330 77 377 1.64e-63 206
Msa0278950 MtrunA17_Chr1g0197411 37.015 335 203 6 1 331 1 331 3.55e-63 204
Msa0278950 MtrunA17_Chr3g0136751 37.690 329 189 4 4 330 8 322 1.36e-59 195
Msa0278950 MtrunA17_Chr2g0316481 34.659 352 189 7 14 327 55 403 1.40e-58 194
Msa0278950 MtrunA17_Chr2g0316791 34.375 352 190 7 14 327 55 403 2.03e-58 194
Msa0278950 MtrunA17_Chr2g0316831 34.375 352 190 7 14 327 91 439 2.18e-57 192
Msa0278950 MtrunA17_Chr8g0364291 35.806 310 191 4 25 330 19 324 7.41e-57 188
Msa0278950 MtrunA17_Chr2g0316191 33.711 353 192 7 14 327 55 404 4.11e-56 188
Msa0278950 MtrunA17_Chr1g0181431 35.831 307 186 4 27 330 25 323 1.49e-55 184
Msa0278950 MtrunA17_Chr6g0451571 36.774 310 187 6 25 330 30 334 3.91e-55 183
Msa0278950 MtrunA17_Chr2g0311251 34.743 331 176 8 33 329 15 339 9.95e-55 182
Msa0278950 MtrunA17_Chr1g0181511 34.528 307 190 4 27 330 25 323 1.43e-54 182
Msa0278950 MtrunA17_Chr4g0074851 35.505 307 187 4 33 336 36 334 2.18e-53 179
Msa0278950 MtrunA17_Chr2g0311241 31.793 368 174 7 33 327 64 427 1.23e-52 179
Msa0278950 MtrunA17_Chr1g0181481 34.528 307 190 4 27 330 25 323 1.24e-52 177
Msa0278950 MtrunA17_Chr3g0114461 45.312 192 97 2 135 326 5 188 8.22e-49 162
Msa0278950 MtrunA17_Chr4g0004591 31.366 322 159 5 26 327 74 353 4.82e-42 150
Msa0278950 MtrunA17_Chr2g0316811 36.111 252 137 4 14 242 29 279 9.81e-42 148
Msa0278950 MtrunA17_Chr3g0114491 54.545 110 50 0 28 137 17 126 2.49e-33 120
Msa0278950 MtrunA17_Chr2g0316141 31.469 286 142 9 75 327 11 275 7.04e-32 121
Msa0278950 MtrunA17_Chr2g0316181 31.469 286 142 9 75 327 11 275 7.04e-32 121
Msa0278950 MtrunA17_Chr1g0181501 32.990 194 119 4 140 330 4 189 1.74e-26 104
Msa0278950 MtrunA17_Chr5g0432321 41.935 124 64 2 150 273 17 132 6.19e-22 90.1
Msa0278950 MtrunA17_Chr2g0316771 28.177 181 98 3 179 329 7 185 1.52e-20 88.2
Msa0278950 MtrunA17_Chr6g0468731 61.972 71 23 2 68 138 22 88 1.87e-20 84.7
Msa0278950 MtrunA17_Chr3g0104101 37.324 142 84 5 193 330 9 149 8.70e-20 84.7
Msa0278950 MtrunA17_Chr4g0013811 51.351 74 36 0 139 212 5 78 2.37e-17 75.9
Msa0278950 MtrunA17_Chr7g0254181 40.000 105 59 2 91 195 22 122 2.40e-16 75.5
Msa0278950 MtrunA17_Chr1g0181491 38.053 113 66 3 27 137 10 120 2.03e-15 72.8
Msa0278950 MtrunA17_Chr1g0196191 56.452 62 26 1 71 132 27 87 2.43e-13 67.0
Msa0278950 MtrunA17_Chr3g0124821 26.820 261 153 9 63 312 121 354 5.79e-13 69.3
Msa0278950 MtrunA17_Chr7g0268491 43.902 82 43 2 249 330 19 97 6.34e-13 64.3
Msa0278950 MtrunA17_Chr5g0432361 36.559 93 58 1 237 329 17 108 7.47e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278950 AT2G38380.1 57.143 322 135 2 25 343 27 348 1.57e-131 380
Msa0278950 AT2G38390.1 55.280 322 141 2 25 343 27 348 2.32e-127 369
Msa0278950 AT4G08770.1 56.592 311 133 2 25 333 20 330 5.95e-125 363
Msa0278950 AT4G08780.1 55.305 311 137 2 25 333 20 330 6.70e-124 360
Msa0278950 AT3G32980.1 53.754 333 145 3 25 355 27 352 8.09e-123 358
Msa0278950 AT5G06720.1 53.943 317 146 0 14 330 17 333 2.34e-121 353
Msa0278950 AT3G49120.1 53.153 333 147 3 25 355 28 353 3.30e-121 353
Msa0278950 AT3G49110.1 52.853 333 148 3 25 355 29 354 1.14e-120 352
Msa0278950 AT5G06730.1 52.188 320 153 0 14 333 18 337 3.79e-119 348
Msa0278950 AT5G19880.1 50.313 320 151 5 15 330 14 329 1.07e-107 318
Msa0278950 AT5G66390.1 49.026 308 156 1 23 330 27 333 1.64e-104 310
Msa0278950 AT1G44970.1 51.125 311 150 1 20 330 38 346 1.18e-101 304
Msa0278950 AT4G36430.1 47.500 320 160 2 11 330 19 330 1.30e-101 303
Msa0278950 AT5G19890.1 52.941 306 136 4 27 330 28 327 3.87e-101 301
Msa0278950 AT2G18140.1 48.243 313 157 2 18 330 28 335 4.26e-101 302
Msa0278950 AT2G18150.1 48.675 302 154 1 29 330 36 336 1.38e-100 301
Msa0278950 AT1G14550.1 48.039 306 151 3 26 330 23 321 7.41e-97 290
Msa0278950 AT3G50990.1 45.130 308 168 1 24 331 36 342 1.54e-91 278
Msa0278950 AT5G05340.1 47.386 306 150 4 27 330 28 324 2.94e-91 276
Msa0278950 AT1G14540.1 45.538 325 160 4 6 330 8 315 1.95e-90 274
Msa0278950 AT1G49570.1 45.246 305 162 3 27 328 46 348 1.12e-89 273
Msa0278950 AT4G16270.1 47.697 304 152 5 29 330 50 348 1.75e-89 273
Msa0278950 AT2G35380.1 48.344 302 152 3 33 330 34 335 2.17e-88 270
Msa0278950 AT5G58390.1 46.926 309 152 5 21 326 13 312 2.02e-87 266
Msa0278950 AT1G68850.1 45.215 303 160 6 33 330 34 335 8.93e-87 265
Msa0278950 AT5G58400.1 45.902 305 153 5 25 326 26 321 1.25e-85 262
Msa0278950 AT5G64120.1 46.488 299 150 6 33 330 39 328 2.99e-85 261
Msa0278950 AT2G22420.1 42.671 307 171 3 29 335 23 324 4.81e-85 261
Msa0278950 AT1G71695.1 47.249 309 151 6 33 338 48 347 1.85e-84 260
Msa0278950 AT4G25980.1 42.638 326 172 6 10 330 11 326 5.01e-84 258
Msa0278950 AT3G03670.1 43.092 304 170 2 27 330 21 321 3.91e-83 255
Msa0278950 AT5G17820.1 42.434 304 163 5 27 330 22 313 1.43e-82 254
Msa0278950 AT2G41480.1 45.574 305 150 6 33 330 33 328 2.96e-82 253
Msa0278950 AT5G17820.2 41.640 317 172 6 14 330 63 366 3.62e-81 252
Msa0278950 AT3G21770.1 42.903 310 171 5 20 327 20 325 1.12e-79 247
Msa0278950 AT4G11290.1 42.284 324 180 6 10 330 7 326 9.11e-79 244
Msa0278950 AT1G05260.1 41.265 332 186 6 1 330 1 325 1.84e-78 244
Msa0278950 AT4G37530.1 43.871 310 167 5 25 330 23 329 3.61e-78 243
Msa0278950 AT5G64100.1 44.186 301 155 6 33 330 41 331 6.24e-77 240
Msa0278950 AT2G18980.1 41.791 335 173 8 2 330 5 323 4.63e-76 238
Msa0278950 AT5G39580.1 41.692 331 177 8 1 330 4 319 5.68e-76 237
Msa0278950 AT1G05240.1 40.453 309 168 6 29 330 26 325 1.08e-75 236
Msa0278950 AT1G05250.1 40.453 309 168 6 29 330 26 325 1.08e-75 236
Msa0278950 AT4G30170.1 41.748 309 169 5 26 330 24 325 3.83e-75 235
Msa0278950 AT5G64110.1 43.854 301 158 5 33 330 38 330 6.16e-75 235
Msa0278950 AT5G51890.1 40.065 307 177 5 25 330 22 322 1.29e-74 234
Msa0278950 AT4G37520.1 42.857 308 169 5 27 330 25 329 4.04e-74 233
Msa0278950 AT3G49960.1 39.634 328 190 4 6 330 7 329 6.28e-74 232
Msa0278950 AT5G42180.1 39.752 322 186 5 8 329 3 316 7.36e-74 231
Msa0278950 AT5G15180.1 40.604 298 173 4 33 330 36 329 1.31e-73 231
Msa0278950 AT4G37520.2 42.532 308 167 6 27 330 25 326 3.76e-73 230
Msa0278950 AT3G01190.1 41.946 298 167 5 33 330 30 321 6.88e-73 229
Msa0278950 AT1G30870.1 41.042 307 164 7 33 334 55 349 3.38e-71 226
Msa0278950 AT5G67400.1 39.818 329 188 6 6 330 7 329 3.57e-71 225
Msa0278950 AT5G14130.1 40.125 319 180 6 18 330 17 330 3.94e-67 215
Msa0278950 AT4G37530.2 44.961 258 137 4 25 278 23 279 7.31e-67 213
Msa0278950 AT5G14130.2 40.125 319 180 6 18 330 58 371 8.14e-67 215
Msa0278950 AT4G33870.1 34.743 331 176 5 33 327 72 398 1.29e-66 216
Msa0278950 AT4G33420.1 39.077 325 182 8 6 330 17 325 1.40e-66 213
Msa0278950 AT4G33420.2 40.193 311 172 7 20 330 76 372 4.41e-66 213
Msa0278950 AT2G39040.1 41.346 312 172 7 26 330 43 350 1.19e-65 211
Msa0278950 AT1G77100.1 37.994 329 190 6 6 330 1 319 1.41e-65 210
Msa0278950 AT2G35380.2 47.368 247 126 3 88 330 1 247 2.15e-65 207
Msa0278950 AT4G26010.1 37.846 325 180 8 10 330 3 309 2.95e-65 209
Msa0278950 AT4G26010.2 37.846 325 180 8 10 330 31 337 4.57e-65 209
Msa0278950 AT2G34060.1 39.610 308 177 6 26 327 39 343 1.57e-64 208
Msa0278950 AT4G31760.1 36.228 334 198 5 2 330 3 326 1.89e-64 207
Msa0278950 AT2G43480.1 38.339 313 178 7 25 330 31 335 1.09e-62 203
Msa0278950 AT5G22410.1 37.705 305 176 9 27 326 26 321 1.78e-62 202
Msa0278950 AT5G40150.1 38.217 314 187 5 18 330 21 328 3.85e-62 202
Msa0278950 AT3G28200.1 37.987 308 183 6 24 330 16 316 1.32e-60 197
Msa0278950 AT2G24800.1 37.898 314 172 5 27 330 29 329 7.32e-60 196
Msa0278950 AT5G24070.1 37.171 304 178 6 32 330 40 335 1.78e-59 195
Msa0278950 AT4G17690.1 37.748 302 177 5 33 331 30 323 6.96e-59 193
Msa0278950 AT1G24110.1 36.615 325 195 7 10 330 5 322 3.27e-57 189
Msa0278950 AT3G17070.1 35.952 331 198 8 6 330 17 339 2.70e-56 187
Msa0278950 AT1G34510.1 36.025 322 190 6 10 330 3 309 1.88e-55 184
Msa0278950 AT5G47000.1 34.056 323 202 6 11 330 16 330 7.11e-54 181
Msa0278950 AT4G21960.1 35.855 304 180 6 33 331 35 328 2.00e-53 179
Msa0278950 AT2G37130.1 34.628 309 190 5 26 330 27 327 5.32e-51 173
Msa0278950 AT2G37130.2 34.768 302 185 5 33 330 3 296 3.74e-50 170
Msa0278950 AT4G25980.2 46.032 189 94 4 10 198 56 236 5.60e-48 164
Msa0278950 AT5G39580.2 39.076 238 123 7 1 231 4 226 4.64e-41 144
Msa0278950 AT3G17070.2 35.714 266 158 8 71 330 18 276 7.65e-40 142
Msa0278950 AT2G24800.2 40.116 172 99 1 27 198 29 196 1.49e-33 125
Msa0278950 AT4G32320.1 30.566 265 134 10 49 311 105 321 1.94e-15 76.6
Msa0278950 AT3G42570.1 34.247 146 83 4 53 196 15 149 2.55e-14 70.1
Msa0278950 AT1G77490.2 27.757 263 148 12 63 312 106 339 7.04e-14 72.8
Msa0278950 AT1G77490.1 27.757 263 148 12 63 312 106 339 1.15e-13 72.0
Msa0278950 AT4G35970.2 30.588 170 104 5 63 231 33 189 1.44e-11 63.9
Msa0278950 AT4G35970.1 25.397 252 142 8 63 312 33 240 1.77e-11 64.3

Find 93 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAATTCAATGATTAAAA+TGG 0.110406 2_3:-12133784 Msa0278950:CDS
CCTCTTAAGGAGTTGATATT+TGG 0.123659 2_3:+12135727 None:intergenic
TCTAATTTCTCCTTTCTTTC+CGG 0.185886 2_3:+12133743 None:intergenic
CAACAATCTTCAAGGTAAAA+AGG 0.186367 2_3:-12133910 Msa0278950:CDS
ATTTCAGGTGCTCATACTTT+TGG 0.211043 2_3:-12134116 Msa0278950:intron
AAACGCTATAGAATGCAATT+TGG 0.223355 2_3:+12136578 None:intergenic
AGTGGATGTGCCTTATTTAT+AGG 0.267625 2_3:+12136773 None:intergenic
AGTTCTGAAAGAAAACATTT+TGG 0.283013 2_3:+12133808 None:intergenic
ATGCAATTTGGGACAAGTTT+TGG 0.284651 2_3:+12136590 None:intergenic
ATACAATTCTAATATCATTT+AGG 0.303666 2_3:-12136724 Msa0278950:five_prime_UTR
CCAAATATCAACTCCTTAAG+AGG 0.308669 2_3:-12135727 Msa0278950:CDS
GAAGTTGCTGTGCTTTGATT+AGG 0.334608 2_3:+12136749 None:intergenic
TGCTGTGTAGTGGTTGTGTT+TGG 0.336469 2_3:-12136660 Msa0278950:CDS
AATGAGACTGGCAGGCATTC+GGG 0.339771 2_3:+12136524 None:intergenic
ATAGGGACATAACATGACTA+TGG 0.342354 2_3:+12136791 None:intergenic
AACGCTATAGAATGCAATTT+GGG 0.358034 2_3:+12136579 None:intergenic
AAAGCTTGTGGCAGAAATAA+AGG 0.359865 2_3:+12133464 None:intergenic
ATGTTATGTCCCTATAAATA+AGG 0.361357 2_3:-12136783 Msa0278950:five_prime_UTR
GTGGATGTGCCTTATTTATA+GGG 0.363727 2_3:+12136774 None:intergenic
GGTAATATTGATGTCCTTAC+CGG 0.366993 2_3:-12133762 Msa0278950:CDS
AAGTTGCTGTGCTTTGATTA+GGG 0.383189 2_3:+12136750 None:intergenic
CCGGTGTTGAGAACAATTCT+TGG 0.387016 2_3:+12133871 None:intergenic
GGCTGGAATATCTTCTGTTC+TGG 0.391319 2_3:-12135620 Msa0278950:intron
TCAGCACAAGAAACTCTATT+AGG 0.391364 2_3:+12135658 None:intergenic
TCCAATGTATCAGGAGTAGT+TGG 0.392375 2_3:+12133945 None:intergenic
TTATACAACTTCAACAATAC+TGG 0.396066 2_3:-12134062 Msa0278950:CDS
TTTAGTTGAAATGTGGTGAT+TGG 0.398883 2_3:-12133606 Msa0278950:three_prime_UTR
TAATGAGACTGGCAGGCATT+CGG 0.405318 2_3:+12136523 None:intergenic
GATAACATCTAATCCTCTTA+AGG 0.407011 2_3:+12135714 None:intergenic
CAATGTCCTCGGAATGGAAC+TGG 0.408408 2_3:-12133990 Msa0278950:CDS
AAAGAAAAGTGCTAGCTAGC+TGG 0.408477 2_3:-12133572 Msa0278950:three_prime_UTR
CTTGCCAATCAAAATCTTCC+AGG 0.414340 2_3:-12135379 Msa0278950:CDS
AAATCTTCCTTTGCTGATCA+AGG 0.415354 2_3:-12135331 Msa0278950:CDS
CTATAGCGTTTAAAGTCTTA+CGG 0.418187 2_3:-12136566 Msa0278950:CDS
ATGAAAATTACATTGAAAGA+AGG 0.419320 2_3:+12133495 None:intergenic
AACTTCTACAACAATCTTCA+AGG 0.429407 2_3:-12133918 Msa0278950:CDS
ATAAATTCAATGATTAAAAT+GGG 0.430148 2_3:-12133783 Msa0278950:CDS
GAATGCCTGCCAGTCTCATT+AGG 0.438956 2_3:-12136521 Msa0278950:CDS
CCCAACTACTCCTGATACAT+TGG 0.443362 2_3:-12133946 Msa0278950:CDS
AGTTGATCTAAACTGAAGTT+GGG 0.446411 2_3:+12135355 None:intergenic
TGGATCAAGTTGTGCATTTG+AGG 0.450793 2_3:+12136623 None:intergenic
AAGTTGATCTAAACTGAAGT+TGG 0.456582 2_3:+12135354 None:intergenic
TGTGTAGTGGTTGTGTTTGG+AGG 0.470520 2_3:-12136657 Msa0278950:CDS
CTTACGGAAAGTTGCTAAGA+AGG 0.471860 2_3:-12136550 Msa0278950:CDS
TTTCTCCTTTCTTTCCGGTA+AGG 0.480374 2_3:+12133748 None:intergenic
CCTAGTGGAACCTCCCAACC+TGG 0.485044 2_3:+12135433 None:intergenic
GTTGTATCAAGAGTTGGATC+GGG 0.497486 2_3:+12134035 None:intergenic
CAATCAAATTAAGACTAAAG+TGG 0.503151 2_3:-12135692 Msa0278950:CDS
AAGTATGTTGTATCAAGAGT+TGG 0.504944 2_3:+12134029 None:intergenic
TGCTGATATTCTTACACTTG+CGG 0.504955 2_3:-12135641 Msa0278950:CDS
TGTGGCCTCTACAGAATCAA+TGG 0.508564 2_3:-12133670 Msa0278950:CDS
AAGAAAAGTGCTAGCTAGCT+GGG 0.510762 2_3:-12133571 Msa0278950:three_prime_UTR
GATATTCTTACACTTGCGGC+TGG 0.511248 2_3:-12135637 Msa0278950:CDS
GATGTCCTTACCGGAAAGAA+AGG 0.513693 2_3:-12133753 Msa0278950:CDS
TGTTGTATCAAGAGTTGGAT+CGG 0.517053 2_3:+12134034 None:intergenic
AGACTATCCTTTCTTCCTAG+TGG 0.526304 2_3:+12135418 None:intergenic
AAGTTGTGCATTTGAGGAGA+AGG 0.526618 2_3:+12136629 None:intergenic
GGAGGTTCCACTAGGAAGAA+AGG 0.530073 2_3:-12135425 Msa0278950:CDS
ATAATCGATCAAGTATGAAA+AGG 0.532029 2_3:+12134081 None:intergenic
AAAATGAAGCCTAATGAGAC+TGG 0.538497 2_3:+12136512 None:intergenic
CAGTTCCATTCCGAGGACAT+TGG 0.544295 2_3:+12133991 None:intergenic
CAGTTCAATCTAAATGAATG+TGG 0.547571 2_3:-12133634 Msa0278950:exon
AACAGCTTTGTGCTGTGTAG+TGG 0.550343 2_3:-12136670 Msa0278950:CDS
TGAAGCCTAATGAGACTGGC+AGG 0.550706 2_3:+12136516 None:intergenic
CCAGGTTGGGAGGTTCCACT+AGG 0.552931 2_3:-12135433 Msa0278950:CDS
GTTGACCTAGTAGCACTCTC+AGG 0.553978 2_3:-12135298 Msa0278950:intron
CAAGAATTGTTCTCAACACC+GGG 0.559032 2_3:-12133870 Msa0278950:CDS
TAGGGACATAACATGACTAT+GGG 0.566529 2_3:+12136792 None:intergenic
CTCTACAGAATCAATGGAGG+GGG 0.569128 2_3:-12133664 Msa0278950:CDS
CGAAACCAATGTCCTCGGAA+TGG 0.569149 2_3:-12133996 Msa0278950:CDS
TCTAAACTGAAGTTGGGACC+TGG 0.569967 2_3:+12135361 None:intergenic
ATATACCTGAGAGTGCTACT+AGG 0.572149 2_3:+12135293 None:intergenic
CCAATGTATCAGGAGTAGTT+GGG 0.573997 2_3:+12133946 None:intergenic
GCCTCTACAGAATCAATGGA+GGG 0.583397 2_3:-12133666 Msa0278950:CDS
GCTGTGCTTTGATTAGGGAG+TGG 0.585152 2_3:+12136755 None:intergenic
CCAAGAATTGTTCTCAACAC+CGG 0.585556 2_3:-12133871 Msa0278950:CDS
AGTTGTGCATTTGAGGAGAA+GGG 0.593995 2_3:+12136630 None:intergenic
AGTTCAATCTAAATGAATGT+GGG 0.599780 2_3:-12133633 Msa0278950:exon
GTTGAGTCCTTGATCAGCAA+AGG 0.604222 2_3:+12135324 None:intergenic
AATTGCGAAACCAATGTCCT+CGG 0.607063 2_3:-12134001 Msa0278950:CDS
GGGTTACTTTAGTTGAAATG+TGG 0.607486 2_3:-12133613 Msa0278950:three_prime_UTR
ATGCTAATCGTATCTGCACC+CGG 0.609348 2_3:+12133852 None:intergenic
ATGAGACTGGCAGGCATTCG+GGG 0.612771 2_3:+12136525 None:intergenic
TTATTTCCAGTTCCATTCCG+AGG 0.620815 2_3:+12133984 None:intergenic
CCCCTCCATTGATTCTGTAG+AGG 0.622006 2_3:+12133665 None:intergenic
TGAATCGGATCTTGCCACTG+TGG 0.631782 2_3:-12133688 Msa0278950:CDS
TGCTGATCAAGGACTCAACA+CGG 0.632871 2_3:-12135320 Msa0278950:CDS
CCTCTACAGAATCAATGGAG+GGG 0.644153 2_3:-12133665 Msa0278950:CDS
GGCCTCTACAGAATCAATGG+AGG 0.646986 2_3:-12133667 Msa0278950:CDS
AGCTGTTGCTATGACACGAA+AGG 0.649557 2_3:+12136686 None:intergenic
GATCTATTTCCACAGACTGG+GGG 0.672586 2_3:-12135457 Msa0278950:intron
TAGTTGGGTCGAAATTGACA+CGG 0.696351 2_3:+12133961 None:intergenic
TGATTCTGTAGAGGCCACAG+TGG 0.717951 2_3:+12133674 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTGAAAAATACTTTA+TGG - chr2_3:12133870-12133889 Msa0278950:CDS 10.0%
!! AATTATTAAATTAACAAGAA+AGG + chr2_3:12134138-12134157 None:intergenic 10.0%
!!! AATTTTCAACATAATTTTAA+TGG - chr2_3:12134196-12134215 Msa0278950:intron 10.0%
!! TATAAATTCAATGATTAAAA+TGG - chr2_3:12136486-12136505 Msa0278950:intron 10.0%
!! ATAAATTCAATGATTAAAAT+GGG - chr2_3:12136487-12136506 Msa0278950:intron 10.0%
!! ATACAATTCTAATATCATTT+AGG - chr2_3:12133546-12133565 Msa0278950:three_prime_UTR 15.0%
!! ATATTATTTATGATTGAAAC+AGG - chr2_3:12134458-12134477 Msa0278950:intron 15.0%
!! TATTATTTATGATTGAAACA+GGG - chr2_3:12134459-12134478 Msa0278950:intron 15.0%
!! TATTATCTAAATATCATTGT+TGG + chr2_3:12135066-12135085 None:intergenic 15.0%
!! ATTAAAACTTAAAATTGTTG+AGG - chr2_3:12135151-12135170 Msa0278950:intron 15.0%
!!! ATGACATTAATCTTTTTTAT+TGG + chr2_3:12135324-12135343 None:intergenic 15.0%
!!! ACTAAAATTTACCTATTTTT+CGG + chr2_3:12135471-12135490 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr2_3:12135666-12135685 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr2_3:12135667-12135686 None:intergenic 15.0%
!! AAAGTGTAATATATTGTATT+GGG + chr2_3:12135707-12135726 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG + chr2_3:12135731-12135750 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + chr2_3:12135732-12135751 None:intergenic 15.0%
!!! AATTTAATCAACTCCTTTTA+TGG + chr2_3:12133978-12133997 None:intergenic 20.0%
!! AGTTGATTAAATTCCAATTA+TGG - chr2_3:12133985-12134004 Msa0278950:CDS 20.0%
!! GTTGATTAAATTCCAATTAT+GGG - chr2_3:12133986-12134005 Msa0278950:CDS 20.0%
!!! ACATCCTTGTTATTATTTTT+TGG - chr2_3:12134030-12134049 Msa0278950:CDS 20.0%
!!! TCAAGTTATTATTTTTCACT+AGG - chr2_3:12134255-12134274 Msa0278950:intron 20.0%
!!! TGATAATGAAAATTAGTCAA+TGG - chr2_3:12134284-12134303 Msa0278950:intron 20.0%
!! TGTAGATAACATTTAGAAAA+TGG + chr2_3:12135022-12135041 None:intergenic 20.0%
!! TGGTTATGATAAAAAATTCA+TGG + chr2_3:12135092-12135111 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr2_3:12135597-12135616 None:intergenic 20.0%
!!! TGAAATGAATCAGTTATTTT+GGG + chr2_3:12135619-12135638 None:intergenic 20.0%
!!! TTGAAATGAATCAGTTATTT+TGG + chr2_3:12135620-12135639 None:intergenic 20.0%
!!! GAAAGTGTAATATATTGTAT+TGG + chr2_3:12135708-12135727 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG + chr2_3:12135730-12135749 None:intergenic 20.0%
!!! AAGATTTTCTCTAAAAACAT+AGG + chr2_3:12135829-12135848 None:intergenic 20.0%
!!! TAACAAGAAATCTTTTGAAT+CGG - chr2_3:12136567-12136586 Msa0278950:CDS 20.0%
!! ATGAAAATTACATTGAAAGA+AGG + chr2_3:12136778-12136797 None:intergenic 20.0%
! ATGTTATGTCCCTATAAATA+AGG - chr2_3:12133487-12133506 Msa0278950:three_prime_UTR 25.0%
! TAACAAATACATAACTTGAG+GGG + chr2_3:12133848-12133867 None:intergenic 25.0%
! CTAACAAATACATAACTTGA+GGG + chr2_3:12133849-12133868 None:intergenic 25.0%
! AGAGCCAAAAAATAATAACA+AGG + chr2_3:12134037-12134056 None:intergenic 25.0%
! ACTAACTAACAATATACGTA+GGG - chr2_3:12134068-12134087 Msa0278950:CDS 25.0%
! AATACCTTCTCTCTAATTTA+AGG - chr2_3:12134355-12134374 Msa0278950:intron 25.0%
! ATACCTTCTCTCTAATTTAA+GGG - chr2_3:12134356-12134375 Msa0278950:intron 25.0%
!! TGTATGTAGTTTTTGTCTTT+TGG - chr2_3:12134413-12134432 Msa0278950:intron 25.0%
! CAATCAAATTAAGACTAAAG+TGG - chr2_3:12134578-12134597 Msa0278950:intron 25.0%
! CATAACCAAGATTTCAAATT+TGG - chr2_3:12135104-12135123 Msa0278950:intron 25.0%
!! CATATCCAAATTTGAAATCT+TGG + chr2_3:12135112-12135131 None:intergenic 25.0%
! TTCATTTCCCTATAAATCTA+CGG + chr2_3:12135434-12135453 None:intergenic 25.0%
!!! TAAAAGCACTTGTTATCATT+TGG - chr2_3:12135535-12135554 Msa0278950:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr2_3:12135598-12135617 None:intergenic 25.0%
!!! TTTTTAGAGAAAATCTTGTG+TGG - chr2_3:12135832-12135851 Msa0278950:intron 25.0%
!!! GAGAGTTTTATATTTAGTAC+CGG - chr2_3:12136040-12136059 Msa0278950:intron 25.0%
! CAAATATATATAGCACATGA+TGG - chr2_3:12136107-12136126 Msa0278950:intron 25.0%
! ATAATCGATCAAGTATGAAA+AGG + chr2_3:12136192-12136211 None:intergenic 25.0%
! TTATACAACTTCAACAATAC+TGG - chr2_3:12136208-12136227 Msa0278950:intron 25.0%
! AACAATCTTCAAGGTAAAAA+GGG - chr2_3:12136361-12136380 Msa0278950:intron 25.0%
!!! AGTTCTGAAAGAAAACATTT+TGG + chr2_3:12136465-12136484 None:intergenic 25.0%
! AGTTCAATCTAAATGAATGT+GGG - chr2_3:12136637-12136656 Msa0278950:CDS 25.0%
AACGCTATAGAATGCAATTT+GGG + chr2_3:12133694-12133713 None:intergenic 30.0%
AAACGCTATAGAATGCAATT+TGG + chr2_3:12133695-12133714 None:intergenic 30.0%
! CTATAGCGTTTAAAGTCTTA+CGG - chr2_3:12133704-12133723 Msa0278950:CDS 30.0%
GCTAACAAATACATAACTTG+AGG + chr2_3:12133850-12133869 None:intergenic 30.0%
!! TTGTCTTGATTTTTCAGATG+TGG + chr2_3:12133897-12133916 None:intergenic 30.0%
TACGTAAACGTAACCATAAA+AGG - chr2_3:12133962-12133981 Msa0278950:CDS 30.0%
AGAAATGTATTGCCCATAAT+TGG + chr2_3:12134001-12134020 None:intergenic 30.0%
CACTAACTAACAATATACGT+AGG - chr2_3:12134067-12134086 Msa0278950:CDS 30.0%
GCCAAAAATTAATAGTGTCA+TGG - chr2_3:12134167-12134186 Msa0278950:intron 30.0%
! GCCATGACACTATTAATTTT+TGG + chr2_3:12134171-12134190 None:intergenic 30.0%
TTTCCCTTAAATTAGAGAGA+AGG + chr2_3:12134362-12134381 None:intergenic 30.0%
GATAACATCTAATCCTCTTA+AGG + chr2_3:12134559-12134578 None:intergenic 30.0%
AGTTGATCTAAACTGAAGTT+GGG + chr2_3:12134918-12134937 None:intergenic 30.0%
! AAGTTGATCTAAACTGAAGT+TGG + chr2_3:12134919-12134938 None:intergenic 30.0%
! TTGACTTGATGAATAGTCTA+TGG - chr2_3:12135190-12135209 Msa0278950:intron 30.0%
CATTGCTTAATAAGTAGACA+AGG - chr2_3:12135387-12135406 Msa0278950:CDS 30.0%
TCCTTAACCGTAGATTTATA+GGG - chr2_3:12135424-12135443 Msa0278950:CDS 30.0%
TTAGTCAACCTAAATGAATG+TGG - chr2_3:12135486-12135505 Msa0278950:intron 30.0%
TAGTCAACCTAAATGAATGT+GGG - chr2_3:12135487-12135506 Msa0278950:intron 30.0%
AAAGTAACCCACATTCATTT+AGG + chr2_3:12135497-12135516 None:intergenic 30.0%
! TGAATGTGGGTTACTTTATT+AGG - chr2_3:12135500-12135519 Msa0278950:intron 30.0%
!! AGTTTTATATTTAGTACCGG+AGG - chr2_3:12136043-12136062 Msa0278950:intron 30.0%
TACTAAACTGCTTCAATTTC+AGG - chr2_3:12136139-12136158 Msa0278950:intron 30.0%
AAGTATGTTGTATCAAGAGT+TGG + chr2_3:12136244-12136263 None:intergenic 30.0%
! AAGTTTTTGTCCAATGTATC+AGG + chr2_3:12136337-12136356 None:intergenic 30.0%
AACTTCTACAACAATCTTCA+AGG - chr2_3:12136352-12136371 Msa0278950:intron 30.0%
CAACAATCTTCAAGGTAAAA+AGG - chr2_3:12136360-12136379 Msa0278950:intron 30.0%
TCTAATTTCTCCTTTCTTTC+CGG + chr2_3:12136530-12136549 None:intergenic 30.0%
CAGTTCAATCTAAATGAATG+TGG - chr2_3:12136636-12136655 Msa0278950:CDS 30.0%
TTTAGTTGAAATGTGGTGAT+TGG - chr2_3:12136664-12136683 Msa0278950:CDS 30.0%
TAGGGACATAACATGACTAT+GGG + chr2_3:12133481-12133500 None:intergenic 35.0%
ATAGGGACATAACATGACTA+TGG + chr2_3:12133482-12133501 None:intergenic 35.0%
!! GTGGATGTGCCTTATTTATA+GGG + chr2_3:12133499-12133518 None:intergenic 35.0%
!! AGTGGATGTGCCTTATTTAT+AGG + chr2_3:12133500-12133519 None:intergenic 35.0%
AAGTTGCTGTGCTTTGATTA+GGG + chr2_3:12133523-12133542 None:intergenic 35.0%
!! CAAGTTTTGGCGTAAAAGTA+TGG + chr2_3:12133670-12133689 None:intergenic 35.0%
!! ATGCAATTTGGGACAAGTTT+TGG + chr2_3:12133683-12133702 None:intergenic 35.0%
AAAATGAAGCCTAATGAGAC+TGG + chr2_3:12133761-12133780 None:intergenic 35.0%
ACTAACAATATACGTAGGGT+TGG - chr2_3:12134072-12134091 Msa0278950:CDS 35.0%
!! CCTCTTAAGGAGTTGATATT+TGG + chr2_3:12134546-12134565 None:intergenic 35.0%
CCAAATATCAACTCCTTAAG+AGG - chr2_3:12134543-12134562 Msa0278950:intron 35.0%
TCAGCACAAGAAACTCTATT+AGG + chr2_3:12134615-12134634 None:intergenic 35.0%
TGCTGATATTCTTACACTTG+CGG - chr2_3:12134629-12134648 Msa0278950:intron 35.0%
!!! TGGAAGATTTTGATTGGCAA+GGG + chr2_3:12134892-12134911 None:intergenic 35.0%
AAATCTTCCTTTGCTGATCA+AGG - chr2_3:12134939-12134958 Msa0278950:intron 35.0%
ATGAATAGTCTATGGAGATG+TGG - chr2_3:12135198-12135217 Msa0278950:intron 35.0%
TGAATAGTCTATGGAGATGT+GGG - chr2_3:12135199-12135218 Msa0278950:intron 35.0%
CTCCTTAACCGTAGATTTAT+AGG - chr2_3:12135423-12135442 Msa0278950:CDS 35.0%
TCCCTATAAATCTACGGTTA+AGG + chr2_3:12135428-12135447 None:intergenic 35.0%
!! TATTTTTCGGTCACTTCTGA+GGG + chr2_3:12135458-12135477 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr2_3:12135584-12135603 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr2_3:12135753-12135772 Msa0278950:CDS 35.0%
CCAAAGTAGGTCAATTATAC+CGG - chr2_3:12135766-12135785 Msa0278950:CDS 35.0%
CAAAGTAGGTCAATTATACC+GGG - chr2_3:12135767-12135786 Msa0278950:CDS 35.0%
TTGGTCACACAAAGAGAAAA+AGG - chr2_3:12135877-12135896 Msa0278950:intron 35.0%
AAAGGAGAAGAGAGAGAAAA+TGG - chr2_3:12135895-12135914 Msa0278950:intron 35.0%
GTGACCAAACCAAAATTCTT+TGG - chr2_3:12135960-12135979 Msa0278950:intron 35.0%
!!! AGGACCAAAGAATTTTGGTT+TGG + chr2_3:12135967-12135986 None:intergenic 35.0%
AAACCAAAATTCTTTGGTCC+TGG - chr2_3:12135966-12135985 Msa0278950:intron 35.0%
AAACATGAGAAACACTTGTG+TGG + chr2_3:12135993-12136012 None:intergenic 35.0%
GTGTTGCAAATGTTTGTCTA+GGG + chr2_3:12136082-12136101 None:intergenic 35.0%
TGTGTTGCAAATGTTTGTCT+AGG + chr2_3:12136083-12136102 None:intergenic 35.0%
!! ATTTCAGGTGCTCATACTTT+TGG - chr2_3:12136154-12136173 Msa0278950:intron 35.0%
!! TTTCAGGTGCTCATACTTTT+GGG - chr2_3:12136155-12136174 Msa0278950:intron 35.0%
TGTTGTATCAAGAGTTGGAT+CGG + chr2_3:12136239-12136258 None:intergenic 35.0%
GGTAATATTGATGTCCTTAC+CGG - chr2_3:12136508-12136527 Msa0278950:CDS 35.0%
! GGGTTACTTTAGTTGAAATG+TGG - chr2_3:12136657-12136676 Msa0278950:CDS 35.0%
GAAGTTGCTGTGCTTTGATT+AGG + chr2_3:12133524-12133543 None:intergenic 40.0%
AGTTGTGCATTTGAGGAGAA+GGG + chr2_3:12133643-12133662 None:intergenic 40.0%
AAGTTGTGCATTTGAGGAGA+AGG + chr2_3:12133644-12133663 None:intergenic 40.0%
! TGGATCAAGTTGTGCATTTG+AGG + chr2_3:12133650-12133669 None:intergenic 40.0%
CTTACGGAAAGTTGCTAAGA+AGG - chr2_3:12133720-12133739 Msa0278950:CDS 40.0%
!! TATACGTAGGGTTGGTCTAA+AGG - chr2_3:12134080-12134099 Msa0278950:CDS 40.0%
CGTACTGAAACCTTTGTTCT+AGG - chr2_3:12134111-12134130 Msa0278950:CDS 40.0%
CAAGAAAGGACCTAGAACAA+AGG + chr2_3:12134124-12134143 None:intergenic 40.0%
ATCGATCTATTTCCACAGAC+TGG - chr2_3:12134810-12134829 Msa0278950:intron 40.0%
TCGATCTATTTCCACAGACT+GGG - chr2_3:12134811-12134830 Msa0278950:intron 40.0%
AGACTATCCTTTCTTCCTAG+TGG + chr2_3:12134855-12134874 None:intergenic 40.0%
!!! CTGGAAGATTTTGATTGGCA+AGG + chr2_3:12134893-12134912 None:intergenic 40.0%
CTTGCCAATCAAAATCTTCC+AGG - chr2_3:12134891-12134910 Msa0278950:intron 40.0%
!! ATATACCTGAGAGTGCTACT+AGG + chr2_3:12134980-12134999 None:intergenic 40.0%
!! CTATTTTTCGGTCACTTCTG+AGG + chr2_3:12135459-12135478 None:intergenic 40.0%
CTCAGAAGTGACCGAAAAAT+AGG - chr2_3:12135457-12135476 Msa0278950:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr2_3:12135583-12135602 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG + chr2_3:12135769-12135788 None:intergenic 40.0%
GAGAGAAGAGAATAGAGAGA+AGG - chr2_3:12135922-12135941 Msa0278950:intron 40.0%
GGGACAACAATTAATACCTC+CGG + chr2_3:12136062-12136081 None:intergenic 40.0%
GTTGTATCAAGAGTTGGATC+GGG + chr2_3:12136238-12136257 None:intergenic 40.0%
AATTGCGAAACCAATGTCCT+CGG - chr2_3:12136269-12136288 Msa0278950:intron 40.0%
TTATTTCCAGTTCCATTCCG+AGG + chr2_3:12136289-12136308 None:intergenic 40.0%
TAGTTGGGTCGAAATTGACA+CGG + chr2_3:12136312-12136331 None:intergenic 40.0%
CCAATGTATCAGGAGTAGTT+GGG + chr2_3:12136327-12136346 None:intergenic 40.0%
TCCAATGTATCAGGAGTAGT+TGG + chr2_3:12136328-12136347 None:intergenic 40.0%
CCAAGAATTGTTCTCAACAC+CGG - chr2_3:12136399-12136418 Msa0278950:intron 40.0%
CAAGAATTGTTCTCAACACC+GGG - chr2_3:12136400-12136419 Msa0278950:intron 40.0%
TTTCTCCTTTCTTTCCGGTA+AGG + chr2_3:12136525-12136544 None:intergenic 40.0%
!! AAAGAAAAGTGCTAGCTAGC+TGG - chr2_3:12136698-12136717 Msa0278950:exon 40.0%
!! AAGAAAAGTGCTAGCTAGCT+GGG - chr2_3:12136699-12136718 Msa0278950:exon 40.0%
AGCTGTTGCTATGACACGAA+AGG + chr2_3:12133587-12133606 None:intergenic 45.0%
! AACAGCTTTGTGCTGTGTAG+TGG - chr2_3:12133600-12133619 Msa0278950:three_prime_UTR 45.0%
TGCTGTGTAGTGGTTGTGTT+TGG - chr2_3:12133610-12133629 Msa0278950:three_prime_UTR 45.0%
TGTGTAGTGGTTGTGTTTGG+AGG - chr2_3:12133613-12133632 Msa0278950:three_prime_UTR 45.0%
TAATGAGACTGGCAGGCATT+CGG + chr2_3:12133750-12133769 None:intergenic 45.0%
GATATTCTTACACTTGCGGC+TGG - chr2_3:12134633-12134652 Msa0278950:intron 45.0%
GGCTGGAATATCTTCTGTTC+TGG - chr2_3:12134650-12134669 Msa0278950:intron 45.0%
CGATCTATTTCCACAGACTG+GGG - chr2_3:12134812-12134831 Msa0278950:intron 45.0%
GATCTATTTCCACAGACTGG+GGG - chr2_3:12134813-12134832 Msa0278950:intron 45.0%
!! GGGACCTGGAAGATTTTGAT+TGG + chr2_3:12134898-12134917 None:intergenic 45.0%
TCTAAACTGAAGTTGGGACC+TGG + chr2_3:12134912-12134931 None:intergenic 45.0%
GTTGAGTCCTTGATCAGCAA+AGG + chr2_3:12134949-12134968 None:intergenic 45.0%
TGCTGATCAAGGACTCAACA+CGG - chr2_3:12134950-12134969 Msa0278950:intron 45.0%
AATAATTACTCCCTCCGTCC+CGG - chr2_3:12135562-12135581 Msa0278950:intron 45.0%
GTAGGTCAATTATACCGGGA+CGG - chr2_3:12135771-12135790 Msa0278950:CDS 45.0%
AAAGACCACTTGTGTGGATC+AGG + chr2_3:12135859-12135878 None:intergenic 45.0%
TGATCCACACAAGTGGTCTT+TGG - chr2_3:12135858-12135877 Msa0278950:intron 45.0%
! GGACCAGGACCAAAGAATTT+TGG + chr2_3:12135972-12135991 None:intergenic 45.0%
CCCAACTACTCCTGATACAT+TGG - chr2_3:12136324-12136343 Msa0278950:intron 45.0%
! CCGGTGTTGAGAACAATTCT+TGG + chr2_3:12136402-12136421 None:intergenic 45.0%
ATGCTAATCGTATCTGCACC+CGG + chr2_3:12136421-12136440 None:intergenic 45.0%
GATGTCCTTACCGGAAAGAA+AGG - chr2_3:12136517-12136536 Msa0278950:CDS 45.0%
TGTGGCCTCTACAGAATCAA+TGG - chr2_3:12136600-12136619 Msa0278950:CDS 45.0%
GCCTCTACAGAATCAATGGA+GGG - chr2_3:12136604-12136623 Msa0278950:CDS 45.0%
CCTCTACAGAATCAATGGAG+GGG - chr2_3:12136605-12136624 Msa0278950:CDS 45.0%
CTCTACAGAATCAATGGAGG+GGG - chr2_3:12136606-12136625 Msa0278950:CDS 45.0%
AGAATCAATGGAGGGGGATA+TGG - chr2_3:12136612-12136631 Msa0278950:CDS 45.0%
!! AAAAATATATATATTTGTAT+AGG + chr2_3:12134702-12134721 None:intergenic 5.0%
!!! ACAAATATATATATTTTTTT+TGG - chr2_3:12134704-12134723 Msa0278950:intron 5.0%
!!! TTTAAGTTTTAATAATAATA+TGG + chr2_3:12135144-12135163 None:intergenic 5.0%
GCTGTGCTTTGATTAGGGAG+TGG + chr2_3:12133518-12133537 None:intergenic 50.0%
AATGAGACTGGCAGGCATTC+GGG + chr2_3:12133749-12133768 None:intergenic 50.0%
GAATGCCTGCCAGTCTCATT+AGG - chr2_3:12133749-12133768 Msa0278950:CDS 50.0%
TGAAGCCTAATGAGACTGGC+AGG + chr2_3:12133757-12133776 None:intergenic 50.0%
GGAGGTTCCACTAGGAAGAA+AGG - chr2_3:12134845-12134864 Msa0278950:intron 50.0%
GTTGACCTAGTAGCACTCTC+AGG - chr2_3:12134972-12134991 Msa0278950:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr2_3:12135579-12135598 None:intergenic 50.0%
CTGTATTACTACCTCCGTCC+CGG + chr2_3:12135788-12135807 None:intergenic 50.0%
GTGACCAAAGACCACTTGTG+TGG + chr2_3:12135865-12135884 None:intergenic 50.0%
GAGAAACACTTGTGTGGACC+AGG + chr2_3:12135987-12136006 None:intergenic 50.0%
CGAAACCAATGTCCTCGGAA+TGG - chr2_3:12136274-12136293 Msa0278950:intron 50.0%
CAGTTCCATTCCGAGGACAT+TGG + chr2_3:12136282-12136301 None:intergenic 50.0%
CAATGTCCTCGGAATGGAAC+TGG - chr2_3:12136280-12136299 Msa0278950:intron 50.0%
TGAATCGGATCTTGCCACTG+TGG - chr2_3:12136582-12136601 Msa0278950:CDS 50.0%
TGATTCTGTAGAGGCCACAG+TGG + chr2_3:12136599-12136618 None:intergenic 50.0%
GGCCTCTACAGAATCAATGG+AGG - chr2_3:12136603-12136622 Msa0278950:CDS 50.0%
!! CCCCTCCATTGATTCTGTAG+AGG + chr2_3:12136608-12136627 None:intergenic 50.0%
ATGAGACTGGCAGGCATTCG+GGG + chr2_3:12133748-12133767 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr2_3:12135575-12135594 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG - chr2_3:12135774-12135793 Msa0278950:CDS 55.0%
GTGGTCCTGATCCACACAAG+TGG - chr2_3:12135851-12135870 Msa0278950:intron 55.0%
TTTCCACAGACTGGGGGTCC+AGG - chr2_3:12134819-12134838 Msa0278950:intron 60.0%
ACAGACTGGGGGTCCAGGTT+GGG - chr2_3:12134824-12134843 Msa0278950:intron 60.0%
CCTAGTGGAACCTCCCAACC+TGG + chr2_3:12134840-12134859 None:intergenic 60.0%
! CCAGGTTGGGAGGTTCCACT+AGG - chr2_3:12134837-12134856 Msa0278950:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr2_3:12135576-12135595 None:intergenic 60.0%
CAACCTGGACCCCCAGTCTG+TGG + chr2_3:12134825-12134844 None:intergenic 65.0%
CACAGACTGGGGGTCCAGGT+TGG - chr2_3:12134823-12134842 Msa0278950:intron 65.0%
! GACTGGGGGTCCAGGTTGGG+AGG - chr2_3:12134827-12134846 Msa0278950:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 12133477 12136815 12133477 ID=Msa0278950;Name=Msa0278950
chr2_3 mRNA 12133477 12136815 12133477 ID=Msa0278950-mRNA-1;Parent=Msa0278950;Name=Msa0278950-mRNA-1;_AED=0.10;_eAED=0.10;_QI=100|1|1|1|1|1|4|167|355
chr2_3 exon 12133477 12134131 12133477 ID=Msa0278950-mRNA-1:exon:5464;Parent=Msa0278950-mRNA-1
chr2_3 exon 12135299 12135464 12135299 ID=Msa0278950-mRNA-1:exon:5463;Parent=Msa0278950-mRNA-1
chr2_3 exon 12135621 12135812 12135621 ID=Msa0278950-mRNA-1:exon:5462;Parent=Msa0278950-mRNA-1
chr2_3 exon 12136494 12136815 12136494 ID=Msa0278950-mRNA-1:exon:5461;Parent=Msa0278950-mRNA-1
chr2_3 five_prime_UTR 12136716 12136815 12136716 ID=Msa0278950-mRNA-1:five_prime_utr;Parent=Msa0278950-mRNA-1
chr2_3 CDS 12136494 12136715 12136494 ID=Msa0278950-mRNA-1:cds;Parent=Msa0278950-mRNA-1
chr2_3 CDS 12135621 12135812 12135621 ID=Msa0278950-mRNA-1:cds;Parent=Msa0278950-mRNA-1
chr2_3 CDS 12135299 12135464 12135299 ID=Msa0278950-mRNA-1:cds;Parent=Msa0278950-mRNA-1
chr2_3 CDS 12133644 12134131 12133644 ID=Msa0278950-mRNA-1:cds;Parent=Msa0278950-mRNA-1
chr2_3 three_prime_UTR 12133477 12133643 12133477 ID=Msa0278950-mRNA-1:three_prime_utr;Parent=Msa0278950-mRNA-1
Gene Sequence

>Msa0278950

ATGAACTCCTTTCGTGTCATAGCAACAGCTTTGTGCTGTGTAGTGGTTGTGTTTGGAGGACTACCCTTCTCCTCAAATGCACAACTTGATCCATACTTTTACGCCAAAACTTGTCCCAAATTGCATTCTATAGCGTTTAAAGTCTTACGGAAAGTTGCTAAGAAGGATCCCCGAATGCCTGCCAGTCTCATTAGGCTTCATTTTCATGATTGTTTCGTTCAAGGTTGTGATGCATCAGTTTTGTTGAATAACACTGCAACTATTGTGAGTGAACAAGATGCTTTTCCAAATATCAACTCCTTAAGAGGATTAGATGTTATCAATCAAATTAAGACTAAAGTGGAAAAAGCTTGTCCTAATAGAGTTTCTTGTGCTGATATTCTTACACTTGCGGCTGGAATATCTTCTGTTCTGACTGGGGGTCCAGGTTGGGAGGTTCCACTAGGAAGAAAGGATAGTCTAACAGCAAATCAATCCCTTGCCAATCAAAATCTTCCAGGTCCCAACTTCAGTTTAGATCAACTTAAATCTTCCTTTGCTGATCAAGGACTCAACACGGTTGACCTAGTAGCACTCTCAGGTGCTCATACTTTTGGGAGAGCACGTTGCCTTTTCATACTTGATCGATTATACAACTTCAACAATACTGGCAAACCCGATCCAACTCTTGATACAACATACTTAAAACAATTGCGAAACCAATGTCCTCGGAATGGAACTGGAAATAACCGTGTCAATTTCGACCCAACTACTCCTGATACATTGGACAAAAACTTCTACAACAATCTTCAAGGTAAAAAGGGTTTGCTTCAAAGTGACCAAGAATTGTTCTCAACACCGGGTGCAGATACGATTAGCATTGTCAACAGCTTTGCAAATAGCCAAAATGTTTTCTTTCAGAACTTTATAAATTCAATGATTAAAATGGGTAATATTGATGTCCTTACCGGAAAGAAAGGAGAAATTAGAAAGCAATGCAATTTTATTAACAAGAAATCTTTTGAATCGGATCTTGCCACTGTGGCCTCTACAGAATCAATGGAGGGGGATATGGTCAGTTCAATCTAA

Protein sequence

>Msa0278950

MNSFRVIATALCCVVVVFGGLPFSSNAQLDPYFYAKTCPKLHSIAFKVLRKVAKKDPRMPASLIRLHFHDCFVQGCDASVLLNNTATIVSEQDAFPNINSLRGLDVINQIKTKVEKACPNRVSCADILTLAAGISSVLTGGPGWEVPLGRKDSLTANQSLANQNLPGPNFSLDQLKSSFADQGLNTVDLVALSGAHTFGRARCLFILDRLYNFNNTGKPDPTLDTTYLKQLRNQCPRNGTGNNRVNFDPTTPDTLDKNFYNNLQGKKGLLQSDQELFSTPGADTISIVNSFANSQNVFFQNFINSMIKMGNIDVLTGKKGEIRKQCNFINKKSFESDLATVASTESMEGDMVSSI*